Bacterial WGS Analysis For Project
2023-10-03
version 1.3.0
Assembly statistics
| Field | Description |
|---|---|
| Sample | Name of the sample |
| Reads | Total number of reads after quality filtering |
| AvgReadLen | Average read length after quality filtering |
| Contigs | Number of contigs of the draft genome (>200bp) |
| GenomeLength | Length (bp) of the draft genome |
| LargestContig | Length (bp) of the largest contig in the genome |
| N50 | “Length of the smallest contig in the set that contains the fewest (largest) contigs whose combined length represents at least 50% of the assembly” (Miller et al., 2010) |
| GC | GC content (%) of the draft genome |
| Depth | Number of times each nucleotide position in the draft genome has a read that align to that position |
* When already assembled genomes are included for analysis, “NA” will appear for “Reads”, “AvgReadLen” and “Depth” fields.
Select the parameter
Number of contigs
## Warning: `arrange_()` was deprecated in dplyr 0.7.0.
## Please use `arrange()` instead.
## See vignette('programming') for more helpGenome length
Average genome length per sample = 7.8252815^{6} bpLargest contig length
Average largest contig length per sample = 4.2757^{5} bpN50
Average N50 per sample = 1.0028862^{5} bpGC content
Average GC content per sample = 63.236%Number of reads
Average number of reads per sample = 14884902Average read length
Average read length per sample = 149 bpSequencing depth
Average sequencing depth = 294XTaxonomic identification
Taxonomic identification was performed by using Kraken2 (Wood
et al., 2019). Further details can be found in the Kraken2
webpage. Additionally, 16S rRNA genes were extracted from each
genome by using Barrnap and used for
taxonomic classification by using the RDP Classifier (Wang et al.,
2007) at a confidence level of 0.8. Further details can be found in
the RDPTools
webpage.
Taxonomic identification by using Kraken2
The number between brackets refers to the percentage of reads (when starting from raw reads) or contigs (when starting from already assembled genomes) from each sample covered by the clade rooted at this taxon.
| Sample | Family | Genus | Species |
|---|---|---|---|
| Sample-01 | Pseudomonadaceae (99.34%) | Pseudomonas (98.19%) | Pseudomonas aeruginosa (27.78%) |
| Sample-02 | Pseudomonadaceae (99.42%) | Pseudomonas (99.33%) | Pseudomonas aeruginosa (34.12%) |
| Sample-03 | Pseudomonadaceae (99.47%) | Pseudomonas (99.40%) | Pseudomonas aeruginosa (34.45%) |
| Sample-04 | Pseudomonadaceae (99.24%) | Pseudomonas (98.35%) | Pseudomonas aeruginosa (29.90%) |
| Sample-05 | Pseudomonadaceae (99.57%) | Pseudomonas (99.50%) | Pseudomonas aeruginosa (33.02%) |
| Sample-06 | Pseudomonadaceae (93.22%) | Pseudomonas (92.31%) | Pseudomonas aeruginosa (27.38%) |
| Sample-07 | Pseudomonadaceae (96.67%) | Pseudomonas (95.76%) | Pseudomonas aeruginosa (33.09%) |
| Sample-08 | Pseudomonadaceae (94.29%) | Pseudomonas (94.18%) | Pseudomonas aeruginosa (30.44%) |
Taxonomic identification by using RDP Classifier
| Field | Description |
|---|---|
| Sample | Name of the sample where the 16S rRNA gene was found. Note that the same sample might harbor more than one 16S rRNA gene copy. |
| Contig | Name of the contig where the 16S rRNA gene was found. |
| Position | Position within the contig where the 16S rRNA gene was found (begin-end). Note that the 16S rRNA genes identified for one sample might not harbor the same length (fragmented, etc.). |
| Strand | Strand of the 16S rRNA gene defined as forward (+) or reverse (-). |
| Order | Taxonomic order that the 16S rRNA gene was assigned over a confidence level of 0.8. |
| Family | Taxonomic family that the 16S rRNA gene was assigned over a confidence level of 0.8. |
| Genus | Taxonomic genus that the 16S rRNA gene was assigned over a confidence level of 0.8. |
| Sample | Contig | Position | Strand | Order | Family | Genus |
|---|---|---|---|---|---|---|
| Sample-01-16S_rRNA | NODE_58_length_20946_cov_317.172984 | 11-1542 | (-) | Pseudomonadales | Pseudomonadaceae | Pseudomonas |
| Sample-02-16S_rRNA | NODE_244_length_5224_cov_983.265980 | 67-1598 | (+) | Pseudomonadales | Pseudomonadaceae | Pseudomonas |
| Sample-03-16S_rRNA | NODE_131_length_5224_cov_831.429765 | 3626-5157 | (-) | Pseudomonadales | Pseudomonadaceae | Pseudomonas |
| Sample-04-16S_rRNA | NODE_144_length_5535_cov_814.656284 | 3647-5178 | (-) | Pseudomonadales | Pseudomonadaceae | Pseudomonas |
| Sample-05-16S_rRNA | NODE_71_length_4763_cov_903.900982 | 3069-4600 | (-) | Pseudomonadales | Pseudomonadaceae | Pseudomonas |
| Sample-06-16S_rRNA | NODE_121_length_1291_cov_148.849259 | 11-1291 | (-) | Bacillales | Bacillaceae 1 | Bacillus |
| Sample-06-16S_rRNA | NODE_135_length_831_cov_630.728117 | 2-831 | (+) | Pseudomonadales | Pseudomonadaceae | Pseudomonas |
| Sample-06-16S_rRNA | NODE_139_length_718_cov_707.003120 | 1-718 | (-) | Pseudomonadales | Pseudomonadaceae | Pseudomonas |
| Sample-07-16S_rRNA | NODE_110_length_1839_cov_785.124291 | 297-1828 | (+) | Pseudomonadales | Pseudomonadaceae | Pseudomonas |
| Sample-08-16S_rRNA | NODE_210_length_1562_cov_127.516498 | 11-1558 | (-) | Bacillales | Bacillaceae 1 | Bacillus |
| Sample-08-16S_rRNA | NODE_220_length_1040_cov_1009.375909 | 0-914 | (-) | Pseudomonadales | Pseudomonadaceae | Pseudomonas |
| Sample-08-16S_rRNA | NODE_212_length_1344_cov_993.817680 | 0-608 | (+) | Pseudomonadales | Pseudomonadaceae | Pseudomonas |
Multi-Locus Sequence Typing (MLST)
Further details can be found in mlst web page.
| Symbol | Meaning |
|---|---|
| ~ | novel full length allele similar to match |
| ? | partial match to known allele |
| - | allele missing |
| Scheme | ST | 1 | 2 | 3 | 4 | 5 | 6 | 7 | |
|---|---|---|---|---|---|---|---|---|---|
| Sample-01 | paeruginosa | - | acsA(17) | aroE(2?) | guaA(11) | mutL(3) | nuoD(81) | ppsA(38) | trpE(3) |
| Sample-02 | paeruginosa | - | acsA(27) | aroE(24) | guaA(36) | mutL(11) | nuoD(4) | ppsA(15) | trpE(14) |
| Sample-03 | paeruginosa | - | acsA(27) | aroE(24) | guaA(36) | mutL(11) | nuoD(4) | ppsA(15) | trpE(14) |
| Sample-04 | paeruginosa | 1858 | acsA(17) | aroE(2) | guaA(11) | mutL(3) | nuoD(81) | ppsA(38) | trpE(3) |
| Sample-05 | paeruginosa | 287 | acsA(15) | aroE(5) | guaA(11) | mutL(11) | nuoD(50) | ppsA(42) | trpE(57) |
| Sample-06 | paeruginosa | 1858 | acsA(17) | aroE(2) | guaA(11) | mutL(3) | nuoD(81) | ppsA(38) | trpE(3) |
| Sample-07 | paeruginosa | 167 | acsA(40) | aroE(5) | guaA(11) | mutL(5) | nuoD(4) | ppsA(38) | trpE(37) |
| Sample-08 | paeruginosa | 1395 | acsA(25) | aroE(5) | guaA(36) | mutL(5) | nuoD(4) | ppsA(117) | trpE(7) |
Pangenome analysis
Pangenome genes summary
| Genes | Description | Number |
|---|---|---|
| Core genes | (99% <= strains <= 100%) | 4951 |
| Soft core genes | (95% <= strains < 99%) | 0 |
| Shell genes | (15% <= strains < 95%) | 5469 |
| Cloud genes | (0% <= strains < 15%) | 1580 |
| Total genes | (0% <= strains <= 100%) | 12000 |
Schematic representation of genes presence (color) or absence (blank) between ssamples:
Pangenome tree based on presence/absence of accesory genes representation
Rectangular (phylogram)
Circular (phylogram)
Rectangular (cladogram)
Circular (cladogram)
Pangenome tree based on core genes alignment representation
Rectangular (phylogram)
Circular (phylogram)
Rectangular (cladogram)
Circular (cladogram)
Antimicrobial resistance
The search of antimicrobial resistance genes was performed by screening the genome against Resfinder (E. Zankari et al., 2012), CARD (A.G. McArthur et al., 2013) and ARG-ANNOT (S.K. Gupta et al., 2014) databases by using Abricate. Any hit with coverage and/or identity below 90% was removed. If you would like to inspect hits with coverage and/or identity below 90%, please go to the corresponing output directory.
| Field | Description |
|---|---|
| Contig | Contig name where the gene was found |
| Start | Start position of the gene within the contig |
| End | End position of the gene within the contig |
| Gene | Antimicrobial resistance gene |
| Gaps | Gaps in subject (genome) and query (antimicrobial resistance gene) |
| Coverage | Proportion (%) of the gene covered |
| Identity | Proportion (%) of exact nucleotide matches |
| Accession | Accesion number of the antimicrobial resistance gene |
| Product | Antimicrobial resistance gene product |
| Resistance | Antimicrobial that the gene confers resistance to |
Select the samples and the database
Sample-01
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| NODE_71 length_18397 cov_222.597380 | 3843 | 4631 | blaOXA-50_1 | 0/0 | 100 | 100 | AY306130 | blaOXA-50 | Amoxicillin, Ampicillin |
| NODE_156 length_10939 cov_163.443749 | 1491 | 2684 | blaPAO_1 | 0/0 | 100 | 100 | AY083595 | blaPAO | |
| NODE_112 length_13675 cov_228.177673 | 2703 | 3341 | catB7_1 | 0/0 | 100 | 100 | AF036933 | catB7 | Chloramphenicol |
| NODE_25 length_29638 cov_279.823687 | 3722 | 3919 | crpP_1 | 0/0 | 100 | 99 | HM560971 | crpP | Ciprofloxacin |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| NODE_51 length_22415 cov_195.410959 | 5849 | 6010 | ArmR | 0/0 | 100 | 100 | AE004091.2:4165880-4165718 | ArmR a 53-amino-acid antirepressor allosterically inhibits MexR dimer-DNA binding by occupying a hydrophobic binding cavity within the center of the MexR dimer. ArmR up-regulation and MexR-ArmR complex formation have previously been shown to upregulate MexAB-OprM. | aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| NODE_162 length_10625 cov_147.278821 | 4927 | 6360 | basS | 0/0 | 100 | 100 | JQ340365:0-1434 | Histidine protein kinase sensor Lipid A modification gene, part of a two-component system involved in polymyxin resistance that senses high extracellular Fe(2+) | peptide |
| NODE_25 length_29638 cov_279.823687 | 3722 | 3919 | CrpP | 0/0 | 100 | 99 | HM560971.1:119269-119071 | A plasmid-encoded ciprofloxacin resistance protein identified from a Pseudomonas aeruginosa plasmid. CrpP confers resistance to ciprofloxacin by antibiotic inactivation through phosphorylation. Described by Chavez-Jacobo et al. 2018. | fluoroquinolone |
| NODE_130 length_12490 cov_226.659873 | 4903 | 6054 | MexA | 0/0 | 100 | 100 | AE004091.2:472023-473175 | MexA is the membrane fusion protein of the MexAB-OprM multidrug efflux complex. | aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| NODE_130 length_12490 cov_226.659873 | 1783 | 4887 | MexB | 1/36 | 99 | 99 | L11616:1569-4710 | MexB is the inner membrane multidrug exporter of the efflux complex MexAB-OprM. | aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| NODE_13 length_41230 cov_187.466868 | 21066 | 22229 | MexC | 0/0 | 100 | 100 | U57969:294-1458 | MexC is the membrane fusion protein of the MexCD-OprJ multidrug efflux complex. | aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| NODE_13 length_41230 cov_187.466868 | 22257 | 25388 | MexD | 2/2 | 100 | 99 | U57969:1485-4617 | MexD is the multidrug inner membrane transporter of the MexCD-OprJ complex. | aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| NODE_359 length_4999 cov_151.199512 | 847 | 4035 | MexF | 0/0 | 100 | 100 | AE004091.2:2810008-2813197 | MexF is the multidrug inner membrane transporter of the MexEF-OprN complex. mexF corresponds to 2 loci in Pseudomonas aeruginosa PAO1 (gene name: mexF/mexB) and 4 loci in Pseudomonas aeruginosa LESB58 (gene name: mexD/mexB). | diaminopyrimidine, fluoroquinolone, phenicol |
| NODE_245 length_7749 cov_150.197471 | 2316 | 2762 | mexG | 0/0 | 100 | 100 | AE004091.2:4705955-4706402 | MexG is a membrane protein required for MexGHI-OpmD efflux activity. | acridine_dye, fluoroquinolone, tetracycline |
| NODE_245 length_7749 cov_150.197471 | 2770 | 3882 | mexH | 0/0 | 100 | 100 | AE004091.2:4706409-4707522 | MexH is the membrane fusion protein of the efflux complex MexGHI-OpmD. | acridine_dye, fluoroquinolone, tetracycline |
| NODE_245 length_7749 cov_150.197471 | 3895 | 6984 | mexI | 0/0 | 100 | 100 | AE004091.2:4707534-4710624 | MexI is the inner membrane transporter of the efflux complex MexGHI-OpmD. | acridine_dye, fluoroquinolone, tetracycline |
| NODE_93 length_15954 cov_176.385400 | 12439 | 13542 | mexJ | 0/0 | 100 | 99 | AE004091.2:4120373-4119269 | mexJ is the membrane fusion protein of the MexJK multidrug efflux protein. | macrolide, tetracycline, triclosan |
| NODE_93 length_15954 cov_176.385400 | 9357 | 12434 | mexK | 0/0 | 100 | 100 | AE004091.2:4119265-4116187 | mexK is the inner membrane resistance-nodulation-cell division (RND) transporter in the MexJK multidrug efflux protein. | macrolide, tetracycline, triclosan |
| NODE_93 length_15954 cov_176.385400 | 13638 | 14276 | mexL | 0/0 | 100 | 100 | AE004091.2:4120468-4121107 | MexL is a specific repressor of mexJK transcription and autoregulates its own expression. | macrolide, tetracycline, triclosan |
| NODE_307 length_6069 cov_148.811248 | 5008 | 6069 | mexM | 0/0 | 92 | 99 | AB219523.1:21-1179 | mexM is the membrane fusion protein of the MexMN-OprM multidrug efflux complex. | phenicol |
| NODE_307 length_6069 cov_148.811248 | 1901 | 5011 | mexN | 0/0 | 100 | 99 | AB219523.1:1175-4286 | MexN is the inner membrane transporter of the MexMN-OprM multidrug efflux complex. | phenicol |
| NODE_109 length_13924 cov_168.000794 | 3922 | 5079 | mexP | 0/0 | 100 | 100 | AB219524.1:22-1180 | MexP is the membrane fusion protein of the MexPQ-OpmE multidrug efflux complex | acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline |
| NODE_109 length_13924 cov_168.000794 | 764 | 3925 | mexQ | 0/0 | 100 | 100 | AB219524.1:1176-4338 | MexQ is the inner membrane transporter of the multidrug efflux pump MexPQ-OpmE. | acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline |
| NODE_6 length_67048 cov_195.409073 | 54239 | 55369 | mexV | 0/0 | 100 | 100 | AE004091.2:4903465-4904596 | MexV is the membrane fusion protein of the MexVW-OprM multidrug efflux complex. | acridine_dye, fluoroquinolone, macrolide, phenicol, tetracycline |
| NODE_6 length_67048 cov_195.409073 | 51132 | 54188 | mexW | 0/0 | 100 | 100 | NC_002516.2:4904646-4907703 | MexW is the RND-type membrane protein of the efflux complex MexVW-OprM. | acridine_dye, fluoroquinolone, macrolide, phenicol, tetracycline |
| NODE_184 length_9639 cov_127.200376 | 818 | 3955 | mexY | 8/9 | 100 | 99 | AB015853:1330-4471 | MexY is the RND-type membrane protein of the efflux complex MexXY-OprM. | acridine_dye, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| NODE_425 length_4077 cov_157.503250 | 1 | 2943 | MuxB | 0/0 | 94 | 100 | AE004091.2:2854014-2850882 | MuxB is one of the two necessary RND components in the Pseudomonas aeruginosa efflux pump system MuxABC-OpmB. | aminocoumarin, macrolide, monobactam, tetracycline |
| NODE_193 length_9236 cov_116.799323 | 215 | 3325 | MuxC | 0/0 | 100 | 99 | AE004091.2:2850886-2847775 | MuxC is one of the two necessary RND components of the MuxABC-OpmB efflux pumps system in Pseudomonas aeruginosa. | aminocoumarin, macrolide, monobactam, tetracycline |
| NODE_193 length_9236 cov_116.799323 | 3322 | 4818 | OpmB | 0/0 | 100 | 100 | AE004091.2:2847779-2846282 | OpmB is an outer membrane efflux protein in Pseudomonas aeruginosa that shows functional cooperation with MuxABC to form the efflux pump system MuxABC-OpmB. | aminocoumarin, macrolide, monobactam, tetracycline |
| NODE_34 length_26133 cov_190.234725 | 22097 | 23545 | OpmH | 0/0 | 100 | 98 | AE004091.2:5584100-5585549 | OpmH is an outer membrane efflux protein required for triclosan-specific efflux pump function. | triclosan |
| NODE_13 length_41230 cov_187.466868 | 25394 | 26839 | OprJ | 1/6 | 100 | 99 | U57969:4622-6062 | OprJ is the outer membrane channel component of the MexCD-OprJ multidrug efflux complex. | aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| NODE_130 length_12490 cov_226.659873 | 324 | 1781 | OprM | 0/0 | 100 | 100 | AE004091.2:476332-477790 | OprM is an outer membrane factor protein found in Pseudomonas aeruginosa and Burkholderia vietnamiensis. It is part of the MexAB-OprM MexVW-OprM MexXY-OprM and the AmrAB-OprM complex. | acridine_dye, aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| NODE_71 length_18397 cov_222.597380 | 3843 | 4631 | OXA-50 | 0/0 | 100 | 100 | AY306130:0-789 | OXA-50 is a beta-lactamase found in Pseudomonas aeruginosa. It confers decreased susceptibility to ampicillin and ticarcillin and interestingly to moxalactam and meropenem in P. aeruginosa but not in E. coli. Also confers resistance to piperacillin-tazobactam and cephalotin. | cephalosporin, penam |
| NODE_156 length_10939 cov_163.443749 | 1491 | 2684 | PDC-1 | 0/0 | 100 | 100 | FJ666065:0-1194 | PDC-1 is a beta-lactamase found in Pseudomonas aeruginosa. | carbapenem, cephalosporin, monobactam |
| NODE_37 length_24174 cov_206.866622 | 22787 | 24174 | PmpM | 0/0 | 97 | 100 | AE004091.2:1473980-1472546 | PmpM is a multidrug efflux pump belonging to the MATE family of Pseudomonas aeruginosa. PmpM is an H+ drug antiporter and is the first reported case of an H+ coupled efflux pump in the MATE family. PmpM confers resistance to fluoroquinolones fradiomycin benzalkonium chloride chlorhexidine gluconate ethidium bromide tetraphenylphosphonium chloride (TPPCl) and rhodamine 6G. | aminoglycoside, benzalkonium_chloride, fluoroquinolone |
| NODE_112 length_13675 cov_228.177673 | 2703 | 3341 | Pseudomonas_aeruginosa_catB7 | 0/0 | 100 | 100 | NC_002516.2:780101-779462 | catB7 is a chromosome-encoded variant of the cat gene found in Pseudomonas aeruginosa | phenicol |
| NODE_357 length_5002 cov_123.231269 | 2033 | 2710 | Pseudomonas_aeruginosa_CpxR | 0/0 | 100 | 100 | LT673656.1:1885022-1884344 | CpxR is directly involved in activation of expression of RND efflux pump MexAB-OprM in P. aeruginosa. CpxR is required to enhance mexAB-oprM expression and drug resistance in the absence of repressor MexR. | aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| NODE_269 length_7065 cov_155.314253 | 6433 | 6765 | Pseudomonas_aeruginosa_emrE | 0/0 | 100 | 99 | AE004091.2:5606102-5606435 | EmrE is a small multidrug transporter that functions as a homodimer and that couples the efflux of small polyaromatic cations from the cell with the import of protons down an electrochemical gradient. Confers resistance to tetraphenylphosphonium methyl viologen gentamicin kanamycin and neomycin. | aminoglycoside |
| NODE_106 length_14299 cov_109.697370 | 5095 | 5565 | Pseudomonas_aeruginosa_soxR | 0/0 | 100 | 100 | AE004091.2:2503895-2503424 | SoxR is a redox-sensitive transcriptional activator that induces expression of a small regulon that includes the RND efflux pump-encoding operon mexGHI-opmD. SoxR was shown to be activated by pyocyanin. | acridine_dye, cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan |
| NODE_192 length_9238 cov_176.033293 | 2172 | 3323 | TriA | 0/0 | 100 | 100 | AE004091.2:177306-178458 | TriA is a membrane protein that is fused to TriB and both are required for the triclosan efflux pump function of TriABC-OpmH in P. aeruginosa. | triclosan |
| NODE_242 length_7811 cov_218.509956 | 4426 | 7473 | TriC | 0/0 | 100 | 100 | AE004091.2:179521-182569 | TriC is a resistance nodulation cell division (RND) transporter that is a part of TriABC-OpmH a triclosan-specific efflux protein. | triclosan |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| NODE_71 length_18397 cov_222.597380 | 3843 | 4631 | (Bla)blaOXA-50 | 0/0 | 100 | 99 | AM117128:1-789 | (Bla)blaOXA-50 | NA |
| NODE_156 length_10939 cov_163.443749 | 1491 | 2684 | (Bla)blaPDC-216 | 0/0 | 100 | 100 | MF281081:MF281081 | (Bla)blaPDC-216 | NA |
| NODE_25 length_29638 cov_279.823687 | 3722 | 3919 | (Flq)crpP | 0/0 | 100 | 99 | NG_062203:101-298 | (Flq)crpP | NA |
| NODE_112 length_13675 cov_228.177673 | 2703 | 3341 | (Phe)catB7 | 0/0 | 100 | 100 | AF036933:177-815 | (Phe)catB7 | NA |
Sample-02
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| NODE_142 length_11973 cov_159.985962 | 10590 | 11396 | aph(3’)-IIb_2 | 0/0 | 100 | 99 | CP006832 | aph(3’)-IIb | |
| NODE_6 length_133566 cov_209.735851 | 48114 | 48902 | blaOXA-488_1 | 0/0 | 100 | 99 | CP017969 | blaOXA-488 | |
| NODE_189 length_8399 cov_153.271569 | 5425 | 6618 | blaPAO_4 | 0/0 | 100 | 100 | AY083592 | blaPAO | |
| NODE_70 length_25367 cov_167.397983 | 13253 | 13891 | catB7_1 | 0/0 | 100 | 100 | AF036933 | catB7 | Chloramphenicol |
| NODE_8 length_110146 cov_157.886553 | 19269 | 19676 | fosA_4 | 0/0 | 100 | 99 | ACWU01000146 | fosA | Fosfomycin |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| NODE_142 length_11973 cov_159.985962 | 10590 | 11396 | APH(3’)-IIb | 0/0 | 100 | 98 | X90856:387-1194 | APH(3’)-IIb is a chromosomal-encoded aminoglycoside phosphotransferase in P. aeruginosa | aminoglycoside |
| NODE_74 length_23900 cov_177.187214 | 17890 | 18051 | ArmR | 0/0 | 100 | 100 | AE004091.2:4165880-4165718 | ArmR a 53-amino-acid antirepressor allosterically inhibits MexR dimer-DNA binding by occupying a hydrophobic binding cavity within the center of the MexR dimer. ArmR up-regulation and MexR-ArmR complex formation have previously been shown to upregulate MexAB-OprM. | aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| NODE_122 length_14299 cov_144.295739 | 8600 | 10033 | basS | 0/0 | 100 | 100 | JQ340365:0-1434 | Histidine protein kinase sensor Lipid A modification gene, part of a two-component system involved in polymyxin resistance that senses high extracellular Fe(2+) | peptide |
| NODE_167 length_9807 cov_180.699589 | 1778 | 2986 | bcr-1 | 0/0 | 100 | 100 | CP012901.1:5980365-5979156 | Transmembrane protein which expels bicyclomycin from the cell leading to bicyclomycin resistance. Identified in Pseudomonas aeruginosa strains responsible for outbreaks in Brazil often appearing with blaSPM-1 another bicyclomycin resistance gene | bicyclomycin |
| NODE_8 length_110146 cov_157.886553 | 19269 | 19676 | fosA | 0/0 | 100 | 99 | AE004091.2:1221690-1222098 | An enzyme that confers resistance to fosfomycin in Serratia marcescens by breaking the epoxide ring of the molecule. It depends on the cofactors Manganese (II) and Potassium and uses Glutathione (GSH) as the nucleophilic molecule. In Pseudomonas aeruginosa FosA catalyzes the conjugation of glutathione to carbon-1 of fosfomycin rendering it ineffective as an antibacterial drug. | fosfomycin |
| NODE_38 length_41303 cov_175.169747 | 6434 | 7585 | MexA | 0/0 | 100 | 100 | AE004091.2:472023-473175 | MexA is the membrane fusion protein of the MexAB-OprM multidrug efflux complex. | aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| NODE_38 length_41303 cov_175.169747 | 7601 | 10741 | MexB | 0/0 | 100 | 100 | L11616:1569-4710 | MexB is the inner membrane multidrug exporter of the efflux complex MexAB-OprM. | aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| NODE_10 length_86082 cov_178.434614 | 21150 | 22313 | MexC | 0/0 | 100 | 100 | U57969:294-1458 | MexC is the membrane fusion protein of the MexCD-OprJ multidrug efflux complex. | aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| NODE_10 length_86082 cov_178.434614 | 22341 | 25472 | MexD | 2/2 | 100 | 100 | U57969:1485-4617 | MexD is the multidrug inner membrane transporter of the MexCD-OprJ complex. | aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| NODE_76 length_23570 cov_123.175669 | 18217 | 19461 | MexE | 0/0 | 100 | 100 | AE004091.2:2808742-2809987 | MexE is the membrane fusion protein of the MexEF-OprN multidrug efflux complex. | diaminopyrimidine, fluoroquinolone, phenicol |
| NODE_76 length_23570 cov_123.175669 | 19483 | 22671 | MexF | 0/0 | 100 | 100 | AE004091.2:2810008-2813197 | MexF is the multidrug inner membrane transporter of the MexEF-OprN complex. mexF corresponds to 2 loci in Pseudomonas aeruginosa PAO1 (gene name: mexF/mexB) and 4 loci in Pseudomonas aeruginosa LESB58 (gene name: mexD/mexB). | diaminopyrimidine, fluoroquinolone, phenicol |
| NODE_150 length_11267 cov_169.808400 | 8513 | 8959 | mexG | 0/0 | 100 | 100 | AE004091.2:4705955-4706402 | MexG is a membrane protein required for MexGHI-OpmD efflux activity. | acridine_dye, fluoroquinolone, tetracycline |
| NODE_150 length_11267 cov_169.808400 | 7393 | 8505 | mexH | 0/0 | 100 | 100 | AE004091.2:4706409-4707522 | MexH is the membrane fusion protein of the efflux complex MexGHI-OpmD. | acridine_dye, fluoroquinolone, tetracycline |
| NODE_150 length_11267 cov_169.808400 | 4291 | 7380 | mexI | 0/0 | 100 | 100 | AE004091.2:4707534-4710624 | MexI is the inner membrane transporter of the efflux complex MexGHI-OpmD. | acridine_dye, fluoroquinolone, tetracycline |
| NODE_5 length_147739 cov_174.536949 | 119247 | 120350 | mexJ | 0/0 | 100 | 99 | AE004091.2:4120373-4119269 | mexJ is the membrane fusion protein of the MexJK multidrug efflux protein. | macrolide, tetracycline, triclosan |
| NODE_5 length_147739 cov_174.536949 | 116165 | 119242 | mexK | 0/0 | 100 | 99 | AE004091.2:4119265-4116187 | mexK is the inner membrane resistance-nodulation-cell division (RND) transporter in the MexJK multidrug efflux protein. | macrolide, tetracycline, triclosan |
| NODE_5 length_147739 cov_174.536949 | 120446 | 121084 | mexL | 0/0 | 100 | 100 | AE004091.2:4120468-4121107 | MexL is a specific repressor of mexJK transcription and autoregulates its own expression. | macrolide, tetracycline, triclosan |
| NODE_32 length_45263 cov_147.525694 | 20618 | 21775 | mexM | 0/0 | 100 | 99 | AB219523.1:21-1179 | mexM is the membrane fusion protein of the MexMN-OprM multidrug efflux complex. | phenicol |
| NODE_32 length_45263 cov_147.525694 | 21772 | 24882 | mexN | 0/0 | 100 | 99 | AB219523.1:1175-4286 | MexN is the inner membrane transporter of the MexMN-OprM multidrug efflux complex. | phenicol |
| NODE_44 length_36644 cov_168.104575 | 23530 | 24687 | mexP | 0/0 | 100 | 99 | AB219524.1:22-1180 | MexP is the membrane fusion protein of the MexPQ-OpmE multidrug efflux complex | acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline |
| NODE_44 length_36644 cov_168.104575 | 24684 | 27845 | mexQ | 0/0 | 100 | 99 | AB219524.1:1176-4338 | MexQ is the inner membrane transporter of the multidrug efflux pump MexPQ-OpmE. | acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline |
| NODE_7 length_127946 cov_174.807256 | 20015 | 21145 | mexV | 0/0 | 100 | 99 | AE004091.2:4903465-4904596 | MexV is the membrane fusion protein of the MexVW-OprM multidrug efflux complex. | acridine_dye, fluoroquinolone, macrolide, phenicol, tetracycline |
| NODE_7 length_127946 cov_174.807256 | 21196 | 24252 | mexW | 0/0 | 100 | 100 | NC_002516.2:4904646-4907703 | MexW is the RND-type membrane protein of the efflux complex MexVW-OprM. | acridine_dye, fluoroquinolone, macrolide, phenicol, tetracycline |
| NODE_26 length_51655 cov_150.708519 | 14113 | 15292 | mexX | 7/10 | 100 | 98 | AB015853:145-1315 | MexX is the membrane fusion protein of the MexXY-OprM multidrug efflux complex. | acridine_dye, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| NODE_26 length_51655 cov_150.708519 | 10960 | 14097 | mexY | 8/9 | 100 | 99 | AB015853:1330-4471 | MexY is the RND-type membrane protein of the efflux complex MexXY-OprM. | acridine_dye, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| NODE_72 length_24470 cov_144.132415 | 11006 | 12286 | MuxA | 0/0 | 100 | 100 | AE004091.2:2855291-2854010 | MuxA is a membrane fusion protein component of the efflux pump system MuxABC-OpmB in Pseudomonas aeruginosa. | aminocoumarin, macrolide, monobactam, tetracycline |
| NODE_72 length_24470 cov_144.132415 | 12283 | 15414 | MuxB | 0/0 | 100 | 100 | AE004091.2:2854014-2850882 | MuxB is one of the two necessary RND components in the Pseudomonas aeruginosa efflux pump system MuxABC-OpmB. | aminocoumarin, macrolide, monobactam, tetracycline |
| NODE_72 length_24470 cov_144.132415 | 15411 | 18521 | MuxC | 0/0 | 100 | 100 | AE004091.2:2850886-2847775 | MuxC is one of the two necessary RND components of the MuxABC-OpmB efflux pumps system in Pseudomonas aeruginosa. | aminocoumarin, macrolide, monobactam, tetracycline |
| NODE_72 length_24470 cov_144.132415 | 18518 | 20014 | OpmB | 0/0 | 100 | 100 | AE004091.2:2847779-2846282 | OpmB is an outer membrane efflux protein in Pseudomonas aeruginosa that shows functional cooperation with MuxABC to form the efflux pump system MuxABC-OpmB. | aminocoumarin, macrolide, monobactam, tetracycline |
| NODE_150 length_11267 cov_169.808400 | 2831 | 4294 | opmD | 0/0 | 100 | 100 | AE004091.2:4710620-4712084 | OpmD is the outer membrane channel protein of the efflux complex MexGHI-OpmD. | acridine_dye, fluoroquinolone, tetracycline |
| NODE_44 length_36644 cov_168.104575 | 27842 | 29317 | opmE | 0/0 | 100 | 99 | AB219524.1:4334-5810 | opmE is an outer membrane factor protein that is part of the multidrug efflux pump MexPQ-OpmE. | acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline |
| NODE_49 length_33242 cov_162.815076 | 2600 | 4048 | OpmH | 0/0 | 100 | 97 | AE004091.2:5584100-5585549 | OpmH is an outer membrane efflux protein required for triclosan-specific efflux pump function. | triclosan |
| NODE_10 length_86082 cov_178.434614 | 25478 | 26917 | OprJ | 0/0 | 100 | 99 | U57969:4622-6062 | OprJ is the outer membrane channel component of the MexCD-OprJ multidrug efflux complex. | aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| NODE_38 length_41303 cov_175.169747 | 10743 | 12200 | OprM | 0/0 | 100 | 100 | AE004091.2:476332-477790 | OprM is an outer membrane factor protein found in Pseudomonas aeruginosa and Burkholderia vietnamiensis. It is part of the MexAB-OprM MexVW-OprM MexXY-OprM and the AmrAB-OprM complex. | acridine_dye, aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| NODE_6 length_133566 cov_209.735851 | 48114 | 48902 | OXA-488 | 0/0 | 100 | 99 | SMRY02000082.1:18008-17219 | Assigned by Lahey’s list of beta-lactamases no accessions or other information available | cephalosporin, penam |
| NODE_189 length_8399 cov_153.271569 | 5425 | 6618 | PDC-3 | 0/0 | 100 | 100 | FJ666066:0-1194 | PDC-3 is a extended-spectrum beta-lactamase found in Pseudomonas aeruginosa. | carbapenem, cephalosporin, monobactam |
| NODE_33 length_45011 cov_156.195086 | 37961 | 39394 | PmpM | 0/0 | 100 | 100 | AE004091.2:1473980-1472546 | PmpM is a multidrug efflux pump belonging to the MATE family of Pseudomonas aeruginosa. PmpM is an H+ drug antiporter and is the first reported case of an H+ coupled efflux pump in the MATE family. PmpM confers resistance to fluoroquinolones fradiomycin benzalkonium chloride chlorhexidine gluconate ethidium bromide tetraphenylphosphonium chloride (TPPCl) and rhodamine 6G. | aminoglycoside, benzalkonium_chloride, fluoroquinolone |
| NODE_70 length_25367 cov_167.397983 | 13253 | 13891 | Pseudomonas_aeruginosa_catB7 | 0/0 | 100 | 100 | NC_002516.2:780101-779462 | catB7 is a chromosome-encoded variant of the cat gene found in Pseudomonas aeruginosa | phenicol |
| NODE_125 length_13912 cov_150.654933 | 10935 | 11612 | Pseudomonas_aeruginosa_CpxR | 0/0 | 100 | 100 | LT673656.1:1885022-1884344 | CpxR is directly involved in activation of expression of RND efflux pump MexAB-OprM in P. aeruginosa. CpxR is required to enhance mexAB-oprM expression and drug resistance in the absence of repressor MexR. | aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| NODE_45 length_36189 cov_177.209543 | 335 | 667 | Pseudomonas_aeruginosa_emrE | 0/0 | 100 | 99 | AE004091.2:5606102-5606435 | EmrE is a small multidrug transporter that functions as a homodimer and that couples the efflux of small polyaromatic cations from the cell with the import of protons down an electrochemical gradient. Confers resistance to tetraphenylphosphonium methyl viologen gentamicin kanamycin and neomycin. | aminoglycoside |
| NODE_66 length_26778 cov_136.616007 | 17533 | 18003 | Pseudomonas_aeruginosa_soxR | 0/0 | 100 | 100 | AE004091.2:2503895-2503424 | SoxR is a redox-sensitive transcriptional activator that induces expression of a small regulon that includes the RND efflux pump-encoding operon mexGHI-opmD. SoxR was shown to be activated by pyocyanin. | acridine_dye, cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan |
| NODE_106 length_16909 cov_177.197362 | 8639 | 9790 | TriA | 0/0 | 100 | 100 | AE004091.2:177306-178458 | TriA is a membrane protein that is fused to TriB and both are required for the triclosan efflux pump function of TriABC-OpmH in P. aeruginosa. | triclosan |
| NODE_106 length_16909 cov_177.197362 | 7572 | 8642 | TriB | 0/0 | 100 | 100 | AE004091.2:178454-179525 | TriB is a membrane protein that is fused to TriA and both are required for the triclosan efflux pump function of TriABC-OpmH in P. aeruginosa. | triclosan |
| NODE_106 length_16909 cov_177.197362 | 4528 | 7575 | TriC | 0/0 | 100 | 100 | AE004091.2:179521-182569 | TriC is a resistance nodulation cell division (RND) transporter that is a part of TriABC-OpmH a triclosan-specific efflux protein. | triclosan |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| NODE_142 length_11973 cov_159.985962 | 10590 | 11396 | (AGly)aph(3’’)-IIb | 0/0 | 100 | 98 | X90856:388-1194 | (AGly)aph(3’’)-IIb | NA |
| NODE_6 length_133566 cov_209.735851 | 48114 | 48902 | (Bla)blaOXA-50 | 0/0 | 100 | 99 | AM117128:1-789 | (Bla)blaOXA-50 | NA |
| NODE_189 length_8399 cov_153.271569 | 5425 | 6618 | (Bla)blaPDC-195 | 0/0 | 100 | 99 | MF098287:1-1194 | (Bla)blaPDC-195 | NA |
| NODE_167 length_9807 cov_180.699589 | 1778 | 2986 | (Phe)bcr1 | 0/0 | 100 | 100 | NG_055652:101-1309 | (Phe)bcr1 | NA |
| NODE_70 length_25367 cov_167.397983 | 13253 | 13891 | (Phe)catB7 | 0/0 | 100 | 100 | AF036933:177-815 | (Phe)catB7 | NA |
Sample-03
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| NODE_37 length_60185 cov_161.529863 | 27272 | 28078 | aph(3’)-IIb_2 | 0/0 | 100 | 99 | CP006832 | aph(3’)-IIb | |
| NODE_8 length_133594 cov_194.288615 | 84670 | 85458 | blaOXA-488_1 | 0/0 | 100 | 99 | CP017969 | blaOXA-488 | |
| NODE_37 length_60185 cov_161.529863 | 13723 | 14916 | blaPAO_4 | 0/0 | 100 | 100 | AY083592 | blaPAO | |
| NODE_54 length_41450 cov_144.143789 | 11477 | 12115 | catB7_1 | 0/0 | 100 | 100 | AF036933 | catB7 | Chloramphenicol |
| NODE_6 length_168075 cov_138.083822 | 125987 | 126394 | fosA_4 | 0/0 | 100 | 99 | ACWU01000146 | fosA | Fosfomycin |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| NODE_37 length_60185 cov_161.529863 | 27272 | 28078 | APH(3’)-IIb | 0/0 | 100 | 98 | X90856:387-1194 | APH(3’)-IIb is a chromosomal-encoded aminoglycoside phosphotransferase in P. aeruginosa | aminoglycoside |
| NODE_2 length_243198 cov_166.468787 | 68125 | 68286 | ArmR | 0/0 | 100 | 100 | AE004091.2:4165880-4165718 | ArmR a 53-amino-acid antirepressor allosterically inhibits MexR dimer-DNA binding by occupying a hydrophobic binding cavity within the center of the MexR dimer. ArmR up-regulation and MexR-ArmR complex formation have previously been shown to upregulate MexAB-OprM. | aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| NODE_32 length_66634 cov_152.102469 | 56176 | 58164 | arnA | 0/0 | 100 | 99 | AE004091.2:3982020-3984009 | arnA modifies lipid A with 4-amino-4-deoxy-L-arabinose (Ara4N) which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. arnA is found in E. coli and P. aeruginosa. | peptide |
| NODE_96 length_14333 cov_140.983586 | 4293 | 5726 | basS | 0/0 | 100 | 100 | JQ340365:0-1434 | Histidine protein kinase sensor Lipid A modification gene, part of a two-component system involved in polymyxin resistance that senses high extracellular Fe(2+) | peptide |
| NODE_37 length_60185 cov_161.529863 | 44783 | 45991 | bcr-1 | 0/0 | 100 | 100 | CP012901.1:5980365-5979156 | Transmembrane protein which expels bicyclomycin from the cell leading to bicyclomycin resistance. Identified in Pseudomonas aeruginosa strains responsible for outbreaks in Brazil often appearing with blaSPM-1 another bicyclomycin resistance gene | bicyclomycin |
| NODE_6 length_168075 cov_138.083822 | 125987 | 126394 | fosA | 0/0 | 100 | 99 | AE004091.2:1221690-1222098 | An enzyme that confers resistance to fosfomycin in Serratia marcescens by breaking the epoxide ring of the molecule. It depends on the cofactors Manganese (II) and Potassium and uses Glutathione (GSH) as the nucleophilic molecule. In Pseudomonas aeruginosa FosA catalyzes the conjugation of glutathione to carbon-1 of fosfomycin rendering it ineffective as an antibacterial drug. | fosfomycin |
| NODE_12 length_102898 cov_165.814289 | 6450 | 7601 | MexA | 0/0 | 100 | 100 | AE004091.2:472023-473175 | MexA is the membrane fusion protein of the MexAB-OprM multidrug efflux complex. | aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| NODE_12 length_102898 cov_165.814289 | 7617 | 10757 | MexB | 0/0 | 100 | 100 | L11616:1569-4710 | MexB is the inner membrane multidrug exporter of the efflux complex MexAB-OprM. | aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| NODE_4 length_177930 cov_154.448393 | 32501 | 33664 | MexC | 0/0 | 100 | 100 | U57969:294-1458 | MexC is the membrane fusion protein of the MexCD-OprJ multidrug efflux complex. | aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| NODE_4 length_177930 cov_154.448393 | 33692 | 36823 | MexD | 2/2 | 100 | 100 | U57969:1485-4617 | MexD is the multidrug inner membrane transporter of the MexCD-OprJ complex. | aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| NODE_22 length_86623 cov_127.798165 | 28461 | 29705 | MexE | 0/0 | 100 | 100 | AE004091.2:2808742-2809987 | MexE is the membrane fusion protein of the MexEF-OprN multidrug efflux complex. | diaminopyrimidine, fluoroquinolone, phenicol |
| NODE_22 length_86623 cov_127.798165 | 29727 | 32915 | MexF | 0/0 | 100 | 100 | AE004091.2:2810008-2813197 | MexF is the multidrug inner membrane transporter of the MexEF-OprN complex. mexF corresponds to 2 loci in Pseudomonas aeruginosa PAO1 (gene name: mexF/mexB) and 4 loci in Pseudomonas aeruginosa LESB58 (gene name: mexD/mexB). | diaminopyrimidine, fluoroquinolone, phenicol |
| NODE_80 length_19077 cov_156.055842 | 8513 | 8959 | mexG | 0/0 | 100 | 100 | AE004091.2:4705955-4706402 | MexG is a membrane protein required for MexGHI-OpmD efflux activity. | acridine_dye, fluoroquinolone, tetracycline |
| NODE_80 length_19077 cov_156.055842 | 7393 | 8505 | mexH | 0/0 | 100 | 100 | AE004091.2:4706409-4707522 | MexH is the membrane fusion protein of the efflux complex MexGHI-OpmD. | acridine_dye, fluoroquinolone, tetracycline |
| NODE_80 length_19077 cov_156.055842 | 4291 | 7380 | mexI | 0/0 | 100 | 100 | AE004091.2:4707534-4710624 | MexI is the inner membrane transporter of the efflux complex MexGHI-OpmD. | acridine_dye, fluoroquinolone, tetracycline |
| NODE_2 length_243198 cov_166.468787 | 113623 | 114726 | mexJ | 0/0 | 100 | 99 | AE004091.2:4120373-4119269 | mexJ is the membrane fusion protein of the MexJK multidrug efflux protein. | macrolide, tetracycline, triclosan |
| NODE_2 length_243198 cov_166.468787 | 114731 | 117808 | mexK | 0/0 | 100 | 99 | AE004091.2:4119265-4116187 | mexK is the inner membrane resistance-nodulation-cell division (RND) transporter in the MexJK multidrug efflux protein. | macrolide, tetracycline, triclosan |
| NODE_2 length_243198 cov_166.468787 | 112889 | 113527 | mexL | 0/0 | 100 | 100 | AE004091.2:4120468-4121107 | MexL is a specific repressor of mexJK transcription and autoregulates its own expression. | macrolide, tetracycline, triclosan |
| NODE_16 length_99895 cov_129.085335 | 78102 | 79259 | mexM | 0/0 | 100 | 99 | AB219523.1:21-1179 | mexM is the membrane fusion protein of the MexMN-OprM multidrug efflux complex. | phenicol |
| NODE_16 length_99895 cov_129.085335 | 74995 | 78105 | mexN | 0/0 | 100 | 99 | AB219523.1:1175-4286 | MexN is the inner membrane transporter of the MexMN-OprM multidrug efflux complex. | phenicol |
| NODE_32 length_66634 cov_152.102469 | 16810 | 17967 | mexP | 0/0 | 100 | 99 | AB219524.1:22-1180 | MexP is the membrane fusion protein of the MexPQ-OpmE multidrug efflux complex | acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline |
| NODE_32 length_66634 cov_152.102469 | 13652 | 16813 | mexQ | 0/0 | 100 | 99 | AB219524.1:1176-4338 | MexQ is the inner membrane transporter of the multidrug efflux pump MexPQ-OpmE. | acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline |
| NODE_5 length_174794 cov_144.356840 | 106803 | 107933 | mexV | 0/0 | 100 | 99 | AE004091.2:4903465-4904596 | MexV is the membrane fusion protein of the MexVW-OprM multidrug efflux complex. | acridine_dye, fluoroquinolone, macrolide, phenicol, tetracycline |
| NODE_5 length_174794 cov_144.356840 | 103696 | 106752 | mexW | 0/0 | 100 | 100 | NC_002516.2:4904646-4907703 | MexW is the RND-type membrane protein of the efflux complex MexVW-OprM. | acridine_dye, fluoroquinolone, macrolide, phenicol, tetracycline |
| NODE_28 length_78216 cov_130.981175 | 40479 | 41658 | mexX | 7/10 | 100 | 98 | AB015853:145-1315 | MexX is the membrane fusion protein of the MexXY-OprM multidrug efflux complex. | acridine_dye, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| NODE_28 length_78216 cov_130.981175 | 37326 | 40463 | mexY | 8/9 | 100 | 99 | AB015853:1330-4471 | MexY is the RND-type membrane protein of the efflux complex MexXY-OprM. | acridine_dye, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| NODE_22 length_86623 cov_127.798165 | 73729 | 75009 | MuxA | 0/0 | 100 | 100 | AE004091.2:2855291-2854010 | MuxA is a membrane fusion protein component of the efflux pump system MuxABC-OpmB in Pseudomonas aeruginosa. | aminocoumarin, macrolide, monobactam, tetracycline |
| NODE_22 length_86623 cov_127.798165 | 70601 | 73732 | MuxB | 0/0 | 100 | 100 | AE004091.2:2854014-2850882 | MuxB is one of the two necessary RND components in the Pseudomonas aeruginosa efflux pump system MuxABC-OpmB. | aminocoumarin, macrolide, monobactam, tetracycline |
| NODE_22 length_86623 cov_127.798165 | 67494 | 70604 | MuxC | 0/0 | 100 | 100 | AE004091.2:2850886-2847775 | MuxC is one of the two necessary RND components of the MuxABC-OpmB efflux pumps system in Pseudomonas aeruginosa. | aminocoumarin, macrolide, monobactam, tetracycline |
| NODE_22 length_86623 cov_127.798165 | 66001 | 67497 | OpmB | 0/0 | 100 | 100 | AE004091.2:2847779-2846282 | OpmB is an outer membrane efflux protein in Pseudomonas aeruginosa that shows functional cooperation with MuxABC to form the efflux pump system MuxABC-OpmB. | aminocoumarin, macrolide, monobactam, tetracycline |
| NODE_80 length_19077 cov_156.055842 | 2831 | 4294 | opmD | 0/0 | 100 | 100 | AE004091.2:4710620-4712084 | OpmD is the outer membrane channel protein of the efflux complex MexGHI-OpmD. | acridine_dye, fluoroquinolone, tetracycline |
| NODE_32 length_66634 cov_152.102469 | 12180 | 13655 | opmE | 0/0 | 100 | 99 | AB219524.1:4334-5810 | opmE is an outer membrane factor protein that is part of the multidrug efflux pump MexPQ-OpmE. | acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline |
| NODE_61 length_33269 cov_153.623162 | 2614 | 4062 | OpmH | 0/0 | 100 | 97 | AE004091.2:5584100-5585549 | OpmH is an outer membrane efflux protein required for triclosan-specific efflux pump function. | triclosan |
| NODE_4 length_177930 cov_154.448393 | 36829 | 38268 | OprJ | 0/0 | 100 | 99 | U57969:4622-6062 | OprJ is the outer membrane channel component of the MexCD-OprJ multidrug efflux complex. | aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| NODE_12 length_102898 cov_165.814289 | 10759 | 12216 | OprM | 0/0 | 100 | 100 | AE004091.2:476332-477790 | OprM is an outer membrane factor protein found in Pseudomonas aeruginosa and Burkholderia vietnamiensis. It is part of the MexAB-OprM MexVW-OprM MexXY-OprM and the AmrAB-OprM complex. | acridine_dye, aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| NODE_22 length_86623 cov_127.798165 | 32912 | 34330 | OprN | 0/0 | 100 | 100 | AE004091.2:2813193-2814612 | OprN is the outer membrane channel component of the MexEF-OprN multidrug efflux complex. | diaminopyrimidine, fluoroquinolone, phenicol |
| NODE_8 length_133594 cov_194.288615 | 84670 | 85458 | OXA-488 | 0/0 | 100 | 99 | SMRY02000082.1:18008-17219 | Assigned by Lahey’s list of beta-lactamases no accessions or other information available | cephalosporin, penam |
| NODE_37 length_60185 cov_161.529863 | 13723 | 14916 | PDC-3 | 0/0 | 100 | 100 | FJ666066:0-1194 | PDC-3 is a extended-spectrum beta-lactamase found in Pseudomonas aeruginosa. | carbapenem, cephalosporin, monobactam |
| NODE_51 length_45020 cov_132.845960 | 37952 | 39385 | PmpM | 0/0 | 100 | 100 | AE004091.2:1473980-1472546 | PmpM is a multidrug efflux pump belonging to the MATE family of Pseudomonas aeruginosa. PmpM is an H+ drug antiporter and is the first reported case of an H+ coupled efflux pump in the MATE family. PmpM confers resistance to fluoroquinolones fradiomycin benzalkonium chloride chlorhexidine gluconate ethidium bromide tetraphenylphosphonium chloride (TPPCl) and rhodamine 6G. | aminoglycoside, benzalkonium_chloride, fluoroquinolone |
| NODE_54 length_41450 cov_144.143789 | 11477 | 12115 | Pseudomonas_aeruginosa_catB7 | 0/0 | 100 | 100 | NC_002516.2:780101-779462 | catB7 is a chromosome-encoded variant of the cat gene found in Pseudomonas aeruginosa | phenicol |
| NODE_21 length_86939 cov_152.332608 | 17461 | 18138 | Pseudomonas_aeruginosa_CpxR | 0/0 | 100 | 100 | LT673656.1:1885022-1884344 | CpxR is directly involved in activation of expression of RND efflux pump MexAB-OprM in P. aeruginosa. CpxR is required to enhance mexAB-oprM expression and drug resistance in the absence of repressor MexR. | aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| NODE_23 length_86525 cov_160.666042 | 68651 | 68983 | Pseudomonas_aeruginosa_emrE | 0/0 | 100 | 99 | AE004091.2:5606102-5606435 | EmrE is a small multidrug transporter that functions as a homodimer and that couples the efflux of small polyaromatic cations from the cell with the import of protons down an electrochemical gradient. Confers resistance to tetraphenylphosphonium methyl viologen gentamicin kanamycin and neomycin. | aminoglycoside |
| NODE_66 length_30074 cov_132.830516 | 19506 | 19976 | Pseudomonas_aeruginosa_soxR | 0/0 | 100 | 100 | AE004091.2:2503895-2503424 | SoxR is a redox-sensitive transcriptional activator that induces expression of a small regulon that includes the RND efflux pump-encoding operon mexGHI-opmD. SoxR was shown to be activated by pyocyanin. | acridine_dye, cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan |
| NODE_67 length_29059 cov_165.665931 | 21213 | 22364 | TriA | 0/0 | 100 | 100 | AE004091.2:177306-178458 | TriA is a membrane protein that is fused to TriB and both are required for the triclosan efflux pump function of TriABC-OpmH in P. aeruginosa. | triclosan |
| NODE_67 length_29059 cov_165.665931 | 20146 | 21216 | TriB | 0/0 | 100 | 100 | AE004091.2:178454-179525 | TriB is a membrane protein that is fused to TriA and both are required for the triclosan efflux pump function of TriABC-OpmH in P. aeruginosa. | triclosan |
| NODE_67 length_29059 cov_165.665931 | 17102 | 20149 | TriC | 0/0 | 100 | 100 | AE004091.2:179521-182569 | TriC is a resistance nodulation cell division (RND) transporter that is a part of TriABC-OpmH a triclosan-specific efflux protein. | triclosan |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| NODE_37 length_60185 cov_161.529863 | 27272 | 28078 | (AGly)aph(3’’)-IIb | 0/0 | 100 | 98 | X90856:388-1194 | (AGly)aph(3’’)-IIb | NA |
| NODE_8 length_133594 cov_194.288615 | 84670 | 85458 | (Bla)blaOXA-50 | 0/0 | 100 | 99 | AM117128:1-789 | (Bla)blaOXA-50 | NA |
| NODE_37 length_60185 cov_161.529863 | 13723 | 14916 | (Bla)blaPDC-195 | 0/0 | 100 | 99 | MF098287:1-1194 | (Bla)blaPDC-195 | NA |
| NODE_37 length_60185 cov_161.529863 | 44783 | 45991 | (Phe)bcr1 | 0/0 | 100 | 100 | NG_055652:101-1309 | (Phe)bcr1 | NA |
| NODE_54 length_41450 cov_144.143789 | 11477 | 12115 | (Phe)catB7 | 0/0 | 100 | 100 | AF036933:177-815 | (Phe)catB7 | NA |
Sample-04
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| NODE_10 length_155941 cov_147.614202 | 53362 | 54168 | aph(3’)-IIb_2 | 0/0 | 100 | 99 | CP006832 | aph(3’)-IIb | |
| NODE_3 length_248714 cov_177.247984 | 121439 | 122227 | blaOXA-50_1 | 0/0 | 100 | 100 | AY306130 | blaOXA-50 | Amoxicillin, Ampicillin |
| NODE_10 length_155941 cov_147.614202 | 66510 | 67703 | blaPAO_1 | 0/0 | 100 | 100 | AY083595 | blaPAO | |
| NODE_64 length_24414 cov_138.449973 | 18540 | 19178 | catB7_1 | 0/0 | 100 | 100 | AF036933 | catB7 | Chloramphenicol |
| NODE_127 length_7264 cov_162.301377 | 1 | 182 | crpP_1 | 0/0 | 92 | 99 | HM560971 | crpP | Ciprofloxacin |
| NODE_11 length_144045 cov_142.265899 | 120595 | 121002 | fosA_4 | 0/0 | 100 | 99 | ACWU01000146 | fosA | Fosfomycin |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| NODE_10 length_155941 cov_147.614202 | 53362 | 54168 | APH(3’)-IIb | 0/0 | 100 | 98 | X90856:387-1194 | APH(3’)-IIb is a chromosomal-encoded aminoglycoside phosphotransferase in P. aeruginosa | aminoglycoside |
| NODE_1 length_342707 cov_147.419969 | 55636 | 55797 | ArmR | 0/0 | 100 | 100 | AE004091.2:4165880-4165718 | ArmR a 53-amino-acid antirepressor allosterically inhibits MexR dimer-DNA binding by occupying a hydrophobic binding cavity within the center of the MexR dimer. ArmR up-regulation and MexR-ArmR complex formation have previously been shown to upregulate MexAB-OprM. | aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| NODE_1 length_342707 cov_147.419969 | 240298 | 242286 | arnA | 0/0 | 100 | 100 | AE004091.2:3982020-3984009 | arnA modifies lipid A with 4-amino-4-deoxy-L-arabinose (Ara4N) which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. arnA is found in E. coli and P. aeruginosa. | peptide |
| NODE_56 length_30113 cov_151.958550 | 4300 | 5733 | basS | 0/0 | 100 | 100 | JQ340365:0-1434 | Histidine protein kinase sensor Lipid A modification gene, part of a two-component system involved in polymyxin resistance that senses high extracellular Fe(2+) | peptide |
| NODE_10 length_155941 cov_147.614202 | 35449 | 36657 | bcr-1 | 0/0 | 100 | 100 | CP012901.1:5980365-5979156 | Transmembrane protein which expels bicyclomycin from the cell leading to bicyclomycin resistance. Identified in Pseudomonas aeruginosa strains responsible for outbreaks in Brazil often appearing with blaSPM-1 another bicyclomycin resistance gene | bicyclomycin |
| NODE_127 length_7264 cov_162.301377 | 1 | 182 | CrpP | 0/0 | 92 | 99 | HM560971.1:119269-119071 | A plasmid-encoded ciprofloxacin resistance protein identified from a Pseudomonas aeruginosa plasmid. CrpP confers resistance to ciprofloxacin by antibiotic inactivation through phosphorylation. Described by Chavez-Jacobo et al. 2018. | fluoroquinolone |
| NODE_11 length_144045 cov_142.265899 | 120595 | 121002 | fosA | 0/0 | 100 | 99 | AE004091.2:1221690-1222098 | An enzyme that confers resistance to fosfomycin in Serratia marcescens by breaking the epoxide ring of the molecule. It depends on the cofactors Manganese (II) and Potassium and uses Glutathione (GSH) as the nucleophilic molecule. In Pseudomonas aeruginosa FosA catalyzes the conjugation of glutathione to carbon-1 of fosfomycin rendering it ineffective as an antibacterial drug. | fosfomycin |
| NODE_13 length_141417 cov_160.200545 | 83279 | 84430 | MexA | 0/0 | 100 | 100 | AE004091.2:472023-473175 | MexA is the membrane fusion protein of the MexAB-OprM multidrug efflux complex. | aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| NODE_13 length_141417 cov_160.200545 | 84446 | 87582 | MexB | 1/4 | 100 | 100 | L11616:1569-4710 | MexB is the inner membrane multidrug exporter of the efflux complex MexAB-OprM. | aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| NODE_9 length_164743 cov_159.628527 | 70315 | 71478 | MexC | 0/0 | 100 | 100 | U57969:294-1458 | MexC is the membrane fusion protein of the MexCD-OprJ multidrug efflux complex. | aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| NODE_9 length_164743 cov_159.628527 | 67156 | 70287 | MexD | 2/2 | 100 | 99 | U57969:1485-4617 | MexD is the multidrug inner membrane transporter of the MexCD-OprJ complex. | aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| NODE_25 length_83899 cov_126.457422 | 76390 | 77634 | MexE | 0/0 | 100 | 100 | AE004091.2:2808742-2809987 | MexE is the membrane fusion protein of the MexEF-OprN multidrug efflux complex. | diaminopyrimidine, fluoroquinolone, phenicol |
| NODE_25 length_83899 cov_126.457422 | 73180 | 76368 | MexF | 0/0 | 100 | 100 | AE004091.2:2810008-2813197 | MexF is the multidrug inner membrane transporter of the MexEF-OprN complex. mexF corresponds to 2 loci in Pseudomonas aeruginosa PAO1 (gene name: mexF/mexB) and 4 loci in Pseudomonas aeruginosa LESB58 (gene name: mexD/mexB). | diaminopyrimidine, fluoroquinolone, phenicol |
| NODE_79 length_19089 cov_147.157059 | 8513 | 8959 | mexG | 0/0 | 100 | 100 | AE004091.2:4705955-4706402 | MexG is a membrane protein required for MexGHI-OpmD efflux activity. | acridine_dye, fluoroquinolone, tetracycline |
| NODE_79 length_19089 cov_147.157059 | 7393 | 8505 | mexH | 0/0 | 100 | 100 | AE004091.2:4706409-4707522 | MexH is the membrane fusion protein of the efflux complex MexGHI-OpmD. | acridine_dye, fluoroquinolone, tetracycline |
| NODE_79 length_19089 cov_147.157059 | 4291 | 7380 | mexI | 0/0 | 100 | 100 | AE004091.2:4707534-4710624 | MexI is the inner membrane transporter of the efflux complex MexGHI-OpmD. | acridine_dye, fluoroquinolone, tetracycline |
| NODE_1 length_342707 cov_147.419969 | 101140 | 102243 | mexJ | 0/0 | 100 | 99 | AE004091.2:4120373-4119269 | mexJ is the membrane fusion protein of the MexJK multidrug efflux protein. | macrolide, tetracycline, triclosan |
| NODE_1 length_342707 cov_147.419969 | 102248 | 105325 | mexK | 0/0 | 100 | 100 | AE004091.2:4119265-4116187 | mexK is the inner membrane resistance-nodulation-cell division (RND) transporter in the MexJK multidrug efflux protein. | macrolide, tetracycline, triclosan |
| NODE_1 length_342707 cov_147.419969 | 100406 | 101044 | mexL | 0/0 | 100 | 100 | AE004091.2:4120468-4121107 | MexL is a specific repressor of mexJK transcription and autoregulates its own expression. | macrolide, tetracycline, triclosan |
| NODE_8 length_175701 cov_140.490440 | 94952 | 96109 | mexM | 0/0 | 100 | 99 | AB219523.1:21-1179 | mexM is the membrane fusion protein of the MexMN-OprM multidrug efflux complex. | phenicol |
| NODE_8 length_175701 cov_140.490440 | 96106 | 99216 | mexN | 0/0 | 100 | 99 | AB219523.1:1175-4286 | MexN is the inner membrane transporter of the MexMN-OprM multidrug efflux complex. | phenicol |
| NODE_1 length_342707 cov_147.419969 | 280495 | 281652 | mexP | 0/0 | 100 | 100 | AB219524.1:22-1180 | MexP is the membrane fusion protein of the MexPQ-OpmE multidrug efflux complex | acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline |
| NODE_1 length_342707 cov_147.419969 | 281649 | 284810 | mexQ | 0/0 | 100 | 100 | AB219524.1:1176-4338 | MexQ is the inner membrane transporter of the multidrug efflux pump MexPQ-OpmE. | acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline |
| NODE_5 length_217641 cov_149.017609 | 106820 | 107950 | mexV | 0/0 | 100 | 100 | AE004091.2:4903465-4904596 | MexV is the membrane fusion protein of the MexVW-OprM multidrug efflux complex. | acridine_dye, fluoroquinolone, macrolide, phenicol, tetracycline |
| NODE_5 length_217641 cov_149.017609 | 103713 | 106769 | mexW | 0/0 | 100 | 100 | NC_002516.2:4904646-4907703 | MexW is the RND-type membrane protein of the efflux complex MexVW-OprM. | acridine_dye, fluoroquinolone, macrolide, phenicol, tetracycline |
| NODE_37 length_55893 cov_127.347965 | 14821 | 16000 | mexX | 7/10 | 100 | 98 | AB015853:145-1315 | MexX is the membrane fusion protein of the MexXY-OprM multidrug efflux complex. | acridine_dye, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| NODE_37 length_55893 cov_127.347965 | 16016 | 19153 | mexY | 8/9 | 100 | 99 | AB015853:1330-4471 | MexY is the RND-type membrane protein of the efflux complex MexXY-OprM. | acridine_dye, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| NODE_25 length_83899 cov_126.457422 | 31086 | 32366 | MuxA | 0/0 | 100 | 100 | AE004091.2:2855291-2854010 | MuxA is a membrane fusion protein component of the efflux pump system MuxABC-OpmB in Pseudomonas aeruginosa. | aminocoumarin, macrolide, monobactam, tetracycline |
| NODE_25 length_83899 cov_126.457422 | 32363 | 35494 | MuxB | 0/0 | 100 | 100 | AE004091.2:2854014-2850882 | MuxB is one of the two necessary RND components in the Pseudomonas aeruginosa efflux pump system MuxABC-OpmB. | aminocoumarin, macrolide, monobactam, tetracycline |
| NODE_25 length_83899 cov_126.457422 | 35491 | 38601 | MuxC | 0/0 | 100 | 99 | AE004091.2:2850886-2847775 | MuxC is one of the two necessary RND components of the MuxABC-OpmB efflux pumps system in Pseudomonas aeruginosa. | aminocoumarin, macrolide, monobactam, tetracycline |
| NODE_25 length_83899 cov_126.457422 | 38598 | 40094 | OpmB | 0/0 | 100 | 100 | AE004091.2:2847779-2846282 | OpmB is an outer membrane efflux protein in Pseudomonas aeruginosa that shows functional cooperation with MuxABC to form the efflux pump system MuxABC-OpmB. | aminocoumarin, macrolide, monobactam, tetracycline |
| NODE_79 length_19089 cov_147.157059 | 2831 | 4294 | opmD | 0/0 | 100 | 99 | AE004091.2:4710620-4712084 | OpmD is the outer membrane channel protein of the efflux complex MexGHI-OpmD. | acridine_dye, fluoroquinolone, tetracycline |
| NODE_1 length_342707 cov_147.419969 | 284807 | 286282 | opmE | 0/0 | 100 | 99 | AB219524.1:4334-5810 | opmE is an outer membrane factor protein that is part of the multidrug efflux pump MexPQ-OpmE. | acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline |
| NODE_19 length_97790 cov_155.616612 | 93729 | 95177 | OpmH | 0/0 | 100 | 98 | AE004091.2:5584100-5585549 | OpmH is an outer membrane efflux protein required for triclosan-specific efflux pump function. | triclosan |
| NODE_9 length_164743 cov_159.628527 | 65705 | 67150 | OprJ | 1/6 | 100 | 99 | U57969:4622-6062 | OprJ is the outer membrane channel component of the MexCD-OprJ multidrug efflux complex. | aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| NODE_13 length_141417 cov_160.200545 | 87584 | 89041 | OprM | 0/0 | 100 | 100 | AE004091.2:476332-477790 | OprM is an outer membrane factor protein found in Pseudomonas aeruginosa and Burkholderia vietnamiensis. It is part of the MexAB-OprM MexVW-OprM MexXY-OprM and the AmrAB-OprM complex. | acridine_dye, aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| NODE_25 length_83899 cov_126.457422 | 71765 | 73183 | OprN | 0/0 | 100 | 100 | AE004091.2:2813193-2814612 | OprN is the outer membrane channel component of the MexEF-OprN multidrug efflux complex. | diaminopyrimidine, fluoroquinolone, phenicol |
| NODE_3 length_248714 cov_177.247984 | 121439 | 122227 | OXA-50 | 0/0 | 100 | 100 | AY306130:0-789 | OXA-50 is a beta-lactamase found in Pseudomonas aeruginosa. It confers decreased susceptibility to ampicillin and ticarcillin and interestingly to moxalactam and meropenem in P. aeruginosa but not in E. coli. Also confers resistance to piperacillin-tazobactam and cephalotin. | cephalosporin, penam |
| NODE_10 length_155941 cov_147.614202 | 66510 | 67703 | PDC-1 | 0/0 | 100 | 100 | FJ666065:0-1194 | PDC-1 is a beta-lactamase found in Pseudomonas aeruginosa. | carbapenem, cephalosporin, monobactam |
| NODE_58 length_29699 cov_142.674600 | 6034 | 7467 | PmpM | 0/0 | 100 | 100 | AE004091.2:1473980-1472546 | PmpM is a multidrug efflux pump belonging to the MATE family of Pseudomonas aeruginosa. PmpM is an H+ drug antiporter and is the first reported case of an H+ coupled efflux pump in the MATE family. PmpM confers resistance to fluoroquinolones fradiomycin benzalkonium chloride chlorhexidine gluconate ethidium bromide tetraphenylphosphonium chloride (TPPCl) and rhodamine 6G. | aminoglycoside, benzalkonium_chloride, fluoroquinolone |
| NODE_64 length_24414 cov_138.449973 | 18540 | 19178 | Pseudomonas_aeruginosa_catB7 | 0/0 | 100 | 100 | NC_002516.2:780101-779462 | catB7 is a chromosome-encoded variant of the cat gene found in Pseudomonas aeruginosa | phenicol |
| NODE_6 length_203356 cov_143.304148 | 184980 | 185657 | Pseudomonas_aeruginosa_CpxR | 0/0 | 100 | 100 | LT673656.1:1885022-1884344 | CpxR is directly involved in activation of expression of RND efflux pump MexAB-OprM in P. aeruginosa. CpxR is required to enhance mexAB-oprM expression and drug resistance in the absence of repressor MexR. | aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| NODE_24 length_84215 cov_160.153367 | 66313 | 66645 | Pseudomonas_aeruginosa_emrE | 0/0 | 100 | 99 | AE004091.2:5606102-5606435 | EmrE is a small multidrug transporter that functions as a homodimer and that couples the efflux of small polyaromatic cations from the cell with the import of protons down an electrochemical gradient. Confers resistance to tetraphenylphosphonium methyl viologen gentamicin kanamycin and neomycin. | aminoglycoside |
| NODE_49 length_38116 cov_123.211546 | 27554 | 28024 | Pseudomonas_aeruginosa_soxR | 0/0 | 100 | 100 | AE004091.2:2503895-2503424 | SoxR is a redox-sensitive transcriptional activator that induces expression of a small regulon that includes the RND efflux pump-encoding operon mexGHI-opmD. SoxR was shown to be activated by pyocyanin. | acridine_dye, cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan |
| NODE_44 length_44222 cov_158.782308 | 21214 | 22365 | TriA | 0/0 | 100 | 100 | AE004091.2:177306-178458 | TriA is a membrane protein that is fused to TriB and both are required for the triclosan efflux pump function of TriABC-OpmH in P. aeruginosa. | triclosan |
| NODE_44 length_44222 cov_158.782308 | 20147 | 21217 | TriB | 0/0 | 100 | 100 | AE004091.2:178454-179525 | TriB is a membrane protein that is fused to TriA and both are required for the triclosan efflux pump function of TriABC-OpmH in P. aeruginosa. | triclosan |
| NODE_44 length_44222 cov_158.782308 | 17103 | 20150 | TriC | 0/0 | 100 | 100 | AE004091.2:179521-182569 | TriC is a resistance nodulation cell division (RND) transporter that is a part of TriABC-OpmH a triclosan-specific efflux protein. | triclosan |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| NODE_10 length_155941 cov_147.614202 | 53362 | 54168 | (AGly)aph(3’’)-IIb | 0/0 | 100 | 98 | X90856:388-1194 | (AGly)aph(3’’)-IIb | NA |
| NODE_3 length_248714 cov_177.247984 | 121439 | 122227 | (Bla)blaOXA-50 | 0/0 | 100 | 99 | AM117128:1-789 | (Bla)blaOXA-50 | NA |
| NODE_10 length_155941 cov_147.614202 | 66510 | 67703 | (Bla)blaPDC-216 | 0/0 | 100 | 100 | MF281081:MF281081 | (Bla)blaPDC-216 | NA |
| NODE_127 length_7264 cov_162.301377 | 1 | 182 | (Flq)crpP | 0/0 | 92 | 99 | NG_062203:101-298 | (Flq)crpP | NA |
| NODE_10 length_155941 cov_147.614202 | 35449 | 36657 | (Phe)bcr1 | 0/0 | 100 | 100 | NG_055652:101-1309 | (Phe)bcr1 | NA |
| NODE_64 length_24414 cov_138.449973 | 18540 | 19178 | (Phe)catB7 | 0/0 | 100 | 100 | AF036933:177-815 | (Phe)catB7 | NA |
Sample-05
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| NODE_38 length_50525 cov_159.434229 | 22812 | 23618 | aph(3’)-IIb_2 | 0/0 | 100 | 99 | CP006832 | aph(3’)-IIb | |
| NODE_7 length_219283 cov_210.933693 | 112451 | 113239 | blaOXA-50_1 | 0/0 | 100 | 100 | AY306130 | blaOXA-50 | Amoxicillin, Ampicillin |
| NODE_38 length_50525 cov_159.434229 | 9276 | 10469 | blaPAO_2 | 0/0 | 100 | 100 | FJ666065 | blaPAO | |
| NODE_13 length_164476 cov_179.124472 | 110965 | 111603 | catB7_1 | 0/0 | 100 | 98 | AF036933 | catB7 | Chloramphenicol |
| NODE_4 length_251871 cov_187.455098 | 230220 | 230627 | fosA_4 | 0/0 | 100 | 99 | ACWU01000146 | fosA | Fosfomycin |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| NODE_38 length_50525 cov_159.434229 | 22812 | 23618 | APH(3’)-IIb | 0/0 | 100 | 98 | X90856:387-1194 | APH(3’)-IIb is a chromosomal-encoded aminoglycoside phosphotransferase in P. aeruginosa | aminoglycoside |
| NODE_9 length_193897 cov_186.654437 | 144928 | 145089 | ArmR | 0/0 | 100 | 100 | AE004091.2:4165880-4165718 | ArmR a 53-amino-acid antirepressor allosterically inhibits MexR dimer-DNA binding by occupying a hydrophobic binding cavity within the center of the MexR dimer. ArmR up-regulation and MexR-ArmR complex formation have previously been shown to upregulate MexAB-OprM. | aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| NODE_16 length_134478 cov_173.657354 | 92772 | 94760 | arnA | 0/0 | 100 | 99 | AE004091.2:3982020-3984009 | arnA modifies lipid A with 4-amino-4-deoxy-L-arabinose (Ara4N) which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. arnA is found in E. coli and P. aeruginosa. | peptide |
| NODE_51 length_32895 cov_164.010939 | 4424 | 5857 | basS | 0/0 | 100 | 100 | JQ340365:0-1434 | Histidine protein kinase sensor Lipid A modification gene, part of a two-component system involved in polymyxin resistance that senses high extracellular Fe(2+) | peptide |
| NODE_38 length_50525 cov_159.434229 | 40323 | 41531 | bcr-1 | 0/0 | 100 | 99 | CP012901.1:5980365-5979156 | Transmembrane protein which expels bicyclomycin from the cell leading to bicyclomycin resistance. Identified in Pseudomonas aeruginosa strains responsible for outbreaks in Brazil often appearing with blaSPM-1 another bicyclomycin resistance gene | bicyclomycin |
| NODE_4 length_251871 cov_187.455098 | 230220 | 230627 | fosA | 0/0 | 100 | 99 | AE004091.2:1221690-1222098 | An enzyme that confers resistance to fosfomycin in Serratia marcescens by breaking the epoxide ring of the molecule. It depends on the cofactors Manganese (II) and Potassium and uses Glutathione (GSH) as the nucleophilic molecule. In Pseudomonas aeruginosa FosA catalyzes the conjugation of glutathione to carbon-1 of fosfomycin rendering it ineffective as an antibacterial drug. | fosfomycin |
| NODE_12 length_179690 cov_165.867849 | 83291 | 84442 | MexA | 0/0 | 100 | 100 | AE004091.2:472023-473175 | MexA is the membrane fusion protein of the MexAB-OprM multidrug efflux complex. | aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| NODE_12 length_179690 cov_165.867849 | 84458 | 87587 | MexB | 1/11 | 100 | 99 | L11616:1569-4710 | MexB is the inner membrane multidrug exporter of the efflux complex MexAB-OprM. | aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| NODE_17 length_133482 cov_206.365466 | 32079 | 33242 | MexC | 0/0 | 100 | 100 | U57969:294-1458 | MexC is the membrane fusion protein of the MexCD-OprJ multidrug efflux complex. | aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| NODE_17 length_133482 cov_206.365466 | 33270 | 36401 | MexD | 2/2 | 100 | 99 | U57969:1485-4617 | MexD is the multidrug inner membrane transporter of the MexCD-OprJ complex. | aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| NODE_1 length_361471 cov_162.916764 | 2651 | 3895 | MexE | 0/0 | 100 | 100 | AE004091.2:2808742-2809987 | MexE is the membrane fusion protein of the MexEF-OprN multidrug efflux complex. | diaminopyrimidine, fluoroquinolone, phenicol |
| NODE_1 length_361471 cov_162.916764 | 3917 | 7105 | MexF | 0/0 | 100 | 100 | AE004091.2:2810008-2813197 | MexF is the multidrug inner membrane transporter of the MexEF-OprN complex. mexF corresponds to 2 loci in Pseudomonas aeruginosa PAO1 (gene name: mexF/mexB) and 4 loci in Pseudomonas aeruginosa LESB58 (gene name: mexD/mexB). | diaminopyrimidine, fluoroquinolone, phenicol |
| NODE_44 length_42134 cov_148.507930 | 8513 | 8959 | mexG | 0/0 | 100 | 100 | AE004091.2:4705955-4706402 | MexG is a membrane protein required for MexGHI-OpmD efflux activity. | acridine_dye, fluoroquinolone, tetracycline |
| NODE_44 length_42134 cov_148.507930 | 7393 | 8505 | mexH | 0/0 | 100 | 100 | AE004091.2:4706409-4707522 | MexH is the membrane fusion protein of the efflux complex MexGHI-OpmD. | acridine_dye, fluoroquinolone, tetracycline |
| NODE_44 length_42134 cov_148.507930 | 4291 | 7380 | mexI | 0/0 | 100 | 100 | AE004091.2:4707534-4710624 | MexI is the inner membrane transporter of the efflux complex MexGHI-OpmD. | acridine_dye, fluoroquinolone, tetracycline |
| NODE_9 length_193897 cov_186.654437 | 98468 | 99571 | mexJ | 0/0 | 100 | 99 | AE004091.2:4120373-4119269 | mexJ is the membrane fusion protein of the MexJK multidrug efflux protein. | macrolide, tetracycline, triclosan |
| NODE_9 length_193897 cov_186.654437 | 95386 | 98463 | mexK | 0/0 | 100 | 100 | AE004091.2:4119265-4116187 | mexK is the inner membrane resistance-nodulation-cell division (RND) transporter in the MexJK multidrug efflux protein. | macrolide, tetracycline, triclosan |
| NODE_9 length_193897 cov_186.654437 | 99667 | 100305 | mexL | 0/0 | 100 | 99 | AE004091.2:4120468-4121107 | MexL is a specific repressor of mexJK transcription and autoregulates its own expression. | macrolide, tetracycline, triclosan |
| NODE_23 length_99672 cov_183.039861 | 20638 | 21795 | mexM | 0/0 | 100 | 99 | AB219523.1:21-1179 | mexM is the membrane fusion protein of the MexMN-OprM multidrug efflux complex. | phenicol |
| NODE_23 length_99672 cov_183.039861 | 21792 | 24902 | mexN | 0/0 | 100 | 99 | AB219523.1:1175-4286 | MexN is the inner membrane transporter of the MexMN-OprM multidrug efflux complex. | phenicol |
| NODE_16 length_134478 cov_173.657354 | 53395 | 54552 | mexP | 0/0 | 100 | 100 | AB219524.1:22-1180 | MexP is the membrane fusion protein of the MexPQ-OpmE multidrug efflux complex | acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline |
| NODE_16 length_134478 cov_173.657354 | 50237 | 53398 | mexQ | 0/0 | 100 | 99 | AB219524.1:1176-4338 | MexQ is the inner membrane transporter of the multidrug efflux pump MexPQ-OpmE. | acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline |
| NODE_8 length_217256 cov_185.098463 | 109300 | 110430 | mexV | 0/0 | 100 | 99 | AE004091.2:4903465-4904596 | MexV is the membrane fusion protein of the MexVW-OprM multidrug efflux complex. | acridine_dye, fluoroquinolone, macrolide, phenicol, tetracycline |
| NODE_8 length_217256 cov_185.098463 | 110481 | 113537 | mexW | 0/0 | 100 | 100 | NC_002516.2:4904646-4907703 | MexW is the RND-type membrane protein of the efflux complex MexVW-OprM. | acridine_dye, fluoroquinolone, macrolide, phenicol, tetracycline |
| NODE_30 length_77875 cov_180.164529 | 36805 | 37984 | mexX | 7/10 | 100 | 98 | AB015853:145-1315 | MexX is the membrane fusion protein of the MexXY-OprM multidrug efflux complex. | acridine_dye, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| NODE_30 length_77875 cov_180.164529 | 38000 | 41137 | mexY | 8/9 | 100 | 99 | AB015853:1330-4471 | MexY is the RND-type membrane protein of the efflux complex MexXY-OprM. | acridine_dye, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| NODE_1 length_361471 cov_162.916764 | 47917 | 49197 | MuxA | 0/0 | 100 | 100 | AE004091.2:2855291-2854010 | MuxA is a membrane fusion protein component of the efflux pump system MuxABC-OpmB in Pseudomonas aeruginosa. | aminocoumarin, macrolide, monobactam, tetracycline |
| NODE_1 length_361471 cov_162.916764 | 44789 | 47920 | MuxB | 0/0 | 100 | 100 | AE004091.2:2854014-2850882 | MuxB is one of the two necessary RND components in the Pseudomonas aeruginosa efflux pump system MuxABC-OpmB. | aminocoumarin, macrolide, monobactam, tetracycline |
| NODE_1 length_361471 cov_162.916764 | 41682 | 44792 | MuxC | 0/0 | 100 | 100 | AE004091.2:2850886-2847775 | MuxC is one of the two necessary RND components of the MuxABC-OpmB efflux pumps system in Pseudomonas aeruginosa. | aminocoumarin, macrolide, monobactam, tetracycline |
| NODE_1 length_361471 cov_162.916764 | 40189 | 41685 | OpmB | 0/0 | 100 | 100 | AE004091.2:2847779-2846282 | OpmB is an outer membrane efflux protein in Pseudomonas aeruginosa that shows functional cooperation with MuxABC to form the efflux pump system MuxABC-OpmB. | aminocoumarin, macrolide, monobactam, tetracycline |
| NODE_44 length_42134 cov_148.507930 | 2831 | 4294 | opmD | 0/0 | 100 | 100 | AE004091.2:4710620-4712084 | OpmD is the outer membrane channel protein of the efflux complex MexGHI-OpmD. | acridine_dye, fluoroquinolone, tetracycline |
| NODE_16 length_134478 cov_173.657354 | 48765 | 50240 | opmE | 0/0 | 100 | 99 | AB219524.1:4334-5810 | opmE is an outer membrane factor protein that is part of the multidrug efflux pump MexPQ-OpmE. | acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline |
| NODE_50 length_33691 cov_183.599631 | 2974 | 4422 | OpmH | 0/0 | 100 | 97 | AE004091.2:5584100-5585549 | OpmH is an outer membrane efflux protein required for triclosan-specific efflux pump function. | triclosan |
| NODE_17 length_133482 cov_206.365466 | 36407 | 37846 | OprJ | 0/0 | 100 | 99 | U57969:4622-6062 | OprJ is the outer membrane channel component of the MexCD-OprJ multidrug efflux complex. | aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| NODE_12 length_179690 cov_165.867849 | 87589 | 89046 | OprM | 0/0 | 100 | 100 | AE004091.2:476332-477790 | OprM is an outer membrane factor protein found in Pseudomonas aeruginosa and Burkholderia vietnamiensis. It is part of the MexAB-OprM MexVW-OprM MexXY-OprM and the AmrAB-OprM complex. | acridine_dye, aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| NODE_1 length_361471 cov_162.916764 | 7102 | 8520 | OprN | 0/0 | 100 | 100 | AE004091.2:2813193-2814612 | OprN is the outer membrane channel component of the MexEF-OprN multidrug efflux complex. | diaminopyrimidine, fluoroquinolone, phenicol |
| NODE_7 length_219283 cov_210.933693 | 112451 | 113239 | OXA-50 | 0/0 | 100 | 100 | AY306130:0-789 | OXA-50 is a beta-lactamase found in Pseudomonas aeruginosa. It confers decreased susceptibility to ampicillin and ticarcillin and interestingly to moxalactam and meropenem in P. aeruginosa but not in E. coli. Also confers resistance to piperacillin-tazobactam and cephalotin. | cephalosporin, penam |
| NODE_38 length_50525 cov_159.434229 | 9276 | 10469 | PDC-3 | 0/0 | 100 | 100 | FJ666066:0-1194 | PDC-3 is a extended-spectrum beta-lactamase found in Pseudomonas aeruginosa. | carbapenem, cephalosporin, monobactam |
| NODE_2 length_333250 cov_193.426976 | 78063 | 79496 | PmpM | 0/0 | 100 | 100 | AE004091.2:1473980-1472546 | PmpM is a multidrug efflux pump belonging to the MATE family of Pseudomonas aeruginosa. PmpM is an H+ drug antiporter and is the first reported case of an H+ coupled efflux pump in the MATE family. PmpM confers resistance to fluoroquinolones fradiomycin benzalkonium chloride chlorhexidine gluconate ethidium bromide tetraphenylphosphonium chloride (TPPCl) and rhodamine 6G. | aminoglycoside, benzalkonium_chloride, fluoroquinolone |
| NODE_13 length_164476 cov_179.124472 | 110965 | 111603 | Pseudomonas_aeruginosa_catB7 | 0/0 | 100 | 98 | NC_002516.2:780101-779462 | catB7 is a chromosome-encoded variant of the cat gene found in Pseudomonas aeruginosa | phenicol |
| NODE_5 length_242553 cov_173.306105 | 224376 | 225053 | Pseudomonas_aeruginosa_CpxR | 0/0 | 100 | 100 | LT673656.1:1885022-1884344 | CpxR is directly involved in activation of expression of RND efflux pump MexAB-OprM in P. aeruginosa. CpxR is required to enhance mexAB-oprM expression and drug resistance in the absence of repressor MexR. | aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| NODE_27 length_86577 cov_190.531353 | 68669 | 69001 | Pseudomonas_aeruginosa_emrE | 0/0 | 100 | 99 | AE004091.2:5606102-5606435 | EmrE is a small multidrug transporter that functions as a homodimer and that couples the efflux of small polyaromatic cations from the cell with the import of protons down an electrochemical gradient. Confers resistance to tetraphenylphosphonium methyl viologen gentamicin kanamycin and neomycin. | aminoglycoside |
| NODE_33 length_73258 cov_178.545387 | 54731 | 55201 | Pseudomonas_aeruginosa_soxR | 0/0 | 100 | 100 | AE004091.2:2503895-2503424 | SoxR is a redox-sensitive transcriptional activator that induces expression of a small regulon that includes the RND efflux pump-encoding operon mexGHI-opmD. SoxR was shown to be activated by pyocyanin. | acridine_dye, cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan |
| NODE_19 length_128745 cov_193.824789 | 49416 | 50567 | TriA | 0/0 | 100 | 100 | AE004091.2:177306-178458 | TriA is a membrane protein that is fused to TriB and both are required for the triclosan efflux pump function of TriABC-OpmH in P. aeruginosa. | triclosan |
| NODE_19 length_128745 cov_193.824789 | 48349 | 49419 | TriB | 0/0 | 100 | 100 | AE004091.2:178454-179525 | TriB is a membrane protein that is fused to TriA and both are required for the triclosan efflux pump function of TriABC-OpmH in P. aeruginosa. | triclosan |
| NODE_19 length_128745 cov_193.824789 | 45305 | 48352 | TriC | 0/0 | 100 | 100 | AE004091.2:179521-182569 | TriC is a resistance nodulation cell division (RND) transporter that is a part of TriABC-OpmH a triclosan-specific efflux protein. | triclosan |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| NODE_38 length_50525 cov_159.434229 | 22812 | 23618 | (AGly)aph(3’’)-IIb | 0/0 | 100 | 98 | X90856:388-1194 | (AGly)aph(3’’)-IIb | NA |
| NODE_7 length_219283 cov_210.933693 | 112451 | 113239 | (Bla)blaOXA-50 | 0/0 | 100 | 99 | AM117128:1-789 | (Bla)blaOXA-50 | NA |
| NODE_38 length_50525 cov_159.434229 | 9276 | 10469 | (Bla)blaPDC-195 | 0/0 | 100 | 100 | MF098287:1-1194 | (Bla)blaPDC-195 | NA |
| NODE_38 length_50525 cov_159.434229 | 40323 | 41531 | (Phe)bcr1 | 0/0 | 100 | 99 | NG_055652:101-1309 | (Phe)bcr1 | NA |
| NODE_13 length_164476 cov_179.124472 | 110965 | 111603 | (Phe)catB7 | 0/0 | 100 | 98 | AF036933:177-815 | (Phe)catB7 | NA |
Sample-06
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| NODE_2 length_466600 cov_14.548099 | 26241 | 27086 | aadK_1 | 1/9 | 99 | 97 | M26879 | aadK | Streptomycin |
| NODE_20 length_155942 cov_136.207115 | 53363 | 54169 | aph(3’)-IIb_2 | 0/0 | 100 | 99 | CP006832 | aph(3’)-IIb | |
| NODE_14 length_234828 cov_161.179062 | 120920 | 121708 | blaOXA-50_1 | 0/0 | 100 | 100 | AY306130 | blaOXA-50 | Amoxicillin, Ampicillin |
| NODE_20 length_155942 cov_136.207115 | 66511 | 67704 | blaPAO_1 | 0/0 | 100 | 100 | AY083595 | blaPAO | |
| NODE_44 length_64643 cov_141.538767 | 53378 | 54016 | catB7_1 | 0/0 | 100 | 100 | AF036933 | catB7 | Chloramphenicol |
| NODE_74 length_29737 cov_161.765408 | 25719 | 25916 | crpP_1 | 0/0 | 100 | 99 | HM560971 | crpP | Ciprofloxacin |
| NODE_7 length_337452 cov_135.413362 | 112201 | 112608 | fosA_4 | 0/0 | 100 | 99 | ACWU01000146 | fosA | Fosfomycin |
| NODE_5 length_389388 cov_16.525932 | 354537 | 355457 | mph(K)_1 | 0/0 | 100 | 99 | NC_000964 | mph(K) | Spiramycin, Telithromycin |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| NODE_2 length_466600 cov_14.548099 | 26241 | 27086 | aadK | 1/9 | 99 | 97 | AL009126:2736536-2735681 | aadK is a chromosomal-encoded aminoglycoside nucleotidyltransferase gene in B. subtilis and Bacillus spp. | aminoglycoside |
| NODE_20 length_155942 cov_136.207115 | 53363 | 54169 | APH(3’)-IIb | 0/0 | 100 | 98 | X90856:387-1194 | APH(3’)-IIb is a chromosomal-encoded aminoglycoside phosphotransferase in P. aeruginosa | aminoglycoside |
| NODE_10 length_301602 cov_136.380383 | 125397 | 125558 | ArmR | 0/0 | 100 | 100 | AE004091.2:4165880-4165718 | ArmR a 53-amino-acid antirepressor allosterically inhibits MexR dimer-DNA binding by occupying a hydrophobic binding cavity within the center of the MexR dimer. ArmR up-regulation and MexR-ArmR complex formation have previously been shown to upregulate MexAB-OprM. | aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| NODE_24 length_122074 cov_129.057026 | 8474 | 10462 | arnA | 0/0 | 100 | 100 | AE004091.2:3982020-3984009 | arnA modifies lipid A with 4-amino-4-deoxy-L-arabinose (Ara4N) which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. arnA is found in E. coli and P. aeruginosa. | peptide |
| NODE_12 length_284135 cov_15.820347 | 27405 | 29975 | Bacillus_subtilis_mprF | 0/0 | 100 | 98 | AL009126:916777-919348 | MprF is a integral membrane protein that modifies the negatively-charged phosphatidylglycerol on the membrane surface. This confers resistance to cationic peptides that disrupt the cell membrane including defensins. Additionally large-scale mutations causing loss of function of the gene result in increased susceptibility to daptomycin. | peptide |
| NODE_75 length_29122 cov_137.105560 | 23371 | 24804 | basS | 0/0 | 100 | 100 | JQ340365:0-1434 | Histidine protein kinase sensor Lipid A modification gene, part of a two-component system involved in polymyxin resistance that senses high extracellular Fe(2+) | peptide |
| NODE_20 length_155942 cov_136.207115 | 35450 | 36658 | bcr-1 | 0/0 | 100 | 100 | CP012901.1:5980365-5979156 | Transmembrane protein which expels bicyclomycin from the cell leading to bicyclomycin resistance. Identified in Pseudomonas aeruginosa strains responsible for outbreaks in Brazil often appearing with blaSPM-1 another bicyclomycin resistance gene | bicyclomycin |
| NODE_2 length_466600 cov_14.548099 | 9080 | 10282 | blt | 0/0 | 100 | 99 | L32599:1236-2439 | blt is an MFS efflux pump that confers resistance to multiple drugs such as rhodamine and acridine dyes and fluoroquinolone antibiotics | acridine_dye, fluoroquinolone |
| NODE_13 length_251680 cov_13.328645 | 174010 | 175179 | bmr | 0/0 | 100 | 99 | M33768:194-1364 | bmr is an MFS antibiotic efflux pump that confers resistance to multiple drugs including acridine dyes fluoroquinolone antibiotics chloramphenicol and puromycin | acridine_dye, fluoroquinolone, nucleoside, phenicol |
| NODE_74 length_29737 cov_161.765408 | 25719 | 25916 | CrpP | 0/0 | 100 | 99 | HM560971.1:119269-119071 | A plasmid-encoded ciprofloxacin resistance protein identified from a Pseudomonas aeruginosa plasmid. CrpP confers resistance to ciprofloxacin by antibiotic inactivation through phosphorylation. Described by Chavez-Jacobo et al. 2018. | fluoroquinolone |
| NODE_7 length_337452 cov_135.413362 | 112201 | 112608 | fosA | 0/0 | 100 | 99 | AE004091.2:1221690-1222098 | An enzyme that confers resistance to fosfomycin in Serratia marcescens by breaking the epoxide ring of the molecule. It depends on the cofactors Manganese (II) and Potassium and uses Glutathione (GSH) as the nucleophilic molecule. In Pseudomonas aeruginosa FosA catalyzes the conjugation of glutathione to carbon-1 of fosfomycin rendering it ineffective as an antibacterial drug. | fosfomycin |
| NODE_5 length_389388 cov_16.525932 | 341209 | 342642 | lmrB | 0/0 | 100 | 98 | JYFL01000006.1:113503-112069 | lmrB is a chromosomally-encoded efflux pump that confers resistance to lincosamides in Bacillus subtilis | lincosamide |
| NODE_8 length_315670 cov_146.041731 | 231342 | 232493 | MexA | 0/0 | 100 | 100 | AE004091.2:472023-473175 | MexA is the membrane fusion protein of the MexAB-OprM multidrug efflux complex. | aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| NODE_8 length_315670 cov_146.041731 | 228222 | 231326 | MexB | 1/36 | 99 | 99 | L11616:1569-4710 | MexB is the inner membrane multidrug exporter of the efflux complex MexAB-OprM. | aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| NODE_27 length_116437 cov_147.341054 | 81119 | 82282 | MexC | 0/0 | 100 | 100 | U57969:294-1458 | MexC is the membrane fusion protein of the MexCD-OprJ multidrug efflux complex. | aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| NODE_27 length_116437 cov_147.341054 | 77960 | 81091 | MexD | 2/2 | 100 | 99 | U57969:1485-4617 | MexD is the multidrug inner membrane transporter of the MexCD-OprJ complex. | aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| NODE_11 length_285563 cov_132.606706 | 255596 | 256840 | MexE | 0/0 | 100 | 100 | AE004091.2:2808742-2809987 | MexE is the membrane fusion protein of the MexEF-OprN multidrug efflux complex. | diaminopyrimidine, fluoroquinolone, phenicol |
| NODE_11 length_285563 cov_132.606706 | 252386 | 255574 | MexF | 0/0 | 100 | 100 | AE004091.2:2810008-2813197 | MexF is the multidrug inner membrane transporter of the MexEF-OprN complex. mexF corresponds to 2 loci in Pseudomonas aeruginosa PAO1 (gene name: mexF/mexB) and 4 loci in Pseudomonas aeruginosa LESB58 (gene name: mexD/mexB). | diaminopyrimidine, fluoroquinolone, phenicol |
| NODE_56 length_53088 cov_134.026938 | 44130 | 44576 | mexG | 0/0 | 100 | 100 | AE004091.2:4705955-4706402 | MexG is a membrane protein required for MexGHI-OpmD efflux activity. | acridine_dye, fluoroquinolone, tetracycline |
| NODE_56 length_53088 cov_134.026938 | 44584 | 45696 | mexH | 0/0 | 100 | 100 | AE004091.2:4706409-4707522 | MexH is the membrane fusion protein of the efflux complex MexGHI-OpmD. | acridine_dye, fluoroquinolone, tetracycline |
| NODE_56 length_53088 cov_134.026938 | 45709 | 48798 | mexI | 0/0 | 100 | 100 | AE004091.2:4707534-4710624 | MexI is the inner membrane transporter of the efflux complex MexGHI-OpmD. | acridine_dye, fluoroquinolone, tetracycline |
| NODE_10 length_301602 cov_136.380383 | 170901 | 172004 | mexJ | 0/0 | 100 | 99 | AE004091.2:4120373-4119269 | mexJ is the membrane fusion protein of the MexJK multidrug efflux protein. | macrolide, tetracycline, triclosan |
| NODE_10 length_301602 cov_136.380383 | 172009 | 175086 | mexK | 0/0 | 100 | 100 | AE004091.2:4119265-4116187 | mexK is the inner membrane resistance-nodulation-cell division (RND) transporter in the MexJK multidrug efflux protein. | macrolide, tetracycline, triclosan |
| NODE_10 length_301602 cov_136.380383 | 170167 | 170805 | mexL | 0/0 | 100 | 100 | AE004091.2:4120468-4121107 | MexL is a specific repressor of mexJK transcription and autoregulates its own expression. | macrolide, tetracycline, triclosan |
| NODE_18 length_181408 cov_134.053405 | 100659 | 101816 | mexM | 0/0 | 100 | 99 | AB219523.1:21-1179 | mexM is the membrane fusion protein of the MexMN-OprM multidrug efflux complex. | phenicol |
| NODE_18 length_181408 cov_134.053405 | 101813 | 104923 | mexN | 0/0 | 100 | 99 | AB219523.1:1175-4286 | MexN is the inner membrane transporter of the MexMN-OprM multidrug efflux complex. | phenicol |
| NODE_24 length_122074 cov_129.057026 | 48671 | 49828 | mexP | 0/0 | 100 | 100 | AB219524.1:22-1180 | MexP is the membrane fusion protein of the MexPQ-OpmE multidrug efflux complex | acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline |
| NODE_24 length_122074 cov_129.057026 | 49825 | 52986 | mexQ | 0/0 | 100 | 100 | AB219524.1:1176-4338 | MexQ is the inner membrane transporter of the multidrug efflux pump MexPQ-OpmE. | acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline |
| NODE_16 length_217449 cov_135.590370 | 106799 | 107929 | mexV | 0/0 | 100 | 100 | AE004091.2:4903465-4904596 | MexV is the membrane fusion protein of the MexVW-OprM multidrug efflux complex. | acridine_dye, fluoroquinolone, macrolide, phenicol, tetracycline |
| NODE_16 length_217449 cov_135.590370 | 103692 | 106748 | mexW | 0/0 | 100 | 100 | NC_002516.2:4904646-4907703 | MexW is the RND-type membrane protein of the efflux complex MexVW-OprM. | acridine_dye, fluoroquinolone, macrolide, phenicol, tetracycline |
| NODE_53 length_56400 cov_124.318502 | 39894 | 41073 | mexX | 7/10 | 100 | 98 | AB015853:145-1315 | MexX is the membrane fusion protein of the MexXY-OprM multidrug efflux complex. | acridine_dye, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| NODE_53 length_56400 cov_124.318502 | 36741 | 39878 | mexY | 8/9 | 100 | 99 | AB015853:1330-4471 | MexY is the RND-type membrane protein of the efflux complex MexXY-OprM. | acridine_dye, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| NODE_5 length_389388 cov_16.525932 | 354537 | 355457 | mphK | 0/0 | 100 | 99 | CP010314.1:275837-276758 | A chromosomal macrolide phosphotransferase identified from Bacillus subtilis | macrolide |
| NODE_11 length_285563 cov_132.606706 | 210292 | 211572 | MuxA | 0/0 | 100 | 100 | AE004091.2:2855291-2854010 | MuxA is a membrane fusion protein component of the efflux pump system MuxABC-OpmB in Pseudomonas aeruginosa. | aminocoumarin, macrolide, monobactam, tetracycline |
| NODE_11 length_285563 cov_132.606706 | 211569 | 214700 | MuxB | 0/0 | 100 | 100 | AE004091.2:2854014-2850882 | MuxB is one of the two necessary RND components in the Pseudomonas aeruginosa efflux pump system MuxABC-OpmB. | aminocoumarin, macrolide, monobactam, tetracycline |
| NODE_11 length_285563 cov_132.606706 | 214697 | 217807 | MuxC | 0/0 | 100 | 99 | AE004091.2:2850886-2847775 | MuxC is one of the two necessary RND components of the MuxABC-OpmB efflux pumps system in Pseudomonas aeruginosa. | aminocoumarin, macrolide, monobactam, tetracycline |
| NODE_11 length_285563 cov_132.606706 | 217804 | 219300 | OpmB | 0/0 | 100 | 100 | AE004091.2:2847779-2846282 | OpmB is an outer membrane efflux protein in Pseudomonas aeruginosa that shows functional cooperation with MuxABC to form the efflux pump system MuxABC-OpmB. | aminocoumarin, macrolide, monobactam, tetracycline |
| NODE_56 length_53088 cov_134.026938 | 48795 | 50258 | opmD | 0/0 | 100 | 99 | AE004091.2:4710620-4712084 | OpmD is the outer membrane channel protein of the efflux complex MexGHI-OpmD. | acridine_dye, fluoroquinolone, tetracycline |
| NODE_24 length_122074 cov_129.057026 | 52983 | 54458 | opmE | 0/0 | 100 | 99 | AB219524.1:4334-5810 | opmE is an outer membrane factor protein that is part of the multidrug efflux pump MexPQ-OpmE. | acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline |
| NODE_68 length_33713 cov_138.736711 | 2982 | 4430 | OpmH | 0/0 | 100 | 98 | AE004091.2:5584100-5585549 | OpmH is an outer membrane efflux protein required for triclosan-specific efflux pump function. | triclosan |
| NODE_27 length_116437 cov_147.341054 | 76509 | 77954 | OprJ | 1/6 | 100 | 99 | U57969:4622-6062 | OprJ is the outer membrane channel component of the MexCD-OprJ multidrug efflux complex. | aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| NODE_8 length_315670 cov_146.041731 | 226763 | 228220 | OprM | 0/0 | 100 | 100 | AE004091.2:476332-477790 | OprM is an outer membrane factor protein found in Pseudomonas aeruginosa and Burkholderia vietnamiensis. It is part of the MexAB-OprM MexVW-OprM MexXY-OprM and the AmrAB-OprM complex. | acridine_dye, aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| NODE_11 length_285563 cov_132.606706 | 250971 | 252389 | OprN | 0/0 | 100 | 100 | AE004091.2:2813193-2814612 | OprN is the outer membrane channel component of the MexEF-OprN multidrug efflux complex. | diaminopyrimidine, fluoroquinolone, phenicol |
| NODE_14 length_234828 cov_161.179062 | 120920 | 121708 | OXA-50 | 0/0 | 100 | 100 | AY306130:0-789 | OXA-50 is a beta-lactamase found in Pseudomonas aeruginosa. It confers decreased susceptibility to ampicillin and ticarcillin and interestingly to moxalactam and meropenem in P. aeruginosa but not in E. coli. Also confers resistance to piperacillin-tazobactam and cephalotin. | cephalosporin, penam |
| NODE_20 length_155942 cov_136.207115 | 66511 | 67704 | PDC-1 | 0/0 | 100 | 100 | FJ666065:0-1194 | PDC-1 is a beta-lactamase found in Pseudomonas aeruginosa. | carbapenem, cephalosporin, monobactam |
| NODE_22 length_144818 cov_131.939727 | 66482 | 67915 | PmpM | 0/0 | 100 | 100 | AE004091.2:1473980-1472546 | PmpM is a multidrug efflux pump belonging to the MATE family of Pseudomonas aeruginosa. PmpM is an H+ drug antiporter and is the first reported case of an H+ coupled efflux pump in the MATE family. PmpM confers resistance to fluoroquinolones fradiomycin benzalkonium chloride chlorhexidine gluconate ethidium bromide tetraphenylphosphonium chloride (TPPCl) and rhodamine 6G. | aminoglycoside, benzalkonium_chloride, fluoroquinolone |
| NODE_44 length_64643 cov_141.538767 | 53378 | 54016 | Pseudomonas_aeruginosa_catB7 | 0/0 | 100 | 100 | NC_002516.2:780101-779462 | catB7 is a chromosome-encoded variant of the cat gene found in Pseudomonas aeruginosa | phenicol |
| NODE_17 length_203356 cov_132.686879 | 17700 | 18377 | Pseudomonas_aeruginosa_CpxR | 0/0 | 100 | 100 | LT673656.1:1885022-1884344 | CpxR is directly involved in activation of expression of RND efflux pump MexAB-OprM in P. aeruginosa. CpxR is required to enhance mexAB-oprM expression and drug resistance in the absence of repressor MexR. | aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| NODE_38 length_84242 cov_141.686580 | 66336 | 66668 | Pseudomonas_aeruginosa_emrE | 0/0 | 100 | 99 | AE004091.2:5606102-5606435 | EmrE is a small multidrug transporter that functions as a homodimer and that couples the efflux of small polyaromatic cations from the cell with the import of protons down an electrochemical gradient. Confers resistance to tetraphenylphosphonium methyl viologen gentamicin kanamycin and neomycin. | aminoglycoside |
| NODE_41 length_66329 cov_127.710303 | 55760 | 56230 | Pseudomonas_aeruginosa_soxR | 0/0 | 100 | 100 | AE004091.2:2503895-2503424 | SoxR is a redox-sensitive transcriptional activator that induces expression of a small regulon that includes the RND efflux pump-encoding operon mexGHI-opmD. SoxR was shown to be activated by pyocyanin. | acridine_dye, cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan |
| NODE_5 length_389388 cov_16.525932 | 291489 | 292082 | tmrB | 0/0 | 100 | 98 | AL009126.3:339749-339155 | tmrB is an ATP-binding tunicamycin resistance protein found in Bacillus subtilis | nucleoside |
| NODE_23 length_128975 cov_152.386158 | 78389 | 79540 | TriA | 0/0 | 100 | 100 | AE004091.2:177306-178458 | TriA is a membrane protein that is fused to TriB and both are required for the triclosan efflux pump function of TriABC-OpmH in P. aeruginosa. | triclosan |
| NODE_23 length_128975 cov_152.386158 | 79537 | 80607 | TriB | 0/0 | 100 | 100 | AE004091.2:178454-179525 | TriB is a membrane protein that is fused to TriA and both are required for the triclosan efflux pump function of TriABC-OpmH in P. aeruginosa. | triclosan |
| NODE_23 length_128975 cov_152.386158 | 80604 | 83651 | TriC | 0/0 | 100 | 100 | AE004091.2:179521-182569 | TriC is a resistance nodulation cell division (RND) transporter that is a part of TriABC-OpmH a triclosan-specific efflux protein. | triclosan |
| NODE_5 length_389388 cov_16.525932 | 28917 | 30560 | vmlR | 0/0 | 100 | 98 | NC_000964.3:606379-604735 | vmlR is an ABC-F ATPase ribosomal protection protein identified in Bacillus subtilus. Shown to confer resistance to lincomycin and streptogramin A virginiamycin. Described by Crowe-McAuliffe et al. 2018. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| NODE_3 length_410891 cov_14.767342 | 25620 | 25958 | ykkC | 0/0 | 100 | 100 | AL009126:1376516-1376855 | ykkC is an SMR-type protein that is a subunit of the ykkCD efflux pump | aminoglycoside, phenicol, tetracycline |
| NODE_3 length_410891 cov_14.767342 | 25303 | 25620 | ykkD | 0/0 | 100 | 99 | AL009126:1376854-1377172 | ykkD is an SMR-type protein that is a subunit of the ykkCD efflux pump | aminoglycoside, phenicol, tetracycline |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| NODE_20 length_155942 cov_136.207115 | 53363 | 54169 | (AGly)aph(3’’)-IIb | 0/0 | 100 | 98 | X90856:388-1194 | (AGly)aph(3’’)-IIb | NA |
| NODE_1 length_716614 cov_16.294444 | 673660 | 674181 | (AGly)satA | 0/0 | 100 | 96 | NG_064662:101_622 | (AGly)satA | NA |
| NODE_14 length_234828 cov_161.179062 | 120920 | 121708 | (Bla)blaOXA-50 | 0/0 | 100 | 99 | AM117128:1-789 | (Bla)blaOXA-50 | NA |
| NODE_20 length_155942 cov_136.207115 | 66511 | 67704 | (Bla)blaPDC-216 | 0/0 | 100 | 100 | MF281081:MF281081 | (Bla)blaPDC-216 | NA |
| NODE_74 length_29737 cov_161.765408 | 25719 | 25916 | (Flq)crpP | 0/0 | 100 | 99 | NG_062203:101-298 | (Flq)crpP | NA |
| NODE_5 length_389388 cov_16.525932 | 341203 | 342642 | (MLS)Lmr(B) | 0/0 | 100 | 98 | NG_047912101-1540:1440 | (MLS)Lmr(B) | NA |
| NODE_20 length_155942 cov_136.207115 | 35450 | 36658 | (Phe)bcr1 | 0/0 | 100 | 100 | NG_055652:101-1309 | (Phe)bcr1 | NA |
| NODE_44 length_64643 cov_141.538767 | 53378 | 54016 | (Phe)catB7 | 0/0 | 100 | 100 | AF036933:177-815 | (Phe)catB7 | NA |
Sample-07
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| NODE_14 length_140896 cov_162.336446 | 74273 | 75076 | aph(3’)-IIb_2 | 1/3 | 100 | 99 | CP006832 | aph(3’)-IIb | |
| NODE_17 length_127532 cov_165.759578 | 19367 | 20155 | blaOXA-396_1 | 0/0 | 100 | 100 | AY306134 | blaOXA-396 | Amoxicillin, Ampicillin, Meropenem |
| NODE_14 length_140896 cov_162.336446 | 60724 | 61917 | blaPAO_1 | 0/0 | 100 | 100 | AY083595 | blaPAO | |
| NODE_12 length_153754 cov_137.417278 | 99934 | 100572 | catB7_1 | 0/0 | 100 | 100 | AF036933 | catB7 | Chloramphenicol |
| NODE_3 length_345658 cov_168.996912 | 95882 | 96079 | crpP_1 | 0/0 | 100 | 95 | HM560971 | crpP | Ciprofloxacin |
| NODE_5 length_289325 cov_157.450247 | 248019 | 248426 | fosA_4 | 0/0 | 100 | 99 | ACWU01000146 | fosA | Fosfomycin |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| NODE_14 length_140896 cov_162.336446 | 74273 | 75076 | APH(3’)-IIb | 1/3 | 100 | 98 | X90856:387-1194 | APH(3’)-IIb is a chromosomal-encoded aminoglycoside phosphotransferase in P. aeruginosa | aminoglycoside |
| NODE_11 length_201695 cov_147.288804 | 45207 | 45368 | ArmR | 0/0 | 100 | 100 | AE004091.2:4165880-4165718 | ArmR a 53-amino-acid antirepressor allosterically inhibits MexR dimer-DNA binding by occupying a hydrophobic binding cavity within the center of the MexR dimer. ArmR up-regulation and MexR-ArmR complex formation have previously been shown to upregulate MexAB-OprM. | aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| NODE_13 length_148835 cov_135.704197 | 8489 | 10477 | arnA | 0/0 | 100 | 100 | AE004091.2:3982020-3984009 | arnA modifies lipid A with 4-amino-4-deoxy-L-arabinose (Ara4N) which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. arnA is found in E. coli and P. aeruginosa. | peptide |
| NODE_53 length_33009 cov_134.675088 | 27054 | 28487 | basS | 0/0 | 100 | 100 | JQ340365:0-1434 | Histidine protein kinase sensor Lipid A modification gene, part of a two-component system involved in polymyxin resistance that senses high extracellular Fe(2+) | peptide |
| NODE_14 length_140896 cov_162.336446 | 91781 | 92989 | bcr-1 | 0/0 | 100 | 100 | CP012901.1:5980365-5979156 | Transmembrane protein which expels bicyclomycin from the cell leading to bicyclomycin resistance. Identified in Pseudomonas aeruginosa strains responsible for outbreaks in Brazil often appearing with blaSPM-1 another bicyclomycin resistance gene | bicyclomycin |
| NODE_3 length_345658 cov_168.996912 | 95882 | 96079 | CrpP | 0/0 | 100 | 95 | HM560971.1:119269-119071 | A plasmid-encoded ciprofloxacin resistance protein identified from a Pseudomonas aeruginosa plasmid. CrpP confers resistance to ciprofloxacin by antibiotic inactivation through phosphorylation. Described by Chavez-Jacobo et al. 2018. | fluoroquinolone |
| NODE_5 length_289325 cov_157.450247 | 248019 | 248426 | fosA | 0/0 | 100 | 99 | AE004091.2:1221690-1222098 | An enzyme that confers resistance to fosfomycin in Serratia marcescens by breaking the epoxide ring of the molecule. It depends on the cofactors Manganese (II) and Potassium and uses Glutathione (GSH) as the nucleophilic molecule. In Pseudomonas aeruginosa FosA catalyzes the conjugation of glutathione to carbon-1 of fosfomycin rendering it ineffective as an antibacterial drug. | fosfomycin |
| NODE_1 length_397627 cov_152.412054 | 164169 | 165320 | MexA | 0/0 | 100 | 100 | AE004091.2:472023-473175 | MexA is the membrane fusion protein of the MexAB-OprM multidrug efflux complex. | aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| NODE_1 length_397627 cov_152.412054 | 165336 | 168476 | MexB | 0/0 | 100 | 100 | L11616:1569-4710 | MexB is the inner membrane multidrug exporter of the efflux complex MexAB-OprM. | aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| NODE_3 length_345658 cov_168.996912 | 238041 | 239204 | MexC | 0/0 | 100 | 100 | U57969:294-1458 | MexC is the membrane fusion protein of the MexCD-OprJ multidrug efflux complex. | aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| NODE_3 length_345658 cov_168.996912 | 234882 | 238013 | MexD | 2/2 | 100 | 100 | U57969:1485-4617 | MexD is the multidrug inner membrane transporter of the MexCD-OprJ complex. | aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| NODE_37 length_60981 cov_137.803412 | 2856 | 4100 | MexE | 0/0 | 100 | 100 | AE004091.2:2808742-2809987 | MexE is the membrane fusion protein of the MexEF-OprN multidrug efflux complex. | diaminopyrimidine, fluoroquinolone, phenicol |
| NODE_37 length_60981 cov_137.803412 | 4122 | 7310 | MexF | 0/0 | 100 | 100 | AE004091.2:2810008-2813197 | MexF is the multidrug inner membrane transporter of the MexEF-OprN complex. mexF corresponds to 2 loci in Pseudomonas aeruginosa PAO1 (gene name: mexF/mexB) and 4 loci in Pseudomonas aeruginosa LESB58 (gene name: mexD/mexB). | diaminopyrimidine, fluoroquinolone, phenicol |
| NODE_65 length_19066 cov_140.811364 | 10108 | 10554 | mexG | 0/0 | 100 | 100 | AE004091.2:4705955-4706402 | MexG is a membrane protein required for MexGHI-OpmD efflux activity. | acridine_dye, fluoroquinolone, tetracycline |
| NODE_65 length_19066 cov_140.811364 | 10562 | 11674 | mexH | 0/0 | 100 | 100 | AE004091.2:4706409-4707522 | MexH is the membrane fusion protein of the efflux complex MexGHI-OpmD. | acridine_dye, fluoroquinolone, tetracycline |
| NODE_65 length_19066 cov_140.811364 | 11687 | 14776 | mexI | 0/0 | 100 | 100 | AE004091.2:4707534-4710624 | MexI is the inner membrane transporter of the efflux complex MexGHI-OpmD. | acridine_dye, fluoroquinolone, tetracycline |
| NODE_11 length_201695 cov_147.288804 | 90691 | 91794 | mexJ | 0/0 | 100 | 100 | AE004091.2:4120373-4119269 | mexJ is the membrane fusion protein of the MexJK multidrug efflux protein. | macrolide, tetracycline, triclosan |
| NODE_11 length_201695 cov_147.288804 | 91799 | 94876 | mexK | 0/0 | 100 | 99 | AE004091.2:4119265-4116187 | mexK is the inner membrane resistance-nodulation-cell division (RND) transporter in the MexJK multidrug efflux protein. | macrolide, tetracycline, triclosan |
| NODE_11 length_201695 cov_147.288804 | 89957 | 90595 | mexL | 0/0 | 100 | 100 | AE004091.2:4120468-4121107 | MexL is a specific repressor of mexJK transcription and autoregulates its own expression. | macrolide, tetracycline, triclosan |
| NODE_21 length_99743 cov_152.390484 | 77940 | 79097 | mexM | 0/0 | 100 | 99 | AB219523.1:21-1179 | mexM is the membrane fusion protein of the MexMN-OprM multidrug efflux complex. | phenicol |
| NODE_21 length_99743 cov_152.390484 | 74833 | 77943 | mexN | 0/0 | 100 | 99 | AB219523.1:1175-4286 | MexN is the inner membrane transporter of the MexMN-OprM multidrug efflux complex. | phenicol |
| NODE_13 length_148835 cov_135.704197 | 48684 | 49841 | mexP | 0/0 | 100 | 99 | AB219524.1:22-1180 | MexP is the membrane fusion protein of the MexPQ-OpmE multidrug efflux complex | acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline |
| NODE_13 length_148835 cov_135.704197 | 49838 | 52999 | mexQ | 0/0 | 100 | 100 | AB219524.1:1176-4338 | MexQ is the inner membrane transporter of the multidrug efflux pump MexPQ-OpmE. | acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline |
| NODE_10 length_217510 cov_146.673141 | 109573 | 110703 | mexV | 0/0 | 100 | 100 | AE004091.2:4903465-4904596 | MexV is the membrane fusion protein of the MexVW-OprM multidrug efflux complex. | acridine_dye, fluoroquinolone, macrolide, phenicol, tetracycline |
| NODE_10 length_217510 cov_146.673141 | 110754 | 113810 | mexW | 0/0 | 100 | 100 | NC_002516.2:4904646-4907703 | MexW is the RND-type membrane protein of the efflux complex MexVW-OprM. | acridine_dye, fluoroquinolone, macrolide, phenicol, tetracycline |
| NODE_15 length_137866 cov_138.039103 | 40929 | 42108 | mexX | 7/10 | 100 | 98 | AB015853:145-1315 | MexX is the membrane fusion protein of the MexXY-OprM multidrug efflux complex. | acridine_dye, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| NODE_15 length_137866 cov_138.039103 | 37776 | 40913 | mexY | 8/9 | 100 | 99 | AB015853:1330-4471 | MexY is the RND-type membrane protein of the efflux complex MexXY-OprM. | acridine_dye, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| NODE_37 length_60981 cov_137.803412 | 48125 | 49405 | MuxA | 0/0 | 100 | 100 | AE004091.2:2855291-2854010 | MuxA is a membrane fusion protein component of the efflux pump system MuxABC-OpmB in Pseudomonas aeruginosa. | aminocoumarin, macrolide, monobactam, tetracycline |
| NODE_37 length_60981 cov_137.803412 | 44997 | 48128 | MuxB | 0/0 | 100 | 100 | AE004091.2:2854014-2850882 | MuxB is one of the two necessary RND components in the Pseudomonas aeruginosa efflux pump system MuxABC-OpmB. | aminocoumarin, macrolide, monobactam, tetracycline |
| NODE_37 length_60981 cov_137.803412 | 41890 | 45000 | MuxC | 0/0 | 100 | 100 | AE004091.2:2850886-2847775 | MuxC is one of the two necessary RND components of the MuxABC-OpmB efflux pumps system in Pseudomonas aeruginosa. | aminocoumarin, macrolide, monobactam, tetracycline |
| NODE_37 length_60981 cov_137.803412 | 40397 | 41893 | OpmB | 0/0 | 100 | 100 | AE004091.2:2847779-2846282 | OpmB is an outer membrane efflux protein in Pseudomonas aeruginosa that shows functional cooperation with MuxABC to form the efflux pump system MuxABC-OpmB. | aminocoumarin, macrolide, monobactam, tetracycline |
| NODE_65 length_19066 cov_140.811364 | 14773 | 16236 | opmD | 0/0 | 100 | 100 | AE004091.2:4710620-4712084 | OpmD is the outer membrane channel protein of the efflux complex MexGHI-OpmD. | acridine_dye, fluoroquinolone, tetracycline |
| NODE_13 length_148835 cov_135.704197 | 52996 | 54471 | opmE | 0/0 | 100 | 99 | AB219524.1:4334-5810 | opmE is an outer membrane factor protein that is part of the multidrug efflux pump MexPQ-OpmE. | acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline |
| NODE_51 length_33311 cov_148.176235 | 2611 | 4059 | OpmH | 0/0 | 100 | 100 | AE004091.2:5584100-5585549 | OpmH is an outer membrane efflux protein required for triclosan-specific efflux pump function. | triclosan |
| NODE_3 length_345658 cov_168.996912 | 233437 | 234876 | OprJ | 0/0 | 100 | 99 | U57969:4622-6062 | OprJ is the outer membrane channel component of the MexCD-OprJ multidrug efflux complex. | aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| NODE_1 length_397627 cov_152.412054 | 168478 | 169935 | OprM | 0/0 | 100 | 99 | AE004091.2:476332-477790 | OprM is an outer membrane factor protein found in Pseudomonas aeruginosa and Burkholderia vietnamiensis. It is part of the MexAB-OprM MexVW-OprM MexXY-OprM and the AmrAB-OprM complex. | acridine_dye, aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| NODE_37 length_60981 cov_137.803412 | 7307 | 8725 | OprN | 0/0 | 100 | 100 | AE004091.2:2813193-2814612 | OprN is the outer membrane channel component of the MexEF-OprN multidrug efflux complex. | diaminopyrimidine, fluoroquinolone, phenicol |
| NODE_17 length_127532 cov_165.759578 | 19367 | 20155 | OXA-486 | 0/0 | 100 | 100 | CP038661.1:6223618-6224407 | Assigned by Lahey’s list of beta-lactamases no accessions or other information available | cephalosporin, penam |
| NODE_14 length_140896 cov_162.336446 | 60724 | 61917 | PDC-5 | 0/0 | 100 | 100 | FJ666068:0-1194 | PDC-5 is a extended-spectrum beta-lactamase found in Pseudomonas aeruginosa. | carbapenem, cephalosporin, monobactam |
| NODE_8 length_221112 cov_146.916013 | 142618 | 144051 | PmpM | 0/0 | 100 | 100 | AE004091.2:1473980-1472546 | PmpM is a multidrug efflux pump belonging to the MATE family of Pseudomonas aeruginosa. PmpM is an H+ drug antiporter and is the first reported case of an H+ coupled efflux pump in the MATE family. PmpM confers resistance to fluoroquinolones fradiomycin benzalkonium chloride chlorhexidine gluconate ethidium bromide tetraphenylphosphonium chloride (TPPCl) and rhodamine 6G. | aminoglycoside, benzalkonium_chloride, fluoroquinolone |
| NODE_12 length_153754 cov_137.417278 | 99934 | 100572 | Pseudomonas_aeruginosa_catB7 | 0/0 | 100 | 100 | NC_002516.2:780101-779462 | catB7 is a chromosome-encoded variant of the cat gene found in Pseudomonas aeruginosa | phenicol |
| NODE_7 length_236407 cov_139.946185 | 218098 | 218775 | Pseudomonas_aeruginosa_CpxR | 0/0 | 100 | 100 | LT673656.1:1885022-1884344 | CpxR is directly involved in activation of expression of RND efflux pump MexAB-OprM in P. aeruginosa. CpxR is required to enhance mexAB-oprM expression and drug resistance in the absence of repressor MexR. | aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| NODE_25 length_86952 cov_152.345301 | 17956 | 18288 | Pseudomonas_aeruginosa_emrE | 0/0 | 100 | 99 | AE004091.2:5606102-5606435 | EmrE is a small multidrug transporter that functions as a homodimer and that couples the efflux of small polyaromatic cations from the cell with the import of protons down an electrochemical gradient. Confers resistance to tetraphenylphosphonium methyl viologen gentamicin kanamycin and neomycin. | aminoglycoside |
| NODE_52 length_33244 cov_130.608798 | 22674 | 23144 | Pseudomonas_aeruginosa_soxR | 0/0 | 100 | 100 | AE004091.2:2503895-2503424 | SoxR is a redox-sensitive transcriptional activator that induces expression of a small regulon that includes the RND efflux pump-encoding operon mexGHI-opmD. SoxR was shown to be activated by pyocyanin. | acridine_dye, cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan |
| NODE_20 length_103396 cov_158.435496 | 21214 | 22365 | TriA | 0/0 | 100 | 100 | AE004091.2:177306-178458 | TriA is a membrane protein that is fused to TriB and both are required for the triclosan efflux pump function of TriABC-OpmH in P. aeruginosa. | triclosan |
| NODE_20 length_103396 cov_158.435496 | 20147 | 21217 | TriB | 0/0 | 100 | 100 | AE004091.2:178454-179525 | TriB is a membrane protein that is fused to TriA and both are required for the triclosan efflux pump function of TriABC-OpmH in P. aeruginosa. | triclosan |
| NODE_20 length_103396 cov_158.435496 | 17103 | 20150 | TriC | 0/0 | 100 | 100 | AE004091.2:179521-182569 | TriC is a resistance nodulation cell division (RND) transporter that is a part of TriABC-OpmH a triclosan-specific efflux protein. | triclosan |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| NODE_14 length_140896 cov_162.336446 | 74273 | 75076 | (AGly)aph(3’’)-IIb | 1/3 | 100 | 98 | X90856:388-1194 | (AGly)aph(3’’)-IIb | NA |
| NODE_17 length_127532 cov_165.759578 | 19367 | 20155 | (Bla)blaOXA-50 | 0/0 | 100 | 100 | AM117128:1-789 | (Bla)blaOXA-50 | NA |
| NODE_14 length_140896 cov_162.336446 | 60724 | 61917 | (Bla)blaPDC-212 | 0/0 | 100 | 100 | MF281076:1-1194 | (Bla)blaPDC-212 | NA |
| NODE_3 length_345658 cov_168.996912 | 95882 | 96079 | (Flq)crpP | 0/0 | 100 | 95 | NG_062203:101-298 | (Flq)crpP | NA |
| NODE_14 length_140896 cov_162.336446 | 91781 | 92989 | (Phe)bcr1 | 0/0 | 100 | 100 | NG_055652:101-1309 | (Phe)bcr1 | NA |
| NODE_12 length_153754 cov_137.417278 | 99934 | 100572 | (Phe)catB7 | 0/0 | 100 | 100 | AF036933:177-815 | (Phe)catB7 | NA |
Sample-08
Resfinder
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| NODE_3 length_461305 cov_12.085864 | 21302 | 22147 | aadK_1 | 1/9 | 99 | 97 | M26879 | aadK | Streptomycin |
| NODE_73 length_40102 cov_169.395103 | 10577 | 11383 | aph(3’)-IIb_2 | 0/0 | 100 | 99 | CP006832 | aph(3’)-IIb | |
| NODE_17 length_130165 cov_213.571375 | 80931 | 81719 | blaOXA-395_1 | 0/0 | 100 | 100 | AY306133 | blaOXA-395 | Amoxicillin, Ampicillin, Meropenem |
| NODE_135 length_12234 cov_159.062927 | 1782 | 2975 | blaPAO_2 | 0/0 | 100 | 100 | FJ666065 | blaPAO | |
| NODE_36 length_76943 cov_170.888976 | 20779 | 21417 | catB7_1 | 0/0 | 100 | 100 | AF036933 | catB7 | Chloramphenicol |
| NODE_18 length_129369 cov_161.634618 | 87491 | 87898 | fosA_4 | 0/0 | 100 | 99 | ACWU01000146 | fosA | Fosfomycin |
| NODE_11 length_144486 cov_14.474929 | 33932 | 34852 | mph(K)_1 | 0/0 | 100 | 99 | NC_000964 | mph(K) | Spiramycin, Telithromycin |
CARD
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| NODE_3 length_461305 cov_12.085864 | 21302 | 22147 | aadK | 1/9 | 99 | 97 | AL009126:2736536-2735681 | aadK is a chromosomal-encoded aminoglycoside nucleotidyltransferase gene in B. subtilis and Bacillus spp. | aminoglycoside |
| NODE_73 length_40102 cov_169.395103 | 10577 | 11383 | APH(3’)-IIb | 0/0 | 100 | 98 | X90856:387-1194 | APH(3’)-IIb is a chromosomal-encoded aminoglycoside phosphotransferase in P. aeruginosa | aminoglycoside |
| NODE_44 length_63322 cov_177.647498 | 45216 | 45377 | ArmR | 0/0 | 100 | 100 | AE004091.2:4165880-4165718 | ArmR a 53-amino-acid antirepressor allosterically inhibits MexR dimer-DNA binding by occupying a hydrophobic binding cavity within the center of the MexR dimer. ArmR up-regulation and MexR-ArmR complex formation have previously been shown to upregulate MexAB-OprM. | aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| NODE_47 length_61105 cov_163.037032 | 2926 | 4914 | arnA | 0/0 | 100 | 99 | AE004091.2:3982020-3984009 | arnA modifies lipid A with 4-amino-4-deoxy-L-arabinose (Ara4N) which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. arnA is found in E. coli and P. aeruginosa. | peptide |
| NODE_5 length_284152 cov_13.628373 | 254161 | 256731 | Bacillus_subtilis_mprF | 0/0 | 100 | 98 | AL009126:916777-919348 | MprF is a integral membrane protein that modifies the negatively-charged phosphatidylglycerol on the membrane surface. This confers resistance to cationic peptides that disrupt the cell membrane including defensins. Additionally large-scale mutations causing loss of function of the gene result in increased susceptibility to daptomycin. | peptide |
| NODE_93 length_28483 cov_162.120327 | 22644 | 24077 | basS | 0/0 | 100 | 100 | JQ340365:0-1434 | Histidine protein kinase sensor Lipid A modification gene, part of a two-component system involved in polymyxin resistance that senses high extracellular Fe(2+) | peptide |
| NODE_73 length_40102 cov_169.395103 | 28083 | 29291 | bcr-1 | 0/0 | 100 | 100 | CP012901.1:5980365-5979156 | Transmembrane protein which expels bicyclomycin from the cell leading to bicyclomycin resistance. Identified in Pseudomonas aeruginosa strains responsible for outbreaks in Brazil often appearing with blaSPM-1 another bicyclomycin resistance gene | bicyclomycin |
| NODE_3 length_461305 cov_12.085864 | 4141 | 5343 | blt | 0/0 | 100 | 99 | L32599:1236-2439 | blt is an MFS efflux pump that confers resistance to multiple drugs such as rhodamine and acridine dyes and fluoroquinolone antibiotics | acridine_dye, fluoroquinolone |
| NODE_6 length_230497 cov_11.104722 | 59175 | 60344 | bmr | 0/0 | 100 | 99 | M33768:194-1364 | bmr is an MFS antibiotic efflux pump that confers resistance to multiple drugs including acridine dyes fluoroquinolone antibiotics chloramphenicol and puromycin | acridine_dye, fluoroquinolone, nucleoside, phenicol |
| NODE_18 length_129369 cov_161.634618 | 87491 | 87898 | fosA | 0/0 | 100 | 99 | AE004091.2:1221690-1222098 | An enzyme that confers resistance to fosfomycin in Serratia marcescens by breaking the epoxide ring of the molecule. It depends on the cofactors Manganese (II) and Potassium and uses Glutathione (GSH) as the nucleophilic molecule. In Pseudomonas aeruginosa FosA catalyzes the conjugation of glutathione to carbon-1 of fosfomycin rendering it ineffective as an antibacterial drug. | fosfomycin |
| NODE_11 length_144486 cov_14.474929 | 46747 | 48180 | lmrB | 0/0 | 100 | 98 | JYFL01000006.1:113503-112069 | lmrB is a chromosomally-encoded efflux pump that confers resistance to lincosamides in Bacillus subtilis | lincosamide |
| NODE_23 length_102845 cov_178.435554 | 95244 | 96395 | MexA | 0/0 | 100 | 100 | AE004091.2:472023-473175 | MexA is the membrane fusion protein of the MexAB-OprM multidrug efflux complex. | aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| NODE_23 length_102845 cov_178.435554 | 92088 | 95228 | MexB | 0/0 | 100 | 100 | L11616:1569-4710 | MexB is the inner membrane multidrug exporter of the efflux complex MexAB-OprM. | aminocoumarin, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| NODE_13 length_140748 cov_189.320009 | 118446 | 119609 | MexC | 0/0 | 100 | 100 | U57969:294-1458 | MexC is the membrane fusion protein of the MexCD-OprJ multidrug efflux complex. | aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| NODE_13 length_140748 cov_189.320009 | 115287 | 118418 | MexD | 2/2 | 100 | 99 | U57969:1485-4617 | MexD is the multidrug inner membrane transporter of the MexCD-OprJ complex. | aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| NODE_156 length_8241 cov_152.872611 | 4122 | 5366 | MexE | 0/0 | 100 | 100 | AE004091.2:2808742-2809987 | MexE is the membrane fusion protein of the MexEF-OprN multidrug efflux complex. | diaminopyrimidine, fluoroquinolone, phenicol |
| NODE_156 length_8241 cov_152.872611 | 912 | 4100 | MexF | 0/0 | 100 | 100 | AE004091.2:2810008-2813197 | MexF is the multidrug inner membrane transporter of the MexEF-OprN complex. mexF corresponds to 2 loci in Pseudomonas aeruginosa PAO1 (gene name: mexF/mexB) and 4 loci in Pseudomonas aeruginosa LESB58 (gene name: mexD/mexB). | diaminopyrimidine, fluoroquinolone, phenicol |
| NODE_112 length_18145 cov_150.940890 | 7579 | 8025 | mexG | 0/0 | 100 | 100 | AE004091.2:4705955-4706402 | MexG is a membrane protein required for MexGHI-OpmD efflux activity. | acridine_dye, fluoroquinolone, tetracycline |
| NODE_112 length_18145 cov_150.940890 | 6459 | 7571 | mexH | 0/0 | 100 | 100 | AE004091.2:4706409-4707522 | MexH is the membrane fusion protein of the efflux complex MexGHI-OpmD. | acridine_dye, fluoroquinolone, tetracycline |
| NODE_112 length_18145 cov_150.940890 | 3357 | 6446 | mexI | 0/0 | 100 | 100 | AE004091.2:4707534-4710624 | MexI is the inner membrane transporter of the efflux complex MexGHI-OpmD. | acridine_dye, fluoroquinolone, tetracycline |
| NODE_14 length_139775 cov_173.618098 | 111240 | 112343 | mexJ | 0/0 | 100 | 100 | AE004091.2:4120373-4119269 | mexJ is the membrane fusion protein of the MexJK multidrug efflux protein. | macrolide, tetracycline, triclosan |
| NODE_14 length_139775 cov_173.618098 | 108158 | 111235 | mexK | 0/0 | 100 | 100 | AE004091.2:4119265-4116187 | mexK is the inner membrane resistance-nodulation-cell division (RND) transporter in the MexJK multidrug efflux protein. | macrolide, tetracycline, triclosan |
| NODE_14 length_139775 cov_173.618098 | 112439 | 113077 | mexL | 0/0 | 100 | 100 | AE004091.2:4120468-4121107 | MexL is a specific repressor of mexJK transcription and autoregulates its own expression. | macrolide, tetracycline, triclosan |
| NODE_28 length_91222 cov_150.946031 | 69420 | 70577 | mexM | 0/0 | 100 | 99 | AB219523.1:21-1179 | mexM is the membrane fusion protein of the MexMN-OprM multidrug efflux complex. | phenicol |
| NODE_28 length_91222 cov_150.946031 | 66313 | 69423 | mexN | 0/0 | 100 | 99 | AB219523.1:1175-4286 | MexN is the inner membrane transporter of the MexMN-OprM multidrug efflux complex. | phenicol |
| NODE_47 length_61105 cov_163.037032 | 43133 | 44290 | mexP | 0/0 | 100 | 99 | AB219524.1:22-1180 | MexP is the membrane fusion protein of the MexPQ-OpmE multidrug efflux complex | acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline |
| NODE_47 length_61105 cov_163.037032 | 44287 | 47448 | mexQ | 0/0 | 100 | 100 | AB219524.1:1176-4338 | MexQ is the inner membrane transporter of the multidrug efflux pump MexPQ-OpmE. | acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline |
| NODE_8 length_217613 cov_172.909560 | 106785 | 107915 | mexV | 0/0 | 100 | 100 | AE004091.2:4903465-4904596 | MexV is the membrane fusion protein of the MexVW-OprM multidrug efflux complex. | acridine_dye, fluoroquinolone, macrolide, phenicol, tetracycline |
| NODE_8 length_217613 cov_172.909560 | 103678 | 106734 | mexW | 0/0 | 100 | 100 | NC_002516.2:4904646-4907703 | MexW is the RND-type membrane protein of the efflux complex MexVW-OprM. | acridine_dye, fluoroquinolone, macrolide, phenicol, tetracycline |
| NODE_33 length_82939 cov_139.771319 | 47645 | 48824 | mexX | 7/10 | 100 | 98 | AB015853:145-1315 | MexX is the membrane fusion protein of the MexXY-OprM multidrug efflux complex. | acridine_dye, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| NODE_33 length_82939 cov_139.771319 | 44492 | 47629 | mexY | 8/9 | 100 | 99 | AB015853:1330-4471 | MexY is the RND-type membrane protein of the efflux complex MexXY-OprM. | acridine_dye, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| NODE_11 length_144486 cov_14.474929 | 33932 | 34852 | mphK | 0/0 | 100 | 99 | CP010314.1:275837-276758 | A chromosomal macrolide phosphotransferase identified from Bacillus subtilis | macrolide |
| NODE_58 length_52788 cov_133.998596 | 39921 | 41201 | MuxA | 0/0 | 100 | 100 | AE004091.2:2855291-2854010 | MuxA is a membrane fusion protein component of the efflux pump system MuxABC-OpmB in Pseudomonas aeruginosa. | aminocoumarin, macrolide, monobactam, tetracycline |
| NODE_58 length_52788 cov_133.998596 | 36793 | 39924 | MuxB | 0/0 | 100 | 100 | AE004091.2:2854014-2850882 | MuxB is one of the two necessary RND components in the Pseudomonas aeruginosa efflux pump system MuxABC-OpmB. | aminocoumarin, macrolide, monobactam, tetracycline |
| NODE_58 length_52788 cov_133.998596 | 33686 | 36796 | MuxC | 0/0 | 100 | 100 | AE004091.2:2850886-2847775 | MuxC is one of the two necessary RND components of the MuxABC-OpmB efflux pumps system in Pseudomonas aeruginosa. | aminocoumarin, macrolide, monobactam, tetracycline |
| NODE_58 length_52788 cov_133.998596 | 32193 | 33689 | OpmB | 0/0 | 100 | 99 | AE004091.2:2847779-2846282 | OpmB is an outer membrane efflux protein in Pseudomonas aeruginosa that shows functional cooperation with MuxABC to form the efflux pump system MuxABC-OpmB. | aminocoumarin, macrolide, monobactam, tetracycline |
| NODE_112 length_18145 cov_150.940890 | 1897 | 3360 | opmD | 0/0 | 100 | 100 | AE004091.2:4710620-4712084 | OpmD is the outer membrane channel protein of the efflux complex MexGHI-OpmD. | acridine_dye, fluoroquinolone, tetracycline |
| NODE_47 length_61105 cov_163.037032 | 47445 | 48920 | opmE | 0/0 | 100 | 99 | AB219524.1:4334-5810 | opmE is an outer membrane factor protein that is part of the multidrug efflux pump MexPQ-OpmE. | acridine_dye, carbapenem, diaminopyrimidine, macrolide, phenicol, tetracycline |
| NODE_83 length_33718 cov_171.414702 | 2973 | 4421 | OpmH | 0/0 | 100 | 100 | AE004091.2:5584100-5585549 | OpmH is an outer membrane efflux protein required for triclosan-specific efflux pump function. | triclosan |
| NODE_13 length_140748 cov_189.320009 | 113842 | 115281 | OprJ | 0/0 | 100 | 99 | U57969:4622-6062 | OprJ is the outer membrane channel component of the MexCD-OprJ multidrug efflux complex. | aminocoumarin, aminoglycoside, cephalosporin, diaminopyrimidine, fluoroquinolone, macrolide, penam, phenicol, tetracycline |
| NODE_23 length_102845 cov_178.435554 | 90629 | 92086 | OprM | 0/0 | 100 | 100 | AE004091.2:476332-477790 | OprM is an outer membrane factor protein found in Pseudomonas aeruginosa and Burkholderia vietnamiensis. It is part of the MexAB-OprM MexVW-OprM MexXY-OprM and the AmrAB-OprM complex. | acridine_dye, aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| NODE_17 length_130165 cov_213.571375 | 80931 | 81719 | OXA-50 | 0/0 | 100 | 99 | AY306130:0-789 | OXA-50 is a beta-lactamase found in Pseudomonas aeruginosa. It confers decreased susceptibility to ampicillin and ticarcillin and interestingly to moxalactam and meropenem in P. aeruginosa but not in E. coli. Also confers resistance to piperacillin-tazobactam and cephalotin. | cephalosporin, penam |
| NODE_135 length_12234 cov_159.062927 | 1782 | 2975 | PDC-8 | 0/0 | 100 | 100 | FJ666071:0-1194 | PDC-8 is a extended-spectrum beta-lactamase found in Pseudomonas aeruginosa. | carbapenem, cephalosporin, monobactam |
| NODE_67 length_42423 cov_157.450786 | 35344 | 36777 | PmpM | 0/0 | 100 | 100 | AE004091.2:1473980-1472546 | PmpM is a multidrug efflux pump belonging to the MATE family of Pseudomonas aeruginosa. PmpM is an H+ drug antiporter and is the first reported case of an H+ coupled efflux pump in the MATE family. PmpM confers resistance to fluoroquinolones fradiomycin benzalkonium chloride chlorhexidine gluconate ethidium bromide tetraphenylphosphonium chloride (TPPCl) and rhodamine 6G. | aminoglycoside, benzalkonium_chloride, fluoroquinolone |
| NODE_36 length_76943 cov_170.888976 | 20779 | 21417 | Pseudomonas_aeruginosa_catB7 | 0/0 | 100 | 100 | NC_002516.2:780101-779462 | catB7 is a chromosome-encoded variant of the cat gene found in Pseudomonas aeruginosa | phenicol |
| NODE_19 length_117660 cov_166.991699 | 91734 | 92411 | Pseudomonas_aeruginosa_CpxR | 0/0 | 100 | 100 | LT673656.1:1885022-1884344 | CpxR is directly involved in activation of expression of RND efflux pump MexAB-OprM in P. aeruginosa. CpxR is required to enhance mexAB-oprM expression and drug resistance in the absence of repressor MexR. | aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, diaminopyrimidine, fluoroquinolone, macrolide, monobactam, penam, penem, peptide, phenicol, sulfonamide, tetracycline |
| NODE_60 length_51087 cov_173.616683 | 33192 | 33524 | Pseudomonas_aeruginosa_emrE | 0/0 | 100 | 99 | AE004091.2:5606102-5606435 | EmrE is a small multidrug transporter that functions as a homodimer and that couples the efflux of small polyaromatic cations from the cell with the import of protons down an electrochemical gradient. Confers resistance to tetraphenylphosphonium methyl viologen gentamicin kanamycin and neomycin. | aminoglycoside |
| NODE_11 length_144486 cov_14.474929 | 97307 | 97900 | tmrB | 0/0 | 100 | 98 | AL009126.3:339749-339155 | tmrB is an ATP-binding tunicamycin resistance protein found in Bacillus subtilis | nucleoside |
| NODE_75 length_38110 cov_172.331607 | 15747 | 16898 | TriA | 0/0 | 100 | 100 | AE004091.2:177306-178458 | TriA is a membrane protein that is fused to TriB and both are required for the triclosan efflux pump function of TriABC-OpmH in P. aeruginosa. | triclosan |
| NODE_75 length_38110 cov_172.331607 | 16895 | 17965 | TriB | 0/0 | 100 | 100 | AE004091.2:178454-179525 | TriB is a membrane protein that is fused to TriA and both are required for the triclosan efflux pump function of TriABC-OpmH in P. aeruginosa. | triclosan |
| NODE_75 length_38110 cov_172.331607 | 17962 | 21009 | TriC | 0/0 | 100 | 100 | AE004091.2:179521-182569 | TriC is a resistance nodulation cell division (RND) transporter that is a part of TriABC-OpmH a triclosan-specific efflux protein. | triclosan |
| NODE_25 length_99094 cov_13.655726 | 68547 | 70190 | vmlR | 0/0 | 100 | 98 | NC_000964.3:606379-604735 | vmlR is an ABC-F ATPase ribosomal protection protein identified in Bacillus subtilus. Shown to confer resistance to lincomycin and streptogramin A virginiamycin. Described by Crowe-McAuliffe et al. 2018. | lincosamide, macrolide, oxazolidinone, phenicol, pleuromutilin, streptogramin, tetracycline |
| NODE_2 length_474708 cov_11.377544 | 433068 | 433406 | ykkC | 0/0 | 100 | 100 | AL009126:1376516-1376855 | ykkC is an SMR-type protein that is a subunit of the ykkCD efflux pump | aminoglycoside, phenicol, tetracycline |
| NODE_2 length_474708 cov_11.377544 | 432751 | 433068 | ykkD | 0/0 | 100 | 99 | AL009126:1376854-1377172 | ykkD is an SMR-type protein that is a subunit of the ykkCD efflux pump | aminoglycoside, phenicol, tetracycline |
ARG-ANNOT
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| NODE_73 length_40102 cov_169.395103 | 10577 | 11383 | (AGly)aph(3’’)-IIb | 0/0 | 100 | 98 | X90856:388-1194 | (AGly)aph(3’’)-IIb | NA |
| NODE_1 length_899700 cov_13.986462 | 856746 | 857267 | (AGly)satA | 0/0 | 100 | 96 | NG_064662:101_622 | (AGly)satA | NA |
| NODE_17 length_130165 cov_213.571375 | 80931 | 81719 | (Bla)blaOXA-50 | 0/0 | 100 | 99 | AM117128:1-789 | (Bla)blaOXA-50 | NA |
| NODE_135 length_12234 cov_159.062927 | 1782 | 2975 | (Bla)blaPDC-212 | 0/0 | 100 | 99 | MF281076:1-1194 | (Bla)blaPDC-212 | NA |
| NODE_11 length_144486 cov_14.474929 | 46747 | 48186 | (MLS)Lmr(B) | 0/0 | 100 | 98 | NG_047912101-1540:1440 | (MLS)Lmr(B) | NA |
| NODE_73 length_40102 cov_169.395103 | 28083 | 29291 | (Phe)bcr1 | 0/0 | 100 | 100 | NG_055652:101-1309 | (Phe)bcr1 | NA |
| NODE_36 length_76943 cov_170.888976 | 20779 | 21417 | (Phe)catB7 | 0/0 | 100 | 100 | AF036933:177-815 | (Phe)catB7 | NA |
Summary figures
Presence/Absence of antimicrobial resistance genes (coverage and identity > 90%) on each sample.
Select the database:
Resfinder
CARD
ARG-ANNOT
Virulence genes
The search of virulence genes was performed by screening the genome against Virulence Factors Data Base (VFDB, L. Chen et al., 2005) by using Abricate. Any hit with coverage and/or identity below 90% was removed. If you would like to inspect hits with coverage and/or identity below 90%, please go to the corresponing output directory.
| Field | Description |
|---|---|
| Contig | Contig name where the virulence gene was found |
| Start | Start position of the virulence gene within the contig |
| End | End position of the virulence gene within the contig |
| Gene | Virulence gene |
| Gaps | Gaps in subject (genome) and query (virulence gene) |
| Coverage | Proportion (%) of the gene covered |
| Identity | Proportion (%) of exact nucleotide matches |
| Accession | Accesion number of the virulence gene |
| Product | Virulence gene product |
Select the sample
Sample-01
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| NODE_102 length_14683 cov_166.529371 | 305 | 1474 | alg44 | 0/0 | 100 | 100 | NP_252232 | (alg44) alginate biosynthesis protein Alg8 [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_102 length_14683 cov_166.529371 | 1557 | 3041 | alg8 | 0/0 | 100 | 100 | NP_252231 | (alg8) alginate-c5-mannuronan-epimerase AlgG [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_362 length_4964 cov_164.459382 | 2298 | 3743 | algA | 0/0 | 100 | 99 | NP_252241 | (algA) phosphomannose isomerase / guanosine 5’-diphospho-D-mannose pyrophosphorylase [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_29 length_28201 cov_225.117871 | 14310 | 15659 | algB | 0/0 | 100 | 100 | NP_254170 | (algB) two-component response regulator AlgB [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_69 length_18586 cov_218.640391 | 16309 | 17700 | algC | 0/0 | 100 | 100 | NP_254009 | (algC) phosphomannomutase AlgC [Alginate biosynthesis (CVF522)] [Pseudomonas aeruginosa PAO1] |
| NODE_102 length_14683 cov_166.529371 | 3181 | 4491 | algD | 0/0 | 100 | 100 | NP_252230 | (algD) GDP-mannose 6-dehydrogenase AlgD [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_546 length_2688 cov_133.094983 | 1109 | 2581 | algE | 0/0 | 100 | 100 | NP_252234 | (algE) alginate biosynthetic protein AlgK precursor [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_362 length_4964 cov_164.459382 | 1451 | 2101 | algF | 0/0 | 100 | 100 | NP_252240 | (algF) alginate o-acetyltransferase AlgF [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_683 length_1665 cov_213.546599 | 107 | 1665 | algG | 0/0 | 96 | 100 | NP_252235 | (algG) outer membrane protein AlgE [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_362 length_4964 cov_164.459382 | 203 | 1378 | algJ | 0/0 | 100 | 100 | NP_252239 | (algJ) alginate o-acetyltransferase AlgJ [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_428 length_4061 cov_202.422942 | 1348 | 2451 | algL | 0/0 | 100 | 100 | NP_252237 | (algL) poly(beta-d-mannuronate) lyase precursor AlgL [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_80 length_17506 cov_224.010787 | 1454 | 1936 | algQ | 0/0 | 100 | 100 | NP_253942 | (algQ) Alginate regulatory protein AlgQ [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_80 length_17506 cov_224.010787 | 7081 | 7827 | algR | 0/0 | 100 | 100 | NP_253948 | (algR) alginate biosynthesis regulatory protein AlgR [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_21 length_31723 cov_181.748499 | 3396 | 3977 | algU | 0/0 | 100 | 100 | NP_249453 | (algU) alginate biosynthesis protein AlgZ/FimS [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_428 length_4061 cov_202.422942 | 1 | 1344 | algX | 0/0 | 94 | 100 | NP_252236 | (algX) alginate biosynthesis protein AlgX [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_80 length_17506 cov_224.010787 | 7832 | 8908 | algZ | 0/0 | 100 | 100 | NP_253949 | (algZ) sigma factor AlgU [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_203 length_8943 cov_139.185315 | 3162 | 4601 | aprA | 0/0 | 100 | 100 | NP_249940 | (aprA) alkaline metalloproteinase precursor [Alkaline protease (VF0090)] [Pseudomonas aeruginosa PAO1] |
| NODE_316 length_5946 cov_136.478957 | 2960 | 3991 | chpB | 0/0 | 100 | 100 | NP_249105 | (chpB) probable methylesterase [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_316 length_5946 cov_136.478957 | 2457 | 2963 | chpC | 0/0 | 100 | 99 | NP_249106 | (chpC) probable chemotaxis protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_316 length_5946 cov_136.478957 | 1655 | 2449 | chpD | 0/0 | 100 | 99 | NP_249107 | (chpD) probable transcriptional regulator [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_316 length_5946 cov_136.478957 | 968 | 1579 | chpE | 0/0 | 100 | 99 | NP_249108 | (chpE) probable chemotaxis protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_91 length_16285 cov_225.899864 | 3033 | 4394 | exoS | 0/0 | 100 | 99 | NP_252530 | (exoS) type III secretion system effector ExoS ADP ribosyltransferase activity and GTPase-activating protein activity [ExoS (VF0096)] [Pseudomonas aeruginosa PAO1] |
| NODE_94 length_15845 cov_290.717212 | 4185 | 5558 | exoT | 0/0 | 100 | 99 | NP_248734 | (exoT) type III secretion system effector ExoT ADP ribosyltransferase activity and GTPase-activating protein activity [ExoT (VF0097)] [Pseudomonas aeruginosa PAO1] |
| NODE_46 length_22834 cov_124.757701 | 11847 | 12983 | exoY | 0/0 | 100 | 100 | NP_250881 | (exoY) type III secretion system effector ExoY adenylate cyclase [ExoY (VF0099)] [Pseudomonas aeruginosa PAO1] |
| NODE_531 length_2864 cov_158.108001 | 751 | 1587 | exsA | 0/0 | 100 | 100 | NP_250404 | (exsA) type III secretion system regulatory protein ExsA [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_531 length_2864 cov_158.108001 | 40 | 453 | exsB | 0/0 | 100 | 98 | NP_250403 | (exsB) type III secretion system piolitin ExsB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_549 length_2650 cov_162.980567 | 156 | 593 | exsC | 0/0 | 100 | 99 | NP_250401 | (exsC) type III secretion system regulatory protein ExsC [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_531 length_2864 cov_158.108001 | 1685 | 2515 | exsD | 0/0 | 100 | 99 | NP_250405 | (exsD) type III secretion system regulatory protein ExsD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_42 length_23440 cov_240.321748 | 7101 | 7610 | fimT | 0/0 | 100 | 100 | NP_253239 | (fimT) type 4 fimbrial biogenesis protein FimT [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_42 length_23440 cov_240.321748 | 7716 | 8222 | fimU | 0/0 | 100 | 100 | NP_253240 | (fimU) type 4 fimbrial biogenesis protein FimU [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_116 length_13297 cov_172.942209 | 9829 | 10671 | fleN | 0/0 | 100 | 100 | NP_250145 | (fleN) flagellar synthesis regulator FleN [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_15 length_39907 cov_195.024479 | 1692 | 3164 | fleQ | 0/0 | 100 | 99 | NP_249788 | (fleQ) transcriptional regulator FleQ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_15 length_39907 cov_195.024479 | 371 | 1579 | fleS | 0/0 | 100 | 99 | NP_249789 | (fleS) two-component sensor [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_84 length_17274 cov_168.998663 | 5672 | 6370 | flgA | 0/0 | 100 | 100 | NP_252040 | (flgA) flagellar basal body P-ring biosynthesis protein FlgA [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_15 length_39907 cov_195.024479 | 29594 | 30001 | flgB | 0/0 | 100 | 100 | NP_249768 | (flgB) flagellar basal body rod protein FlgB [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_15 length_39907 cov_195.024479 | 29148 | 29588 | flgC | 0/0 | 100 | 100 | NP_249769 | (flgC) flagellar basal-body rod protein FlgC [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_15 length_39907 cov_195.024479 | 28422 | 29135 | flgD | 0/0 | 100 | 100 | NP_249770 | (flgD) flagellar basal-body rod modification protein FlgD [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_15 length_39907 cov_195.024479 | 27006 | 28394 | flgE | 0/0 | 100 | 100 | NP_249771 | (flgE) flagellar hook protein FlgE [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_15 length_39907 cov_195.024479 | 26039 | 26788 | flgF | 0/0 | 100 | 100 | NP_249772 | (flgF) flagellar basal-body rod protein FlgF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_15 length_39907 cov_195.024479 | 25207 | 25992 | flgG | 0/0 | 100 | 100 | NP_249773 | (flgG) flagellar basal-body rod protein FlgG [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_15 length_39907 cov_195.024479 | 24466 | 25161 | flgH | 0/0 | 100 | 99 | NP_249774 | (flgH) flagellar L-ring protein precursor FlgH [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_15 length_39907 cov_195.024479 | 23345 | 24454 | flgI | 0/0 | 100 | 100 | NP_249775 | (flgI) flagellar P-ring protein precursor FlgI [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_15 length_39907 cov_195.024479 | 22132 | 23334 | flgJ | 0/0 | 100 | 100 | NP_249776 | (flgJ) flagellar rod assembly protein/muramidase FlgJ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_84 length_17274 cov_168.998663 | 5204 | 5527 | flgM | 0/0 | 100 | 100 | NP_252041 | (flgM) negative regulator of flagellin synthesis [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_84 length_17274 cov_168.998663 | 4679 | 5149 | flgN | 0/0 | 100 | 100 | NP_252042 | (flgN) flagella synthesis protein FlgN [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_116 length_13297 cov_172.942209 | 6194 | 8317 | flhA | 0/0 | 100 | 100 | NP_250143 | (flhA) flagellar biosynthesis protein FlhA [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_116 length_13297 cov_172.942209 | 2202 | 3338 | flhB | 0/0 | 100 | 100 | NP_250140 | (flhB) flagellar biosynthetic protein FlhB [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_116 length_13297 cov_172.942209 | 8401 | 9690 | flhF | 0/0 | 100 | 100 | NP_250144 | (flhF) flagellar biosynthesis protein FlhF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_116 length_13297 cov_172.942209 | 10668 | 11411 | fliA | 0/0 | 100 | 100 | NP_250146 | (fliA) flagellar biosynthesis sigma factor FliA [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_543 length_2724 cov_146.667548 | 1049 | 1378 | fliE | 0/0 | 100 | 100 | NP_249791 | (fliE) flagellar hook-basal body complex protein FliE [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_264 length_7287 cov_157.346186 | 782 | 1798 | fliG | 0/0 | 100 | 100 | NP_249793 | (fliG) flagellar motor switch protein G [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_264 length_7287 cov_157.346186 | 1800 | 2606 | fliH | 0/0 | 100 | 99 | NP_249794 | (fliH) flagellar assembly protein H [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_264 length_7287 cov_157.346186 | 2596 | 3951 | fliI | 0/0 | 100 | 99 | NP_249795 | (fliI) flagellum-specific ATP synthase FliI [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_264 length_7287 cov_157.346186 | 3965 | 4408 | fliJ | 0/0 | 100 | 100 | NP_249796 | (fliJ) flagellar protein FliJ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_347 length_5156 cov_153.604056 | 2360 | 3643 | fliK | 0/0 | 100 | 100 | NP_250132 | (fliK) flagellar hook-length control protein FliK [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_347 length_5156 cov_153.604056 | 1595 | 2116 | fliL | 0/0 | 100 | 100 | NP_250133 | (fliL) flagellar basal body protein FliL [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_347 length_5156 cov_153.604056 | 616 | 1587 | fliM | 0/0 | 100 | 100 | NP_250134 | (fliM) flagellar motor switch protein FliM [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_347 length_5156 cov_153.604056 | 115 | 588 | fliN | 0/0 | 100 | 100 | NP_250135 | (fliN) flagellar motor switch protein FliN [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_116 length_13297 cov_172.942209 | 342 | 1109 | fliP | 0/0 | 100 | 100 | NP_250137 | (fliP) flagellar biosynthetic protein FliP [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_116 length_13297 cov_172.942209 | 1154 | 1423 | fliQ | 0/0 | 100 | 100 | NP_250138 | (fliQ) flagellar biosynthetic protein FliQ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_116 length_13297 cov_172.942209 | 1423 | 2199 | fliR | 0/0 | 100 | 99 | NP_250139 | (fliR) flagellar biosynthetic protein FliR [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_459 length_3755 cov_141.280587 | 315 | 2477 | fptA | 0/0 | 100 | 100 | NP_252911 | (fptA) Fe(III)-pyochelin receptor precursor [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_473 length_3603 cov_244.857913 | 2521 | 3009 | hcp1 | 0/0 | 100 | 100 | NP_248775 | (hcp1) type VI secretion system substrate Hcp1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_473 length_3603 cov_244.857913 | 418 | 936 | hsiB1/vipA | 0/0 | 100 | 100 | NP_248773 | (hsiB1/vipA) type VI secretion system tubule-forming protein VipA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_473 length_3603 cov_244.857913 | 949 | 2445 | hsiC1/vipB | 0/0 | 100 | 100 | NP_248774 | (hsiC1/vipB) type VI secretion system tubule-forming protein VipB [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_735 length_1397 cov_116.084848 | 417 | 926 | hsiF1 | 0/0 | 100 | 100 | NP_248777 | (hsiF1) type VI secretion system hcp secretion island protein HsiF1 a gp25-like protein but not exhibit lysozyme activity [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_582 length_2343 cov_145.762577 | 996 | 2042 | hsiH1 | 0/0 | 100 | 100 | NP_248779 | (hsiH1) type VI secretion system hcp secretion island protein HsiH1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_552 length_2638 cov_113.814135 | 1179 | 2513 | hsiJ1 | 0/0 | 100 | 99 | NP_248769 | (hsiJ1) type VI secretion system hcp secretion island protein HsiJ1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_343 length_5173 cov_104.658556 | 1353 | 4661 | icmF1/tssM1 | 1/3 | 100 | 99 | NP_248767 | (icmF1/tssM1) type VI secretion system protein IcmF1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_518 length_3040 cov_109.403645 | 1722 | 2978 | lasA | 0/0 | 100 | 99 | NP_250562 | (lasA) LasA protease precursor [LasA (VF0088)] [Pseudomonas aeruginosa PAO1] |
| NODE_51 length_22415 cov_195.410959 | 1246 | 2742 | lasB | 0/0 | 100 | 100 | NP_252413 | (lasB) elastase LasB [LasB (VF0087)] [Pseudomonas aeruginosa PAO1] |
| NODE_60 length_20717 cov_147.679457 | 17046 | 17651 | lasI | 0/0 | 100 | 100 | NP_250123 | (lasI) autoinducer synthesis protein LasI [Quorum sensing (VF0093)] [Pseudomonas aeruginosa PAO1] |
| NODE_552 length_2638 cov_113.814135 | 699 | 1163 | lip1 | 0/0 | 100 | 100 | NP_248770 | (lip1) lipoprotein [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_168 length_10450 cov_125.523667 | 5713 | 5931 | mbtH-like | 0/0 | 100 | 100 | NP_251102 | (mbtH-like) MbtH-like protein from the pyoverdine cluster [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_268 length_7091 cov_183.298688 | 4101 | 4952 | motA | 0/0 | 100 | 100 | NP_253641 | (motA) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_268 length_7091 cov_183.298688 | 3038 | 4081 | motB | 0/0 | 100 | 100 | NP_253640 | (motB) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_476 length_3586 cov_140.300940 | 2149 | 2889 | motC | 0/0 | 100 | 100 | NP_250151 | (motC) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_476 length_3586 cov_140.300940 | 1246 | 2136 | motD | 0/0 | 100 | 100 | NP_250152 | (motD) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_109 length_13924 cov_168.000794 | 7269 | 8234 | motY | 0/0 | 100 | 100 | NP_252216 | (motY) probable outer membrane protein precursor [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_21 length_31723 cov_181.748499 | 4009 | 4582 | mucA | 1/11 | 98 | 98 | NP_249454 | (mucA) alkaline metalloproteinase precursor [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_21 length_31723 cov_181.748499 | 4591 | 5541 | mucB | 0/0 | 100 | 100 | NP_249455 | (mucB) anti-sigma factor MucA inhibitor of alg gene expression [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_21 length_31723 cov_181.748499 | 5538 | 5993 | mucC | 0/0 | 100 | 100 | NP_249456 | (mucC) negative regulator for alginate biosynthesis MucB [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_21 length_31723 cov_181.748499 | 6033 | 7457 | mucD | 0/0 | 100 | 100 | NP_249457 | (mucD) serine protease MucD precursor [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| NODE_311 length_6008 cov_184.117855 | 3934 | 4203 | mucE | 0/0 | 100 | 100 | NP_252722 | (mucE) small envelope protein MucE [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| NODE_14 length_40100 cov_212.260475 | 17927 | 19279 | mucP | 0/0 | 100 | 100 | NP_252339 | (mucP) metalloprotease protease [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| NODE_38 length_23952 cov_252.828607 | 21854 | 23284 | pchA | 0/0 | 100 | 100 | NP_252921 | (pchA) salicylate biosynthesis isochorismate synthase PchA [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_38 length_23952 cov_252.828607 | 23281 | 23586 | pchB | 0/0 | 100 | 100 | NP_252920 | (pchB) salicylate biosynthesis protein PchB [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_430 length_4042 cov_112.382346 | 240 | 1883 | pchD | 0/0 | 100 | 99 | NP_252918 | (pchD) pyochelin biosynthesis protein PchD [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_430 length_4042 cov_112.382346 | 2113 | 3003 | pchR | 0/0 | 100 | 100 | NP_252917 | (pchR) transcriptional regulator PchR [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_562 length_2510 cov_83.600493 | 1420 | 1698 | pcr1 | 0/0 | 100 | 100 | NP_250390 | (pcr1) type III secretion system protein Pcr1 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_562 length_2510 cov_83.600493 | 1685 | 2056 | pcr2 | 0/0 | 100 | 99 | NP_250391 | (pcr2) type III secretion system protein Pcr2 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_562 length_2510 cov_83.600493 | 2053 | 2418 | pcr3 | 0/0 | 100 | 99 | NP_250392 | (pcr3) type III secretion system protein Pcr3 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_382 length_4676 cov_131.769733 | 2304 | 4424 | pcrD | 0/0 | 100 | 99 | NP_250394 | (pcrD) type III secretion system protein PcrD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_382 length_4676 cov_131.769733 | 1549 | 1845 | pcrG | 0/0 | 100 | 100 | NP_250396 | (pcrG) type III secretion system cytoplasmic regulator PcrG [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_382 length_4676 cov_131.769733 | 140 | 646 | pcrH | 1/3 | 100 | 99 | NP_250398 | (pcrH) type III secretion system regulatory protein PcrH [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_382 length_4676 cov_131.769733 | 1873 | 2307 | pcrR | 0/0 | 100 | 100 | NP_250395 | (pcrR) type III secretion system regulatory protein PcrR [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_382 length_4676 cov_131.769733 | 655 | 1539 | pcrV | 0/0 | 100 | 99 | NP_250397 | (pcrV) type III secretion system hydrophilic translocator needle tip protein PcrV [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_386 length_4555 cov_215.238053 | 710 | 1152 | phzA1 | 0/0 | 91 | 96 | NP_252899 | (phzA1) phenazine biosynthesis protein PhzA [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| NODE_501 length_3220 cov_268.846643 | 631 | 1119 | phzA1 | 0/0 | 100 | 100 | NP_252899 | (phzA1) phenazine biosynthesis protein PhzA [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| NODE_501 length_3220 cov_268.846643 | 113 | 601 | phzB1 | 0/0 | 100 | 99 | NP_252900 | (phzB1) phenazine biosynthesis protein PhzB [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| NODE_449 length_3848 cov_81.599841 | 292 | 936 | phzG1 | 0/0 | 100 | 99 | NP_252906 | (phzG1) phenazine biosynthesis protein PhzG pyridoxamine 5’-phosphate oxidase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| NODE_288 length_6596 cov_210.311551 | 3265 | 5097 | phzH | 0/0 | 100 | 100 | NP_248741 | (phzH) phenazine-modifying enzyme [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| NODE_501 length_3220 cov_268.846643 | 1816 | 2820 | phzM | 0/0 | 100 | 100 | NP_252898 | (phzM) phenazine-specific methyltransferase PhzM (adenosylmethionine dependent methyltransferase) [Pyocyanin (VF0100)] [Pseudomonas aeruginosa PAO1] |
| NODE_449 length_3848 cov_81.599841 | 1174 | 2382 | phzS | 0/0 | 100 | 100 | NP_252907 | (phzS) flavin dependent hydroxylase PhzS [Pyocyanin (VF0100)] [Pseudomonas aeruginosa PAO1] |
| NODE_42 length_23440 cov_240.321748 | 14024 | 14449 | pilE | 0/0 | 100 | 100 | NP_253246 | (pilE) type 4 fimbrial biogenesis protein PilE [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_43 length_23328 cov_232.389532 | 21895 | 22653 | pilF | 0/0 | 100 | 100 | NP_252494 | (pilF) type 4 fimbrial biogenesis protein PilF [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_221 length_8455 cov_205.257221 | 7061 | 7468 | pilG | 0/0 | 100 | 100 | NP_249099 | (pilG) twitching motility protein PilG [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_221 length_8455 cov_205.257221 | 6649 | 7014 | pilH | 0/0 | 100 | 100 | NP_249100 | (pilH) twitching motility protein PilH [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_221 length_8455 cov_205.257221 | 6062 | 6598 | pilI | 0/0 | 100 | 100 | NP_249101 | (pilI) twitching motility protein PilI [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_221 length_8455 cov_205.257221 | 3929 | 5977 | pilJ | 0/0 | 100 | 100 | NP_249102 | (pilJ) twitching motility protein PilJ [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_221 length_8455 cov_205.257221 | 2993 | 3868 | pilK | 0/0 | 100 | 100 | NP_249103 | (pilK) methyltransferase PilK [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_65 length_19179 cov_227.227201 | 6661 | 7725 | pilM | 0/0 | 100 | 100 | NP_253731 | (pilM) type IV pilus inner membrane platform protein PilM [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_65 length_19179 cov_227.227201 | 6065 | 6661 | pilN | 0/0 | 100 | 100 | NP_253730 | (pilN) type IV pilus inner membrane platform protein PilN [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_65 length_19179 cov_227.227201 | 5445 | 6068 | pilO | 0/0 | 100 | 100 | NP_253729 | (pilO) type IV pilus inner membrane platform protein PilO [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_65 length_19179 cov_227.227201 | 4924 | 5448 | pilP | 0/0 | 100 | 100 | NP_253728 | (pilP) type IV pilus biogenesis protein PilP [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_65 length_19179 cov_227.227201 | 2726 | 4870 | pilQ | 0/0 | 100 | 97 | NP_253727 | (pilQ) type 4 fimbrial biogenesis protein PilQ [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_42 length_23440 cov_240.321748 | 4489 | 5826 | pilR | 0/0 | 100 | 100 | NP_253237 | (pilR) two-component response regulator PilR [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_42 length_23440 cov_240.321748 | 2882 | 4474 | pilS | 0/0 | 100 | 100 | NP_253236 | (pilS) two-component sensor PilS [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_205 length_8869 cov_192.429595 | 1022 | 2056 | pilT | 0/0 | 100 | 100 | NP_249086 | (pilT) twitching motility protein PilT [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_205 length_8869 cov_192.429595 | 2234 | 3382 | pilU | 0/0 | 100 | 100 | NP_249087 | (pilU) twitching motility protein PilU [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_42 length_23440 cov_240.321748 | 8213 | 8770 | pilV | 0/0 | 100 | 100 | NP_253241 | (pilV) type IV pilus biogenesis protein PilV [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_42 length_23440 cov_240.321748 | 8767 | 9591 | pilW | 0/0 | 100 | 100 | NP_253242 | (pilW) type IV fimbrial biogenesis protein PilW [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_42 length_23440 cov_240.321748 | 9588 | 10175 | pilX | 0/0 | 100 | 100 | NP_253243 | (pilX) type 4 fimbrial biogenesis protein PilX [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_42 length_23440 cov_240.321748 | 10187 | 13678 | pilY1 | 10/30 | 100 | 92 | NP_253244 | (pilY1) type 4 fimbrial biogenesis protein PilY1 [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_42 length_23440 cov_240.321748 | 13680 | 14027 | pilY2 | 0/0 | 100 | 100 | NP_253245 | (pilY2) type 4 fimbrial biogenesis protein PilY2 [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_64 length_19329 cov_175.239663 | 8188 | 10380 | plcH | 0/0 | 100 | 100 | NP_249535 | (plcH) hemolytic phospholipase C precursor [PLC (VF0092)] [Pseudomonas aeruginosa PAO1] |
| NODE_549 length_2650 cov_162.980567 | 719 | 1606 | popD | 0/0 | 100 | 100 | NP_250400 | (popD) type III secretion system hydrophobic translocator pore protein PopD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_562 length_2510 cov_83.600493 | 573 | 1439 | popN | 0/0 | 100 | 99 | NP_250389 | (popN) type III secretion system outer membrane protein PopN [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_673 length_1729 cov_138.590194 | 831 | 1559 | pppA | 0/0 | 100 | 100 | NP_248765 | (pppA) Pseudomonas protein phosphatase PppA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_605 length_2210 cov_124.104079 | 23 | 1825 | pscC | 0/0 | 100 | 99 | NP_250407 | (pscC) type III secretion system secretin PscC [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_663 length_1823 cov_106.879725 | 733 | 936 | pscE | 0/0 | 100 | 99 | NP_250409 | (pscE) type III secretion system cochaperone PscE for PscG [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_663 length_1823 cov_106.879725 | 473 | 730 | pscF | 0/0 | 100 | 100 | NP_250410 | (pscF) type III secretion system needle filament protein PscF [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_663 length_1823 cov_106.879725 | 123 | 470 | pscG | 0/0 | 100 | 99 | NP_250411 | (pscG) type III secretion system chaperone PscG for PscF [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_145437 cov_171.554430 | 317 | 655 | pscI | 0/0 | 100 | 100 | NP_250413 | (pscI) type III secretion system inner rod protein PscI [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_145437 cov_171.554430 | 652 | 1398 | pscJ | 0/0 | 100 | 99 | NP_250414 | (pscJ) type III secretion system inner MS ring protein [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_145437 cov_171.554430 | 1407 | 2027 | pscK | 1/6 | 99 | 98 | NP_250415 | (pscK) type III secretion system protein PscK [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_145437 cov_171.554430 | 2006 | 2650 | pscL | 0/0 | 100 | 100 | NP_250416 | (pscL) type III secretion systemt protein PscL [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_657 length_1846 cov_83.674392 | 260 | 736 | pscO | 0/0 | 100 | 99 | NP_250387 | (pscO) type III secretion system protein PscO [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_119 length_13089 cov_166.928143 | 11958 | 12611 | pscR | 0/0 | 100 | 99 | NP_250384 | (pscR) type III secretion system protein PscR [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_119 length_13089 cov_166.928143 | 11689 | 11955 | pscS | 0/0 | 100 | 100 | NP_250383 | (pscS) type III secretion system protein PscS [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_119 length_13089 cov_166.928143 | 10904 | 11692 | pscT | 0/0 | 100 | 99 | NP_250382 | (pscT) type III secretion system protein PscT [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_119 length_13089 cov_166.928143 | 9858 | 10907 | pscU | 0/0 | 100 | 99 | NP_250381 | (pscU) type III secretion system protein PscU [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_526 length_2935 cov_134.947516 | 406 | 1344 | ptxR | 0/0 | 100 | 100 | NP_250948 | (ptxR) transcriptional regulator PtxR [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_623 length_2081 cov_111.746008 | 207 | 1193 | pvcA | 0/0 | 100 | 99 | NP_250944 | (pvcA) paerucumarin biosynthesis protein PvcA [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_623 length_2081 cov_111.746008 | 1211 | 2081 | pvcB | 0/0 | 99 | 100 | NP_250945 | (pvcB) paerucumarin biosynthesis protein PvcB [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_688 length_1626 cov_91.281472 | 48 | 1550 | pvcC | 0/0 | 100 | 99 | NP_250946 | (pvcC) paerucumarin biosynthesis protein PvcC [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_267 length_7142 cov_140.788110 | 672 | 2003 | pvdA | 0/0 | 100 | 100 | NP_251076 | (pvdA) L-ornithine N5-oxygenase PvdA [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1] |
| NODE_68 length_18846 cov_213.740103 | 11338 | 12158 | pvdF | 0/0 | 99 | 90 | NP_251086 | (pvdF) pyoverdine synthetase F [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_253 length_7498 cov_151.050532 | 4670 | 5434 | pvdG | 0/0 | 100 | 99 | NP_251115 | (pvdG) pyoverdine biosynthesis protein PvdG [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_168 length_10450 cov_125.523667 | 4226 | 5635 | pvdH | 0/0 | 100 | 99 | NP_251103 | (pvdH) diaminobutyrate-2-oxoglutarate aminotransferase PvdH [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_68 length_18846 cov_213.740103 | 13109 | 14386 | pvdN | 4/8 | 99 | 91 | NP_251084 | (pvdN) pyoverdine biosynthesis protein PvdN [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_68 length_18846 cov_213.740103 | 12226 | 13080 | pvdO | 0/0 | 100 | 96 | NP_251085 | (pvdO) pyoverdine biosynthesis protein PvdO [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_253 length_7498 cov_151.050532 | 3463 | 4026 | pvdS | 0/0 | 100 | 100 | NP_251116 | (pvdS) extracytoplasmic-function sigma-70 factor [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1] |
| NODE_52 length_22144 cov_173.670096 | 12628 | 13515 | rhlA | 0/0 | 100 | 99 | NP_252169 | (rhlA) rhamnosyltransferase chain A [Rhamnolipid (VF0089)] [Pseudomonas aeruginosa PAO1] |
| NODE_52 length_22144 cov_173.670096 | 11282 | 12562 | rhlB | 0/0 | 100 | 100 | NP_252168 | (rhlB) rhamnosyltransferase chain B [Rhamnolipid (VF0089)] [Pseudomonas aeruginosa PAO1] |
| NODE_809 length_1064 cov_67.891591 | 176 | 1064 | rhlC | 0/0 | 91 | 100 | NP_249821 | (rhlC) rhamnosyltransferase 2 [Rhamnolipid biosynthesis (CVF524)] [Pseudomonas aeruginosa PAO1] |
| NODE_52 length_22144 cov_173.670096 | 9646 | 10251 | rhlI | 0/0 | 100 | 99 | NP_252166 | (rhlI) autoinducer synthesis protein RhlL [Quorum sensing (VF0093)] [Pseudomonas aeruginosa PAO1] |
| NODE_195 length_9206 cov_190.820024 | 5764 | 6678 | tagQ | 0/0 | 100 | 100 | NP_248760 | (tagQ) type VI secretiona ssociated protein TagQ outer membrane lipoprotein [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| NODE_195 length_9206 cov_190.820024 | 6740 | 8452 | tagR | 0/0 | 100 | 100 | NP_248761 | (tagR) type IV secretion associated protein TagR positively regulates PpkA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_145437 cov_171.554430 | 140396 | 140860 | tse1 | 0/0 | 100 | 100 | NP_250535 | (tse1) type VI secretion system effector Tse1 peptidoglycanhydrolase [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| NODE_170 length_10203 cov_150.730595 | 8785 | 9261 | tse2 | 0/0 | 100 | 100 | NP_251392 | (tse2) type VI secretion system effector Tse2 [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| NODE_52 length_22144 cov_173.670096 | 18785 | 20011 | tse3 | 0/0 | 100 | 100 | NP_252174 | (tse3) type VI secretion system effector Tse3 glycoside hydrolase [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| NODE_413 length_4205 cov_240.952035 | 1081 | 3012 | vgrG1a | 0/0 | 100 | 100 | NP_248781 | (vgrG1a) type VI secretion system substrate VgrG1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_284 length_6732 cov_183.500075 | 1317 | 3542 | vgrG1b | 0/0 | 100 | 99 | NP_248785 | (vgrG1b) type VI secretion system substrate VgrG1b [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| NODE_648 length_1913 cov_46.089869 | 668 | 1913 | waaA | 0/0 | 98 | 100 | NP_253675 | (waaA) lipopolysaccharide core biosynthesis protein WaaP [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| NODE_190 length_9440 cov_196.628645 | 675 | 1712 | waaF | 0/0 | 100 | 100 | NP_253699 | (waaF) heptosyltransferase I [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| NODE_224 length_8422 cov_136.943799 | 388 | 1509 | waaG | 0/0 | 100 | 100 | NP_253697 | (waaG) B-band O-antigen polymerase [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| NODE_224 length_8422 cov_136.943799 | 1506 | 2312 | waaP | 0/0 | 100 | 100 | NP_253696 | (waaP) UDP-glucose:(heptosyl) LPS alpha 13-glucosyltransferase WaaG [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| NODE_9 length_52023 cov_237.797058 | 21469 | 22341 | xcpA/pilD | 0/0 | 100 | 100 | NP_253218 | (xcpA/pilD) type 4 prepilin peptidase PilD [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_279 length_6835 cov_183.200947 | 5731 | 6438 | xcpP | 0/0 | 100 | 100 | NP_251794 | (xcpP) secretion protein XcpP [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_279 length_6835 cov_183.200947 | 3750 | 5726 | xcpQ | 0/0 | 100 | 100 | NP_251795 | (xcpQ) general secretion pathway protein D [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_49 length_22802 cov_167.496458 | 1035 | 1481 | xcpT | 0/0 | 100 | 100 | NP_251791 | (xcpT) general secretion pathway protein G [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_49 length_22802 cov_167.496458 | 1488 | 2006 | xcpU | 0/0 | 100 | 99 | NP_251790 | (xcpU) general secretion pathway protein H [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_49 length_22802 cov_167.496458 | 2003 | 2392 | xcpV | 0/0 | 100 | 99 | NP_251789 | (xcpV) general secretion pathway protein I [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_49 length_22802 cov_167.496458 | 2389 | 3102 | xcpW | 0/0 | 100 | 99 | NP_251788 | (xcpW) general secretion pathway protein J [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_49 length_22802 cov_167.496458 | 3099 | 4100 | xcpX | 0/0 | 100 | 97 | NP_251787 | (xcpX) general secretion pathway protein K [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_49 length_22802 cov_167.496458 | 4097 | 5245 | xcpY | 0/0 | 100 | 99 | NP_251786 | (xcpY) general secretion pathway protein L [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
Sample-02
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| NODE_44 length_36644 cov_168.104575 | 323 | 1492 | alg44 | 0/0 | 100 | 100 | NP_252232 | (alg44) alginate biosynthesis protein Alg8 [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_44 length_36644 cov_168.104575 | 1575 | 3059 | alg8 | 0/0 | 100 | 100 | NP_252231 | (alg8) alginate-c5-mannuronan-epimerase AlgG [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_208 length_7209 cov_144.304262 | 3464 | 4909 | algA | 0/0 | 100 | 100 | NP_252241 | (algA) phosphomannose isomerase / guanosine 5’-diphospho-D-mannose pyrophosphorylase [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_133566 cov_209.735851 | 14330 | 15679 | algB | 0/0 | 100 | 100 | NP_254170 | (algB) two-component response regulator AlgB [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_59 length_29031 cov_178.436589 | 924 | 2315 | algC | 0/0 | 100 | 100 | NP_254009 | (algC) phosphomannomutase AlgC [Alginate biosynthesis (CVF522)] [Pseudomonas aeruginosa PAO1] |
| NODE_44 length_36644 cov_168.104575 | 3200 | 4510 | algD | 0/0 | 100 | 100 | NP_252230 | (algD) GDP-mannose 6-dehydrogenase AlgD [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_188 length_8419 cov_165.901223 | 5812 | 7284 | algE | 0/0 | 100 | 100 | NP_252234 | (algE) alginate biosynthetic protein AlgK precursor [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_208 length_7209 cov_144.304262 | 5106 | 5756 | algF | 0/0 | 100 | 100 | NP_252240 | (algF) alginate o-acetyltransferase AlgF [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_188 length_8419 cov_165.901223 | 4160 | 5791 | algG | 0/0 | 100 | 100 | NP_252235 | (algG) outer membrane protein AlgE [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_208 length_7209 cov_144.304262 | 5829 | 7004 | algJ | 0/0 | 100 | 100 | NP_252239 | (algJ) alginate o-acetyltransferase AlgJ [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_188 length_8419 cov_165.901223 | 1616 | 2719 | algL | 0/0 | 100 | 100 | NP_252237 | (algL) poly(beta-d-mannuronate) lyase precursor AlgL [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_99 length_17715 cov_187.046491 | 1633 | 2115 | algQ | 0/0 | 100 | 100 | NP_253942 | (algQ) Alginate regulatory protein AlgQ [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_99 length_17715 cov_187.046491 | 7260 | 8006 | algR | 0/0 | 100 | 100 | NP_253948 | (algR) alginate biosynthesis regulatory protein AlgR [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_9 length_86478 cov_147.730420 | 60512 | 61093 | algU | 0/0 | 100 | 100 | NP_249453 | (algU) alginate biosynthesis protein AlgZ/FimS [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_7 length_127946 cov_174.807256 | 96382 | 97549 | algW | 0/0 | 100 | 100 | NP_253136 | (algW) AlgW protein [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| NODE_188 length_8419 cov_165.901223 | 2723 | 4147 | algX | 0/0 | 100 | 100 | NP_252236 | (algX) alginate biosynthesis protein AlgX [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_99 length_17715 cov_187.046491 | 8011 | 9087 | algZ | 0/0 | 100 | 100 | NP_253949 | (algZ) sigma factor AlgU [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_79 length_22465 cov_126.716991 | 15796 | 17235 | aprA | 0/0 | 100 | 100 | NP_249940 | (aprA) alkaline metalloproteinase precursor [Alkaline protease (VF0090)] [Pseudomonas aeruginosa PAO1] |
| NODE_225 length_6006 cov_139.242031 | 3012 | 4043 | chpB | 0/0 | 100 | 100 | NP_249105 | (chpB) probable methylesterase [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_225 length_6006 cov_139.242031 | 2509 | 3015 | chpC | 0/0 | 100 | 99 | NP_249106 | (chpC) probable chemotaxis protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_225 length_6006 cov_139.242031 | 1707 | 2501 | chpD | 0/0 | 100 | 99 | NP_249107 | (chpD) probable transcriptional regulator [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_225 length_6006 cov_139.242031 | 1020 | 1631 | chpE | 0/0 | 100 | 100 | NP_249108 | (chpE) probable chemotaxis protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_84 length_21596 cov_177.578930 | 11563 | 14271 | clpV1 | 0/0 | 100 | 100 | NP_248780 | (clpV1) type VI secretion system AAA+ family ATPase [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_14 length_67422 cov_192.682694 | 20039 | 21400 | exoS | 0/0 | 100 | 100 | NP_252530 | (exoS) type III secretion system effector ExoS ADP ribosyltransferase activity and GTPase-activating protein activity [ExoS (VF0096)] [Pseudomonas aeruginosa PAO1] |
| NODE_130 length_13298 cov_205.502383 | 4181 | 5554 | exoT | 0/0 | 100 | 99 | NP_248734 | (exoT) type III secretion system effector ExoT ADP ribosyltransferase activity and GTPase-activating protein activity [ExoT (VF0097)] [Pseudomonas aeruginosa PAO1] |
| NODE_34 length_44308 cov_146.808008 | 24121 | 25257 | exoY | 0/0 | 100 | 100 | NP_250881 | (exoY) type III secretion system effector ExoY adenylate cyclase [ExoY (VF0099)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_77007 cov_142.904433 | 1321 | 2157 | exsA | 0/0 | 100 | 99 | NP_250404 | (exsA) type III secretion system regulatory protein ExsA [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_77007 cov_142.904433 | 2455 | 2868 | exsB | 0/0 | 100 | 99 | NP_250403 | (exsB) type III secretion system piolitin ExsB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_77007 cov_142.904433 | 3131 | 3568 | exsC | 0/0 | 100 | 99 | NP_250401 | (exsC) type III secretion system regulatory protein ExsC [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_77007 cov_142.904433 | 393 | 1223 | exsD | 0/0 | 100 | 99 | NP_250405 | (exsD) type III secretion system regulatory protein ExsD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_77007 cov_142.904433 | 2877 | 3122 | exsE | 0/0 | 100 | 100 | NP_250402 | (exsE) type III secretion system regulatory protein ExsE [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_10 length_86082 cov_178.434614 | 78452 | 78961 | fimT | 0/0 | 100 | 99 | NP_253239 | (fimT) type 4 fimbrial biogenesis protein FimT [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_10 length_86082 cov_178.434614 | 77840 | 78346 | fimU | 0/0 | 100 | 100 | NP_253240 | (fimU) type 4 fimbrial biogenesis protein FimU [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_32 length_45263 cov_147.525694 | 41758 | 42600 | fleN | 0/0 | 100 | 100 | NP_250145 | (fleN) flagellar synthesis regulator FleN [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_8 length_110146 cov_157.886553 | 52303 | 53775 | fleQ | 0/0 | 100 | 99 | NP_249788 | (fleQ) transcriptional regulator FleQ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_8 length_110146 cov_157.886553 | 49555 | 50976 | fleR | 0/0 | 100 | 100 | NP_249790 | (fleR) two-component response regulator [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_8 length_110146 cov_157.886553 | 50981 | 52189 | fleS | 0/0 | 100 | 99 | NP_249789 | (fleS) two-component sensor [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_85 length_21588 cov_158.490633 | 11420 | 12118 | flgA | 0/0 | 100 | 100 | NP_252040 | (flgA) flagellar basal body P-ring biosynthesis protein FlgA [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_8 length_110146 cov_157.886553 | 85614 | 86021 | flgB | 0/0 | 100 | 100 | NP_249768 | (flgB) flagellar basal body rod protein FlgB [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_8 length_110146 cov_157.886553 | 85168 | 85608 | flgC | 0/0 | 100 | 100 | NP_249769 | (flgC) flagellar basal-body rod protein FlgC [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_8 length_110146 cov_157.886553 | 84442 | 85155 | flgD | 0/0 | 100 | 100 | NP_249770 | (flgD) flagellar basal-body rod modification protein FlgD [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_8 length_110146 cov_157.886553 | 83026 | 84414 | flgE | 0/0 | 100 | 100 | NP_249771 | (flgE) flagellar hook protein FlgE [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_8 length_110146 cov_157.886553 | 82059 | 82808 | flgF | 0/0 | 100 | 100 | NP_249772 | (flgF) flagellar basal-body rod protein FlgF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_8 length_110146 cov_157.886553 | 81227 | 82012 | flgG | 0/0 | 100 | 100 | NP_249773 | (flgG) flagellar basal-body rod protein FlgG [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_8 length_110146 cov_157.886553 | 80486 | 81181 | flgH | 0/0 | 100 | 100 | NP_249774 | (flgH) flagellar L-ring protein precursor FlgH [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_8 length_110146 cov_157.886553 | 79365 | 80474 | flgI | 0/0 | 100 | 100 | NP_249775 | (flgI) flagellar P-ring protein precursor FlgI [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_8 length_110146 cov_157.886553 | 78152 | 79354 | flgJ | 0/0 | 100 | 100 | NP_249776 | (flgJ) flagellar rod assembly protein/muramidase FlgJ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_85 length_21588 cov_158.490633 | 12263 | 12586 | flgM | 0/0 | 100 | 100 | NP_252041 | (flgM) negative regulator of flagellin synthesis [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_85 length_21588 cov_158.490633 | 12641 | 13111 | flgN | 0/0 | 100 | 100 | NP_252042 | (flgN) flagella synthesis protein FlgN [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_32 length_45263 cov_147.525694 | 38123 | 40246 | flhA | 0/0 | 100 | 100 | NP_250143 | (flhA) flagellar biosynthesis protein FlhA [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_32 length_45263 cov_147.525694 | 34140 | 35276 | flhB | 0/0 | 100 | 100 | NP_250140 | (flhB) flagellar biosynthetic protein FlhB [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_32 length_45263 cov_147.525694 | 40330 | 41619 | flhF | 0/0 | 100 | 100 | NP_250144 | (flhF) flagellar biosynthesis protein FlhF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_32 length_45263 cov_147.525694 | 42597 | 43340 | fliA | 0/0 | 100 | 100 | NP_250146 | (fliA) flagellar biosynthesis sigma factor FliA [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_8 length_110146 cov_157.886553 | 48979 | 49308 | fliE | 0/0 | 100 | 99 | NP_249791 | (fliE) flagellar hook-basal body complex protein FliE [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_8 length_110146 cov_157.886553 | 47160 | 48956 | fliF | 0/0 | 100 | 100 | NP_249792 | (fliF) flagellar M-ring protein FliF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_8 length_110146 cov_157.886553 | 46138 | 47154 | fliG | 0/0 | 100 | 99 | NP_249793 | (fliG) flagellar motor switch protein G [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_8 length_110146 cov_157.886553 | 45330 | 46136 | fliH | 0/0 | 100 | 100 | NP_249794 | (fliH) flagellar assembly protein H [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_8 length_110146 cov_157.886553 | 43985 | 45340 | fliI | 0/0 | 100 | 99 | NP_249795 | (fliI) flagellum-specific ATP synthase FliI [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_8 length_110146 cov_157.886553 | 43528 | 43971 | fliJ | 0/0 | 100 | 100 | NP_249796 | (fliJ) flagellar protein FliJ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_32 length_45263 cov_147.525694 | 28301 | 29584 | fliK | 0/0 | 100 | 100 | NP_250132 | (fliK) flagellar hook-length control protein FliK [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_32 length_45263 cov_147.525694 | 29828 | 30349 | fliL | 0/0 | 100 | 100 | NP_250133 | (fliL) flagellar basal body protein FliL [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_32 length_45263 cov_147.525694 | 30357 | 31328 | fliM | 0/0 | 100 | 100 | NP_250134 | (fliM) flagellar motor switch protein FliM [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_32 length_45263 cov_147.525694 | 31356 | 31829 | fliN | 0/0 | 100 | 100 | NP_250135 | (fliN) flagellar motor switch protein FliN [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_32 length_45263 cov_147.525694 | 31831 | 32283 | fliO | 0/0 | 100 | 100 | NP_250136 | (fliO) flagellar protein FliO [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_32 length_45263 cov_147.525694 | 32280 | 33047 | fliP | 0/0 | 100 | 100 | NP_250137 | (fliP) flagellar biosynthetic protein FliP [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_32 length_45263 cov_147.525694 | 33092 | 33361 | fliQ | 0/0 | 100 | 100 | NP_250138 | (fliQ) flagellar biosynthetic protein FliQ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_32 length_45263 cov_147.525694 | 33361 | 34137 | fliR | 0/0 | 100 | 99 | NP_250139 | (fliR) flagellar biosynthetic protein FliR [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_263 length_4106 cov_129.640606 | 391 | 2553 | fptA | 0/0 | 100 | 100 | NP_252911 | (fptA) Fe(III)-pyochelin receptor precursor [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_75 length_23762 cov_177.635001 | 19742 | 22189 | fpvA | 0/0 | 100 | 100 | NP_251088 | (fpvA) ferripyoverdine receptor FpvA [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1] |
| NODE_84 length_21596 cov_177.578930 | 18654 | 19142 | hcp1 | 0/0 | 100 | 100 | NP_248775 | (hcp1) type VI secretion system substrate Hcp1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_84 length_21596 cov_177.578930 | 20727 | 21245 | hsiB1/vipA | 0/0 | 100 | 100 | NP_248773 | (hsiB1/vipA) type VI secretion system tubule-forming protein VipA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_84 length_21596 cov_177.578930 | 19218 | 20714 | hsiC1/vipB | 0/0 | 100 | 100 | NP_248774 | (hsiC1/vipB) type VI secretion system tubule-forming protein VipB [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_84 length_21596 cov_177.578930 | 17641 | 18486 | hsiE1 | 0/0 | 100 | 100 | NP_248776 | (hsiE1) type VI secretion system hcp secretion island protein HsiE1 interacting with HsiB1 to form a novel subcomplex of the T6SS [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_84 length_21596 cov_177.578930 | 17130 | 17639 | hsiF1 | 0/0 | 100 | 100 | NP_248777 | (hsiF1) type VI secretion system hcp secretion island protein HsiF1 a gp25-like protein but not exhibit lysozyme activity [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_84 length_21596 cov_177.578930 | 15274 | 17133 | hsiG1 | 0/0 | 100 | 100 | NP_248778 | (hsiG1) type VI secretion system hcp secretion island protein HsiG1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_84 length_21596 cov_177.578930 | 14264 | 15310 | hsiH1 | 0/0 | 100 | 100 | NP_248779 | (hsiH1) type VI secretion system hcp secretion island protein HsiH1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_307 length_2601 cov_121.143423 | 1138 | 2472 | hsiJ1 | 0/0 | 100 | 100 | NP_248769 | (hsiJ1) type VI secretion system hcp secretion island protein HsiJ1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_211 length_6972 cov_137.291806 | 1397 | 4702 | icmF1/tssM1 | 0/0 | 100 | 99 | NP_248767 | (icmF1/tssM1) type VI secretion system protein IcmF1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_242 length_5249 cov_116.406419 | 77 | 1333 | lasA | 0/0 | 100 | 99 | NP_250562 | (lasA) LasA protease precursor [LasA (VF0088)] [Pseudomonas aeruginosa PAO1] |
| NODE_74 length_23900 cov_177.187214 | 21157 | 22653 | lasB | 0/0 | 100 | 100 | NP_252413 | (lasB) elastase LasB [LasB (VF0087)] [Pseudomonas aeruginosa PAO1] |
| NODE_32 length_45263 cov_147.525694 | 17059 | 17664 | lasI | 0/0 | 100 | 100 | NP_250123 | (lasI) autoinducer synthesis protein LasI [Quorum sensing (VF0093)] [Pseudomonas aeruginosa PAO1] |
| NODE_307 length_2601 cov_121.143423 | 658 | 1122 | lip1 | 0/0 | 100 | 100 | NP_248770 | (lip1) lipoprotein [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_63 length_27007 cov_169.687375 | 1539 | 1757 | mbtH-like | 0/0 | 100 | 100 | NP_251102 | (mbtH-like) MbtH-like protein from the pyoverdine cluster [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_49 length_33242 cov_162.815076 | 28278 | 29129 | motA | 0/0 | 100 | 100 | NP_253641 | (motA) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_49 length_33242 cov_162.815076 | 29149 | 30192 | motB | 0/0 | 100 | 100 | NP_253640 | (motB) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_229 length_5873 cov_141.404934 | 2197 | 2937 | motC | 0/0 | 100 | 100 | NP_250151 | (motC) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_229 length_5873 cov_141.404934 | 1294 | 2184 | motD | 0/0 | 100 | 99 | NP_250152 | (motD) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_44 length_36644 cov_168.104575 | 20376 | 21341 | motY | 0/0 | 100 | 100 | NP_252216 | (motY) probable outer membrane protein precursor [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_9 length_86478 cov_147.730420 | 59904 | 60480 | mucA | 1/8 | 99 | 98 | NP_249454 | (mucA) alkaline metalloproteinase precursor [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_9 length_86478 cov_147.730420 | 58945 | 59895 | mucB | 0/0 | 100 | 100 | NP_249455 | (mucB) anti-sigma factor MucA inhibitor of alg gene expression [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_9 length_86478 cov_147.730420 | 58493 | 58948 | mucC | 0/0 | 100 | 100 | NP_249456 | (mucC) negative regulator for alginate biosynthesis MucB [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_9 length_86478 cov_147.730420 | 57029 | 58453 | mucD | 0/0 | 100 | 99 | NP_249457 | (mucD) serine protease MucD precursor [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| NODE_78 length_22919 cov_174.160100 | 3944 | 4213 | mucE | 0/0 | 100 | 100 | NP_252722 | (mucE) small envelope protein MucE [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| NODE_5 length_147739 cov_174.536949 | 87505 | 88857 | mucP | 0/0 | 100 | 100 | NP_252339 | (mucP) metalloprotease protease [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| NODE_60 length_28216 cov_197.212694 | 21928 | 23358 | pchA | 0/0 | 100 | 99 | NP_252921 | (pchA) salicylate biosynthesis isochorismate synthase PchA [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_60 length_28216 cov_197.212694 | 23355 | 23660 | pchB | 0/0 | 100 | 100 | NP_252920 | (pchB) salicylate biosynthesis protein PchB [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_60 length_28216 cov_197.212694 | 23660 | 24415 | pchC | 0/0 | 100 | 99 | NP_252919 | (pchC) pyochelin biosynthetic protein PchC [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_60 length_28216 cov_197.212694 | 24412 | 26055 | pchD | 0/0 | 100 | 99 | NP_252918 | (pchD) pyochelin biosynthesis protein PchD [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_60 length_28216 cov_197.212694 | 26285 | 27175 | pchR | 0/0 | 100 | 99 | NP_252917 | (pchR) transcriptional regulator PchR [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_77007 cov_142.904433 | 11081 | 11359 | pcr1 | 0/0 | 100 | 100 | NP_250390 | (pcr1) type III secretion system protein Pcr1 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_77007 cov_142.904433 | 10723 | 11094 | pcr2 | 0/0 | 100 | 99 | NP_250391 | (pcr2) type III secretion system protein Pcr2 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_77007 cov_142.904433 | 10361 | 10726 | pcr3 | 0/0 | 100 | 100 | NP_250392 | (pcr3) type III secretion system protein Pcr3 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_77007 cov_142.904433 | 10027 | 10356 | pcr4 | 0/0 | 100 | 100 | NP_250393 | (pcr4) type III secretion system protein Pcr4 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_77007 cov_142.904433 | 7910 | 10030 | pcrD | 0/0 | 100 | 100 | NP_250394 | (pcrD) type III secretion system protein PcrD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_77007 cov_142.904433 | 7155 | 7451 | pcrG | 0/0 | 100 | 100 | NP_250396 | (pcrG) type III secretion system cytoplasmic regulator PcrG [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_77007 cov_142.904433 | 5746 | 6252 | pcrH | 1/3 | 100 | 99 | NP_250398 | (pcrH) type III secretion system regulatory protein PcrH [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_77007 cov_142.904433 | 7479 | 7913 | pcrR | 0/0 | 100 | 100 | NP_250395 | (pcrR) type III secretion system regulatory protein PcrR [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_77007 cov_142.904433 | 6261 | 7145 | pcrV | 0/0 | 100 | 100 | NP_250397 | (pcrV) type III secretion system hydrophilic translocator needle tip protein PcrV [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_150 length_11267 cov_169.808400 | 631 | 1119 | phzA1 | 0/0 | 100 | 100 | NP_252899 | (phzA1) phenazine biosynthesis protein PhzA [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| NODE_46 length_35494 cov_146.012706 | 714 | 1156 | phzA1 | 0/0 | 91 | 96 | NP_252899 | (phzA1) phenazine biosynthesis protein PhzA [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| NODE_150 length_11267 cov_169.808400 | 113 | 601 | phzB1 | 0/0 | 100 | 99 | NP_252900 | (phzB1) phenazine biosynthesis protein PhzB [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| NODE_151 length_11117 cov_164.919022 | 7787 | 9619 | phzH | 0/0 | 100 | 100 | NP_248741 | (phzH) phenazine-modifying enzyme [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| NODE_150 length_11267 cov_169.808400 | 1816 | 2820 | phzM | 0/0 | 100 | 100 | NP_252898 | (phzM) phenazine-specific methyltransferase PhzM (adenosylmethionine dependent methyltransferase) [Pyocyanin (VF0100)] [Pseudomonas aeruginosa PAO1] |
| NODE_294 length_3074 cov_129.663664 | 390 | 1598 | phzS | 0/0 | 100 | 99 | NP_252907 | (phzS) flavin dependent hydroxylase PhzS [Pyocyanin (VF0100)] [Pseudomonas aeruginosa PAO1] |
| NODE_10 length_86082 cov_178.434614 | 71613 | 72038 | pilE | 0/0 | 100 | 100 | NP_253246 | (pilE) type 4 fimbrial biogenesis protein PilE [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_13 length_67991 cov_209.986939 | 66556 | 67314 | pilF | 0/0 | 100 | 100 | NP_252494 | (pilF) type 4 fimbrial biogenesis protein PilF [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_152 length_10905 cov_170.966845 | 1002 | 1409 | pilG | 0/0 | 100 | 100 | NP_249099 | (pilG) twitching motility protein PilG [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_152 length_10905 cov_170.966845 | 1456 | 1821 | pilH | 0/0 | 100 | 100 | NP_249100 | (pilH) twitching motility protein PilH [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_152 length_10905 cov_170.966845 | 1872 | 2408 | pilI | 0/0 | 100 | 100 | NP_249101 | (pilI) twitching motility protein PilI [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_152 length_10905 cov_170.966845 | 2493 | 4541 | pilJ | 0/0 | 100 | 100 | NP_249102 | (pilJ) twitching motility protein PilJ [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_152 length_10905 cov_170.966845 | 4602 | 5477 | pilK | 0/0 | 100 | 100 | NP_249103 | (pilK) methyltransferase PilK [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_61 length_28046 cov_183.161035 | 6851 | 7915 | pilM | 0/0 | 100 | 100 | NP_253731 | (pilM) type IV pilus inner membrane platform protein PilM [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_61 length_28046 cov_183.161035 | 6255 | 6851 | pilN | 0/0 | 100 | 100 | NP_253730 | (pilN) type IV pilus inner membrane platform protein PilN [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_61 length_28046 cov_183.161035 | 5635 | 6258 | pilO | 0/0 | 100 | 100 | NP_253729 | (pilO) type IV pilus inner membrane platform protein PilO [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_61 length_28046 cov_183.161035 | 5114 | 5638 | pilP | 0/0 | 100 | 100 | NP_253728 | (pilP) type IV pilus biogenesis protein PilP [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_61 length_28046 cov_183.161035 | 2916 | 5060 | pilQ | 0/0 | 100 | 97 | NP_253727 | (pilQ) type 4 fimbrial biogenesis protein PilQ [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_10 length_86082 cov_178.434614 | 80236 | 81573 | pilR | 0/0 | 100 | 100 | NP_253237 | (pilR) two-component response regulator PilR [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_10 length_86082 cov_178.434614 | 81588 | 83180 | pilS | 0/0 | 100 | 100 | NP_253236 | (pilS) two-component sensor PilS [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_67 length_26579 cov_168.866048 | 6838 | 7872 | pilT | 0/0 | 100 | 100 | NP_249086 | (pilT) twitching motility protein PilT [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_67 length_26579 cov_168.866048 | 5512 | 6660 | pilU | 0/0 | 100 | 100 | NP_249087 | (pilU) twitching motility protein PilU [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_10 length_86082 cov_178.434614 | 77292 | 77849 | pilV | 0/0 | 100 | 100 | NP_253241 | (pilV) type IV pilus biogenesis protein PilV [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_10 length_86082 cov_178.434614 | 76471 | 77295 | pilW | 0/0 | 100 | 100 | NP_253242 | (pilW) type IV fimbrial biogenesis protein PilW [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_10 length_86082 cov_178.434614 | 75887 | 76474 | pilX | 0/0 | 100 | 100 | NP_253243 | (pilX) type 4 fimbrial biogenesis protein PilX [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_10 length_86082 cov_178.434614 | 72384 | 75875 | pilY1 | 10/30 | 100 | 92 | NP_253244 | (pilY1) type 4 fimbrial biogenesis protein PilY1 [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_10 length_86082 cov_178.434614 | 72035 | 72382 | pilY2 | 0/0 | 100 | 100 | NP_253245 | (pilY2) type 4 fimbrial biogenesis protein PilY2 [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_199474 cov_175.296389 | 171952 | 174144 | plcH | 0/0 | 100 | 100 | NP_249535 | (plcH) hemolytic phospholipase C precursor [PLC (VF0092)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_77007 cov_142.904433 | 4593 | 5765 | popB | 0/0 | 100 | 100 | NP_250399 | (popB) type III secretion system hydrophobic translocator pore protein PopB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_77007 cov_142.904433 | 3694 | 4581 | popD | 0/0 | 100 | 100 | NP_250400 | (popD) type III secretion system hydrophobic translocator pore protein PopD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_77007 cov_142.904433 | 11340 | 12206 | popN | 0/0 | 100 | 99 | NP_250389 | (popN) type III secretion system outer membrane protein PopN [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_211 length_6972 cov_137.291806 | 5389 | 6117 | pppA | 0/0 | 100 | 100 | NP_248765 | (pppA) Pseudomonas protein phosphatase PppA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_3 length_169343 cov_159.364385 | 47 | 1849 | pscC | 0/0 | 100 | 99 | NP_250407 | (pscC) type III secretion system secretin PscC [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_3 length_169343 cov_159.364385 | 1851 | 3149 | pscD | 0/0 | 100 | 99 | NP_250408 | (pscD) type III secretion system basal body protein PscD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_3 length_169343 cov_159.364385 | 3112 | 3315 | pscE | 0/0 | 100 | 97 | NP_250409 | (pscE) type III secretion system cochaperone PscE for PscG [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_3 length_169343 cov_159.364385 | 3318 | 3575 | pscF | 0/0 | 100 | 100 | NP_250410 | (pscF) type III secretion system needle filament protein PscF [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_3 length_169343 cov_159.364385 | 3578 | 3925 | pscG | 0/0 | 100 | 99 | NP_250411 | (pscG) type III secretion system chaperone PscG for PscF [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_3 length_169343 cov_159.364385 | 3922 | 4353 | pscH | 0/0 | 100 | 100 | NP_250412 | (pscH) type III secretion system protein PscH [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_3 length_169343 cov_159.364385 | 4353 | 4691 | pscI | 0/0 | 100 | 99 | NP_250413 | (pscI) type III secretion system inner rod protein PscI [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_3 length_169343 cov_159.364385 | 4688 | 5434 | pscJ | 0/0 | 100 | 99 | NP_250414 | (pscJ) type III secretion system inner MS ring protein [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_3 length_169343 cov_159.364385 | 5443 | 6063 | pscK | 1/6 | 99 | 98 | NP_250415 | (pscK) type III secretion system protein PscK [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_3 length_169343 cov_159.364385 | 6042 | 6686 | pscL | 0/0 | 100 | 99 | NP_250416 | (pscL) type III secretion systemt protein PscL [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_77007 cov_142.904433 | 12397 | 13719 | pscN | 0/0 | 100 | 99 | NP_250388 | (pscN) type III secretion system ATPase PscN [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_77007 cov_142.904433 | 13716 | 14192 | pscO | 0/0 | 100 | 100 | NP_250387 | (pscO) type III secretion system protein PscO [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_77007 cov_142.904433 | 14180 | 15286 | pscP | 2/21 | 99 | 97 | NP_250386 | (pscP) type III secretion system protein PscP [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_77007 cov_142.904433 | 15283 | 16212 | pscQ | 0/0 | 100 | 99 | NP_250385 | (pscQ) type III secretion system protein PscQ [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_77007 cov_142.904433 | 16209 | 16862 | pscR | 0/0 | 100 | 100 | NP_250384 | (pscR) type III secretion system protein PscR [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_77007 cov_142.904433 | 16865 | 17131 | pscS | 0/0 | 100 | 100 | NP_250383 | (pscS) type III secretion system protein PscS [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_77007 cov_142.904433 | 17128 | 17916 | pscT | 0/0 | 100 | 99 | NP_250382 | (pscT) type III secretion system protein PscT [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_77007 cov_142.904433 | 17913 | 18962 | pscU | 0/0 | 100 | 99 | NP_250381 | (pscU) type III secretion system protein PscU [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_66 length_26778 cov_136.616007 | 453 | 1391 | ptxR | 0/0 | 100 | 100 | NP_250948 | (ptxR) transcriptional regulator PtxR [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_321 length_2092 cov_119.328536 | 211 | 1197 | pvcA | 0/0 | 100 | 99 | NP_250944 | (pvcA) paerucumarin biosynthesis protein PvcA [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_321 length_2092 cov_119.328536 | 1215 | 2090 | pvcB | 0/0 | 100 | 100 | NP_250945 | (pvcB) paerucumarin biosynthesis protein PvcB [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_340 length_1635 cov_107.688703 | 86 | 1588 | pvcC | 0/0 | 100 | 100 | NP_250946 | (pvcC) paerucumarin biosynthesis protein PvcC [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_75 length_23762 cov_177.635001 | 3483 | 4814 | pvdA | 0/0 | 100 | 99 | NP_251076 | (pvdA) L-ornithine N5-oxygenase PvdA [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1] |
| NODE_75 length_23762 cov_177.635001 | 17990 | 19639 | pvdE | 0/0 | 100 | 100 | NP_251087 | (pvdE) pyoverdine biosynthesis protein PvdE [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1] |
| NODE_75 length_23762 cov_177.635001 | 16785 | 17612 | pvdF | 0/0 | 100 | 100 | NP_251086 | (pvdF) pyoverdine synthetase F [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_135 length_12374 cov_154.680654 | 8875 | 9639 | pvdG | 0/0 | 100 | 99 | NP_251115 | (pvdG) pyoverdine biosynthesis protein PvdG [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_63 length_27007 cov_169.687375 | 1835 | 3244 | pvdH | 0/0 | 100 | 100 | NP_251103 | (pvdH) diaminobutyrate-2-oxoglutarate aminotransferase PvdH [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_75 length_23762 cov_177.635001 | 13181 | 14527 | pvdM | 0/0 | 100 | 100 | NP_251083 | (pvdM) dipeptidase precursor [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_75 length_23762 cov_177.635001 | 14550 | 15833 | pvdN | 0/0 | 100 | 99 | NP_251084 | (pvdN) pyoverdine biosynthesis protein PvdN [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_75 length_23762 cov_177.635001 | 15862 | 16716 | pvdO | 0/0 | 100 | 98 | NP_251085 | (pvdO) pyoverdine biosynthesis protein PvdO [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_75 length_23762 cov_177.635001 | 11331 | 12965 | pvdP | 0/0 | 100 | 100 | NP_251082 | (pvdP) tyrosinase required for pyoverdine maturation [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_75 length_23762 cov_177.635001 | 1072 | 3360 | pvdQ | 0/0 | 100 | 99 | NP_251075 | (pvdQ) 3-oxo-C12-homoserine lactone acylase PvdQ [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_135 length_12374 cov_154.680654 | 7668 | 8231 | pvdS | 0/0 | 100 | 100 | NP_251116 | (pvdS) extracytoplasmic-function sigma-70 factor [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1] |
| NODE_71 length_24566 cov_170.274817 | 9657 | 10544 | rhlA | 0/0 | 100 | 100 | NP_252169 | (rhlA) rhamnosyltransferase chain A [Rhamnolipid (VF0089)] [Pseudomonas aeruginosa PAO1] |
| NODE_71 length_24566 cov_170.274817 | 10610 | 11890 | rhlB | 0/0 | 100 | 99 | NP_252168 | (rhlB) rhamnosyltransferase chain B [Rhamnolipid (VF0089)] [Pseudomonas aeruginosa PAO1] |
| NODE_8 length_110146 cov_157.886553 | 18295 | 19272 | rhlC | 0/0 | 100 | 100 | NP_249821 | (rhlC) rhamnosyltransferase 2 [Rhamnolipid biosynthesis (CVF524)] [Pseudomonas aeruginosa PAO1] |
| NODE_71 length_24566 cov_170.274817 | 12921 | 13526 | rhlI | 0/0 | 100 | 99 | NP_252166 | (rhlI) autoinducer synthesis protein RhlL [Quorum sensing (VF0093)] [Pseudomonas aeruginosa PAO1] |
| NODE_211 length_6972 cov_137.291806 | 4699 | 5379 | tagF/pppB | 0/0 | 100 | 100 | NP_248766 | (tagF/pppB) Pseudomonas protein phosphatase PppB [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_179 length_9270 cov_178.652018 | 2585 | 3499 | tagQ | 0/0 | 100 | 100 | NP_248760 | (tagQ) type VI secretiona ssociated protein TagQ outer membrane lipoprotein [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| NODE_179 length_9270 cov_178.652018 | 811 | 2523 | tagR | 0/0 | 100 | 100 | NP_248761 | (tagR) type IV secretion associated protein TagR positively regulates PpkA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_3 length_169343 cov_159.364385 | 144556 | 145020 | tse1 | 0/0 | 100 | 100 | NP_250535 | (tse1) type VI secretion system effector Tse1 peptidoglycanhydrolase [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_196288 cov_167.234008 | 169390 | 169866 | tse2 | 0/0 | 100 | 100 | NP_251392 | (tse2) type VI secretion system effector Tse2 [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| NODE_71 length_24566 cov_170.274817 | 3161 | 4387 | tse3 | 0/0 | 100 | 100 | NP_252174 | (tse3) type VI secretion system effector Tse3 glycoside hydrolase [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| NODE_84 length_21596 cov_177.578930 | 9585 | 11516 | vgrG1a | 0/0 | 100 | 99 | NP_248781 | (vgrG1a) type VI secretion system substrate VgrG1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_84 length_21596 cov_177.578930 | 4968 | 7193 | vgrG1b | 0/0 | 100 | 99 | NP_248785 | (vgrG1b) type VI secretion system substrate VgrG1b [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| NODE_159 length_10401 cov_115.912631 | 8443 | 9720 | waaA | 0/0 | 100 | 100 | NP_253675 | (waaA) lipopolysaccharide core biosynthesis protein WaaP [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| NODE_45 length_36189 cov_177.209543 | 26358 | 27425 | waaC | 0/0 | 100 | 100 | NP_253698 | (waaC) 3-deoxy-D-manno-octulosonic-acid (KDO) transferase [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| NODE_45 length_36189 cov_177.209543 | 27422 | 28459 | waaF | 0/0 | 100 | 100 | NP_253699 | (waaF) heptosyltransferase I [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| NODE_45 length_36189 cov_177.209543 | 25240 | 26361 | waaG | 0/0 | 100 | 99 | NP_253697 | (waaG) B-band O-antigen polymerase [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| NODE_45 length_36189 cov_177.209543 | 24437 | 25243 | waaP | 0/0 | 100 | 100 | NP_253696 | (waaP) UDP-glucose:(heptosyl) LPS alpha 13-glucosyltransferase WaaG [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| NODE_12 length_70582 cov_185.171903 | 16807 | 17679 | xcpA/pilD | 0/0 | 100 | 100 | NP_253218 | (xcpA/pilD) type 4 prepilin peptidase PilD [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_117 length_15103 cov_151.588846 | 6735 | 7442 | xcpP | 0/0 | 100 | 100 | NP_251794 | (xcpP) secretion protein XcpP [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_117 length_15103 cov_151.588846 | 4754 | 6730 | xcpQ | 0/0 | 100 | 100 | NP_251795 | (xcpQ) general secretion pathway protein D [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_117 length_15103 cov_151.588846 | 7662 | 9170 | xcpR | 0/0 | 100 | 99 | NP_251793 | (xcpR) general secretion pathway protein E [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_117 length_15103 cov_151.588846 | 9170 | 10387 | xcpS | 0/0 | 100 | 100 | NP_251792 | (xcpS) general secretion pathway protein F [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_117 length_15103 cov_151.588846 | 10392 | 10838 | xcpT | 0/0 | 100 | 100 | NP_251791 | (xcpT) general secretion pathway protein G [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_117 length_15103 cov_151.588846 | 10845 | 11363 | xcpU | 0/0 | 100 | 100 | NP_251790 | (xcpU) general secretion pathway protein H [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_117 length_15103 cov_151.588846 | 11360 | 11749 | xcpV | 0/0 | 100 | 100 | NP_251789 | (xcpV) general secretion pathway protein I [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_117 length_15103 cov_151.588846 | 11746 | 12459 | xcpW | 0/0 | 100 | 100 | NP_251788 | (xcpW) general secretion pathway protein J [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_117 length_15103 cov_151.588846 | 12456 | 13457 | xcpX | 0/0 | 100 | 97 | NP_251787 | (xcpX) general secretion pathway protein K [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_117 length_15103 cov_151.588846 | 13454 | 14602 | xcpY | 0/0 | 100 | 99 | NP_251786 | (xcpY) general secretion pathway protein L [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_117 length_15103 cov_151.588846 | 14604 | 15103 | xcpZ | 0/0 | 95 | 100 | NP_251785 | (xcpZ) general secretion pathway protein M [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
Sample-03
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| NODE_32 length_66634 cov_152.102469 | 40005 | 41174 | alg44 | 0/0 | 100 | 100 | NP_252232 | (alg44) alginate biosynthesis protein Alg8 [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_32 length_66634 cov_152.102469 | 38438 | 39922 | alg8 | 0/0 | 100 | 100 | NP_252231 | (alg8) alginate-c5-mannuronan-epimerase AlgG [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_32 length_66634 cov_152.102469 | 52182 | 53627 | algA | 0/0 | 100 | 100 | NP_252241 | (algA) phosphomannose isomerase / guanosine 5’-diphospho-D-mannose pyrophosphorylase [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_8 length_133594 cov_194.288615 | 117893 | 119242 | algB | 0/0 | 100 | 100 | NP_254170 | (algB) two-component response regulator AlgB [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_20 length_87435 cov_163.926795 | 59130 | 60521 | algC | 0/0 | 100 | 100 | NP_254009 | (algC) phosphomannomutase AlgC [Alginate biosynthesis (CVF522)] [Pseudomonas aeruginosa PAO1] |
| NODE_32 length_66634 cov_152.102469 | 36987 | 38297 | algD | 0/0 | 100 | 100 | NP_252230 | (algD) GDP-mannose 6-dehydrogenase AlgD [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_32 length_66634 cov_152.102469 | 42612 | 44084 | algE | 0/0 | 100 | 100 | NP_252234 | (algE) alginate biosynthetic protein AlgK precursor [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_32 length_66634 cov_152.102469 | 51335 | 51985 | algF | 0/0 | 100 | 100 | NP_252240 | (algF) alginate o-acetyltransferase AlgF [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_32 length_66634 cov_152.102469 | 44105 | 45736 | algG | 0/0 | 100 | 100 | NP_252235 | (algG) outer membrane protein AlgE [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_32 length_66634 cov_152.102469 | 48510 | 50072 | algI | 0/0 | 100 | 100 | NP_252238 | (algI) alginate o-acetyltransferase AlgI [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_32 length_66634 cov_152.102469 | 50087 | 51262 | algJ | 0/0 | 100 | 100 | NP_252239 | (algJ) alginate o-acetyltransferase AlgJ [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_32 length_66634 cov_152.102469 | 41188 | 42615 | algK | 0/0 | 100 | 100 | NP_252233 | (algK) alginate biosynthesis protein Alg44 [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_32 length_66634 cov_152.102469 | 47177 | 48280 | algL | 0/0 | 100 | 100 | NP_252237 | (algL) poly(beta-d-mannuronate) lyase precursor AlgL [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_40 length_59214 cov_166.199570 | 43132 | 43614 | algQ | 0/0 | 100 | 100 | NP_253942 | (algQ) Alginate regulatory protein AlgQ [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_40 length_59214 cov_166.199570 | 48759 | 49505 | algR | 0/0 | 100 | 100 | NP_253948 | (algR) alginate biosynthesis regulatory protein AlgR [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_15 length_101176 cov_136.862699 | 60526 | 61116 | algU | 1/9 | 100 | 98 | NP_249453 | (algU) alginate biosynthesis protein AlgZ/FimS [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_5 length_174794 cov_144.356840 | 30399 | 31566 | algW | 0/0 | 100 | 100 | NP_253136 | (algW) AlgW protein [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| NODE_32 length_66634 cov_152.102469 | 45749 | 47173 | algX | 0/0 | 100 | 100 | NP_252236 | (algX) alginate biosynthesis protein AlgX [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_40 length_59214 cov_166.199570 | 49510 | 50586 | algZ | 0/0 | 100 | 100 | NP_253949 | (algZ) sigma factor AlgU [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_59 length_35818 cov_111.106516 | 18555 | 19994 | aprA | 0/0 | 100 | 100 | NP_249940 | (aprA) alkaline metalloproteinase precursor [Alkaline protease (VF0090)] [Pseudomonas aeruginosa PAO1] |
| NODE_127 length_6030 cov_145.944566 | 3018 | 4049 | chpB | 0/0 | 100 | 100 | NP_249105 | (chpB) probable methylesterase [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_127 length_6030 cov_145.944566 | 2515 | 3021 | chpC | 0/0 | 100 | 99 | NP_249106 | (chpC) probable chemotaxis protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_127 length_6030 cov_145.944566 | 1713 | 2507 | chpD | 0/0 | 100 | 99 | NP_249107 | (chpD) probable transcriptional regulator [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_127 length_6030 cov_145.944566 | 1026 | 1637 | chpE | 0/0 | 100 | 100 | NP_249108 | (chpE) probable chemotaxis protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_70 length_26255 cov_164.489610 | 11944 | 14652 | clpV1 | 0/0 | 100 | 100 | NP_248780 | (clpV1) type VI secretion system AAA+ family ATPase [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_13 length_101760 cov_179.881642 | 20039 | 21400 | exoS | 0/0 | 100 | 100 | NP_252530 | (exoS) type III secretion system effector ExoS ADP ribosyltransferase activity and GTPase-activating protein activity [ExoS (VF0096)] [Pseudomonas aeruginosa PAO1] |
| NODE_56 length_38986 cov_169.335706 | 28141 | 29514 | exoT | 0/0 | 100 | 99 | NP_248734 | (exoT) type III secretion system effector ExoT ADP ribosyltransferase activity and GTPase-activating protein activity [ExoT (VF0097)] [Pseudomonas aeruginosa PAO1] |
| NODE_44 length_56142 cov_143.669027 | 24226 | 25362 | exoY | 0/0 | 100 | 100 | NP_250881 | (exoY) type III secretion system effector ExoY adenylate cyclase [ExoY (VF0099)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_357530 cov_127.632981 | 185989 | 186825 | exsA | 0/0 | 100 | 99 | NP_250404 | (exsA) type III secretion system regulatory protein ExsA [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_357530 cov_127.632981 | 185278 | 185691 | exsB | 0/0 | 100 | 99 | NP_250403 | (exsB) type III secretion system piolitin ExsB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_357530 cov_127.632981 | 184578 | 185015 | exsC | 0/0 | 100 | 99 | NP_250401 | (exsC) type III secretion system regulatory protein ExsC [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_357530 cov_127.632981 | 186923 | 187753 | exsD | 0/0 | 100 | 99 | NP_250405 | (exsD) type III secretion system regulatory protein ExsD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_357530 cov_127.632981 | 185024 | 185269 | exsE | 0/0 | 100 | 100 | NP_250402 | (exsE) type III secretion system regulatory protein ExsE [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_70 length_26255 cov_164.489610 | 1992 | 3479 | fha1 | 1/6 | 100 | 100 | NP_248771 | (fha1) type VI secretion system forkhead-associated protein Fha1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_4 length_177930 cov_154.448393 | 89803 | 90312 | fimT | 0/0 | 100 | 99 | NP_253239 | (fimT) type 4 fimbrial biogenesis protein FimT [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_4 length_177930 cov_154.448393 | 89191 | 89697 | fimU | 0/0 | 100 | 100 | NP_253240 | (fimU) type 4 fimbrial biogenesis protein FimU [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_30 length_70483 cov_161.439110 | 63376 | 66135 | fimV | 0/0 | 100 | 99 | NP_251805 | (fimV) putative Type IV pili related protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_16 length_99895 cov_129.085335 | 57277 | 58119 | fleN | 0/0 | 100 | 100 | NP_250145 | (fleN) flagellar synthesis regulator FleN [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_168075 cov_138.083822 | 91888 | 93360 | fleQ | 0/0 | 100 | 99 | NP_249788 | (fleQ) transcriptional regulator FleQ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_168075 cov_138.083822 | 94687 | 96108 | fleR | 0/0 | 100 | 100 | NP_249790 | (fleR) two-component response regulator [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_168075 cov_138.083822 | 93474 | 94682 | fleS | 0/0 | 100 | 99 | NP_249789 | (fleS) two-component sensor [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_75 length_21347 cov_151.793700 | 11205 | 11903 | flgA | 0/0 | 100 | 100 | NP_252040 | (flgA) flagellar basal body P-ring biosynthesis protein FlgA [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_168075 cov_138.083822 | 59642 | 60049 | flgB | 0/0 | 100 | 100 | NP_249768 | (flgB) flagellar basal body rod protein FlgB [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_168075 cov_138.083822 | 60055 | 60495 | flgC | 0/0 | 100 | 100 | NP_249769 | (flgC) flagellar basal-body rod protein FlgC [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_168075 cov_138.083822 | 60508 | 61221 | flgD | 0/0 | 100 | 100 | NP_249770 | (flgD) flagellar basal-body rod modification protein FlgD [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_168075 cov_138.083822 | 61249 | 62637 | flgE | 0/0 | 100 | 100 | NP_249771 | (flgE) flagellar hook protein FlgE [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_168075 cov_138.083822 | 62855 | 63604 | flgF | 0/0 | 100 | 100 | NP_249772 | (flgF) flagellar basal-body rod protein FlgF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_168075 cov_138.083822 | 63651 | 64436 | flgG | 0/0 | 100 | 100 | NP_249773 | (flgG) flagellar basal-body rod protein FlgG [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_168075 cov_138.083822 | 64482 | 65177 | flgH | 0/0 | 100 | 100 | NP_249774 | (flgH) flagellar L-ring protein precursor FlgH [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_168075 cov_138.083822 | 65189 | 66298 | flgI | 0/0 | 100 | 100 | NP_249775 | (flgI) flagellar P-ring protein precursor FlgI [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_168075 cov_138.083822 | 66309 | 67511 | flgJ | 0/0 | 100 | 100 | NP_249776 | (flgJ) flagellar rod assembly protein/muramidase FlgJ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_75 length_21347 cov_151.793700 | 12048 | 12371 | flgM | 0/0 | 100 | 100 | NP_252041 | (flgM) negative regulator of flagellin synthesis [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_75 length_21347 cov_151.793700 | 12426 | 12896 | flgN | 0/0 | 100 | 100 | NP_252042 | (flgN) flagella synthesis protein FlgN [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_16 length_99895 cov_129.085335 | 59631 | 61754 | flhA | 0/0 | 100 | 100 | NP_250143 | (flhA) flagellar biosynthesis protein FlhA [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_16 length_99895 cov_129.085335 | 64601 | 65737 | flhB | 0/0 | 100 | 100 | NP_250140 | (flhB) flagellar biosynthetic protein FlhB [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_16 length_99895 cov_129.085335 | 58258 | 59547 | flhF | 0/0 | 100 | 100 | NP_250144 | (flhF) flagellar biosynthesis protein FlhF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_16 length_99895 cov_129.085335 | 56537 | 57280 | fliA | 0/0 | 100 | 100 | NP_250146 | (fliA) flagellar biosynthesis sigma factor FliA [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_168075 cov_138.083822 | 96355 | 96684 | fliE | 0/0 | 100 | 99 | NP_249791 | (fliE) flagellar hook-basal body complex protein FliE [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_168075 cov_138.083822 | 96707 | 98503 | fliF | 0/0 | 100 | 100 | NP_249792 | (fliF) flagellar M-ring protein FliF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_168075 cov_138.083822 | 98509 | 99525 | fliG | 0/0 | 100 | 99 | NP_249793 | (fliG) flagellar motor switch protein G [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_168075 cov_138.083822 | 99527 | 100333 | fliH | 0/0 | 100 | 100 | NP_249794 | (fliH) flagellar assembly protein H [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_168075 cov_138.083822 | 100323 | 101678 | fliI | 0/0 | 100 | 99 | NP_249795 | (fliI) flagellum-specific ATP synthase FliI [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_168075 cov_138.083822 | 101692 | 102135 | fliJ | 0/0 | 100 | 100 | NP_249796 | (fliJ) flagellar protein FliJ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_16 length_99895 cov_129.085335 | 70293 | 71576 | fliK | 0/0 | 100 | 100 | NP_250132 | (fliK) flagellar hook-length control protein FliK [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_16 length_99895 cov_129.085335 | 69528 | 70049 | fliL | 0/0 | 100 | 100 | NP_250133 | (fliL) flagellar basal body protein FliL [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_16 length_99895 cov_129.085335 | 68549 | 69520 | fliM | 0/0 | 100 | 100 | NP_250134 | (fliM) flagellar motor switch protein FliM [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_16 length_99895 cov_129.085335 | 68048 | 68521 | fliN | 0/0 | 100 | 100 | NP_250135 | (fliN) flagellar motor switch protein FliN [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_16 length_99895 cov_129.085335 | 67594 | 68046 | fliO | 0/0 | 100 | 100 | NP_250136 | (fliO) flagellar protein FliO [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_16 length_99895 cov_129.085335 | 66830 | 67597 | fliP | 0/0 | 100 | 100 | NP_250137 | (fliP) flagellar biosynthetic protein FliP [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_16 length_99895 cov_129.085335 | 66516 | 66785 | fliQ | 0/0 | 100 | 100 | NP_250138 | (fliQ) flagellar biosynthetic protein FliQ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_16 length_99895 cov_129.085335 | 65740 | 66516 | fliR | 0/0 | 100 | 99 | NP_250139 | (fliR) flagellar biosynthetic protein FliR [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_130 length_5286 cov_133.085045 | 1602 | 3764 | fptA | 0/0 | 100 | 100 | NP_252911 | (fptA) Fe(III)-pyochelin receptor precursor [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_72 length_23815 cov_158.603800 | 1574 | 4021 | fpvA | 0/0 | 100 | 100 | NP_251088 | (fpvA) ferripyoverdine receptor FpvA [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1] |
| NODE_70 length_26255 cov_164.489610 | 7073 | 7561 | hcp1 | 0/0 | 100 | 100 | NP_248775 | (hcp1) type VI secretion system substrate Hcp1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_70 length_26255 cov_164.489610 | 3847 | 4881 | hsiA1 | 0/0 | 100 | 99 | NP_248772 | (hsiA1) type VI secretion system hcp secretion island protein HsiA1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_70 length_26255 cov_164.489610 | 4970 | 5488 | hsiB1/vipA | 0/0 | 100 | 100 | NP_248773 | (hsiB1/vipA) type VI secretion system tubule-forming protein VipA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_70 length_26255 cov_164.489610 | 5501 | 6997 | hsiC1/vipB | 0/0 | 100 | 100 | NP_248774 | (hsiC1/vipB) type VI secretion system tubule-forming protein VipB [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_70 length_26255 cov_164.489610 | 7729 | 8574 | hsiE1 | 0/0 | 100 | 100 | NP_248776 | (hsiE1) type VI secretion system hcp secretion island protein HsiE1 interacting with HsiB1 to form a novel subcomplex of the T6SS [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_70 length_26255 cov_164.489610 | 8576 | 9085 | hsiF1 | 0/0 | 100 | 100 | NP_248777 | (hsiF1) type VI secretion system hcp secretion island protein HsiF1 a gp25-like protein but not exhibit lysozyme activity [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_70 length_26255 cov_164.489610 | 9082 | 10941 | hsiG1 | 0/0 | 100 | 100 | NP_248778 | (hsiG1) type VI secretion system hcp secretion island protein HsiG1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_70 length_26255 cov_164.489610 | 10905 | 11951 | hsiH1 | 0/0 | 100 | 100 | NP_248779 | (hsiH1) type VI secretion system hcp secretion island protein HsiH1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_70 length_26255 cov_164.489610 | 133 | 1467 | hsiJ1 | 0/0 | 100 | 100 | NP_248769 | (hsiJ1) type VI secretion system hcp secretion island protein HsiJ1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_122 length_7056 cov_153.244161 | 1454 | 4759 | icmF1/tssM1 | 0/0 | 100 | 99 | NP_248767 | (icmF1/tssM1) type VI secretion system protein IcmF1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_115 length_8528 cov_118.256183 | 3953 | 5209 | lasA | 0/0 | 100 | 99 | NP_250562 | (lasA) LasA protease precursor [LasA (VF0088)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_243198 cov_166.468787 | 63523 | 65019 | lasB | 0/0 | 100 | 100 | NP_252413 | (lasB) elastase LasB [LasB (VF0087)] [Pseudomonas aeruginosa PAO1] |
| NODE_16 length_99895 cov_129.085335 | 82213 | 82818 | lasI | 0/0 | 100 | 100 | NP_250123 | (lasI) autoinducer synthesis protein LasI [Quorum sensing (VF0093)] [Pseudomonas aeruginosa PAO1] |
| NODE_70 length_26255 cov_164.489610 | 1483 | 1947 | lip1 | 0/0 | 100 | 100 | NP_248770 | (lip1) lipoprotein [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_49 length_47091 cov_146.988961 | 25316 | 25534 | mbtH-like | 0/0 | 100 | 100 | NP_251102 | (mbtH-like) MbtH-like protein from the pyoverdine cluster [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_61 length_33269 cov_153.623162 | 28292 | 29143 | motA | 0/0 | 100 | 100 | NP_253641 | (motA) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_61 length_33269 cov_153.623162 | 29163 | 30206 | motB | 0/0 | 100 | 100 | NP_253640 | (motB) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_16 length_99895 cov_129.085335 | 50802 | 51542 | motC | 0/0 | 100 | 100 | NP_250151 | (motC) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_16 length_99895 cov_129.085335 | 49899 | 50789 | motD | 0/0 | 100 | 99 | NP_250152 | (motD) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_32 length_66634 cov_152.102469 | 20156 | 21121 | motY | 0/0 | 100 | 100 | NP_252216 | (motY) probable outer membrane protein precursor [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_15 length_101176 cov_136.862699 | 59918 | 60494 | mucA | 1/8 | 99 | 98 | NP_249454 | (mucA) alkaline metalloproteinase precursor [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_15 length_101176 cov_136.862699 | 58959 | 59909 | mucB | 0/0 | 100 | 100 | NP_249455 | (mucB) anti-sigma factor MucA inhibitor of alg gene expression [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_15 length_101176 cov_136.862699 | 58507 | 58962 | mucC | 0/0 | 100 | 100 | NP_249456 | (mucC) negative regulator for alginate biosynthesis MucB [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_15 length_101176 cov_136.862699 | 57043 | 58467 | mucD | 0/0 | 100 | 99 | NP_249457 | (mucD) serine protease MucD precursor [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| NODE_73 length_22985 cov_173.812642 | 18744 | 19013 | mucE | 0/0 | 100 | 100 | NP_252722 | (mucE) small envelope protein MucE [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_243198 cov_166.468787 | 145116 | 146468 | mucP | 0/0 | 100 | 100 | NP_252339 | (mucP) metalloprotease protease [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| NODE_65 length_30621 cov_182.628339 | 21928 | 23358 | pchA | 0/0 | 100 | 99 | NP_252921 | (pchA) salicylate biosynthesis isochorismate synthase PchA [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_65 length_30621 cov_182.628339 | 23355 | 23660 | pchB | 0/0 | 100 | 100 | NP_252920 | (pchB) salicylate biosynthesis protein PchB [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_65 length_30621 cov_182.628339 | 23660 | 24415 | pchC | 0/0 | 100 | 99 | NP_252919 | (pchC) pyochelin biosynthetic protein PchC [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_65 length_30621 cov_182.628339 | 24412 | 26055 | pchD | 0/0 | 100 | 99 | NP_252918 | (pchD) pyochelin biosynthesis protein PchD [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_151 length_2830 cov_86.649110 | 894 | 1943 | pchG | 0/0 | 100 | 99 | NP_252914 | (pchG) pyochelin biosynthetic protein PchG [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_65 length_30621 cov_182.628339 | 26285 | 27175 | pchR | 0/0 | 100 | 99 | NP_252917 | (pchR) transcriptional regulator PchR [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_357530 cov_127.632981 | 176787 | 177065 | pcr1 | 0/0 | 100 | 100 | NP_250390 | (pcr1) type III secretion system protein Pcr1 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_357530 cov_127.632981 | 177052 | 177423 | pcr2 | 0/0 | 100 | 99 | NP_250391 | (pcr2) type III secretion system protein Pcr2 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_357530 cov_127.632981 | 177420 | 177785 | pcr3 | 0/0 | 100 | 100 | NP_250392 | (pcr3) type III secretion system protein Pcr3 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_357530 cov_127.632981 | 177790 | 178119 | pcr4 | 0/0 | 100 | 100 | NP_250393 | (pcr4) type III secretion system protein Pcr4 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_357530 cov_127.632981 | 178116 | 180236 | pcrD | 0/0 | 100 | 100 | NP_250394 | (pcrD) type III secretion system protein PcrD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_357530 cov_127.632981 | 180695 | 180991 | pcrG | 0/0 | 100 | 100 | NP_250396 | (pcrG) type III secretion system cytoplasmic regulator PcrG [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_357530 cov_127.632981 | 181894 | 182400 | pcrH | 1/3 | 100 | 99 | NP_250398 | (pcrH) type III secretion system regulatory protein PcrH [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_357530 cov_127.632981 | 180233 | 180667 | pcrR | 0/0 | 100 | 100 | NP_250395 | (pcrR) type III secretion system regulatory protein PcrR [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_357530 cov_127.632981 | 181001 | 181885 | pcrV | 0/0 | 100 | 100 | NP_250397 | (pcrV) type III secretion system hydrophilic translocator needle tip protein PcrV [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_58 length_36583 cov_127.546157 | 34339 | 34781 | phzA1 | 0/0 | 91 | 96 | NP_252899 | (phzA1) phenazine biosynthesis protein PhzA [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| NODE_80 length_19077 cov_156.055842 | 631 | 1119 | phzA1 | 0/0 | 100 | 100 | NP_252899 | (phzA1) phenazine biosynthesis protein PhzA [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| NODE_80 length_19077 cov_156.055842 | 113 | 601 | phzB1 | 0/0 | 100 | 99 | NP_252900 | (phzB1) phenazine biosynthesis protein PhzB [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| NODE_58 length_36583 cov_127.546157 | 35329 | 36546 | phzC1 | 0/0 | 100 | 100 | NP_252901 | (phzC1) phenazine biosynthesis protein PhzC [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| NODE_161 length_1644 cov_203.492661 | 1073 | 1644 | phzD1 | 0/0 | 92 | 99 | NP_252902 | (phzD1) phenazine biosynthesis protein PhzD isochorismatase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| NODE_56 length_38986 cov_169.335706 | 20165 | 21997 | phzH | 0/0 | 100 | 100 | NP_248741 | (phzH) phenazine-modifying enzyme [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| NODE_80 length_19077 cov_156.055842 | 1816 | 2820 | phzM | 0/0 | 100 | 100 | NP_252898 | (phzM) phenazine-specific methyltransferase PhzM (adenosylmethionine dependent methyltransferase) [Pyocyanin (VF0100)] [Pseudomonas aeruginosa PAO1] |
| NODE_150 length_2959 cov_150.621096 | 1511 | 2719 | phzS | 0/0 | 100 | 99 | NP_252907 | (phzS) flavin dependent hydroxylase PhzS [Pyocyanin (VF0100)] [Pseudomonas aeruginosa PAO1] |
| NODE_4 length_177930 cov_154.448393 | 82964 | 83389 | pilE | 0/0 | 100 | 100 | NP_253246 | (pilE) type 4 fimbrial biogenesis protein PilE [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_19 length_92091 cov_178.907351 | 53867 | 54625 | pilF | 0/0 | 100 | 100 | NP_252494 | (pilF) type 4 fimbrial biogenesis protein PilF [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_53 length_41716 cov_165.657052 | 9527 | 9934 | pilG | 0/0 | 100 | 100 | NP_249099 | (pilG) twitching motility protein PilG [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_53 length_41716 cov_165.657052 | 9115 | 9480 | pilH | 0/0 | 100 | 100 | NP_249100 | (pilH) twitching motility protein PilH [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_53 length_41716 cov_165.657052 | 8528 | 9064 | pilI | 0/0 | 100 | 100 | NP_249101 | (pilI) twitching motility protein PilI [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_53 length_41716 cov_165.657052 | 6395 | 8443 | pilJ | 0/0 | 100 | 100 | NP_249102 | (pilJ) twitching motility protein PilJ [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_53 length_41716 cov_165.657052 | 5459 | 6334 | pilK | 0/0 | 100 | 100 | NP_249103 | (pilK) methyltransferase PilK [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_69 length_28063 cov_166.900343 | 6852 | 7916 | pilM | 0/0 | 100 | 100 | NP_253731 | (pilM) type IV pilus inner membrane platform protein PilM [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_69 length_28063 cov_166.900343 | 6256 | 6852 | pilN | 0/0 | 100 | 100 | NP_253730 | (pilN) type IV pilus inner membrane platform protein PilN [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_69 length_28063 cov_166.900343 | 5636 | 6259 | pilO | 0/0 | 100 | 100 | NP_253729 | (pilO) type IV pilus inner membrane platform protein PilO [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_69 length_28063 cov_166.900343 | 5115 | 5639 | pilP | 0/0 | 100 | 100 | NP_253728 | (pilP) type IV pilus biogenesis protein PilP [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_69 length_28063 cov_166.900343 | 2917 | 5061 | pilQ | 0/0 | 100 | 97 | NP_253727 | (pilQ) type 4 fimbrial biogenesis protein PilQ [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_4 length_177930 cov_154.448393 | 91587 | 92924 | pilR | 0/0 | 100 | 100 | NP_253237 | (pilR) two-component response regulator PilR [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_4 length_177930 cov_154.448393 | 92939 | 94531 | pilS | 0/0 | 100 | 100 | NP_253236 | (pilS) two-component sensor PilS [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_53 length_41716 cov_165.657052 | 21968 | 23002 | pilT | 0/0 | 100 | 100 | NP_249086 | (pilT) twitching motility protein PilT [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_53 length_41716 cov_165.657052 | 20642 | 21790 | pilU | 0/0 | 100 | 100 | NP_249087 | (pilU) twitching motility protein PilU [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_4 length_177930 cov_154.448393 | 88643 | 89200 | pilV | 0/0 | 100 | 100 | NP_253241 | (pilV) type IV pilus biogenesis protein PilV [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_4 length_177930 cov_154.448393 | 87822 | 88646 | pilW | 0/0 | 100 | 100 | NP_253242 | (pilW) type IV fimbrial biogenesis protein PilW [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_4 length_177930 cov_154.448393 | 87238 | 87825 | pilX | 0/0 | 100 | 100 | NP_253243 | (pilX) type 4 fimbrial biogenesis protein PilX [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_4 length_177930 cov_154.448393 | 83735 | 87226 | pilY1 | 10/30 | 100 | 92 | NP_253244 | (pilY1) type 4 fimbrial biogenesis protein PilY1 [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_4 length_177930 cov_154.448393 | 83386 | 83733 | pilY2 | 0/0 | 100 | 100 | NP_253245 | (pilY2) type 4 fimbrial biogenesis protein PilY2 [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_17 length_99321 cov_138.058321 | 70296 | 72488 | plcH | 0/0 | 100 | 100 | NP_249535 | (plcH) hemolytic phospholipase C precursor [PLC (VF0092)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_357530 cov_127.632981 | 182381 | 183553 | popB | 0/0 | 100 | 100 | NP_250399 | (popB) type III secretion system hydrophobic translocator pore protein PopB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_357530 cov_127.632981 | 183565 | 184452 | popD | 0/0 | 100 | 100 | NP_250400 | (popD) type III secretion system hydrophobic translocator pore protein PopD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_357530 cov_127.632981 | 175940 | 176806 | popN | 0/0 | 100 | 99 | NP_250389 | (popN) type III secretion system outer membrane protein PopN [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_122 length_7056 cov_153.244161 | 5446 | 6174 | pppA | 0/0 | 100 | 100 | NP_248765 | (pppA) Pseudomonas protein phosphatase PppA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_357530 cov_127.632981 | 187787 | 188209 | pscB | 0/0 | 100 | 100 | NP_250406 | (pscB) type III secretion system protein PscB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_357530 cov_127.632981 | 188209 | 190011 | pscC | 0/0 | 100 | 99 | NP_250407 | (pscC) type III secretion system secretin PscC [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_357530 cov_127.632981 | 190013 | 191311 | pscD | 0/0 | 100 | 99 | NP_250408 | (pscD) type III secretion system basal body protein PscD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_357530 cov_127.632981 | 191274 | 191477 | pscE | 0/0 | 100 | 97 | NP_250409 | (pscE) type III secretion system cochaperone PscE for PscG [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_357530 cov_127.632981 | 191480 | 191737 | pscF | 0/0 | 100 | 100 | NP_250410 | (pscF) type III secretion system needle filament protein PscF [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_357530 cov_127.632981 | 191740 | 192087 | pscG | 0/0 | 100 | 99 | NP_250411 | (pscG) type III secretion system chaperone PscG for PscF [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_357530 cov_127.632981 | 192084 | 192515 | pscH | 0/0 | 100 | 100 | NP_250412 | (pscH) type III secretion system protein PscH [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_357530 cov_127.632981 | 192515 | 192853 | pscI | 0/0 | 100 | 99 | NP_250413 | (pscI) type III secretion system inner rod protein PscI [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_357530 cov_127.632981 | 192850 | 193596 | pscJ | 0/0 | 100 | 99 | NP_250414 | (pscJ) type III secretion system inner MS ring protein [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_357530 cov_127.632981 | 193605 | 194225 | pscK | 1/6 | 99 | 98 | NP_250415 | (pscK) type III secretion system protein PscK [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_357530 cov_127.632981 | 194204 | 194848 | pscL | 0/0 | 100 | 99 | NP_250416 | (pscL) type III secretion systemt protein PscL [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_357530 cov_127.632981 | 174427 | 175749 | pscN | 0/0 | 100 | 99 | NP_250388 | (pscN) type III secretion system ATPase PscN [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_357530 cov_127.632981 | 173954 | 174430 | pscO | 0/0 | 100 | 100 | NP_250387 | (pscO) type III secretion system protein PscO [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_357530 cov_127.632981 | 172860 | 173966 | pscP | 2/21 | 99 | 97 | NP_250386 | (pscP) type III secretion system protein PscP [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_357530 cov_127.632981 | 171934 | 172863 | pscQ | 0/0 | 100 | 99 | NP_250385 | (pscQ) type III secretion system protein PscQ [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_357530 cov_127.632981 | 171284 | 171937 | pscR | 0/0 | 100 | 100 | NP_250384 | (pscR) type III secretion system protein PscR [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_357530 cov_127.632981 | 171015 | 171281 | pscS | 0/0 | 100 | 100 | NP_250383 | (pscS) type III secretion system protein PscS [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_357530 cov_127.632981 | 170230 | 171018 | pscT | 0/0 | 100 | 99 | NP_250382 | (pscT) type III secretion system protein PscT [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_357530 cov_127.632981 | 169184 | 170233 | pscU | 0/0 | 100 | 99 | NP_250381 | (pscU) type III secretion system protein PscU [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_66 length_30074 cov_132.830516 | 2426 | 3364 | ptxR | 0/0 | 100 | 100 | NP_250948 | (ptxR) transcriptional regulator PtxR [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_116 length_8062 cov_116.992862 | 6172 | 7158 | pvcA | 0/0 | 100 | 99 | NP_250944 | (pvcA) paerucumarin biosynthesis protein PvcA [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_116 length_8062 cov_116.992862 | 7176 | 8051 | pvcB | 0/0 | 100 | 100 | NP_250945 | (pvcB) paerucumarin biosynthesis protein PvcB [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_66 length_30074 cov_132.830516 | 47 | 1549 | pvcC | 0/0 | 100 | 100 | NP_250946 | (pvcC) paerucumarin biosynthesis protein PvcC [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_66 length_30074 cov_132.830516 | 1542 | 2189 | pvcD | 0/0 | 100 | 100 | NP_250947 | (pvcD) paerucumarin biosynthesis protein PvcD [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_72 length_23815 cov_158.603800 | 18949 | 20280 | pvdA | 0/0 | 100 | 99 | NP_251076 | (pvdA) L-ornithine N5-oxygenase PvdA [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1] |
| NODE_72 length_23815 cov_158.603800 | 4124 | 5773 | pvdE | 0/0 | 100 | 100 | NP_251087 | (pvdE) pyoverdine biosynthesis protein PvdE [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1] |
| NODE_72 length_23815 cov_158.603800 | 6151 | 6978 | pvdF | 0/0 | 100 | 100 | NP_251086 | (pvdF) pyoverdine synthetase F [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_74 length_21930 cov_130.540612 | 8881 | 9645 | pvdG | 0/0 | 100 | 99 | NP_251115 | (pvdG) pyoverdine biosynthesis protein PvdG [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_49 length_47091 cov_146.988961 | 23829 | 25238 | pvdH | 0/0 | 100 | 100 | NP_251103 | (pvdH) diaminobutyrate-2-oxoglutarate aminotransferase PvdH [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_49 length_47091 cov_146.988961 | 32902 | 47091 | pvdI | 2/6 | 92 | 99 | NP_251092 | (pvdI) peptide synthase [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_74 length_21930 cov_130.540612 | 9718 | 21868 | pvdL | 0/0 | 93 | 99 | NP_251114 | (pvdL) peptide synthase PvdL [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_72 length_23815 cov_158.603800 | 9236 | 10582 | pvdM | 0/0 | 100 | 100 | NP_251083 | (pvdM) dipeptidase precursor [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_72 length_23815 cov_158.603800 | 7930 | 9213 | pvdN | 0/0 | 100 | 99 | NP_251084 | (pvdN) pyoverdine biosynthesis protein PvdN [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_72 length_23815 cov_158.603800 | 7047 | 7901 | pvdO | 0/0 | 100 | 98 | NP_251085 | (pvdO) pyoverdine biosynthesis protein PvdO [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_72 length_23815 cov_158.603800 | 10798 | 12432 | pvdP | 0/0 | 100 | 100 | NP_251082 | (pvdP) tyrosinase required for pyoverdine maturation [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_72 length_23815 cov_158.603800 | 20403 | 22691 | pvdQ | 0/0 | 100 | 99 | NP_251075 | (pvdQ) 3-oxo-C12-homoserine lactone acylase PvdQ [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_74 length_21930 cov_130.540612 | 7674 | 8237 | pvdS | 0/0 | 100 | 100 | NP_251116 | (pvdS) extracytoplasmic-function sigma-70 factor [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1] |
| NODE_25 length_82150 cov_145.289450 | 9663 | 10550 | rhlA | 0/0 | 100 | 100 | NP_252169 | (rhlA) rhamnosyltransferase chain A [Rhamnolipid (VF0089)] [Pseudomonas aeruginosa PAO1] |
| NODE_25 length_82150 cov_145.289450 | 10616 | 11896 | rhlB | 0/0 | 100 | 99 | NP_252168 | (rhlB) rhamnosyltransferase chain B [Rhamnolipid (VF0089)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_168075 cov_138.083822 | 126391 | 127368 | rhlC | 0/0 | 100 | 100 | NP_249821 | (rhlC) rhamnosyltransferase 2 [Rhamnolipid biosynthesis (CVF524)] [Pseudomonas aeruginosa PAO1] |
| NODE_25 length_82150 cov_145.289450 | 12927 | 13532 | rhlI | 0/0 | 100 | 99 | NP_252166 | (rhlI) autoinducer synthesis protein RhlL [Quorum sensing (VF0093)] [Pseudomonas aeruginosa PAO1] |
| NODE_122 length_7056 cov_153.244161 | 4756 | 5436 | tagF/pppB | 0/0 | 100 | 100 | NP_248766 | (tagF/pppB) Pseudomonas protein phosphatase PppB [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_56 length_38986 cov_169.335706 | 5700 | 6614 | tagQ | 0/0 | 100 | 100 | NP_248760 | (tagQ) type VI secretiona ssociated protein TagQ outer membrane lipoprotein [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| NODE_56 length_38986 cov_169.335706 | 3926 | 5638 | tagR | 0/0 | 100 | 100 | NP_248761 | (tagR) type IV secretion associated protein TagR positively regulates PpkA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_56 length_38986 cov_169.335706 | 2734 | 3933 | tagS | 0/0 | 100 | 100 | NP_248762 | (tagS) type IV secretion associated protein TagS forming a stable inner membrane complex with TagT [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_56 length_38986 cov_169.335706 | 2015 | 2734 | tagT | 0/0 | 100 | 100 | NP_248763 | (tagT) type six secretion associated protein TagT ATP-binding component of ABC transporter [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_168075 cov_138.083822 | 144878 | 146794 | toxA | 0/0 | 100 | 99 | NP_249839 | (toxA) exotoxin A precursor [ExoA (VF0086)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_357530 cov_127.632981 | 332718 | 333182 | tse1 | 0/0 | 100 | 100 | NP_250535 | (tse1) type VI secretion system effector Tse1 peptidoglycanhydrolase [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| NODE_3 length_215852 cov_145.759180 | 188927 | 189403 | tse2 | 0/0 | 100 | 100 | NP_251392 | (tse2) type VI secretion system effector Tse2 [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| NODE_25 length_82150 cov_145.289450 | 3167 | 4393 | tse3 | 0/0 | 100 | 100 | NP_252174 | (tse3) type VI secretion system effector Tse3 glycoside hydrolase [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| NODE_70 length_26255 cov_164.489610 | 14699 | 16630 | vgrG1a | 0/0 | 100 | 99 | NP_248781 | (vgrG1a) type VI secretion system substrate VgrG1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_70 length_26255 cov_164.489610 | 19022 | 21247 | vgrG1b | 0/0 | 100 | 99 | NP_248785 | (vgrG1b) type VI secretion system substrate VgrG1b [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| NODE_23 length_86525 cov_160.666042 | 69988 | 71265 | waaA | 0/0 | 100 | 100 | NP_253675 | (waaA) lipopolysaccharide core biosynthesis protein WaaP [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| NODE_23 length_86525 cov_160.666042 | 41893 | 42960 | waaC | 0/0 | 100 | 100 | NP_253698 | (waaC) 3-deoxy-D-manno-octulosonic-acid (KDO) transferase [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| NODE_23 length_86525 cov_160.666042 | 40859 | 41896 | waaF | 0/0 | 100 | 100 | NP_253699 | (waaF) heptosyltransferase I [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| NODE_23 length_86525 cov_160.666042 | 42957 | 44078 | waaG | 0/0 | 100 | 99 | NP_253697 | (waaG) B-band O-antigen polymerase [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| NODE_23 length_86525 cov_160.666042 | 44075 | 44881 | waaP | 0/0 | 100 | 100 | NP_253696 | (waaP) UDP-glucose:(heptosyl) LPS alpha 13-glucosyltransferase WaaG [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| NODE_4 length_177930 cov_154.448393 | 114234 | 115106 | xcpA/pilD | 0/0 | 100 | 100 | NP_253218 | (xcpA/pilD) type 4 prepilin peptidase PilD [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_105097 cov_144.590497 | 97656 | 98363 | xcpP | 0/0 | 100 | 100 | NP_251794 | (xcpP) secretion protein XcpP [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_105097 cov_144.590497 | 98368 | 100344 | xcpQ | 0/0 | 100 | 100 | NP_251795 | (xcpQ) general secretion pathway protein D [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_105097 cov_144.590497 | 95928 | 97436 | xcpR | 0/0 | 100 | 99 | NP_251793 | (xcpR) general secretion pathway protein E [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_105097 cov_144.590497 | 94711 | 95928 | xcpS | 0/0 | 100 | 100 | NP_251792 | (xcpS) general secretion pathway protein F [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_105097 cov_144.590497 | 94260 | 94706 | xcpT | 0/0 | 100 | 100 | NP_251791 | (xcpT) general secretion pathway protein G [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_105097 cov_144.590497 | 93735 | 94253 | xcpU | 0/0 | 100 | 100 | NP_251790 | (xcpU) general secretion pathway protein H [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_105097 cov_144.590497 | 93349 | 93738 | xcpV | 0/0 | 100 | 100 | NP_251789 | (xcpV) general secretion pathway protein I [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_105097 cov_144.590497 | 92639 | 93352 | xcpW | 0/0 | 100 | 100 | NP_251788 | (xcpW) general secretion pathway protein J [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_105097 cov_144.590497 | 91641 | 92642 | xcpX | 0/0 | 100 | 97 | NP_251787 | (xcpX) general secretion pathway protein K [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_105097 cov_144.590497 | 90496 | 91644 | xcpY | 0/0 | 100 | 99 | NP_251786 | (xcpY) general secretion pathway protein L [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_105097 cov_144.590497 | 89970 | 90494 | xcpZ | 0/0 | 100 | 100 | NP_251785 | (xcpZ) general secretion pathway protein M [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
Sample-04
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| NODE_1 length_342707 cov_147.419969 | 257289 | 258458 | alg44 | 0/0 | 100 | 100 | NP_252232 | (alg44) alginate biosynthesis protein Alg8 [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_342707 cov_147.419969 | 258541 | 260025 | alg8 | 0/0 | 100 | 100 | NP_252231 | (alg8) alginate-c5-mannuronan-epimerase AlgG [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_342707 cov_147.419969 | 244836 | 246281 | algA | 0/0 | 100 | 99 | NP_252241 | (algA) phosphomannose isomerase / guanosine 5’-diphospho-D-mannose pyrophosphorylase [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_3 length_248714 cov_177.247984 | 154771 | 156120 | algB | 0/0 | 100 | 100 | NP_254170 | (algB) two-component response regulator AlgB [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_21 length_87347 cov_167.450602 | 59097 | 60488 | algC | 0/0 | 100 | 100 | NP_254009 | (algC) phosphomannomutase AlgC [Alginate biosynthesis (CVF522)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_342707 cov_147.419969 | 260165 | 261475 | algD | 0/0 | 100 | 100 | NP_252230 | (algD) GDP-mannose 6-dehydrogenase AlgD [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_342707 cov_147.419969 | 254379 | 255851 | algE | 0/0 | 100 | 100 | NP_252234 | (algE) alginate biosynthetic protein AlgK precursor [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_342707 cov_147.419969 | 246478 | 247128 | algF | 0/0 | 100 | 100 | NP_252240 | (algF) alginate o-acetyltransferase AlgF [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_342707 cov_147.419969 | 252727 | 254358 | algG | 0/0 | 100 | 100 | NP_252235 | (algG) outer membrane protein AlgE [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_342707 cov_147.419969 | 248391 | 249953 | algI | 0/0 | 100 | 100 | NP_252238 | (algI) alginate o-acetyltransferase AlgI [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_342707 cov_147.419969 | 247201 | 248376 | algJ | 0/0 | 100 | 100 | NP_252239 | (algJ) alginate o-acetyltransferase AlgJ [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_342707 cov_147.419969 | 255848 | 257275 | algK | 0/0 | 100 | 100 | NP_252233 | (algK) alginate biosynthesis protein Alg44 [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_342707 cov_147.419969 | 250183 | 251286 | algL | 0/0 | 100 | 100 | NP_252237 | (algL) poly(beta-d-mannuronate) lyase precursor AlgL [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_12 length_142306 cov_162.495187 | 16870 | 17928 | algP/algR3 | 0/0 | 100 | 100 | NP_253940 | (algP/algR3) alginate regulatory protein AlgP [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_12 length_142306 cov_162.495187 | 15571 | 16053 | algQ | 0/0 | 100 | 100 | NP_253942 | (algQ) Alginate regulatory protein AlgQ [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_12 length_142306 cov_162.495187 | 9680 | 10426 | algR | 0/0 | 100 | 100 | NP_253948 | (algR) alginate biosynthesis regulatory protein AlgR [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_14 length_134143 cov_149.710128 | 40205 | 40786 | algU | 0/0 | 100 | 100 | NP_249453 | (algU) alginate biosynthesis protein AlgZ/FimS [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_5 length_217641 cov_149.017609 | 30414 | 31583 | algW | 0/0 | 100 | 100 | NP_253136 | (algW) AlgW protein [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_342707 cov_147.419969 | 251290 | 252714 | algX | 0/0 | 100 | 100 | NP_252236 | (algX) alginate biosynthesis protein AlgX [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_12 length_142306 cov_162.495187 | 8599 | 9675 | algZ | 0/0 | 100 | 100 | NP_253949 | (algZ) sigma factor AlgU [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_74 length_20098 cov_130.262175 | 5279 | 6718 | aprA | 0/0 | 100 | 100 | NP_249940 | (aprA) alkaline metalloproteinase precursor [Alkaline protease (VF0090)] [Pseudomonas aeruginosa PAO1] |
| NODE_13 length_141417 cov_160.200545 | 65381 | 72799 | chpA | 0/0 | 100 | 100 | NP_249104 | (chpA) still frameshift probable component of chemotactic signal transduction system [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_13 length_141417 cov_160.200545 | 72792 | 73823 | chpB | 0/0 | 100 | 100 | NP_249105 | (chpB) probable methylesterase [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_13 length_141417 cov_160.200545 | 73820 | 74326 | chpC | 0/0 | 100 | 99 | NP_249106 | (chpC) probable chemotaxis protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_13 length_141417 cov_160.200545 | 74334 | 75128 | chpD | 0/0 | 100 | 99 | NP_249107 | (chpD) probable transcriptional regulator [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_13 length_141417 cov_160.200545 | 75204 | 75815 | chpE | 0/0 | 100 | 99 | NP_249108 | (chpE) probable chemotaxis protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_35 length_56530 cov_170.988433 | 9336 | 12044 | clpV1 | 0/0 | 100 | 100 | NP_248780 | (clpV1) type VI secretion system AAA+ family ATPase [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_57 length_30104 cov_151.990176 | 22374 | 23735 | exoS | 0/0 | 100 | 99 | NP_252530 | (exoS) type III secretion system effector ExoS ADP ribosyltransferase activity and GTPase-activating protein activity [ExoS (VF0096)] [Pseudomonas aeruginosa PAO1] |
| NODE_46 length_43251 cov_171.303539 | 13023 | 14396 | exoT | 0/0 | 100 | 99 | NP_248734 | (exoT) type III secretion system effector ExoT ADP ribosyltransferase activity and GTPase-activating protein activity [ExoT (VF0097)] [Pseudomonas aeruginosa PAO1] |
| NODE_22 length_86784 cov_127.956705 | 30373 | 31509 | exoY | 0/0 | 100 | 100 | NP_250881 | (exoY) type III secretion system effector ExoY adenylate cyclase [ExoY (VF0099)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_305745 cov_136.468178 | 93199 | 94035 | exsA | 0/0 | 100 | 100 | NP_250404 | (exsA) type III secretion system regulatory protein ExsA [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_305745 cov_136.468178 | 92488 | 92901 | exsB | 0/0 | 100 | 98 | NP_250403 | (exsB) type III secretion system piolitin ExsB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_305745 cov_136.468178 | 91788 | 92225 | exsC | 0/0 | 100 | 99 | NP_250401 | (exsC) type III secretion system regulatory protein ExsC [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_305745 cov_136.468178 | 94133 | 94963 | exsD | 0/0 | 100 | 99 | NP_250405 | (exsD) type III secretion system regulatory protein ExsD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_305745 cov_136.468178 | 92234 | 92479 | exsE | 0/0 | 100 | 97 | NP_250402 | (exsE) type III secretion system regulatory protein ExsE [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_9 length_164743 cov_159.628527 | 13662 | 14171 | fimT | 0/0 | 100 | 100 | NP_253239 | (fimT) type 4 fimbrial biogenesis protein FimT [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_9 length_164743 cov_159.628527 | 14277 | 14783 | fimU | 0/0 | 100 | 100 | NP_253240 | (fimU) type 4 fimbrial biogenesis protein FimU [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_29 length_70142 cov_151.878299 | 4345 | 7104 | fimV | 0/0 | 100 | 100 | NP_251805 | (fimV) putative Type IV pili related protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_8 length_175701 cov_140.490440 | 116101 | 116943 | fleN | 0/0 | 100 | 100 | NP_250145 | (fleN) flagellar synthesis regulator FleN [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_144045 cov_142.265899 | 86488 | 87960 | fleQ | 0/0 | 100 | 99 | NP_249788 | (fleQ) transcriptional regulator FleQ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_144045 cov_142.265899 | 89286 | 90707 | fleR | 0/0 | 100 | 99 | NP_249790 | (fleR) two-component response regulator [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_144045 cov_142.265899 | 88073 | 89281 | fleS | 0/0 | 100 | 99 | NP_249789 | (fleS) two-component sensor [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_203356 cov_143.304148 | 17564 | 18262 | flgA | 0/0 | 100 | 100 | NP_252040 | (flgA) flagellar basal body P-ring biosynthesis protein FlgA [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_144045 cov_142.265899 | 59651 | 60058 | flgB | 0/0 | 100 | 100 | NP_249768 | (flgB) flagellar basal body rod protein FlgB [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_144045 cov_142.265899 | 60064 | 60504 | flgC | 0/0 | 100 | 100 | NP_249769 | (flgC) flagellar basal-body rod protein FlgC [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_144045 cov_142.265899 | 60517 | 61230 | flgD | 0/0 | 100 | 100 | NP_249770 | (flgD) flagellar basal-body rod modification protein FlgD [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_144045 cov_142.265899 | 61258 | 62646 | flgE | 0/0 | 100 | 100 | NP_249771 | (flgE) flagellar hook protein FlgE [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_144045 cov_142.265899 | 62864 | 63613 | flgF | 0/0 | 100 | 100 | NP_249772 | (flgF) flagellar basal-body rod protein FlgF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_144045 cov_142.265899 | 63660 | 64445 | flgG | 0/0 | 100 | 100 | NP_249773 | (flgG) flagellar basal-body rod protein FlgG [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_144045 cov_142.265899 | 64491 | 65186 | flgH | 0/0 | 100 | 99 | NP_249774 | (flgH) flagellar L-ring protein precursor FlgH [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_144045 cov_142.265899 | 65198 | 66307 | flgI | 0/0 | 100 | 100 | NP_249775 | (flgI) flagellar P-ring protein precursor FlgI [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_144045 cov_142.265899 | 66318 | 67520 | flgJ | 0/0 | 100 | 100 | NP_249776 | (flgJ) flagellar rod assembly protein/muramidase FlgJ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_203356 cov_143.304148 | 17096 | 17419 | flgM | 0/0 | 100 | 100 | NP_252041 | (flgM) negative regulator of flagellin synthesis [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_203356 cov_143.304148 | 16571 | 17041 | flgN | 0/0 | 100 | 100 | NP_252042 | (flgN) flagella synthesis protein FlgN [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_8 length_175701 cov_140.490440 | 112466 | 114589 | flhA | 0/0 | 100 | 100 | NP_250143 | (flhA) flagellar biosynthesis protein FlhA [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_8 length_175701 cov_140.490440 | 108474 | 109610 | flhB | 0/0 | 100 | 100 | NP_250140 | (flhB) flagellar biosynthetic protein FlhB [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_8 length_175701 cov_140.490440 | 114673 | 115962 | flhF | 0/0 | 100 | 100 | NP_250144 | (flhF) flagellar biosynthesis protein FlhF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_8 length_175701 cov_140.490440 | 116940 | 117683 | fliA | 0/0 | 100 | 100 | NP_250146 | (fliA) flagellar biosynthesis sigma factor FliA [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_144045 cov_142.265899 | 90954 | 91283 | fliE | 0/0 | 100 | 100 | NP_249791 | (fliE) flagellar hook-basal body complex protein FliE [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_144045 cov_142.265899 | 91306 | 93102 | fliF | 0/0 | 100 | 100 | NP_249792 | (fliF) flagellar M-ring protein FliF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_144045 cov_142.265899 | 93108 | 94124 | fliG | 0/0 | 100 | 100 | NP_249793 | (fliG) flagellar motor switch protein G [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_144045 cov_142.265899 | 94126 | 94932 | fliH | 0/0 | 100 | 99 | NP_249794 | (fliH) flagellar assembly protein H [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_144045 cov_142.265899 | 94922 | 96277 | fliI | 0/0 | 100 | 99 | NP_249795 | (fliI) flagellum-specific ATP synthase FliI [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_144045 cov_142.265899 | 96291 | 96734 | fliJ | 0/0 | 100 | 100 | NP_249796 | (fliJ) flagellar protein FliJ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_8 length_175701 cov_140.490440 | 102635 | 103918 | fliK | 0/0 | 100 | 100 | NP_250132 | (fliK) flagellar hook-length control protein FliK [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_8 length_175701 cov_140.490440 | 104162 | 104683 | fliL | 0/0 | 100 | 100 | NP_250133 | (fliL) flagellar basal body protein FliL [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_8 length_175701 cov_140.490440 | 104691 | 105662 | fliM | 0/0 | 100 | 100 | NP_250134 | (fliM) flagellar motor switch protein FliM [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_8 length_175701 cov_140.490440 | 105690 | 106163 | fliN | 0/0 | 100 | 100 | NP_250135 | (fliN) flagellar motor switch protein FliN [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_8 length_175701 cov_140.490440 | 106165 | 106617 | fliO | 0/0 | 100 | 100 | NP_250136 | (fliO) flagellar protein FliO [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_8 length_175701 cov_140.490440 | 106614 | 107381 | fliP | 0/0 | 100 | 100 | NP_250137 | (fliP) flagellar biosynthetic protein FliP [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_8 length_175701 cov_140.490440 | 107426 | 107695 | fliQ | 0/0 | 100 | 100 | NP_250138 | (fliQ) flagellar biosynthetic protein FliQ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_8 length_175701 cov_140.490440 | 107695 | 108471 | fliR | 0/0 | 100 | 99 | NP_250139 | (fliR) flagellar biosynthetic protein FliR [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_118 length_9257 cov_111.403050 | 5478 | 7640 | fptA | 0/0 | 100 | 100 | NP_252911 | (fptA) Fe(III)-pyochelin receptor precursor [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_136 length_6121 cov_6.076605 | 2428 | 4875 | fpvA | 0/0 | 100 | 100 | NP_251088 | (fpvA) ferripyoverdine receptor FpvA [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1] |
| NODE_35 length_56530 cov_170.988433 | 4465 | 4953 | hcp1 | 0/0 | 100 | 100 | NP_248775 | (hcp1) type VI secretion system substrate Hcp1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_35 length_56530 cov_170.988433 | 1239 | 2273 | hsiA1 | 0/0 | 100 | 99 | NP_248772 | (hsiA1) type VI secretion system hcp secretion island protein HsiA1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_35 length_56530 cov_170.988433 | 2362 | 2880 | hsiB1/vipA | 0/0 | 100 | 100 | NP_248773 | (hsiB1/vipA) type VI secretion system tubule-forming protein VipA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_35 length_56530 cov_170.988433 | 2893 | 4389 | hsiC1/vipB | 0/0 | 100 | 100 | NP_248774 | (hsiC1/vipB) type VI secretion system tubule-forming protein VipB [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_35 length_56530 cov_170.988433 | 5121 | 5966 | hsiE1 | 0/0 | 100 | 100 | NP_248776 | (hsiE1) type VI secretion system hcp secretion island protein HsiE1 interacting with HsiB1 to form a novel subcomplex of the T6SS [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_35 length_56530 cov_170.988433 | 5968 | 6477 | hsiF1 | 0/0 | 100 | 100 | NP_248777 | (hsiF1) type VI secretion system hcp secretion island protein HsiF1 a gp25-like protein but not exhibit lysozyme activity [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_35 length_56530 cov_170.988433 | 6474 | 8333 | hsiG1 | 0/0 | 100 | 100 | NP_248778 | (hsiG1) type VI secretion system hcp secretion island protein HsiG1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_35 length_56530 cov_170.988433 | 8297 | 9343 | hsiH1 | 0/0 | 100 | 100 | NP_248779 | (hsiH1) type VI secretion system hcp secretion island protein HsiH1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_187 length_2719 cov_130.755110 | 145 | 1479 | hsiJ1 | 0/0 | 100 | 99 | NP_248769 | (hsiJ1) type VI secretion system hcp secretion island protein HsiJ1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_130 length_7076 cov_149.269038 | 1454 | 4762 | icmF1/tssM1 | 1/3 | 100 | 99 | NP_248767 | (icmF1/tssM1) type VI secretion system protein IcmF1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_305745 cov_136.468178 | 268635 | 269891 | lasA | 0/0 | 100 | 99 | NP_250562 | (lasA) LasA protease precursor [LasA (VF0088)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_342707 cov_147.419969 | 51033 | 52529 | lasB | 0/0 | 100 | 100 | NP_252413 | (lasB) elastase LasB [LasB (VF0087)] [Pseudomonas aeruginosa PAO1] |
| NODE_8 length_175701 cov_140.490440 | 91393 | 91998 | lasI | 0/0 | 100 | 100 | NP_250123 | (lasI) autoinducer synthesis protein LasI [Quorum sensing (VF0093)] [Pseudomonas aeruginosa PAO1] |
| NODE_187 length_2719 cov_130.755110 | 1495 | 1959 | lip1 | 0/0 | 100 | 100 | NP_248770 | (lip1) lipoprotein [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_84 length_17971 cov_123.644853 | 11668 | 11886 | mbtH-like | 0/0 | 100 | 100 | NP_251102 | (mbtH-like) MbtH-like protein from the pyoverdine cluster [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_19 length_97790 cov_155.616612 | 68662 | 69513 | motA | 0/0 | 100 | 100 | NP_253641 | (motA) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_19 length_97790 cov_155.616612 | 67599 | 68642 | motB | 0/0 | 100 | 100 | NP_253640 | (motB) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_8 length_175701 cov_140.490440 | 122678 | 123418 | motC | 0/0 | 100 | 100 | NP_250151 | (motC) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_8 length_175701 cov_140.490440 | 123431 | 124321 | motD | 0/0 | 100 | 100 | NP_250152 | (motD) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_342707 cov_147.419969 | 277340 | 278305 | motY | 0/0 | 100 | 100 | NP_252216 | (motY) probable outer membrane protein precursor [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_14 length_134143 cov_149.710128 | 40818 | 41371 | mucA | 1/31 | 95 | 95 | NP_249454 | (mucA) alkaline metalloproteinase precursor [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_14 length_134143 cov_149.710128 | 41380 | 42330 | mucB | 0/0 | 100 | 100 | NP_249455 | (mucB) anti-sigma factor MucA inhibitor of alg gene expression [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_14 length_134143 cov_149.710128 | 42327 | 42782 | mucC | 0/0 | 100 | 100 | NP_249456 | (mucC) negative regulator for alginate biosynthesis MucB [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_14 length_134143 cov_149.710128 | 42822 | 44246 | mucD | 0/0 | 100 | 100 | NP_249457 | (mucD) serine protease MucD precursor [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| NODE_10 length_155941 cov_147.614202 | 145125 | 145394 | mucE | 0/0 | 100 | 100 | NP_252722 | (mucE) small envelope protein MucE [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_342707 cov_147.419969 | 132634 | 133986 | mucP | 0/0 | 100 | 100 | NP_252339 | (mucP) metalloprotease protease [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| NODE_55 length_30573 cov_163.636903 | 21854 | 23284 | pchA | 0/0 | 100 | 100 | NP_252921 | (pchA) salicylate biosynthesis isochorismate synthase PchA [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_55 length_30573 cov_163.636903 | 23281 | 23586 | pchB | 0/0 | 100 | 100 | NP_252920 | (pchB) salicylate biosynthesis protein PchB [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_55 length_30573 cov_163.636903 | 23586 | 24341 | pchC | 0/0 | 100 | 100 | NP_252919 | (pchC) pyochelin biosynthetic protein PchC [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_55 length_30573 cov_163.636903 | 24338 | 25981 | pchD | 0/0 | 100 | 99 | NP_252918 | (pchD) pyochelin biosynthesis protein PchD [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_118 length_9257 cov_111.403050 | 907 | 1956 | pchG | 0/0 | 100 | 100 | NP_252914 | (pchG) pyochelin biosynthetic protein PchG [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_118 length_9257 cov_111.403050 | 1953 | 3665 | pchH | 0/0 | 100 | 99 | NP_252913 | (pchH) ABC transporter ATP-binding protein [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_118 length_9257 cov_111.403050 | 3662 | 5386 | pchI | 0/0 | 100 | 99 | NP_252912 | (pchI) ABC transporter ATP-binding protein [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_55 length_30573 cov_163.636903 | 26211 | 27101 | pchR | 0/0 | 100 | 100 | NP_252917 | (pchR) transcriptional regulator PchR [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_305745 cov_136.468178 | 83997 | 84275 | pcr1 | 0/0 | 100 | 100 | NP_250390 | (pcr1) type III secretion system protein Pcr1 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_305745 cov_136.468178 | 84262 | 84633 | pcr2 | 0/0 | 100 | 99 | NP_250391 | (pcr2) type III secretion system protein Pcr2 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_305745 cov_136.468178 | 84630 | 84995 | pcr3 | 0/0 | 100 | 99 | NP_250392 | (pcr3) type III secretion system protein Pcr3 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_305745 cov_136.468178 | 85000 | 85329 | pcr4 | 0/0 | 100 | 100 | NP_250393 | (pcr4) type III secretion system protein Pcr4 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_305745 cov_136.468178 | 85326 | 87446 | pcrD | 0/0 | 100 | 99 | NP_250394 | (pcrD) type III secretion system protein PcrD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_305745 cov_136.468178 | 87905 | 88201 | pcrG | 0/0 | 100 | 100 | NP_250396 | (pcrG) type III secretion system cytoplasmic regulator PcrG [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_305745 cov_136.468178 | 89104 | 89610 | pcrH | 1/3 | 100 | 99 | NP_250398 | (pcrH) type III secretion system regulatory protein PcrH [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_305745 cov_136.468178 | 87443 | 87877 | pcrR | 0/0 | 100 | 100 | NP_250395 | (pcrR) type III secretion system regulatory protein PcrR [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_305745 cov_136.468178 | 88211 | 89095 | pcrV | 0/0 | 100 | 99 | NP_250397 | (pcrV) type III secretion system hydrophilic translocator needle tip protein PcrV [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_305745 cov_136.468178 | 304679 | 305121 | phzA1 | 0/0 | 91 | 96 | NP_252899 | (phzA1) phenazine biosynthesis protein PhzA [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| NODE_79 length_19089 cov_147.157059 | 631 | 1119 | phzA1 | 0/0 | 100 | 100 | NP_252899 | (phzA1) phenazine biosynthesis protein PhzA [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| NODE_79 length_19089 cov_147.157059 | 113 | 601 | phzB1 | 0/0 | 100 | 99 | NP_252900 | (phzB1) phenazine biosynthesis protein PhzB [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| NODE_237 length_1386 cov_209.330787 | 597 | 1220 | phzD1 | 0/0 | 100 | 99 | NP_252902 | (phzD1) phenazine biosynthesis protein PhzD isochorismatase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| NODE_119 length_9225 cov_104.088544 | 179 | 823 | phzG1 | 0/0 | 100 | 99 | NP_252906 | (phzG1) phenazine biosynthesis protein PhzG pyridoxamine 5’-phosphate oxidase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| NODE_46 length_43251 cov_171.303539 | 20539 | 22371 | phzH | 0/0 | 100 | 100 | NP_248741 | (phzH) phenazine-modifying enzyme [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| NODE_79 length_19089 cov_147.157059 | 1816 | 2820 | phzM | 0/0 | 100 | 100 | NP_252898 | (phzM) phenazine-specific methyltransferase PhzM (adenosylmethionine dependent methyltransferase) [Pyocyanin (VF0100)] [Pseudomonas aeruginosa PAO1] |
| NODE_181 length_3010 cov_132.969997 | 299 | 1507 | phzS | 0/0 | 100 | 100 | NP_252907 | (phzS) flavin dependent hydroxylase PhzS [Pyocyanin (VF0100)] [Pseudomonas aeruginosa PAO1] |
| NODE_9 length_164743 cov_159.628527 | 20585 | 21010 | pilE | 0/0 | 100 | 100 | NP_253246 | (pilE) type 4 fimbrial biogenesis protein PilE [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_36 length_56032 cov_152.090626 | 16466 | 17224 | pilF | 0/0 | 100 | 100 | NP_252494 | (pilF) type 4 fimbrial biogenesis protein PilF [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_13 length_141417 cov_160.200545 | 60894 | 61301 | pilG | 0/0 | 100 | 100 | NP_249099 | (pilG) twitching motility protein PilG [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_13 length_141417 cov_160.200545 | 61348 | 61713 | pilH | 0/0 | 100 | 100 | NP_249100 | (pilH) twitching motility protein PilH [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_13 length_141417 cov_160.200545 | 61764 | 62300 | pilI | 0/0 | 100 | 100 | NP_249101 | (pilI) twitching motility protein PilI [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_13 length_141417 cov_160.200545 | 62385 | 64433 | pilJ | 0/0 | 100 | 100 | NP_249102 | (pilJ) twitching motility protein PilJ [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_13 length_141417 cov_160.200545 | 64494 | 65369 | pilK | 0/0 | 100 | 100 | NP_249103 | (pilK) methyltransferase PilK [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_16 length_108054 cov_162.203525 | 100140 | 101204 | pilM | 0/0 | 100 | 100 | NP_253731 | (pilM) type IV pilus inner membrane platform protein PilM [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_16 length_108054 cov_162.203525 | 101204 | 101800 | pilN | 0/0 | 100 | 100 | NP_253730 | (pilN) type IV pilus inner membrane platform protein PilN [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_16 length_108054 cov_162.203525 | 101797 | 102420 | pilO | 0/0 | 100 | 100 | NP_253729 | (pilO) type IV pilus inner membrane platform protein PilO [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_16 length_108054 cov_162.203525 | 102417 | 102941 | pilP | 0/0 | 100 | 100 | NP_253728 | (pilP) type IV pilus biogenesis protein PilP [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_16 length_108054 cov_162.203525 | 102995 | 105139 | pilQ | 0/0 | 100 | 97 | NP_253727 | (pilQ) type 4 fimbrial biogenesis protein PilQ [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_9 length_164743 cov_159.628527 | 11050 | 12387 | pilR | 0/0 | 100 | 100 | NP_253237 | (pilR) two-component response regulator PilR [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_9 length_164743 cov_159.628527 | 9443 | 11035 | pilS | 0/0 | 100 | 100 | NP_253236 | (pilS) two-component sensor PilS [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_13 length_141417 cov_160.200545 | 47824 | 48858 | pilT | 0/0 | 100 | 100 | NP_249086 | (pilT) twitching motility protein PilT [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_13 length_141417 cov_160.200545 | 49036 | 50184 | pilU | 0/0 | 100 | 100 | NP_249087 | (pilU) twitching motility protein PilU [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_9 length_164743 cov_159.628527 | 14774 | 15331 | pilV | 0/0 | 100 | 100 | NP_253241 | (pilV) type IV pilus biogenesis protein PilV [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_9 length_164743 cov_159.628527 | 15328 | 16152 | pilW | 0/0 | 100 | 100 | NP_253242 | (pilW) type IV fimbrial biogenesis protein PilW [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_9 length_164743 cov_159.628527 | 16149 | 16736 | pilX | 0/0 | 100 | 100 | NP_253243 | (pilX) type 4 fimbrial biogenesis protein PilX [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_9 length_164743 cov_159.628527 | 16748 | 20239 | pilY1 | 10/30 | 100 | 92 | NP_253244 | (pilY1) type 4 fimbrial biogenesis protein PilY1 [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_9 length_164743 cov_159.628527 | 20241 | 20588 | pilY2 | 0/0 | 100 | 100 | NP_253245 | (pilY2) type 4 fimbrial biogenesis protein PilY2 [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_20 length_91700 cov_143.417090 | 19416 | 21608 | plcH | 0/0 | 100 | 100 | NP_249535 | (plcH) hemolytic phospholipase C precursor [PLC (VF0092)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_305745 cov_136.468178 | 89591 | 90763 | popB | 0/0 | 100 | 99 | NP_250399 | (popB) type III secretion system hydrophobic translocator pore protein PopB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_305745 cov_136.468178 | 90775 | 91662 | popD | 0/0 | 100 | 100 | NP_250400 | (popD) type III secretion system hydrophobic translocator pore protein PopD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_305745 cov_136.468178 | 83150 | 84016 | popN | 0/0 | 100 | 99 | NP_250389 | (popN) type III secretion system outer membrane protein PopN [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_130 length_7076 cov_149.269038 | 5449 | 6177 | pppA | 0/0 | 100 | 100 | NP_248765 | (pppA) Pseudomonas protein phosphatase PppA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_305745 cov_136.468178 | 94997 | 95419 | pscB | 0/0 | 100 | 100 | NP_250406 | (pscB) type III secretion system protein PscB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_305745 cov_136.468178 | 95419 | 97221 | pscC | 0/0 | 100 | 99 | NP_250407 | (pscC) type III secretion system secretin PscC [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_305745 cov_136.468178 | 97223 | 98521 | pscD | 0/0 | 100 | 100 | NP_250408 | (pscD) type III secretion system basal body protein PscD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_305745 cov_136.468178 | 98484 | 98687 | pscE | 0/0 | 100 | 99 | NP_250409 | (pscE) type III secretion system cochaperone PscE for PscG [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_305745 cov_136.468178 | 98690 | 98947 | pscF | 0/0 | 100 | 100 | NP_250410 | (pscF) type III secretion system needle filament protein PscF [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_305745 cov_136.468178 | 98950 | 99297 | pscG | 0/0 | 100 | 99 | NP_250411 | (pscG) type III secretion system chaperone PscG for PscF [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_305745 cov_136.468178 | 99294 | 99725 | pscH | 0/0 | 100 | 100 | NP_250412 | (pscH) type III secretion system protein PscH [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_305745 cov_136.468178 | 99725 | 100063 | pscI | 0/0 | 100 | 100 | NP_250413 | (pscI) type III secretion system inner rod protein PscI [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_305745 cov_136.468178 | 100060 | 100806 | pscJ | 0/0 | 100 | 99 | NP_250414 | (pscJ) type III secretion system inner MS ring protein [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_305745 cov_136.468178 | 100815 | 101435 | pscK | 1/6 | 99 | 98 | NP_250415 | (pscK) type III secretion system protein PscK [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_305745 cov_136.468178 | 101414 | 102058 | pscL | 0/0 | 100 | 100 | NP_250416 | (pscL) type III secretion systemt protein PscL [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_305745 cov_136.468178 | 81637 | 82959 | pscN | 0/0 | 100 | 99 | NP_250388 | (pscN) type III secretion system ATPase PscN [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_305745 cov_136.468178 | 81164 | 81640 | pscO | 0/0 | 100 | 99 | NP_250387 | (pscO) type III secretion system protein PscO [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_305745 cov_136.468178 | 80058 | 81176 | pscP | 1/9 | 100 | 98 | NP_250386 | (pscP) type III secretion system protein PscP [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_305745 cov_136.468178 | 79132 | 80061 | pscQ | 0/0 | 100 | 99 | NP_250385 | (pscQ) type III secretion system protein PscQ [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_305745 cov_136.468178 | 78482 | 79135 | pscR | 0/0 | 100 | 99 | NP_250384 | (pscR) type III secretion system protein PscR [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_305745 cov_136.468178 | 78213 | 78479 | pscS | 0/0 | 100 | 100 | NP_250383 | (pscS) type III secretion system protein PscS [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_305745 cov_136.468178 | 77428 | 78216 | pscT | 0/0 | 100 | 99 | NP_250382 | (pscT) type III secretion system protein PscT [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_305745 cov_136.468178 | 76382 | 77431 | pscU | 0/0 | 100 | 99 | NP_250381 | (pscU) type III secretion system protein PscU [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_49 length_38116 cov_123.211546 | 10484 | 11422 | ptxR | 0/0 | 100 | 100 | NP_250948 | (ptxR) transcriptional regulator PtxR [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_49 length_38116 cov_123.211546 | 6178 | 7164 | pvcA | 0/0 | 100 | 99 | NP_250944 | (pvcA) paerucumarin biosynthesis protein PvcA [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_49 length_38116 cov_123.211546 | 7182 | 8057 | pvcB | 0/0 | 100 | 100 | NP_250945 | (pvcB) paerucumarin biosynthesis protein PvcB [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_49 length_38116 cov_123.211546 | 8109 | 9611 | pvcC | 0/0 | 100 | 99 | NP_250946 | (pvcC) paerucumarin biosynthesis protein PvcC [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_49 length_38116 cov_123.211546 | 9604 | 10251 | pvcD | 0/0 | 100 | 100 | NP_250947 | (pvcD) paerucumarin biosynthesis protein PvcD [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_71 length_21864 cov_133.183366 | 13906 | 15237 | pvdA | 0/0 | 100 | 100 | NP_251076 | (pvdA) L-ornithine N5-oxygenase PvdA [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1] |
| NODE_136 length_6121 cov_6.076605 | 676 | 2325 | pvdE | 0/0 | 100 | 100 | NP_251087 | (pvdE) pyoverdine biosynthesis protein PvdE [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1] |
| NODE_40 length_48506 cov_120.122344 | 34640 | 35404 | pvdG | 0/0 | 100 | 99 | NP_251115 | (pvdG) pyoverdine biosynthesis protein PvdG [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_84 length_17971 cov_123.644853 | 10181 | 11590 | pvdH | 0/0 | 100 | 99 | NP_251103 | (pvdH) diaminobutyrate-2-oxoglutarate aminotransferase PvdH [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_40 length_48506 cov_120.122344 | 35478 | 48506 | pvdL | 0/0 | 100 | 99 | NP_251114 | (pvdL) peptide synthase PvdL [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_169 length_3601 cov_4.779512 | 439 | 1785 | pvdM | 0/0 | 100 | 100 | NP_251083 | (pvdM) dipeptidase precursor [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_195 length_2495 cov_144.510339 | 668 | 1522 | pvdO | 0/0 | 100 | 96 | NP_251085 | (pvdO) pyoverdine biosynthesis protein PvdO [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_169 length_3601 cov_4.779512 | 2001 | 3601 | pvdP | 0/0 | 98 | 100 | NP_251082 | (pvdP) tyrosinase required for pyoverdine maturation [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_71 length_21864 cov_133.183366 | 11495 | 13783 | pvdQ | 0/0 | 100 | 99 | NP_251075 | (pvdQ) 3-oxo-C12-homoserine lactone acylase PvdQ [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_40 length_48506 cov_120.122344 | 33433 | 33996 | pvdS | 0/0 | 100 | 100 | NP_251116 | (pvdS) extracytoplasmic-function sigma-70 factor [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_342707 cov_147.419969 | 324104 | 324991 | rhlA | 0/0 | 100 | 99 | NP_252169 | (rhlA) rhamnosyltransferase chain A [Rhamnolipid (VF0089)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_342707 cov_147.419969 | 325057 | 326337 | rhlB | 0/0 | 100 | 100 | NP_252168 | (rhlB) rhamnosyltransferase chain B [Rhamnolipid (VF0089)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_144045 cov_142.265899 | 120999 | 121976 | rhlC | 0/0 | 100 | 100 | NP_249821 | (rhlC) rhamnosyltransferase 2 [Rhamnolipid biosynthesis (CVF524)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_342707 cov_147.419969 | 327368 | 327973 | rhlI | 0/0 | 100 | 99 | NP_252166 | (rhlI) autoinducer synthesis protein RhlL [Quorum sensing (VF0093)] [Pseudomonas aeruginosa PAO1] |
| NODE_130 length_7076 cov_149.269038 | 4759 | 5439 | tagF/pppB | 0/0 | 100 | 100 | NP_248766 | (tagF/pppB) Pseudomonas protein phosphatase PppB [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_46 length_43251 cov_171.303539 | 36638 | 37552 | tagQ | 0/0 | 100 | 100 | NP_248760 | (tagQ) type VI secretiona ssociated protein TagQ outer membrane lipoprotein [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| NODE_46 length_43251 cov_171.303539 | 37614 | 39326 | tagR | 0/0 | 100 | 100 | NP_248761 | (tagR) type IV secretion associated protein TagR positively regulates PpkA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_46 length_43251 cov_171.303539 | 39319 | 40518 | tagS | 0/0 | 100 | 100 | NP_248762 | (tagS) type IV secretion associated protein TagS forming a stable inner membrane complex with TagT [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_46 length_43251 cov_171.303539 | 40518 | 41237 | tagT | 0/0 | 100 | 99 | NP_248763 | (tagT) type six secretion associated protein TagT ATP-binding component of ABC transporter [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_144045 cov_142.265899 | 139491 | 141407 | toxA | 0/0 | 100 | 99 | NP_249839 | (toxA) exotoxin A precursor [ExoA (VF0086)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_305745 cov_136.468178 | 239804 | 240268 | tse1 | 0/0 | 100 | 100 | NP_250535 | (tse1) type VI secretion system effector Tse1 peptidoglycanhydrolase [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| NODE_47 length_43238 cov_125.225991 | 30823 | 31299 | tse2 | 0/0 | 100 | 100 | NP_251392 | (tse2) type VI secretion system effector Tse2 [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_342707 cov_147.419969 | 317608 | 318834 | tse3 | 0/0 | 100 | 100 | NP_252174 | (tse3) type VI secretion system effector Tse3 glycoside hydrolase [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| NODE_35 length_56530 cov_170.988433 | 12091 | 14022 | vgrG1a | 0/0 | 100 | 100 | NP_248781 | (vgrG1a) type VI secretion system substrate VgrG1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_35 length_56530 cov_170.988433 | 16414 | 18639 | vgrG1b | 0/0 | 100 | 99 | NP_248785 | (vgrG1b) type VI secretion system substrate VgrG1b [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| NODE_24 length_84215 cov_160.153367 | 67650 | 68927 | waaA | 0/0 | 100 | 100 | NP_253675 | (waaA) lipopolysaccharide core biosynthesis protein WaaP [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| NODE_24 length_84215 cov_160.153367 | 41895 | 42962 | waaC | 0/0 | 100 | 100 | NP_253698 | (waaC) 3-deoxy-D-manno-octulosonic-acid (KDO) transferase [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| NODE_24 length_84215 cov_160.153367 | 40861 | 41898 | waaF | 0/0 | 100 | 100 | NP_253699 | (waaF) heptosyltransferase I [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| NODE_24 length_84215 cov_160.153367 | 42959 | 44080 | waaG | 0/0 | 100 | 100 | NP_253697 | (waaG) B-band O-antigen polymerase [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| NODE_24 length_84215 cov_160.153367 | 44077 | 44883 | waaP | 0/0 | 100 | 100 | NP_253696 | (waaP) UDP-glucose:(heptosyl) LPS alpha 13-glucosyltransferase WaaG [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| NODE_73 length_20605 cov_168.857414 | 4107 | 4979 | xcpA/pilD | 0/0 | 100 | 100 | NP_253218 | (xcpA/pilD) type 4 prepilin peptidase PilD [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_4 length_230083 cov_138.721829 | 6739 | 7446 | xcpP | 0/0 | 100 | 100 | NP_251794 | (xcpP) secretion protein XcpP [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_4 length_230083 cov_138.721829 | 4758 | 6734 | xcpQ | 0/0 | 100 | 100 | NP_251795 | (xcpQ) general secretion pathway protein D [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_4 length_230083 cov_138.721829 | 7666 | 9174 | xcpR | 0/0 | 100 | 100 | NP_251793 | (xcpR) general secretion pathway protein E [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_4 length_230083 cov_138.721829 | 9174 | 10391 | xcpS | 0/0 | 100 | 100 | NP_251792 | (xcpS) general secretion pathway protein F [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_4 length_230083 cov_138.721829 | 10396 | 10842 | xcpT | 0/0 | 100 | 100 | NP_251791 | (xcpT) general secretion pathway protein G [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_4 length_230083 cov_138.721829 | 10849 | 11367 | xcpU | 0/0 | 100 | 99 | NP_251790 | (xcpU) general secretion pathway protein H [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_4 length_230083 cov_138.721829 | 11364 | 11753 | xcpV | 0/0 | 100 | 99 | NP_251789 | (xcpV) general secretion pathway protein I [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_4 length_230083 cov_138.721829 | 11750 | 12463 | xcpW | 0/0 | 100 | 99 | NP_251788 | (xcpW) general secretion pathway protein J [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_4 length_230083 cov_138.721829 | 12460 | 13461 | xcpX | 0/0 | 100 | 97 | NP_251787 | (xcpX) general secretion pathway protein K [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_4 length_230083 cov_138.721829 | 13458 | 14606 | xcpY | 0/0 | 100 | 99 | NP_251786 | (xcpY) general secretion pathway protein L [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_4 length_230083 cov_138.721829 | 14608 | 15132 | xcpZ | 0/0 | 100 | 100 | NP_251785 | (xcpZ) general secretion pathway protein M [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
Sample-05
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| NODE_16 length_134478 cov_173.657354 | 76589 | 77758 | alg44 | 0/0 | 100 | 100 | NP_252232 | (alg44) alginate biosynthesis protein Alg8 [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_16 length_134478 cov_173.657354 | 75022 | 76506 | alg8 | 0/0 | 100 | 100 | NP_252231 | (alg8) alginate-c5-mannuronan-epimerase AlgG [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_16 length_134478 cov_173.657354 | 88778 | 90223 | algA | 0/0 | 100 | 100 | NP_252241 | (algA) phosphomannose isomerase / guanosine 5’-diphospho-D-mannose pyrophosphorylase [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_7 length_219283 cov_210.933693 | 78344 | 79693 | algB | 0/0 | 100 | 100 | NP_254170 | (algB) two-component response regulator AlgB [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_3 length_257902 cov_194.274888 | 210644 | 212035 | algC | 0/0 | 100 | 100 | NP_254009 | (algC) phosphomannomutase AlgC [Alginate biosynthesis (CVF522)] [Pseudomonas aeruginosa PAO1] |
| NODE_16 length_134478 cov_173.657354 | 73572 | 74882 | algD | 0/0 | 100 | 100 | NP_252230 | (algD) GDP-mannose 6-dehydrogenase AlgD [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_16 length_134478 cov_173.657354 | 79196 | 80668 | algE | 0/0 | 100 | 99 | NP_252234 | (algE) alginate biosynthetic protein AlgK precursor [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_16 length_134478 cov_173.657354 | 87931 | 88581 | algF | 0/0 | 100 | 100 | NP_252240 | (algF) alginate o-acetyltransferase AlgF [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_16 length_134478 cov_173.657354 | 80689 | 82320 | algG | 0/0 | 100 | 100 | NP_252235 | (algG) outer membrane protein AlgE [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_16 length_134478 cov_173.657354 | 85106 | 86668 | algI | 0/0 | 100 | 100 | NP_252238 | (algI) alginate o-acetyltransferase AlgI [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_16 length_134478 cov_173.657354 | 86683 | 87858 | algJ | 0/0 | 100 | 100 | NP_252239 | (algJ) alginate o-acetyltransferase AlgJ [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_16 length_134478 cov_173.657354 | 77772 | 79199 | algK | 0/0 | 100 | 100 | NP_252233 | (algK) alginate biosynthesis protein Alg44 [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_16 length_134478 cov_173.657354 | 83761 | 84864 | algL | 0/0 | 100 | 100 | NP_252237 | (algL) poly(beta-d-mannuronate) lyase precursor AlgL [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_3 length_257902 cov_194.274888 | 133282 | 134340 | algP/algR3 | 0/0 | 100 | 99 | NP_253940 | (algP/algR3) alginate regulatory protein AlgP [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_3 length_257902 cov_194.274888 | 135157 | 135639 | algQ | 0/0 | 100 | 100 | NP_253942 | (algQ) Alginate regulatory protein AlgQ [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_3 length_257902 cov_194.274888 | 140784 | 141530 | algR | 0/0 | 100 | 100 | NP_253948 | (algR) alginate biosynthesis regulatory protein AlgR [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_13 length_164476 cov_179.124472 | 60568 | 61149 | algU | 0/0 | 100 | 100 | NP_249453 | (algU) alginate biosynthesis protein AlgZ/FimS [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_8 length_217256 cov_185.098463 | 185668 | 186837 | algW | 0/0 | 100 | 100 | NP_253136 | (algW) AlgW protein [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| NODE_16 length_134478 cov_173.657354 | 82333 | 83757 | algX | 0/0 | 100 | 100 | NP_252236 | (algX) alginate biosynthesis protein AlgX [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_3 length_257902 cov_194.274888 | 141535 | 142611 | algZ | 0/0 | 100 | 100 | NP_253949 | (algZ) sigma factor AlgU [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_46 length_37830 cov_161.339311 | 13413 | 14852 | aprA | 0/0 | 100 | 100 | NP_249940 | (aprA) alkaline metalloproteinase precursor [Alkaline protease (VF0090)] [Pseudomonas aeruginosa PAO1] |
| NODE_12 length_179690 cov_165.867849 | 65374 | 72810 | chpA | 1/18 | 100 | 99 | NP_249104 | (chpA) still frameshift probable component of chemotactic signal transduction system [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_12 length_179690 cov_165.867849 | 72803 | 73834 | chpB | 0/0 | 100 | 99 | NP_249105 | (chpB) probable methylesterase [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_12 length_179690 cov_165.867849 | 73831 | 74337 | chpC | 0/0 | 100 | 99 | NP_249106 | (chpC) probable chemotaxis protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_12 length_179690 cov_165.867849 | 74345 | 75139 | chpD | 0/0 | 100 | 99 | NP_249107 | (chpD) probable transcriptional regulator [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_12 length_179690 cov_165.867849 | 75216 | 75827 | chpE | 0/0 | 100 | 100 | NP_249108 | (chpE) probable chemotaxis protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_19 length_128745 cov_193.824789 | 116702 | 119410 | clpV1 | 0/0 | 100 | 100 | NP_248780 | (clpV1) type VI secretion system AAA+ family ATPase [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_64 length_9784 cov_172.870815 | 2581 | 3930 | dotU1 | 0/0 | 100 | 100 | NP_248768 | (dotU1) type VI secretion system protein DotU [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_181757 cov_177.513606 | 99429 | 100790 | exoS | 0/0 | 100 | 99 | NP_252530 | (exoS) type III secretion system effector ExoS ADP ribosyltransferase activity and GTPase-activating protein activity [ExoS (VF0096)] [Pseudomonas aeruginosa PAO1] |
| NODE_45 length_41304 cov_189.001431 | 28878 | 30251 | exoT | 0/0 | 100 | 99 | NP_248734 | (exoT) type III secretion system effector ExoT ADP ribosyltransferase activity and GTPase-activating protein activity [ExoT (VF0097)] [Pseudomonas aeruginosa PAO1] |
| NODE_18 length_130273 cov_221.007865 | 83440 | 84576 | exoY | 0/0 | 100 | 100 | NP_250881 | (exoY) type III secretion system effector ExoY adenylate cyclase [ExoY (VF0099)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_333250 cov_193.426976 | 307922 | 308758 | exsA | 0/0 | 100 | 100 | NP_250404 | (exsA) type III secretion system regulatory protein ExsA [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_333250 cov_193.426976 | 307211 | 307624 | exsB | 0/0 | 100 | 100 | NP_250403 | (exsB) type III secretion system piolitin ExsB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_333250 cov_193.426976 | 306511 | 306948 | exsC | 0/0 | 100 | 100 | NP_250401 | (exsC) type III secretion system regulatory protein ExsC [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_333250 cov_193.426976 | 308856 | 309686 | exsD | 0/0 | 100 | 99 | NP_250405 | (exsD) type III secretion system regulatory protein ExsD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_333250 cov_193.426976 | 306957 | 307202 | exsE | 0/0 | 100 | 99 | NP_250402 | (exsE) type III secretion system regulatory protein ExsE [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_17 length_133482 cov_206.365466 | 89382 | 89891 | fimT | 0/0 | 100 | 100 | NP_253239 | (fimT) type 4 fimbrial biogenesis protein FimT [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_17 length_133482 cov_206.365466 | 88770 | 89276 | fimU | 0/0 | 100 | 100 | NP_253240 | (fimU) type 4 fimbrial biogenesis protein FimU [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_35 length_70587 cov_182.970798 | 63467 | 66226 | fimV | 0/0 | 100 | 100 | NP_251805 | (fimV) putative Type IV pili related protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_23 length_99672 cov_183.039861 | 41778 | 42620 | fleN | 0/0 | 100 | 100 | NP_250145 | (fleN) flagellar synthesis regulator FleN [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_4 length_251871 cov_187.455098 | 196113 | 197585 | fleQ | 0/0 | 100 | 99 | NP_249788 | (fleQ) transcriptional regulator FleQ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_4 length_251871 cov_187.455098 | 198911 | 200332 | fleR | 0/0 | 100 | 99 | NP_249790 | (fleR) two-component response regulator [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_4 length_251871 cov_187.455098 | 197698 | 198906 | fleS | 0/0 | 100 | 99 | NP_249789 | (fleS) two-component sensor [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_5 length_242553 cov_173.306105 | 56959 | 57657 | flgA | 0/0 | 100 | 100 | NP_252040 | (flgA) flagellar basal body P-ring biosynthesis protein FlgA [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_4 length_251871 cov_187.455098 | 163868 | 164275 | flgB | 0/0 | 100 | 100 | NP_249768 | (flgB) flagellar basal body rod protein FlgB [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_4 length_251871 cov_187.455098 | 164281 | 164721 | flgC | 0/0 | 100 | 100 | NP_249769 | (flgC) flagellar basal-body rod protein FlgC [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_4 length_251871 cov_187.455098 | 164734 | 165447 | flgD | 0/0 | 100 | 100 | NP_249770 | (flgD) flagellar basal-body rod modification protein FlgD [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_4 length_251871 cov_187.455098 | 165475 | 166863 | flgE | 0/0 | 100 | 100 | NP_249771 | (flgE) flagellar hook protein FlgE [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_4 length_251871 cov_187.455098 | 167081 | 167830 | flgF | 0/0 | 100 | 100 | NP_249772 | (flgF) flagellar basal-body rod protein FlgF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_4 length_251871 cov_187.455098 | 167877 | 168662 | flgG | 0/0 | 100 | 100 | NP_249773 | (flgG) flagellar basal-body rod protein FlgG [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_4 length_251871 cov_187.455098 | 168708 | 169403 | flgH | 0/0 | 100 | 100 | NP_249774 | (flgH) flagellar L-ring protein precursor FlgH [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_4 length_251871 cov_187.455098 | 169415 | 170524 | flgI | 0/0 | 100 | 100 | NP_249775 | (flgI) flagellar P-ring protein precursor FlgI [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_4 length_251871 cov_187.455098 | 170535 | 171737 | flgJ | 0/0 | 100 | 100 | NP_249776 | (flgJ) flagellar rod assembly protein/muramidase FlgJ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_5 length_242553 cov_173.306105 | 56491 | 56814 | flgM | 0/0 | 100 | 100 | NP_252041 | (flgM) negative regulator of flagellin synthesis [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_5 length_242553 cov_173.306105 | 55966 | 56436 | flgN | 0/0 | 100 | 100 | NP_252042 | (flgN) flagella synthesis protein FlgN [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_23 length_99672 cov_183.039861 | 38143 | 40266 | flhA | 0/0 | 100 | 100 | NP_250143 | (flhA) flagellar biosynthesis protein FlhA [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_23 length_99672 cov_183.039861 | 34160 | 35296 | flhB | 0/0 | 100 | 100 | NP_250140 | (flhB) flagellar biosynthetic protein FlhB [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_23 length_99672 cov_183.039861 | 40350 | 41639 | flhF | 0/0 | 100 | 100 | NP_250144 | (flhF) flagellar biosynthesis protein FlhF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_23 length_99672 cov_183.039861 | 42617 | 43360 | fliA | 0/0 | 100 | 100 | NP_250146 | (fliA) flagellar biosynthesis sigma factor FliA [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_4 length_251871 cov_187.455098 | 200579 | 200908 | fliE | 0/0 | 100 | 99 | NP_249791 | (fliE) flagellar hook-basal body complex protein FliE [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_4 length_251871 cov_187.455098 | 200931 | 202727 | fliF | 0/0 | 100 | 100 | NP_249792 | (fliF) flagellar M-ring protein FliF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_4 length_251871 cov_187.455098 | 202733 | 203749 | fliG | 0/0 | 100 | 100 | NP_249793 | (fliG) flagellar motor switch protein G [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_4 length_251871 cov_187.455098 | 203751 | 204557 | fliH | 0/0 | 100 | 99 | NP_249794 | (fliH) flagellar assembly protein H [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_4 length_251871 cov_187.455098 | 204547 | 205902 | fliI | 0/0 | 100 | 99 | NP_249795 | (fliI) flagellum-specific ATP synthase FliI [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_4 length_251871 cov_187.455098 | 205916 | 206359 | fliJ | 0/0 | 100 | 100 | NP_249796 | (fliJ) flagellar protein FliJ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_23 length_99672 cov_183.039861 | 28321 | 29604 | fliK | 0/0 | 100 | 98 | NP_250132 | (fliK) flagellar hook-length control protein FliK [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_23 length_99672 cov_183.039861 | 29848 | 30369 | fliL | 0/0 | 100 | 100 | NP_250133 | (fliL) flagellar basal body protein FliL [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_23 length_99672 cov_183.039861 | 30377 | 31348 | fliM | 0/0 | 100 | 100 | NP_250134 | (fliM) flagellar motor switch protein FliM [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_23 length_99672 cov_183.039861 | 31376 | 31849 | fliN | 0/0 | 100 | 100 | NP_250135 | (fliN) flagellar motor switch protein FliN [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_23 length_99672 cov_183.039861 | 31851 | 32303 | fliO | 0/0 | 100 | 100 | NP_250136 | (fliO) flagellar protein FliO [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_23 length_99672 cov_183.039861 | 32300 | 33067 | fliP | 0/0 | 100 | 100 | NP_250137 | (fliP) flagellar biosynthetic protein FliP [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_23 length_99672 cov_183.039861 | 33112 | 33381 | fliQ | 0/0 | 100 | 100 | NP_250138 | (fliQ) flagellar biosynthetic protein FliQ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_23 length_99672 cov_183.039861 | 33381 | 34157 | fliR | 0/0 | 100 | 100 | NP_250139 | (fliR) flagellar biosynthetic protein FliR [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_68 length_5269 cov_123.748652 | 1494 | 3656 | fptA | 0/0 | 100 | 99 | NP_252911 | (fptA) Fe(III)-pyochelin receptor precursor [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_19 length_128745 cov_193.824789 | 123793 | 124281 | hcp1 | 0/0 | 100 | 100 | NP_248775 | (hcp1) type VI secretion system substrate Hcp1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_19 length_128745 cov_193.824789 | 126473 | 127507 | hsiA1 | 0/0 | 100 | 99 | NP_248772 | (hsiA1) type VI secretion system hcp secretion island protein HsiA1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_19 length_128745 cov_193.824789 | 125866 | 126384 | hsiB1/vipA | 0/0 | 100 | 100 | NP_248773 | (hsiB1/vipA) type VI secretion system tubule-forming protein VipA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_19 length_128745 cov_193.824789 | 124357 | 125853 | hsiC1/vipB | 0/0 | 100 | 100 | NP_248774 | (hsiC1/vipB) type VI secretion system tubule-forming protein VipB [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_19 length_128745 cov_193.824789 | 122780 | 123625 | hsiE1 | 0/0 | 100 | 100 | NP_248776 | (hsiE1) type VI secretion system hcp secretion island protein HsiE1 interacting with HsiB1 to form a novel subcomplex of the T6SS [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_19 length_128745 cov_193.824789 | 122269 | 122778 | hsiF1 | 0/0 | 100 | 100 | NP_248777 | (hsiF1) type VI secretion system hcp secretion island protein HsiF1 a gp25-like protein but not exhibit lysozyme activity [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_19 length_128745 cov_193.824789 | 120413 | 122272 | hsiG1 | 0/0 | 100 | 100 | NP_248778 | (hsiG1) type VI secretion system hcp secretion island protein HsiG1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_19 length_128745 cov_193.824789 | 119403 | 120449 | hsiH1 | 0/0 | 100 | 100 | NP_248779 | (hsiH1) type VI secretion system hcp secretion island protein HsiH1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_64 length_9784 cov_172.870815 | 1240 | 2574 | hsiJ1 | 0/0 | 100 | 100 | NP_248769 | (hsiJ1) type VI secretion system hcp secretion island protein HsiJ1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_64 length_9784 cov_172.870815 | 4152 | 7457 | icmF1/tssM1 | 0/0 | 100 | 100 | NP_248767 | (icmF1/tssM1) type VI secretion system protein IcmF1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_10 length_190155 cov_196.020413 | 150314 | 151570 | lasA | 0/0 | 100 | 99 | NP_250562 | (lasA) LasA protease precursor [LasA (VF0088)] [Pseudomonas aeruginosa PAO1] |
| NODE_9 length_193897 cov_186.654437 | 148195 | 149691 | lasB | 0/0 | 100 | 100 | NP_252413 | (lasB) elastase LasB [LasB (VF0087)] [Pseudomonas aeruginosa PAO1] |
| NODE_23 length_99672 cov_183.039861 | 17079 | 17684 | lasI | 0/0 | 100 | 100 | NP_250123 | (lasI) autoinducer synthesis protein LasI [Quorum sensing (VF0093)] [Pseudomonas aeruginosa PAO1] |
| NODE_64 length_9784 cov_172.870815 | 760 | 1224 | lip1 | 0/0 | 100 | 100 | NP_248770 | (lip1) lipoprotein [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_53 length_27990 cov_190.747752 | 16875 | 17093 | mbtH-like | 0/0 | 100 | 100 | NP_251102 | (mbtH-like) MbtH-like protein from the pyoverdine cluster [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_50 length_33691 cov_183.599631 | 28651 | 29502 | motA | 0/0 | 100 | 99 | NP_253641 | (motA) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_50 length_33691 cov_183.599631 | 29522 | 30565 | motB | 0/0 | 100 | 99 | NP_253640 | (motB) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_23 length_99672 cov_183.039861 | 48355 | 49095 | motC | 0/0 | 100 | 100 | NP_250151 | (motC) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_23 length_99672 cov_183.039861 | 49108 | 49998 | motD | 0/0 | 100 | 100 | NP_250152 | (motD) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_16 length_134478 cov_173.657354 | 56742 | 57707 | motY | 0/0 | 100 | 100 | NP_252216 | (motY) probable outer membrane protein precursor [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_13 length_164476 cov_179.124472 | 59952 | 60536 | mucA | 0/0 | 100 | 100 | NP_249454 | (mucA) alkaline metalloproteinase precursor [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_13 length_164476 cov_179.124472 | 58993 | 59943 | mucB | 0/0 | 100 | 100 | NP_249455 | (mucB) anti-sigma factor MucA inhibitor of alg gene expression [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_13 length_164476 cov_179.124472 | 58541 | 58996 | mucC | 0/0 | 100 | 100 | NP_249456 | (mucC) negative regulator for alginate biosynthesis MucB [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_13 length_164476 cov_179.124472 | 57077 | 58501 | mucD | 0/0 | 100 | 99 | NP_249457 | (mucD) serine protease MucD precursor [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| NODE_32 length_76245 cov_163.253007 | 10367 | 10636 | mucE | 0/0 | 100 | 100 | NP_252722 | (mucE) small envelope protein MucE [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| NODE_9 length_193897 cov_186.654437 | 66725 | 68077 | mucP | 0/0 | 100 | 100 | NP_252339 | (mucP) metalloprotease protease [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| NODE_41 length_48374 cov_180.809553 | 42081 | 43511 | pchA | 0/0 | 100 | 100 | NP_252921 | (pchA) salicylate biosynthesis isochorismate synthase PchA [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_41 length_48374 cov_180.809553 | 43508 | 43813 | pchB | 0/0 | 100 | 100 | NP_252920 | (pchB) salicylate biosynthesis protein PchB [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_41 length_48374 cov_180.809553 | 43813 | 44568 | pchC | 0/0 | 100 | 100 | NP_252919 | (pchC) pyochelin biosynthetic protein PchC [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_41 length_48374 cov_180.809553 | 44565 | 46208 | pchD | 0/0 | 100 | 100 | NP_252918 | (pchD) pyochelin biosynthesis protein PchD [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_73 length_3966 cov_97.714322 | 2009 | 3058 | pchG | 0/0 | 100 | 99 | NP_252914 | (pchG) pyochelin biosynthetic protein PchG [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_73 length_3966 cov_97.714322 | 300 | 2012 | pchH | 0/0 | 100 | 99 | NP_252913 | (pchH) ABC transporter ATP-binding protein [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_41 length_48374 cov_180.809553 | 46438 | 47328 | pchR | 0/0 | 100 | 100 | NP_252917 | (pchR) transcriptional regulator PchR [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_333250 cov_193.426976 | 298720 | 298998 | pcr1 | 0/0 | 100 | 100 | NP_250390 | (pcr1) type III secretion system protein Pcr1 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_333250 cov_193.426976 | 298985 | 299356 | pcr2 | 0/0 | 100 | 99 | NP_250391 | (pcr2) type III secretion system protein Pcr2 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_333250 cov_193.426976 | 299353 | 299718 | pcr3 | 0/0 | 100 | 100 | NP_250392 | (pcr3) type III secretion system protein Pcr3 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_333250 cov_193.426976 | 299723 | 300052 | pcr4 | 0/0 | 100 | 100 | NP_250393 | (pcr4) type III secretion system protein Pcr4 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_333250 cov_193.426976 | 300049 | 302169 | pcrD | 0/0 | 100 | 100 | NP_250394 | (pcrD) type III secretion system protein PcrD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_333250 cov_193.426976 | 302628 | 302924 | pcrG | 0/0 | 100 | 100 | NP_250396 | (pcrG) type III secretion system cytoplasmic regulator PcrG [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_333250 cov_193.426976 | 303827 | 304333 | pcrH | 1/3 | 100 | 99 | NP_250398 | (pcrH) type III secretion system regulatory protein PcrH [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_333250 cov_193.426976 | 302166 | 302600 | pcrR | 0/0 | 100 | 100 | NP_250395 | (pcrR) type III secretion system regulatory protein PcrR [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_333250 cov_193.426976 | 302934 | 303818 | pcrV | 0/0 | 100 | 100 | NP_250397 | (pcrV) type III secretion system hydrophilic translocator needle tip protein PcrV [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_10 length_190155 cov_196.020413 | 189089 | 189531 | phzA1 | 0/0 | 91 | 96 | NP_252899 | (phzA1) phenazine biosynthesis protein PhzA [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| NODE_44 length_42134 cov_148.507930 | 631 | 1119 | phzA1 | 0/0 | 100 | 100 | NP_252899 | (phzA1) phenazine biosynthesis protein PhzA [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| NODE_44 length_42134 cov_148.507930 | 113 | 601 | phzB1 | 0/0 | 100 | 99 | NP_252900 | (phzB1) phenazine biosynthesis protein PhzB [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| NODE_81 length_2265 cov_296.824497 | 992 | 1615 | phzD1 | 0/0 | 100 | 99 | NP_252902 | (phzD1) phenazine biosynthesis protein PhzD isochorismatase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| NODE_45 length_41304 cov_189.001431 | 20902 | 22734 | phzH | 0/0 | 100 | 100 | NP_248741 | (phzH) phenazine-modifying enzyme [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| NODE_44 length_42134 cov_148.507930 | 1816 | 2820 | phzM | 0/0 | 100 | 99 | NP_252898 | (phzM) phenazine-specific methyltransferase PhzM (adenosylmethionine dependent methyltransferase) [Pyocyanin (VF0100)] [Pseudomonas aeruginosa PAO1] |
| NODE_77 length_2930 cov_141.651244 | 241 | 1449 | phzS | 0/0 | 100 | 99 | NP_252907 | (phzS) flavin dependent hydroxylase PhzS [Pyocyanin (VF0100)] [Pseudomonas aeruginosa PAO1] |
| NODE_17 length_133482 cov_206.365466 | 82543 | 82968 | pilE | 0/0 | 100 | 100 | NP_253246 | (pilE) type 4 fimbrial biogenesis protein PilE [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_181757 cov_177.513606 | 56811 | 57569 | pilF | 0/0 | 100 | 100 | NP_252494 | (pilF) type 4 fimbrial biogenesis protein PilF [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_12 length_179690 cov_165.867849 | 60887 | 61294 | pilG | 0/0 | 100 | 100 | NP_249099 | (pilG) twitching motility protein PilG [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_12 length_179690 cov_165.867849 | 61341 | 61706 | pilH | 0/0 | 100 | 100 | NP_249100 | (pilH) twitching motility protein PilH [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_12 length_179690 cov_165.867849 | 61757 | 62293 | pilI | 0/0 | 100 | 100 | NP_249101 | (pilI) twitching motility protein PilI [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_12 length_179690 cov_165.867849 | 62378 | 64426 | pilJ | 0/0 | 100 | 100 | NP_249102 | (pilJ) twitching motility protein PilJ [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_12 length_179690 cov_165.867849 | 64487 | 65362 | pilK | 0/0 | 100 | 100 | NP_249103 | (pilK) methyltransferase PilK [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_21 length_108954 cov_193.700497 | 101021 | 102085 | pilM | 0/0 | 100 | 100 | NP_253731 | (pilM) type IV pilus inner membrane platform protein PilM [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_21 length_108954 cov_193.700497 | 102085 | 102681 | pilN | 0/0 | 100 | 100 | NP_253730 | (pilN) type IV pilus inner membrane platform protein PilN [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_21 length_108954 cov_193.700497 | 102678 | 103301 | pilO | 0/0 | 100 | 100 | NP_253729 | (pilO) type IV pilus inner membrane platform protein PilO [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_21 length_108954 cov_193.700497 | 103298 | 103822 | pilP | 0/0 | 100 | 100 | NP_253728 | (pilP) type IV pilus biogenesis protein PilP [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_21 length_108954 cov_193.700497 | 103876 | 106020 | pilQ | 0/0 | 100 | 97 | NP_253727 | (pilQ) type 4 fimbrial biogenesis protein PilQ [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_17 length_133482 cov_206.365466 | 91166 | 92503 | pilR | 0/0 | 100 | 100 | NP_253237 | (pilR) two-component response regulator PilR [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_17 length_133482 cov_206.365466 | 92518 | 94106 | pilS | 1/4 | 100 | 99 | NP_253236 | (pilS) two-component sensor PilS [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_12 length_179690 cov_165.867849 | 47817 | 48851 | pilT | 0/0 | 100 | 100 | NP_249086 | (pilT) twitching motility protein PilT [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_12 length_179690 cov_165.867849 | 49029 | 50177 | pilU | 0/0 | 100 | 100 | NP_249087 | (pilU) twitching motility protein PilU [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_17 length_133482 cov_206.365466 | 88222 | 88779 | pilV | 0/0 | 100 | 100 | NP_253241 | (pilV) type IV pilus biogenesis protein PilV [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_17 length_133482 cov_206.365466 | 87401 | 88225 | pilW | 0/0 | 100 | 100 | NP_253242 | (pilW) type IV fimbrial biogenesis protein PilW [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_17 length_133482 cov_206.365466 | 86817 | 87404 | pilX | 0/0 | 100 | 100 | NP_253243 | (pilX) type 4 fimbrial biogenesis protein PilX [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_17 length_133482 cov_206.365466 | 83314 | 86805 | pilY1 | 10/30 | 100 | 92 | NP_253244 | (pilY1) type 4 fimbrial biogenesis protein PilY1 [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_17 length_133482 cov_206.365466 | 82965 | 83312 | pilY2 | 0/0 | 100 | 100 | NP_253245 | (pilY2) type 4 fimbrial biogenesis protein PilY2 [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_31 length_77653 cov_184.014708 | 37350 | 39542 | plcH | 0/0 | 100 | 100 | NP_249535 | (plcH) hemolytic phospholipase C precursor [PLC (VF0092)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_333250 cov_193.426976 | 304314 | 305486 | popB | 0/0 | 100 | 99 | NP_250399 | (popB) type III secretion system hydrophobic translocator pore protein PopB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_333250 cov_193.426976 | 305498 | 306385 | popD | 0/0 | 100 | 100 | NP_250400 | (popD) type III secretion system hydrophobic translocator pore protein PopD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_333250 cov_193.426976 | 297873 | 298739 | popN | 0/0 | 100 | 99 | NP_250389 | (popN) type III secretion system outer membrane protein PopN [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_64 length_9784 cov_172.870815 | 8144 | 8872 | pppA | 0/0 | 100 | 100 | NP_248765 | (pppA) Pseudomonas protein phosphatase PppA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_333250 cov_193.426976 | 309720 | 310142 | pscB | 0/0 | 100 | 100 | NP_250406 | (pscB) type III secretion system protein PscB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_333250 cov_193.426976 | 310142 | 311944 | pscC | 0/0 | 100 | 100 | NP_250407 | (pscC) type III secretion system secretin PscC [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_333250 cov_193.426976 | 311946 | 313244 | pscD | 0/0 | 100 | 100 | NP_250408 | (pscD) type III secretion system basal body protein PscD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_333250 cov_193.426976 | 313207 | 313410 | pscE | 0/0 | 100 | 98 | NP_250409 | (pscE) type III secretion system cochaperone PscE for PscG [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_333250 cov_193.426976 | 313413 | 313670 | pscF | 0/0 | 100 | 100 | NP_250410 | (pscF) type III secretion system needle filament protein PscF [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_333250 cov_193.426976 | 313673 | 314020 | pscG | 0/0 | 100 | 100 | NP_250411 | (pscG) type III secretion system chaperone PscG for PscF [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_333250 cov_193.426976 | 314017 | 314448 | pscH | 0/0 | 100 | 100 | NP_250412 | (pscH) type III secretion system protein PscH [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_333250 cov_193.426976 | 314448 | 314786 | pscI | 0/0 | 100 | 100 | NP_250413 | (pscI) type III secretion system inner rod protein PscI [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_333250 cov_193.426976 | 314783 | 315529 | pscJ | 0/0 | 100 | 100 | NP_250414 | (pscJ) type III secretion system inner MS ring protein [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_333250 cov_193.426976 | 315538 | 316158 | pscK | 1/6 | 99 | 98 | NP_250415 | (pscK) type III secretion system protein PscK [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_333250 cov_193.426976 | 316137 | 316781 | pscL | 0/0 | 100 | 99 | NP_250416 | (pscL) type III secretion systemt protein PscL [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_333250 cov_193.426976 | 296360 | 297682 | pscN | 0/0 | 100 | 99 | NP_250388 | (pscN) type III secretion system ATPase PscN [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_333250 cov_193.426976 | 295887 | 296363 | pscO | 0/0 | 100 | 100 | NP_250387 | (pscO) type III secretion system protein PscO [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_333250 cov_193.426976 | 294790 | 295899 | pscP | 0/0 | 100 | 98 | NP_250386 | (pscP) type III secretion system protein PscP [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_333250 cov_193.426976 | 293864 | 294793 | pscQ | 0/0 | 100 | 99 | NP_250385 | (pscQ) type III secretion system protein PscQ [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_333250 cov_193.426976 | 293214 | 293867 | pscR | 0/0 | 100 | 100 | NP_250384 | (pscR) type III secretion system protein PscR [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_333250 cov_193.426976 | 292945 | 293211 | pscS | 0/0 | 100 | 100 | NP_250383 | (pscS) type III secretion system protein PscS [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_333250 cov_193.426976 | 292160 | 292948 | pscT | 0/0 | 100 | 99 | NP_250382 | (pscT) type III secretion system protein PscT [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_333250 cov_193.426976 | 291114 | 292163 | pscU | 0/0 | 100 | 100 | NP_250381 | (pscU) type III secretion system protein PscU [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_33 length_73258 cov_178.545387 | 37661 | 38599 | ptxR | 0/0 | 100 | 100 | NP_250948 | (ptxR) transcriptional regulator PtxR [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_33 length_73258 cov_178.545387 | 33316 | 34302 | pvcA | 0/0 | 100 | 100 | NP_250944 | (pvcA) paerucumarin biosynthesis protein PvcA [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_33 length_73258 cov_178.545387 | 34320 | 35195 | pvcB | 0/0 | 100 | 99 | NP_250945 | (pvcB) paerucumarin biosynthesis protein PvcB [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_33 length_73258 cov_178.545387 | 35247 | 36749 | pvcC | 0/0 | 100 | 99 | NP_250946 | (pvcC) paerucumarin biosynthesis protein PvcC [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_33 length_73258 cov_178.545387 | 36742 | 37389 | pvcD | 0/0 | 100 | 100 | NP_250947 | (pvcD) paerucumarin biosynthesis protein PvcD [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_29 length_78408 cov_186.013864 | 23771 | 25102 | pvdA | 0/0 | 100 | 100 | NP_251076 | (pvdA) L-ornithine N5-oxygenase PvdA [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1] |
| NODE_29 length_78408 cov_186.013864 | 10984 | 11804 | pvdF | 0/0 | 99 | 90 | NP_251086 | (pvdF) pyoverdine synthetase F [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_56 length_26067 cov_171.130435 | 16417 | 17181 | pvdG | 0/0 | 100 | 100 | NP_251115 | (pvdG) pyoverdine biosynthesis protein PvdG [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_53 length_27990 cov_190.747752 | 17171 | 18580 | pvdH | 0/0 | 100 | 99 | NP_251103 | (pvdH) diaminobutyrate-2-oxoglutarate aminotransferase PvdH [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_56 length_26067 cov_171.130435 | 3319 | 16344 | pvdL | 1/3 | 100 | 99 | NP_251114 | (pvdL) peptide synthase PvdL [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_29 length_78408 cov_186.013864 | 12755 | 14032 | pvdN | 4/8 | 99 | 93 | NP_251084 | (pvdN) pyoverdine biosynthesis protein PvdN [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_29 length_78408 cov_186.013864 | 11872 | 12726 | pvdO | 0/0 | 100 | 97 | NP_251085 | (pvdO) pyoverdine biosynthesis protein PvdO [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_29 length_78408 cov_186.013864 | 25225 | 27513 | pvdQ | 0/0 | 100 | 99 | NP_251075 | (pvdQ) 3-oxo-C12-homoserine lactone acylase PvdQ [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_56 length_26067 cov_171.130435 | 17824 | 18387 | pvdS | 0/0 | 100 | 100 | NP_251116 | (pvdS) extracytoplasmic-function sigma-70 factor [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1] |
| NODE_16 length_134478 cov_173.657354 | 26559 | 27446 | rhlA | 0/0 | 100 | 99 | NP_252169 | (rhlA) rhamnosyltransferase chain A [Rhamnolipid (VF0089)] [Pseudomonas aeruginosa PAO1] |
| NODE_16 length_134478 cov_173.657354 | 25213 | 26493 | rhlB | 0/0 | 100 | 99 | NP_252168 | (rhlB) rhamnosyltransferase chain B [Rhamnolipid (VF0089)] [Pseudomonas aeruginosa PAO1] |
| NODE_4 length_251871 cov_187.455098 | 230624 | 231601 | rhlC | 0/0 | 100 | 100 | NP_249821 | (rhlC) rhamnosyltransferase 2 [Rhamnolipid biosynthesis (CVF524)] [Pseudomonas aeruginosa PAO1] |
| NODE_16 length_134478 cov_173.657354 | 23578 | 24183 | rhlI | 0/0 | 100 | 98 | NP_252166 | (rhlI) autoinducer synthesis protein RhlL [Quorum sensing (VF0093)] [Pseudomonas aeruginosa PAO1] |
| NODE_64 length_9784 cov_172.870815 | 7454 | 8134 | tagF/pppB | 0/0 | 100 | 100 | NP_248766 | (tagF/pppB) Pseudomonas protein phosphatase PppB [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_45 length_41304 cov_189.001431 | 5719 | 6633 | tagQ | 0/0 | 100 | 100 | NP_248760 | (tagQ) type VI secretiona ssociated protein TagQ outer membrane lipoprotein [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| NODE_45 length_41304 cov_189.001431 | 3945 | 5657 | tagR | 0/0 | 100 | 100 | NP_248761 | (tagR) type IV secretion associated protein TagR positively regulates PpkA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_45 length_41304 cov_189.001431 | 2753 | 3952 | tagS | 0/0 | 100 | 100 | NP_248762 | (tagS) type IV secretion associated protein TagS forming a stable inner membrane complex with TagT [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_45 length_41304 cov_189.001431 | 2034 | 2753 | tagT | 0/0 | 100 | 99 | NP_248763 | (tagT) type six secretion associated protein TagT ATP-binding component of ABC transporter [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_4 length_251871 cov_187.455098 | 249113 | 251028 | toxA | 0/0 | 100 | 99 | NP_249839 | (toxA) exotoxin A precursor [ExoA (VF0086)] [Pseudomonas aeruginosa PAO1] |
| NODE_10 length_190155 cov_196.020413 | 121499 | 121963 | tse1 | 0/0 | 100 | 100 | NP_250535 | (tse1) type VI secretion system effector Tse1 peptidoglycanhydrolase [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_361471 cov_162.916764 | 282524 | 283000 | tse2 | 0/0 | 100 | 100 | NP_251392 | (tse2) type VI secretion system effector Tse2 [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| NODE_16 length_134478 cov_173.657354 | 32716 | 33942 | tse3 | 0/0 | 100 | 100 | NP_252174 | (tse3) type VI secretion system effector Tse3 glycoside hydrolase [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| NODE_19 length_128745 cov_193.824789 | 114724 | 116655 | vgrG1a | 0/0 | 100 | 100 | NP_248781 | (vgrG1a) type VI secretion system substrate VgrG1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_19 length_128745 cov_193.824789 | 110107 | 112332 | vgrG1b | 0/0 | 100 | 99 | NP_248785 | (vgrG1b) type VI secretion system substrate VgrG1b [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| NODE_27 length_86577 cov_190.531353 | 70006 | 71283 | waaA | 0/0 | 100 | 100 | NP_253675 | (waaA) lipopolysaccharide core biosynthesis protein WaaP [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| NODE_27 length_86577 cov_190.531353 | 41913 | 42980 | waaC | 0/0 | 100 | 100 | NP_253698 | (waaC) 3-deoxy-D-manno-octulosonic-acid (KDO) transferase [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| NODE_27 length_86577 cov_190.531353 | 40879 | 41916 | waaF | 0/0 | 100 | 100 | NP_253699 | (waaF) heptosyltransferase I [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| NODE_27 length_86577 cov_190.531353 | 42977 | 44098 | waaG | 0/0 | 100 | 100 | NP_253697 | (waaG) B-band O-antigen polymerase [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| NODE_27 length_86577 cov_190.531353 | 44095 | 44901 | waaP | 0/0 | 100 | 100 | NP_253696 | (waaP) UDP-glucose:(heptosyl) LPS alpha 13-glucosyltransferase WaaG [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| NODE_25 length_92266 cov_205.645543 | 62766 | 63638 | xcpA/pilD | 0/0 | 100 | 99 | NP_253218 | (xcpA/pilD) type 4 prepilin peptidase PilD [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_228887 cov_176.792894 | 6739 | 7446 | xcpP | 0/0 | 100 | 100 | NP_251794 | (xcpP) secretion protein XcpP [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_228887 cov_176.792894 | 4758 | 6734 | xcpQ | 0/0 | 100 | 100 | NP_251795 | (xcpQ) general secretion pathway protein D [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_228887 cov_176.792894 | 7666 | 9174 | xcpR | 0/0 | 100 | 99 | NP_251793 | (xcpR) general secretion pathway protein E [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_228887 cov_176.792894 | 9174 | 10391 | xcpS | 0/0 | 100 | 100 | NP_251792 | (xcpS) general secretion pathway protein F [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_228887 cov_176.792894 | 10396 | 10842 | xcpT | 0/0 | 100 | 100 | NP_251791 | (xcpT) general secretion pathway protein G [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_228887 cov_176.792894 | 10849 | 11367 | xcpU | 0/0 | 100 | 100 | NP_251790 | (xcpU) general secretion pathway protein H [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_228887 cov_176.792894 | 11364 | 11753 | xcpV | 0/0 | 100 | 99 | NP_251789 | (xcpV) general secretion pathway protein I [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_228887 cov_176.792894 | 11750 | 12463 | xcpW | 0/0 | 100 | 100 | NP_251788 | (xcpW) general secretion pathway protein J [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_228887 cov_176.792894 | 12460 | 13461 | xcpX | 0/0 | 100 | 100 | NP_251787 | (xcpX) general secretion pathway protein K [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_228887 cov_176.792894 | 13458 | 14606 | xcpY | 0/0 | 100 | 100 | NP_251786 | (xcpY) general secretion pathway protein L [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_228887 cov_176.792894 | 14608 | 15132 | xcpZ | 0/0 | 100 | 99 | NP_251785 | (xcpZ) general secretion pathway protein M [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
Sample-06
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| NODE_24 length_122074 cov_129.057026 | 25465 | 26634 | alg44 | 0/0 | 100 | 100 | NP_252232 | (alg44) alginate biosynthesis protein Alg8 [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_24 length_122074 cov_129.057026 | 26717 | 28201 | alg8 | 0/0 | 100 | 100 | NP_252231 | (alg8) alginate-c5-mannuronan-epimerase AlgG [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_24 length_122074 cov_129.057026 | 13012 | 14457 | algA | 0/0 | 100 | 99 | NP_252241 | (algA) phosphomannose isomerase / guanosine 5’-diphospho-D-mannose pyrophosphorylase [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_14 length_234828 cov_161.179062 | 154252 | 155601 | algB | 0/0 | 100 | 100 | NP_254170 | (algB) two-component response regulator AlgB [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_36 length_87345 cov_147.550293 | 26858 | 28249 | algC | 0/0 | 100 | 100 | NP_254009 | (algC) phosphomannomutase AlgC [Alginate biosynthesis (CVF522)] [Pseudomonas aeruginosa PAO1] |
| NODE_24 length_122074 cov_129.057026 | 28341 | 29651 | algD | 0/0 | 100 | 100 | NP_252230 | (algD) GDP-mannose 6-dehydrogenase AlgD [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_24 length_122074 cov_129.057026 | 22555 | 24027 | algE | 0/0 | 100 | 100 | NP_252234 | (algE) alginate biosynthetic protein AlgK precursor [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_24 length_122074 cov_129.057026 | 14654 | 15304 | algF | 0/0 | 100 | 100 | NP_252240 | (algF) alginate o-acetyltransferase AlgF [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_24 length_122074 cov_129.057026 | 20903 | 22534 | algG | 0/0 | 100 | 100 | NP_252235 | (algG) outer membrane protein AlgE [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_24 length_122074 cov_129.057026 | 16567 | 18129 | algI | 0/0 | 100 | 100 | NP_252238 | (algI) alginate o-acetyltransferase AlgI [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_24 length_122074 cov_129.057026 | 15377 | 16552 | algJ | 0/0 | 100 | 100 | NP_252239 | (algJ) alginate o-acetyltransferase AlgJ [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_24 length_122074 cov_129.057026 | 24024 | 25451 | algK | 0/0 | 100 | 100 | NP_252233 | (algK) alginate biosynthesis protein Alg44 [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_24 length_122074 cov_129.057026 | 18359 | 19462 | algL | 0/0 | 100 | 100 | NP_252237 | (algL) poly(beta-d-mannuronate) lyase precursor AlgL [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_21 length_151247 cov_144.779665 | 133320 | 134378 | algP/algR3 | 0/0 | 100 | 100 | NP_253940 | (algP/algR3) alginate regulatory protein AlgP [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_21 length_151247 cov_144.779665 | 135195 | 135677 | algQ | 0/0 | 100 | 100 | NP_253942 | (algQ) Alginate regulatory protein AlgQ [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_21 length_151247 cov_144.779665 | 140822 | 141568 | algR | 0/0 | 100 | 100 | NP_253948 | (algR) alginate biosynthesis regulatory protein AlgR [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_30 length_101367 cov_134.001224 | 40205 | 40786 | algU | 0/0 | 100 | 100 | NP_249453 | (algU) alginate biosynthesis protein AlgZ/FimS [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_16 length_217449 cov_135.590370 | 30393 | 31562 | algW | 0/0 | 100 | 100 | NP_253136 | (algW) AlgW protein [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| NODE_24 length_122074 cov_129.057026 | 19466 | 20890 | algX | 0/0 | 100 | 100 | NP_252236 | (algX) alginate biosynthesis protein AlgX [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_21 length_151247 cov_144.779665 | 141573 | 142649 | algZ | 0/0 | 100 | 100 | NP_253949 | (algZ) sigma factor AlgU [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_69 length_33424 cov_119.386362 | 13417 | 14856 | aprA | 0/0 | 100 | 100 | NP_249940 | (aprA) alkaline metalloproteinase precursor [Alkaline protease (VF0090)] [Pseudomonas aeruginosa PAO1] |
| NODE_19 length_166874 cov_15.833780 | 9208 | 9753 | bslA/yuaB | 0/0 | 100 | 99 | NP_390986 | (bslA/yuaB) hydrophobin BslA [BslA (VF0411)] [Bacillus subtilis subsp. subtilis str. 168] |
| NODE_8 length_315670 cov_146.041731 | 242973 | 250391 | chpA | 0/0 | 100 | 100 | NP_249104 | (chpA) still frameshift probable component of chemotactic signal transduction system [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_8 length_315670 cov_146.041731 | 241949 | 242980 | chpB | 0/0 | 100 | 100 | NP_249105 | (chpB) probable methylesterase [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_8 length_315670 cov_146.041731 | 241446 | 241952 | chpC | 0/0 | 100 | 99 | NP_249106 | (chpC) probable chemotaxis protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_8 length_315670 cov_146.041731 | 240644 | 241438 | chpD | 0/0 | 100 | 99 | NP_249107 | (chpD) probable transcriptional regulator [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_8 length_315670 cov_146.041731 | 239957 | 240568 | chpE | 0/0 | 100 | 99 | NP_249108 | (chpE) probable chemotaxis protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_23 length_128975 cov_152.386158 | 9336 | 12044 | clpV1 | 0/0 | 100 | 100 | NP_248780 | (clpV1) type VI secretion system AAA+ family ATPase [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_96 length_9827 cov_135.324410 | 5897 | 7246 | dotU1 | 0/0 | 100 | 100 | NP_248768 | (dotU1) type VI secretion system protein DotU [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_66 length_35522 cov_142.840372 | 22265 | 23626 | exoS | 0/0 | 100 | 99 | NP_252530 | (exoS) type III secretion system effector ExoS ADP ribosyltransferase activity and GTPase-activating protein activity [ExoS (VF0096)] [Pseudomonas aeruginosa PAO1] |
| NODE_60 length_44334 cov_162.715909 | 14098 | 15471 | exoT | 0/0 | 100 | 99 | NP_248734 | (exoT) type III secretion system effector ExoT ADP ribosyltransferase activity and GTPase-activating protein activity [ExoT (VF0097)] [Pseudomonas aeruginosa PAO1] |
| NODE_28 length_115989 cov_126.071925 | 84481 | 85617 | exoY | 0/0 | 100 | 100 | NP_250881 | (exoY) type III secretion system effector ExoY adenylate cyclase [ExoY (VF0099)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_376931 cov_129.734428 | 210772 | 211608 | exsA | 0/0 | 100 | 100 | NP_250404 | (exsA) type III secretion system regulatory protein ExsA [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_376931 cov_129.734428 | 211906 | 212319 | exsB | 0/0 | 100 | 98 | NP_250403 | (exsB) type III secretion system piolitin ExsB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_376931 cov_129.734428 | 212582 | 213019 | exsC | 0/0 | 100 | 99 | NP_250401 | (exsC) type III secretion system regulatory protein ExsC [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_376931 cov_129.734428 | 209844 | 210674 | exsD | 0/0 | 100 | 99 | NP_250405 | (exsD) type III secretion system regulatory protein ExsD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_376931 cov_129.734428 | 212328 | 212573 | exsE | 0/0 | 100 | 97 | NP_250402 | (exsE) type III secretion system regulatory protein ExsE [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_27 length_116437 cov_147.341054 | 24466 | 24975 | fimT | 0/0 | 100 | 100 | NP_253239 | (fimT) type 4 fimbrial biogenesis protein FimT [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_27 length_116437 cov_147.341054 | 25081 | 25587 | fimU | 0/0 | 100 | 100 | NP_253240 | (fimU) type 4 fimbrial biogenesis protein FimU [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_79 length_23709 cov_126.511256 | 16593 | 19352 | fimV | 0/0 | 100 | 100 | NP_251805 | (fimV) putative Type IV pili related protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_18 length_181408 cov_134.053405 | 121808 | 122650 | fleN | 0/0 | 100 | 100 | NP_250145 | (fleN) flagellar synthesis regulator FleN [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_7 length_337452 cov_135.413362 | 145243 | 146715 | fleQ | 0/0 | 100 | 99 | NP_249788 | (fleQ) transcriptional regulator FleQ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_7 length_337452 cov_135.413362 | 142496 | 143917 | fleR | 0/0 | 100 | 99 | NP_249790 | (fleR) two-component response regulator [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_7 length_337452 cov_135.413362 | 143922 | 145130 | fleS | 0/0 | 100 | 99 | NP_249789 | (fleS) two-component sensor [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_17 length_203356 cov_132.686879 | 185095 | 185793 | flgA | 0/0 | 100 | 100 | NP_252040 | (flgA) flagellar basal body P-ring biosynthesis protein FlgA [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_7 length_337452 cov_135.413362 | 173145 | 173552 | flgB | 0/0 | 100 | 100 | NP_249768 | (flgB) flagellar basal body rod protein FlgB [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_7 length_337452 cov_135.413362 | 172699 | 173139 | flgC | 0/0 | 100 | 100 | NP_249769 | (flgC) flagellar basal-body rod protein FlgC [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_7 length_337452 cov_135.413362 | 171973 | 172686 | flgD | 0/0 | 100 | 100 | NP_249770 | (flgD) flagellar basal-body rod modification protein FlgD [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_7 length_337452 cov_135.413362 | 170557 | 171945 | flgE | 0/0 | 100 | 100 | NP_249771 | (flgE) flagellar hook protein FlgE [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_7 length_337452 cov_135.413362 | 169590 | 170339 | flgF | 0/0 | 100 | 100 | NP_249772 | (flgF) flagellar basal-body rod protein FlgF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_7 length_337452 cov_135.413362 | 168758 | 169543 | flgG | 0/0 | 100 | 100 | NP_249773 | (flgG) flagellar basal-body rod protein FlgG [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_7 length_337452 cov_135.413362 | 168017 | 168712 | flgH | 0/0 | 100 | 99 | NP_249774 | (flgH) flagellar L-ring protein precursor FlgH [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_7 length_337452 cov_135.413362 | 166896 | 168005 | flgI | 0/0 | 100 | 100 | NP_249775 | (flgI) flagellar P-ring protein precursor FlgI [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_7 length_337452 cov_135.413362 | 165683 | 166885 | flgJ | 0/0 | 100 | 100 | NP_249776 | (flgJ) flagellar rod assembly protein/muramidase FlgJ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_17 length_203356 cov_132.686879 | 185938 | 186261 | flgM | 0/0 | 100 | 100 | NP_252041 | (flgM) negative regulator of flagellin synthesis [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_17 length_203356 cov_132.686879 | 186316 | 186786 | flgN | 0/0 | 100 | 100 | NP_252042 | (flgN) flagella synthesis protein FlgN [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_18 length_181408 cov_134.053405 | 118173 | 120296 | flhA | 0/0 | 100 | 100 | NP_250143 | (flhA) flagellar biosynthesis protein FlhA [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_18 length_181408 cov_134.053405 | 114181 | 115317 | flhB | 0/0 | 100 | 100 | NP_250140 | (flhB) flagellar biosynthetic protein FlhB [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_18 length_181408 cov_134.053405 | 120380 | 121669 | flhF | 0/0 | 100 | 100 | NP_250144 | (flhF) flagellar biosynthesis protein FlhF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_18 length_181408 cov_134.053405 | 122647 | 123390 | fliA | 0/0 | 100 | 100 | NP_250146 | (fliA) flagellar biosynthesis sigma factor FliA [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_7 length_337452 cov_135.413362 | 141920 | 142249 | fliE | 0/0 | 100 | 100 | NP_249791 | (fliE) flagellar hook-basal body complex protein FliE [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_7 length_337452 cov_135.413362 | 140101 | 141897 | fliF | 0/0 | 100 | 100 | NP_249792 | (fliF) flagellar M-ring protein FliF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_7 length_337452 cov_135.413362 | 139079 | 140095 | fliG | 0/0 | 100 | 100 | NP_249793 | (fliG) flagellar motor switch protein G [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_7 length_337452 cov_135.413362 | 138271 | 139077 | fliH | 0/0 | 100 | 99 | NP_249794 | (fliH) flagellar assembly protein H [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_7 length_337452 cov_135.413362 | 136926 | 138281 | fliI | 0/0 | 100 | 99 | NP_249795 | (fliI) flagellum-specific ATP synthase FliI [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_7 length_337452 cov_135.413362 | 136469 | 136912 | fliJ | 0/0 | 100 | 100 | NP_249796 | (fliJ) flagellar protein FliJ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_18 length_181408 cov_134.053405 | 108342 | 109625 | fliK | 0/0 | 100 | 100 | NP_250132 | (fliK) flagellar hook-length control protein FliK [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_18 length_181408 cov_134.053405 | 109869 | 110390 | fliL | 0/0 | 100 | 100 | NP_250133 | (fliL) flagellar basal body protein FliL [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_18 length_181408 cov_134.053405 | 110398 | 111369 | fliM | 0/0 | 100 | 100 | NP_250134 | (fliM) flagellar motor switch protein FliM [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_18 length_181408 cov_134.053405 | 111397 | 111870 | fliN | 0/0 | 100 | 100 | NP_250135 | (fliN) flagellar motor switch protein FliN [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_18 length_181408 cov_134.053405 | 111872 | 112324 | fliO | 0/0 | 100 | 100 | NP_250136 | (fliO) flagellar protein FliO [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_18 length_181408 cov_134.053405 | 112321 | 113088 | fliP | 0/0 | 100 | 100 | NP_250137 | (fliP) flagellar biosynthetic protein FliP [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_18 length_181408 cov_134.053405 | 113133 | 113402 | fliQ | 0/0 | 100 | 100 | NP_250138 | (fliQ) flagellar biosynthetic protein FliQ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_18 length_181408 cov_134.053405 | 113402 | 114178 | fliR | 0/0 | 100 | 99 | NP_250139 | (fliR) flagellar biosynthetic protein FliR [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_98 length_9260 cov_108.046063 | 5484 | 7646 | fptA | 0/0 | 100 | 100 | NP_252911 | (fptA) Fe(III)-pyochelin receptor precursor [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_23 length_128975 cov_152.386158 | 4465 | 4953 | hcp1 | 0/0 | 100 | 100 | NP_248775 | (hcp1) type VI secretion system substrate Hcp1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_23 length_128975 cov_152.386158 | 1239 | 2273 | hsiA1 | 0/0 | 100 | 99 | NP_248772 | (hsiA1) type VI secretion system hcp secretion island protein HsiA1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_23 length_128975 cov_152.386158 | 2362 | 2880 | hsiB1/vipA | 0/0 | 100 | 100 | NP_248773 | (hsiB1/vipA) type VI secretion system tubule-forming protein VipA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_23 length_128975 cov_152.386158 | 2893 | 4389 | hsiC1/vipB | 0/0 | 100 | 100 | NP_248774 | (hsiC1/vipB) type VI secretion system tubule-forming protein VipB [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_23 length_128975 cov_152.386158 | 5121 | 5966 | hsiE1 | 0/0 | 100 | 100 | NP_248776 | (hsiE1) type VI secretion system hcp secretion island protein HsiE1 interacting with HsiB1 to form a novel subcomplex of the T6SS [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_23 length_128975 cov_152.386158 | 5968 | 6477 | hsiF1 | 0/0 | 100 | 100 | NP_248777 | (hsiF1) type VI secretion system hcp secretion island protein HsiF1 a gp25-like protein but not exhibit lysozyme activity [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_23 length_128975 cov_152.386158 | 6474 | 8333 | hsiG1 | 0/0 | 100 | 100 | NP_248778 | (hsiG1) type VI secretion system hcp secretion island protein HsiG1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_23 length_128975 cov_152.386158 | 8297 | 9343 | hsiH1 | 0/0 | 100 | 100 | NP_248779 | (hsiH1) type VI secretion system hcp secretion island protein HsiH1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_96 length_9827 cov_135.324410 | 7253 | 8587 | hsiJ1 | 0/0 | 100 | 99 | NP_248769 | (hsiJ1) type VI secretion system hcp secretion island protein HsiJ1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_96 length_9827 cov_135.324410 | 2367 | 5675 | icmF1/tssM1 | 1/3 | 100 | 99 | NP_248767 | (icmF1/tssM1) type VI secretion system protein IcmF1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_376931 cov_129.734428 | 34916 | 36172 | lasA | 0/0 | 100 | 99 | NP_250562 | (lasA) LasA protease precursor [LasA (VF0088)] [Pseudomonas aeruginosa PAO1] |
| NODE_10 length_301602 cov_136.380383 | 120794 | 122290 | lasB | 0/0 | 100 | 100 | NP_252413 | (lasB) elastase LasB [LasB (VF0087)] [Pseudomonas aeruginosa PAO1] |
| NODE_18 length_181408 cov_134.053405 | 97100 | 97705 | lasI | 0/0 | 100 | 100 | NP_250123 | (lasI) autoinducer synthesis protein LasI [Quorum sensing (VF0093)] [Pseudomonas aeruginosa PAO1] |
| NODE_96 length_9827 cov_135.324410 | 8603 | 9067 | lip1 | 0/0 | 100 | 100 | NP_248770 | (lip1) lipoprotein [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_43 length_66007 cov_128.124481 | 48176 | 48394 | mbtH-like | 0/0 | 100 | 100 | NP_251102 | (mbtH-like) MbtH-like protein from the pyoverdine cluster [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_68 length_33713 cov_138.736711 | 28646 | 29497 | motA | 0/0 | 100 | 100 | NP_253641 | (motA) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_68 length_33713 cov_138.736711 | 29517 | 30560 | motB | 0/0 | 100 | 100 | NP_253640 | (motB) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_18 length_181408 cov_134.053405 | 128385 | 129125 | motC | 0/0 | 100 | 100 | NP_250151 | (motC) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_18 length_181408 cov_134.053405 | 129138 | 130028 | motD | 0/0 | 100 | 100 | NP_250152 | (motD) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_24 length_122074 cov_129.057026 | 45516 | 46481 | motY | 0/0 | 100 | 100 | NP_252216 | (motY) probable outer membrane protein precursor [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_30 length_101367 cov_134.001224 | 40818 | 41391 | mucA | 1/11 | 98 | 98 | NP_249454 | (mucA) alkaline metalloproteinase precursor [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_30 length_101367 cov_134.001224 | 41400 | 42350 | mucB | 0/0 | 100 | 100 | NP_249455 | (mucB) anti-sigma factor MucA inhibitor of alg gene expression [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_30 length_101367 cov_134.001224 | 42347 | 42802 | mucC | 0/0 | 100 | 100 | NP_249456 | (mucC) negative regulator for alginate biosynthesis MucB [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_30 length_101367 cov_134.001224 | 42842 | 44266 | mucD | 0/0 | 100 | 100 | NP_249457 | (mucD) serine protease MucD precursor [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| NODE_20 length_155942 cov_136.207115 | 145126 | 145395 | mucE | 0/0 | 100 | 100 | NP_252722 | (mucE) small envelope protein MucE [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| NODE_10 length_301602 cov_136.380383 | 202395 | 203747 | mucP | 0/0 | 100 | 100 | NP_252339 | (mucP) metalloprotease protease [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| NODE_71 length_30563 cov_144.236994 | 7280 | 8710 | pchA | 0/0 | 100 | 100 | NP_252921 | (pchA) salicylate biosynthesis isochorismate synthase PchA [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_71 length_30563 cov_144.236994 | 6978 | 7283 | pchB | 0/0 | 100 | 100 | NP_252920 | (pchB) salicylate biosynthesis protein PchB [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_71 length_30563 cov_144.236994 | 6223 | 6978 | pchC | 0/0 | 100 | 100 | NP_252919 | (pchC) pyochelin biosynthetic protein PchC [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_71 length_30563 cov_144.236994 | 4583 | 6226 | pchD | 0/0 | 100 | 99 | NP_252918 | (pchD) pyochelin biosynthesis protein PchD [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_98 length_9260 cov_108.046063 | 913 | 1962 | pchG | 0/0 | 100 | 100 | NP_252914 | (pchG) pyochelin biosynthetic protein PchG [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_98 length_9260 cov_108.046063 | 1959 | 3671 | pchH | 0/0 | 100 | 99 | NP_252913 | (pchH) ABC transporter ATP-binding protein [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_98 length_9260 cov_108.046063 | 3668 | 5392 | pchI | 0/0 | 100 | 99 | NP_252912 | (pchI) ABC transporter ATP-binding protein [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_71 length_30563 cov_144.236994 | 3463 | 4353 | pchR | 0/0 | 100 | 100 | NP_252917 | (pchR) transcriptional regulator PchR [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_376931 cov_129.734428 | 220532 | 220810 | pcr1 | 0/0 | 100 | 100 | NP_250390 | (pcr1) type III secretion system protein Pcr1 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_376931 cov_129.734428 | 220174 | 220545 | pcr2 | 0/0 | 100 | 99 | NP_250391 | (pcr2) type III secretion system protein Pcr2 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_376931 cov_129.734428 | 219812 | 220177 | pcr3 | 0/0 | 100 | 99 | NP_250392 | (pcr3) type III secretion system protein Pcr3 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_376931 cov_129.734428 | 219478 | 219807 | pcr4 | 0/0 | 100 | 100 | NP_250393 | (pcr4) type III secretion system protein Pcr4 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_376931 cov_129.734428 | 217361 | 219481 | pcrD | 0/0 | 100 | 99 | NP_250394 | (pcrD) type III secretion system protein PcrD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_376931 cov_129.734428 | 216606 | 216902 | pcrG | 0/0 | 100 | 100 | NP_250396 | (pcrG) type III secretion system cytoplasmic regulator PcrG [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_376931 cov_129.734428 | 215197 | 215703 | pcrH | 1/3 | 100 | 99 | NP_250398 | (pcrH) type III secretion system regulatory protein PcrH [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_376931 cov_129.734428 | 216930 | 217364 | pcrR | 0/0 | 100 | 100 | NP_250395 | (pcrR) type III secretion system regulatory protein PcrR [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_376931 cov_129.734428 | 215712 | 216596 | pcrV | 0/0 | 100 | 99 | NP_250397 | (pcrV) type III secretion system hydrophilic translocator needle tip protein PcrV [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_56 length_53088 cov_134.026938 | 51970 | 52458 | phzA1 | 0/0 | 100 | 100 | NP_252899 | (phzA1) phenazine biosynthesis protein PhzA [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| NODE_56 length_53088 cov_134.026938 | 52488 | 52976 | phzB1 | 0/0 | 100 | 99 | NP_252900 | (phzB1) phenazine biosynthesis protein PhzB [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| NODE_122 length_1278 cov_225.552040 | 489 | 1112 | phzD1 | 0/0 | 100 | 99 | NP_252902 | (phzD1) phenazine biosynthesis protein PhzD isochorismatase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| NODE_60 length_44334 cov_162.715909 | 21614 | 23446 | phzH | 0/0 | 100 | 100 | NP_248741 | (phzH) phenazine-modifying enzyme [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| NODE_56 length_53088 cov_134.026938 | 50269 | 51273 | phzM | 0/0 | 100 | 100 | NP_252898 | (phzM) phenazine-specific methyltransferase PhzM (adenosylmethionine dependent methyltransferase) [Pyocyanin (VF0100)] [Pseudomonas aeruginosa PAO1] |
| NODE_109 length_3044 cov_130.513313 | 1538 | 2746 | phzS | 0/0 | 100 | 100 | NP_252907 | (phzS) flavin dependent hydroxylase PhzS [Pyocyanin (VF0100)] [Pseudomonas aeruginosa PAO1] |
| NODE_27 length_116437 cov_147.341054 | 31389 | 31814 | pilE | 0/0 | 100 | 100 | NP_253246 | (pilE) type 4 fimbrial biogenesis protein PilE [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_10 length_301602 cov_136.380383 | 25983 | 26741 | pilF | 0/0 | 100 | 100 | NP_252494 | (pilF) type 4 fimbrial biogenesis protein PilF [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_8 length_315670 cov_146.041731 | 254471 | 254878 | pilG | 0/0 | 100 | 100 | NP_249099 | (pilG) twitching motility protein PilG [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_8 length_315670 cov_146.041731 | 254059 | 254424 | pilH | 0/0 | 100 | 100 | NP_249100 | (pilH) twitching motility protein PilH [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_8 length_315670 cov_146.041731 | 253472 | 254008 | pilI | 0/0 | 100 | 100 | NP_249101 | (pilI) twitching motility protein PilI [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_8 length_315670 cov_146.041731 | 251339 | 253387 | pilJ | 0/0 | 100 | 100 | NP_249102 | (pilJ) twitching motility protein PilJ [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_8 length_315670 cov_146.041731 | 250403 | 251278 | pilK | 0/0 | 100 | 100 | NP_249103 | (pilK) methyltransferase PilK [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_29 length_108083 cov_143.307863 | 6868 | 7932 | pilM | 0/0 | 100 | 100 | NP_253731 | (pilM) type IV pilus inner membrane platform protein PilM [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_29 length_108083 cov_143.307863 | 6272 | 6868 | pilN | 0/0 | 100 | 100 | NP_253730 | (pilN) type IV pilus inner membrane platform protein PilN [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_29 length_108083 cov_143.307863 | 5652 | 6275 | pilO | 0/0 | 100 | 100 | NP_253729 | (pilO) type IV pilus inner membrane platform protein PilO [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_29 length_108083 cov_143.307863 | 5131 | 5655 | pilP | 0/0 | 100 | 100 | NP_253728 | (pilP) type IV pilus biogenesis protein PilP [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_29 length_108083 cov_143.307863 | 2933 | 5077 | pilQ | 0/0 | 100 | 97 | NP_253727 | (pilQ) type 4 fimbrial biogenesis protein PilQ [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_27 length_116437 cov_147.341054 | 21854 | 23191 | pilR | 0/0 | 100 | 100 | NP_253237 | (pilR) two-component response regulator PilR [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_27 length_116437 cov_147.341054 | 20247 | 21839 | pilS | 0/0 | 100 | 100 | NP_253236 | (pilS) two-component sensor PilS [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_8 length_315670 cov_146.041731 | 266914 | 267948 | pilT | 0/0 | 100 | 100 | NP_249086 | (pilT) twitching motility protein PilT [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_8 length_315670 cov_146.041731 | 265588 | 266736 | pilU | 0/0 | 100 | 100 | NP_249087 | (pilU) twitching motility protein PilU [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_27 length_116437 cov_147.341054 | 25578 | 26135 | pilV | 0/0 | 100 | 100 | NP_253241 | (pilV) type IV pilus biogenesis protein PilV [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_27 length_116437 cov_147.341054 | 26132 | 26956 | pilW | 0/0 | 100 | 100 | NP_253242 | (pilW) type IV fimbrial biogenesis protein PilW [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_27 length_116437 cov_147.341054 | 26953 | 27540 | pilX | 0/0 | 100 | 100 | NP_253243 | (pilX) type 4 fimbrial biogenesis protein PilX [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_27 length_116437 cov_147.341054 | 27552 | 31043 | pilY1 | 10/30 | 100 | 92 | NP_253244 | (pilY1) type 4 fimbrial biogenesis protein PilY1 [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_27 length_116437 cov_147.341054 | 31045 | 31392 | pilY2 | 0/0 | 100 | 100 | NP_253245 | (pilY2) type 4 fimbrial biogenesis protein PilY2 [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_35 length_91700 cov_131.561529 | 70093 | 72285 | plcH | 0/0 | 100 | 100 | NP_249535 | (plcH) hemolytic phospholipase C precursor [PLC (VF0092)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_376931 cov_129.734428 | 214044 | 215216 | popB | 0/0 | 100 | 99 | NP_250399 | (popB) type III secretion system hydrophobic translocator pore protein PopB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_376931 cov_129.734428 | 213145 | 214032 | popD | 0/0 | 100 | 100 | NP_250400 | (popD) type III secretion system hydrophobic translocator pore protein PopD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_376931 cov_129.734428 | 220791 | 221657 | popN | 0/0 | 100 | 99 | NP_250389 | (popN) type III secretion system outer membrane protein PopN [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_96 length_9827 cov_135.324410 | 952 | 1680 | pppA | 0/0 | 100 | 100 | NP_248765 | (pppA) Pseudomonas protein phosphatase PppA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_376931 cov_129.734428 | 209388 | 209810 | pscB | 0/0 | 100 | 100 | NP_250406 | (pscB) type III secretion system protein PscB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_376931 cov_129.734428 | 207586 | 209388 | pscC | 0/0 | 100 | 99 | NP_250407 | (pscC) type III secretion system secretin PscC [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_376931 cov_129.734428 | 206286 | 207584 | pscD | 0/0 | 100 | 100 | NP_250408 | (pscD) type III secretion system basal body protein PscD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_376931 cov_129.734428 | 206120 | 206323 | pscE | 0/0 | 100 | 99 | NP_250409 | (pscE) type III secretion system cochaperone PscE for PscG [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_376931 cov_129.734428 | 205860 | 206117 | pscF | 0/0 | 100 | 100 | NP_250410 | (pscF) type III secretion system needle filament protein PscF [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_376931 cov_129.734428 | 205510 | 205857 | pscG | 0/0 | 100 | 99 | NP_250411 | (pscG) type III secretion system chaperone PscG for PscF [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_376931 cov_129.734428 | 205082 | 205513 | pscH | 0/0 | 100 | 100 | NP_250412 | (pscH) type III secretion system protein PscH [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_376931 cov_129.734428 | 204744 | 205082 | pscI | 0/0 | 100 | 100 | NP_250413 | (pscI) type III secretion system inner rod protein PscI [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_376931 cov_129.734428 | 204001 | 204747 | pscJ | 0/0 | 100 | 99 | NP_250414 | (pscJ) type III secretion system inner MS ring protein [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_376931 cov_129.734428 | 203372 | 203992 | pscK | 1/6 | 99 | 98 | NP_250415 | (pscK) type III secretion system protein PscK [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_376931 cov_129.734428 | 202749 | 203393 | pscL | 0/0 | 100 | 100 | NP_250416 | (pscL) type III secretion systemt protein PscL [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_376931 cov_129.734428 | 221848 | 223170 | pscN | 0/0 | 100 | 99 | NP_250388 | (pscN) type III secretion system ATPase PscN [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_376931 cov_129.734428 | 223167 | 223643 | pscO | 0/0 | 100 | 99 | NP_250387 | (pscO) type III secretion system protein PscO [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_376931 cov_129.734428 | 223631 | 224743 | pscP | 2/15 | 99 | 97 | NP_250386 | (pscP) type III secretion system protein PscP [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_376931 cov_129.734428 | 224740 | 225669 | pscQ | 0/0 | 100 | 99 | NP_250385 | (pscQ) type III secretion system protein PscQ [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_376931 cov_129.734428 | 225666 | 226319 | pscR | 0/0 | 100 | 99 | NP_250384 | (pscR) type III secretion system protein PscR [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_376931 cov_129.734428 | 226322 | 226588 | pscS | 0/0 | 100 | 100 | NP_250383 | (pscS) type III secretion system protein PscS [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_376931 cov_129.734428 | 226585 | 227373 | pscT | 0/0 | 100 | 99 | NP_250382 | (pscT) type III secretion system protein PscT [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_376931 cov_129.734428 | 227370 | 228419 | pscU | 0/0 | 100 | 99 | NP_250381 | (pscU) type III secretion system protein PscU [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_41 length_66329 cov_127.710303 | 38690 | 39628 | ptxR | 0/0 | 100 | 100 | NP_250948 | (ptxR) transcriptional regulator PtxR [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_41 length_66329 cov_127.710303 | 34384 | 35370 | pvcA | 0/0 | 100 | 99 | NP_250944 | (pvcA) paerucumarin biosynthesis protein PvcA [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_41 length_66329 cov_127.710303 | 35388 | 36263 | pvcB | 0/0 | 100 | 100 | NP_250945 | (pvcB) paerucumarin biosynthesis protein PvcB [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_41 length_66329 cov_127.710303 | 36315 | 37817 | pvcC | 0/0 | 100 | 99 | NP_250946 | (pvcC) paerucumarin biosynthesis protein PvcC [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_41 length_66329 cov_127.710303 | 37810 | 38457 | pvcD | 0/0 | 100 | 100 | NP_250947 | (pvcD) paerucumarin biosynthesis protein PvcD [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_34 length_91708 cov_131.918783 | 66253 | 67584 | pvdA | 0/0 | 100 | 100 | NP_251076 | (pvdA) L-ornithine N5-oxygenase PvdA [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1] |
| NODE_34 length_91708 cov_131.918783 | 79551 | 80371 | pvdF | 0/0 | 99 | 90 | NP_251086 | (pvdF) pyoverdine synthetase F [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_43 length_66007 cov_128.124481 | 21271 | 22035 | pvdG | 0/0 | 100 | 99 | NP_251115 | (pvdG) pyoverdine biosynthesis protein PvdG [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_43 length_66007 cov_128.124481 | 46689 | 48098 | pvdH | 0/0 | 100 | 99 | NP_251103 | (pvdH) diaminobutyrate-2-oxoglutarate aminotransferase PvdH [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_43 length_66007 cov_128.124481 | 22109 | 35137 | pvdL | 0/0 | 100 | 99 | NP_251114 | (pvdL) peptide synthase PvdL [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_34 length_91708 cov_131.918783 | 77323 | 78600 | pvdN | 4/8 | 99 | 91 | NP_251084 | (pvdN) pyoverdine biosynthesis protein PvdN [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_34 length_91708 cov_131.918783 | 78629 | 79483 | pvdO | 0/0 | 100 | 96 | NP_251085 | (pvdO) pyoverdine biosynthesis protein PvdO [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_34 length_91708 cov_131.918783 | 63842 | 66130 | pvdQ | 0/0 | 100 | 99 | NP_251075 | (pvdQ) 3-oxo-C12-homoserine lactone acylase PvdQ [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_43 length_66007 cov_128.124481 | 20064 | 20627 | pvdS | 0/0 | 100 | 100 | NP_251116 | (pvdS) extracytoplasmic-function sigma-70 factor [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1] |
| NODE_24 length_122074 cov_129.057026 | 92280 | 93167 | rhlA | 0/0 | 100 | 99 | NP_252169 | (rhlA) rhamnosyltransferase chain A [Rhamnolipid (VF0089)] [Pseudomonas aeruginosa PAO1] |
| NODE_24 length_122074 cov_129.057026 | 93233 | 94513 | rhlB | 0/0 | 100 | 100 | NP_252168 | (rhlB) rhamnosyltransferase chain B [Rhamnolipid (VF0089)] [Pseudomonas aeruginosa PAO1] |
| NODE_7 length_337452 cov_135.413362 | 111227 | 112204 | rhlC | 0/0 | 100 | 100 | NP_249821 | (rhlC) rhamnosyltransferase 2 [Rhamnolipid biosynthesis (CVF524)] [Pseudomonas aeruginosa PAO1] |
| NODE_24 length_122074 cov_129.057026 | 95544 | 96149 | rhlI | 0/0 | 100 | 99 | NP_252166 | (rhlI) autoinducer synthesis protein RhlL [Quorum sensing (VF0093)] [Pseudomonas aeruginosa PAO1] |
| NODE_96 length_9827 cov_135.324410 | 1690 | 2370 | tagF/pppB | 0/0 | 100 | 100 | NP_248766 | (tagF/pppB) Pseudomonas protein phosphatase PppB [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_60 length_44334 cov_162.715909 | 37713 | 38627 | tagQ | 0/0 | 100 | 100 | NP_248760 | (tagQ) type VI secretiona ssociated protein TagQ outer membrane lipoprotein [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| NODE_60 length_44334 cov_162.715909 | 38689 | 40401 | tagR | 0/0 | 100 | 100 | NP_248761 | (tagR) type IV secretion associated protein TagR positively regulates PpkA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_60 length_44334 cov_162.715909 | 40394 | 41593 | tagS | 0/0 | 100 | 100 | NP_248762 | (tagS) type IV secretion associated protein TagS forming a stable inner membrane complex with TagT [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_60 length_44334 cov_162.715909 | 41593 | 42312 | tagT | 0/0 | 100 | 99 | NP_248763 | (tagT) type six secretion associated protein TagT ATP-binding component of ABC transporter [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_7 length_337452 cov_135.413362 | 91796 | 93712 | toxA | 0/0 | 100 | 99 | NP_249839 | (toxA) exotoxin A precursor [ExoA (VF0086)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_376931 cov_129.734428 | 64539 | 65003 | tse1 | 0/0 | 100 | 100 | NP_250535 | (tse1) type VI secretion system effector Tse1 peptidoglycanhydrolase [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| NODE_55 length_53579 cov_124.286139 | 34091 | 34567 | tse2 | 0/0 | 100 | 100 | NP_251392 | (tse2) type VI secretion system effector Tse2 [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| NODE_24 length_122074 cov_129.057026 | 85784 | 87010 | tse3 | 0/0 | 100 | 100 | NP_252174 | (tse3) type VI secretion system effector Tse3 glycoside hydrolase [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| NODE_23 length_128975 cov_152.386158 | 12091 | 14022 | vgrG1a | 0/0 | 100 | 100 | NP_248781 | (vgrG1a) type VI secretion system substrate VgrG1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_23 length_128975 cov_152.386158 | 16414 | 18639 | vgrG1b | 0/0 | 100 | 99 | NP_248785 | (vgrG1b) type VI secretion system substrate VgrG1b [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| NODE_38 length_84242 cov_141.686580 | 67673 | 68950 | waaA | 0/0 | 100 | 100 | NP_253675 | (waaA) lipopolysaccharide core biosynthesis protein WaaP [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| NODE_38 length_84242 cov_141.686580 | 41918 | 42985 | waaC | 0/0 | 100 | 100 | NP_253698 | (waaC) 3-deoxy-D-manno-octulosonic-acid (KDO) transferase [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| NODE_38 length_84242 cov_141.686580 | 40884 | 41921 | waaF | 0/0 | 100 | 100 | NP_253699 | (waaF) heptosyltransferase I [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| NODE_38 length_84242 cov_141.686580 | 42982 | 44103 | waaG | 0/0 | 100 | 100 | NP_253697 | (waaG) B-band O-antigen polymerase [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| NODE_38 length_84242 cov_141.686580 | 44100 | 44906 | waaP | 0/0 | 100 | 100 | NP_253696 | (waaP) UDP-glucose:(heptosyl) LPS alpha 13-glucosyltransferase WaaG [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| NODE_32 length_92656 cov_146.126465 | 28836 | 29708 | xcpA/pilD | 0/0 | 100 | 100 | NP_253218 | (xcpA/pilD) type 4 prepilin peptidase PilD [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_15 length_234692 cov_129.616073 | 6742 | 7449 | xcpP | 0/0 | 100 | 100 | NP_251794 | (xcpP) secretion protein XcpP [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_15 length_234692 cov_129.616073 | 4761 | 6737 | xcpQ | 0/0 | 100 | 100 | NP_251795 | (xcpQ) general secretion pathway protein D [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_15 length_234692 cov_129.616073 | 7669 | 9177 | xcpR | 0/0 | 100 | 100 | NP_251793 | (xcpR) general secretion pathway protein E [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_15 length_234692 cov_129.616073 | 9177 | 10394 | xcpS | 0/0 | 100 | 100 | NP_251792 | (xcpS) general secretion pathway protein F [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_15 length_234692 cov_129.616073 | 10399 | 10845 | xcpT | 0/0 | 100 | 100 | NP_251791 | (xcpT) general secretion pathway protein G [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_15 length_234692 cov_129.616073 | 10852 | 11370 | xcpU | 0/0 | 100 | 99 | NP_251790 | (xcpU) general secretion pathway protein H [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_15 length_234692 cov_129.616073 | 11367 | 11756 | xcpV | 0/0 | 100 | 99 | NP_251789 | (xcpV) general secretion pathway protein I [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_15 length_234692 cov_129.616073 | 11753 | 12466 | xcpW | 0/0 | 100 | 99 | NP_251788 | (xcpW) general secretion pathway protein J [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_15 length_234692 cov_129.616073 | 12463 | 13464 | xcpX | 0/0 | 100 | 97 | NP_251787 | (xcpX) general secretion pathway protein K [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_15 length_234692 cov_129.616073 | 13461 | 14609 | xcpY | 0/0 | 100 | 99 | NP_251786 | (xcpY) general secretion pathway protein L [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_15 length_234692 cov_129.616073 | 14611 | 15135 | xcpZ | 0/0 | 100 | 100 | NP_251785 | (xcpZ) general secretion pathway protein M [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
Sample-07
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| NODE_13 length_148835 cov_135.704197 | 25479 | 26648 | alg44 | 0/0 | 100 | 100 | NP_252232 | (alg44) alginate biosynthesis protein Alg8 [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_13 length_148835 cov_135.704197 | 26731 | 28215 | alg8 | 0/0 | 100 | 100 | NP_252231 | (alg8) alginate-c5-mannuronan-epimerase AlgG [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_13 length_148835 cov_135.704197 | 13026 | 14471 | algA | 0/0 | 100 | 100 | NP_252241 | (algA) phosphomannose isomerase / guanosine 5’-diphospho-D-mannose pyrophosphorylase [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_29 length_74579 cov_159.195847 | 59901 | 61250 | algB | 0/0 | 100 | 100 | NP_254170 | (algB) two-component response regulator AlgB [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_238922 cov_149.014034 | 26887 | 28278 | algC | 0/0 | 100 | 100 | NP_254009 | (algC) phosphomannomutase AlgC [Alginate biosynthesis (CVF522)] [Pseudomonas aeruginosa PAO1] |
| NODE_13 length_148835 cov_135.704197 | 28355 | 29665 | algD | 0/0 | 100 | 100 | NP_252230 | (algD) GDP-mannose 6-dehydrogenase AlgD [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_13 length_148835 cov_135.704197 | 22569 | 24041 | algE | 0/0 | 100 | 100 | NP_252234 | (algE) alginate biosynthetic protein AlgK precursor [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_13 length_148835 cov_135.704197 | 14668 | 15318 | algF | 0/0 | 100 | 100 | NP_252240 | (algF) alginate o-acetyltransferase AlgF [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_13 length_148835 cov_135.704197 | 20917 | 22548 | algG | 0/0 | 100 | 100 | NP_252235 | (algG) outer membrane protein AlgE [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_13 length_148835 cov_135.704197 | 16581 | 18143 | algI | 0/0 | 100 | 100 | NP_252238 | (algI) alginate o-acetyltransferase AlgI [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_13 length_148835 cov_135.704197 | 15391 | 16566 | algJ | 0/0 | 100 | 100 | NP_252239 | (algJ) alginate o-acetyltransferase AlgJ [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_13 length_148835 cov_135.704197 | 24038 | 25465 | algK | 0/0 | 100 | 100 | NP_252233 | (algK) alginate biosynthesis protein Alg44 [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_13 length_148835 cov_135.704197 | 18373 | 19476 | algL | 0/0 | 100 | 100 | NP_252237 | (algL) poly(beta-d-mannuronate) lyase precursor AlgL [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_238922 cov_149.014034 | 104585 | 105619 | algP/algR3 | 1/24 | 98 | 96 | NP_253940 | (algP/algR3) alginate regulatory protein AlgP [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_238922 cov_149.014034 | 103286 | 103768 | algQ | 0/0 | 100 | 99 | NP_253942 | (algQ) Alginate regulatory protein AlgQ [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_238922 cov_149.014034 | 97395 | 98141 | algR | 0/0 | 100 | 100 | NP_253948 | (algR) alginate biosynthesis regulatory protein AlgR [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_12 length_153754 cov_137.417278 | 60561 | 61142 | algU | 0/0 | 100 | 100 | NP_249453 | (algU) alginate biosynthesis protein AlgZ/FimS [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_10 length_217510 cov_146.673141 | 185941 | 187110 | algW | 0/0 | 100 | 100 | NP_253136 | (algW) AlgW protein [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| NODE_13 length_148835 cov_135.704197 | 19480 | 20904 | algX | 0/0 | 100 | 100 | NP_252236 | (algX) alginate biosynthesis protein AlgX [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_6 length_238922 cov_149.014034 | 96314 | 97390 | algZ | 0/0 | 100 | 100 | NP_253949 | (algZ) sigma factor AlgU [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_46 length_38092 cov_146.749651 | 18558 | 19997 | aprA | 0/0 | 100 | 99 | NP_249940 | (aprA) alkaline metalloproteinase precursor [Alkaline protease (VF0090)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_397627 cov_152.412054 | 146271 | 153689 | chpA | 0/0 | 100 | 100 | NP_249104 | (chpA) still frameshift probable component of chemotactic signal transduction system [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_397627 cov_152.412054 | 153682 | 154713 | chpB | 0/0 | 100 | 99 | NP_249105 | (chpB) probable methylesterase [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_397627 cov_152.412054 | 154710 | 155216 | chpC | 0/0 | 100 | 99 | NP_249106 | (chpC) probable chemotaxis protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_397627 cov_152.412054 | 155224 | 156018 | chpD | 0/0 | 100 | 99 | NP_249107 | (chpD) probable transcriptional regulator [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_397627 cov_152.412054 | 156094 | 156705 | chpE | 0/0 | 100 | 100 | NP_249108 | (chpE) probable chemotaxis protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_20 length_103396 cov_158.435496 | 88710 | 91418 | clpV1 | 0/0 | 100 | 99 | NP_248780 | (clpV1) type VI secretion system AAA+ family ATPase [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_85 length_7054 cov_139.205246 | 1 | 1217 | dotU1 | 0/0 | 90 | 100 | NP_248768 | (dotU1) type VI secretion system protein DotU [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_9 length_217707 cov_146.583922 | 187743 | 189104 | exoS | 0/0 | 100 | 99 | NP_252530 | (exoS) type III secretion system effector ExoS ADP ribosyltransferase activity and GTPase-activating protein activity [ExoS (VF0096)] [Pseudomonas aeruginosa PAO1] |
| NODE_44 length_41382 cov_161.118121 | 27946 | 29319 | exoT | 0/0 | 100 | 99 | NP_248734 | (exoT) type III secretion system effector ExoT ADP ribosyltransferase activity and GTPase-activating protein activity [ExoT (VF0097)] [Pseudomonas aeruginosa PAO1] |
| NODE_19 length_108211 cov_140.686639 | 18481 | 19617 | exoY | 0/0 | 100 | 99 | NP_250881 | (exoY) type III secretion system effector ExoY adenylate cyclase [ExoY (VF0099)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_353044 cov_152.723487 | 277336 | 278172 | exsA | 0/0 | 100 | 100 | NP_250404 | (exsA) type III secretion system regulatory protein ExsA [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_353044 cov_152.723487 | 278470 | 278883 | exsB | 0/0 | 100 | 100 | NP_250403 | (exsB) type III secretion system piolitin ExsB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_353044 cov_152.723487 | 279146 | 279583 | exsC | 0/0 | 100 | 99 | NP_250401 | (exsC) type III secretion system regulatory protein ExsC [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_353044 cov_152.723487 | 276408 | 277238 | exsD | 0/0 | 100 | 99 | NP_250405 | (exsD) type III secretion system regulatory protein ExsD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_353044 cov_152.723487 | 278892 | 279137 | exsE | 0/0 | 100 | 97 | NP_250402 | (exsE) type III secretion system regulatory protein ExsE [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_20 length_103396 cov_158.435496 | 99883 | 101388 | fha1 | 1/12 | 100 | 99 | NP_248771 | (fha1) type VI secretion system forkhead-associated protein Fha1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_3 length_345658 cov_168.996912 | 181395 | 181904 | fimT | 0/0 | 100 | 100 | NP_253239 | (fimT) type 4 fimbrial biogenesis protein FimT [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_3 length_345658 cov_168.996912 | 182010 | 182516 | fimU | 0/0 | 100 | 100 | NP_253240 | (fimU) type 4 fimbrial biogenesis protein FimU [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_45 length_40317 cov_146.337873 | 33212 | 35971 | fimV | 0/0 | 100 | 99 | NP_251805 | (fimV) putative Type IV pili related protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_21 length_99743 cov_152.390484 | 57088 | 57930 | fleN | 0/0 | 100 | 100 | NP_250145 | (fleN) flagellar synthesis regulator FleN [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_5 length_289325 cov_157.450247 | 213924 | 215396 | fleQ | 0/0 | 100 | 99 | NP_249788 | (fleQ) transcriptional regulator FleQ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_5 length_289325 cov_157.450247 | 216722 | 218143 | fleR | 0/0 | 100 | 99 | NP_249790 | (fleR) two-component response regulator [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_5 length_289325 cov_157.450247 | 215509 | 216717 | fleS | 0/0 | 100 | 99 | NP_249789 | (fleS) two-component sensor [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_7 length_236407 cov_139.946185 | 50699 | 51397 | flgA | 0/0 | 100 | 100 | NP_252040 | (flgA) flagellar basal body P-ring biosynthesis protein FlgA [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_5 length_289325 cov_157.450247 | 181678 | 182085 | flgB | 0/0 | 100 | 100 | NP_249768 | (flgB) flagellar basal body rod protein FlgB [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_5 length_289325 cov_157.450247 | 182091 | 182531 | flgC | 0/0 | 100 | 100 | NP_249769 | (flgC) flagellar basal-body rod protein FlgC [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_5 length_289325 cov_157.450247 | 182544 | 183257 | flgD | 0/0 | 100 | 100 | NP_249770 | (flgD) flagellar basal-body rod modification protein FlgD [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_5 length_289325 cov_157.450247 | 183285 | 184673 | flgE | 0/0 | 100 | 100 | NP_249771 | (flgE) flagellar hook protein FlgE [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_5 length_289325 cov_157.450247 | 184891 | 185640 | flgF | 0/0 | 100 | 100 | NP_249772 | (flgF) flagellar basal-body rod protein FlgF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_5 length_289325 cov_157.450247 | 185687 | 186472 | flgG | 0/0 | 100 | 100 | NP_249773 | (flgG) flagellar basal-body rod protein FlgG [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_5 length_289325 cov_157.450247 | 186518 | 187213 | flgH | 0/0 | 100 | 100 | NP_249774 | (flgH) flagellar L-ring protein precursor FlgH [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_5 length_289325 cov_157.450247 | 187225 | 188334 | flgI | 0/0 | 100 | 100 | NP_249775 | (flgI) flagellar P-ring protein precursor FlgI [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_5 length_289325 cov_157.450247 | 188345 | 189547 | flgJ | 0/0 | 100 | 100 | NP_249776 | (flgJ) flagellar rod assembly protein/muramidase FlgJ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_7 length_236407 cov_139.946185 | 50231 | 50554 | flgM | 0/0 | 100 | 100 | NP_252041 | (flgM) negative regulator of flagellin synthesis [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_7 length_236407 cov_139.946185 | 49706 | 50176 | flgN | 0/0 | 100 | 99 | NP_252042 | (flgN) flagella synthesis protein FlgN [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_21 length_99743 cov_152.390484 | 59442 | 61565 | flhA | 0/0 | 100 | 100 | NP_250143 | (flhA) flagellar biosynthesis protein FlhA [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_21 length_99743 cov_152.390484 | 64439 | 65575 | flhB | 0/0 | 100 | 100 | NP_250140 | (flhB) flagellar biosynthetic protein FlhB [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_21 length_99743 cov_152.390484 | 58069 | 59358 | flhF | 0/0 | 100 | 100 | NP_250144 | (flhF) flagellar biosynthesis protein FlhF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_21 length_99743 cov_152.390484 | 56348 | 57091 | fliA | 0/0 | 100 | 100 | NP_250146 | (fliA) flagellar biosynthesis sigma factor FliA [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_5 length_289325 cov_157.450247 | 218390 | 218719 | fliE | 0/0 | 100 | 99 | NP_249791 | (fliE) flagellar hook-basal body complex protein FliE [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_5 length_289325 cov_157.450247 | 218742 | 220538 | fliF | 0/0 | 100 | 100 | NP_249792 | (fliF) flagellar M-ring protein FliF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_5 length_289325 cov_157.450247 | 220544 | 221560 | fliG | 0/0 | 100 | 99 | NP_249793 | (fliG) flagellar motor switch protein G [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_5 length_289325 cov_157.450247 | 221562 | 222368 | fliH | 0/0 | 100 | 100 | NP_249794 | (fliH) flagellar assembly protein H [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_5 length_289325 cov_157.450247 | 222358 | 223713 | fliI | 0/0 | 100 | 100 | NP_249795 | (fliI) flagellum-specific ATP synthase FliI [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_5 length_289325 cov_157.450247 | 223727 | 224170 | fliJ | 0/0 | 100 | 100 | NP_249796 | (fliJ) flagellar protein FliJ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_21 length_99743 cov_152.390484 | 70131 | 71414 | fliK | 0/0 | 100 | 100 | NP_250132 | (fliK) flagellar hook-length control protein FliK [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_21 length_99743 cov_152.390484 | 69366 | 69887 | fliL | 0/0 | 100 | 100 | NP_250133 | (fliL) flagellar basal body protein FliL [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_21 length_99743 cov_152.390484 | 68387 | 69358 | fliM | 0/0 | 100 | 100 | NP_250134 | (fliM) flagellar motor switch protein FliM [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_21 length_99743 cov_152.390484 | 67886 | 68359 | fliN | 0/0 | 100 | 100 | NP_250135 | (fliN) flagellar motor switch protein FliN [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_21 length_99743 cov_152.390484 | 67432 | 67884 | fliO | 0/0 | 100 | 99 | NP_250136 | (fliO) flagellar protein FliO [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_21 length_99743 cov_152.390484 | 66668 | 67435 | fliP | 0/0 | 100 | 99 | NP_250137 | (fliP) flagellar biosynthetic protein FliP [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_21 length_99743 cov_152.390484 | 66354 | 66623 | fliQ | 0/0 | 100 | 100 | NP_250138 | (fliQ) flagellar biosynthetic protein FliQ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_21 length_99743 cov_152.390484 | 65578 | 66354 | fliR | 0/0 | 100 | 99 | NP_250139 | (fliR) flagellar biosynthetic protein FliR [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_90 length_5297 cov_113.763793 | 1614 | 3776 | fptA | 0/0 | 100 | 99 | NP_252911 | (fptA) Fe(III)-pyochelin receptor precursor [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_24 length_87426 cov_134.814022 | 83340 | 85787 | fpvA | 0/0 | 100 | 100 | NP_251088 | (fpvA) ferripyoverdine receptor FpvA [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1] |
| NODE_20 length_103396 cov_158.435496 | 95801 | 96289 | hcp1 | 0/0 | 100 | 100 | NP_248775 | (hcp1) type VI secretion system substrate Hcp1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_20 length_103396 cov_158.435496 | 98481 | 99515 | hsiA1 | 0/0 | 100 | 99 | NP_248772 | (hsiA1) type VI secretion system hcp secretion island protein HsiA1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_20 length_103396 cov_158.435496 | 97874 | 98392 | hsiB1/vipA | 0/0 | 100 | 100 | NP_248773 | (hsiB1/vipA) type VI secretion system tubule-forming protein VipA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_20 length_103396 cov_158.435496 | 96365 | 97861 | hsiC1/vipB | 0/0 | 100 | 100 | NP_248774 | (hsiC1/vipB) type VI secretion system tubule-forming protein VipB [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_20 length_103396 cov_158.435496 | 94788 | 95633 | hsiE1 | 0/0 | 100 | 99 | NP_248776 | (hsiE1) type VI secretion system hcp secretion island protein HsiE1 interacting with HsiB1 to form a novel subcomplex of the T6SS [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_20 length_103396 cov_158.435496 | 94277 | 94786 | hsiF1 | 0/0 | 100 | 100 | NP_248777 | (hsiF1) type VI secretion system hcp secretion island protein HsiF1 a gp25-like protein but not exhibit lysozyme activity [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_20 length_103396 cov_158.435496 | 92421 | 94280 | hsiG1 | 0/0 | 100 | 100 | NP_248778 | (hsiG1) type VI secretion system hcp secretion island protein HsiG1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_20 length_103396 cov_158.435496 | 91411 | 92457 | hsiH1 | 0/0 | 100 | 100 | NP_248779 | (hsiH1) type VI secretion system hcp secretion island protein HsiH1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_20 length_103396 cov_158.435496 | 101913 | 103247 | hsiJ1 | 0/0 | 100 | 100 | NP_248769 | (hsiJ1) type VI secretion system hcp secretion island protein HsiJ1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_85 length_7054 cov_139.205246 | 1439 | 4747 | icmF1/tssM1 | 1/3 | 100 | 99 | NP_248767 | (icmF1/tssM1) type VI secretion system protein IcmF1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_353044 cov_152.723487 | 37331 | 38587 | lasA | 0/0 | 100 | 99 | NP_250562 | (lasA) LasA protease precursor [LasA (VF0088)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_201695 cov_147.288804 | 40605 | 42101 | lasB | 0/0 | 100 | 100 | NP_252413 | (lasB) elastase LasB [LasB (VF0087)] [Pseudomonas aeruginosa PAO1] |
| NODE_21 length_99743 cov_152.390484 | 82051 | 82656 | lasI | 0/0 | 100 | 100 | NP_250123 | (lasI) autoinducer synthesis protein LasI [Quorum sensing (VF0093)] [Pseudomonas aeruginosa PAO1] |
| NODE_20 length_103396 cov_158.435496 | 101433 | 101897 | lip1 | 0/0 | 100 | 100 | NP_248770 | (lip1) lipoprotein [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_43 length_42235 cov_145.116040 | 31314 | 31532 | mbtH-like | 0/0 | 100 | 100 | NP_251102 | (mbtH-like) MbtH-like protein from the pyoverdine cluster [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_51 length_33311 cov_148.176235 | 28287 | 29138 | motA | 0/0 | 100 | 100 | NP_253641 | (motA) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_51 length_33311 cov_148.176235 | 29158 | 30201 | motB | 0/0 | 100 | 99 | NP_253640 | (motB) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_21 length_99743 cov_152.390484 | 50613 | 51353 | motC | 0/0 | 100 | 100 | NP_250151 | (motC) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_21 length_99743 cov_152.390484 | 49710 | 50600 | motD | 0/0 | 100 | 99 | NP_250152 | (motD) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_13 length_148835 cov_135.704197 | 45529 | 46494 | motY | 0/0 | 100 | 100 | NP_252216 | (motY) probable outer membrane protein precursor [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_12 length_153754 cov_137.417278 | 59945 | 60529 | mucA | 0/0 | 100 | 100 | NP_249454 | (mucA) alkaline metalloproteinase precursor [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_12 length_153754 cov_137.417278 | 58986 | 59936 | mucB | 0/0 | 100 | 100 | NP_249455 | (mucB) anti-sigma factor MucA inhibitor of alg gene expression [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_12 length_153754 cov_137.417278 | 58534 | 58989 | mucC | 0/0 | 100 | 100 | NP_249456 | (mucC) negative regulator for alginate biosynthesis MucB [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_12 length_153754 cov_137.417278 | 57070 | 58494 | mucD | 0/0 | 100 | 100 | NP_249457 | (mucD) serine protease MucD precursor [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| NODE_56 length_29372 cov_150.464619 | 10366 | 10635 | mucE | 0/0 | 100 | 100 | NP_252722 | (mucE) small envelope protein MucE [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| NODE_11 length_201695 cov_147.288804 | 122185 | 123537 | mucP | 0/0 | 100 | 100 | NP_252339 | (mucP) metalloprotease protease [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| NODE_55 length_30098 cov_150.133573 | 7328 | 8758 | pchA | 0/0 | 100 | 99 | NP_252921 | (pchA) salicylate biosynthesis isochorismate synthase PchA [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_55 length_30098 cov_150.133573 | 7026 | 7331 | pchB | 0/0 | 100 | 100 | NP_252920 | (pchB) salicylate biosynthesis protein PchB [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_55 length_30098 cov_150.133573 | 6271 | 7026 | pchC | 0/0 | 100 | 100 | NP_252919 | (pchC) pyochelin biosynthetic protein PchC [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_55 length_30098 cov_150.133573 | 4631 | 6274 | pchD | 0/0 | 100 | 100 | NP_252918 | (pchD) pyochelin biosynthesis protein PchD [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_103 length_2854 cov_69.667987 | 911 | 1960 | pchG | 0/0 | 100 | 99 | NP_252914 | (pchG) pyochelin biosynthetic protein PchG [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_55 length_30098 cov_150.133573 | 3511 | 4401 | pchR | 0/0 | 100 | 100 | NP_252917 | (pchR) transcriptional regulator PchR [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_353044 cov_152.723487 | 287096 | 287374 | pcr1 | 0/0 | 100 | 100 | NP_250390 | (pcr1) type III secretion system protein Pcr1 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_353044 cov_152.723487 | 286738 | 287109 | pcr2 | 0/0 | 100 | 99 | NP_250391 | (pcr2) type III secretion system protein Pcr2 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_353044 cov_152.723487 | 286376 | 286741 | pcr3 | 0/0 | 100 | 99 | NP_250392 | (pcr3) type III secretion system protein Pcr3 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_353044 cov_152.723487 | 286042 | 286371 | pcr4 | 0/0 | 100 | 100 | NP_250393 | (pcr4) type III secretion system protein Pcr4 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_353044 cov_152.723487 | 283925 | 286045 | pcrD | 0/0 | 100 | 100 | NP_250394 | (pcrD) type III secretion system protein PcrD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_353044 cov_152.723487 | 283170 | 283466 | pcrG | 0/0 | 100 | 100 | NP_250396 | (pcrG) type III secretion system cytoplasmic regulator PcrG [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_353044 cov_152.723487 | 281761 | 282267 | pcrH | 1/3 | 100 | 99 | NP_250398 | (pcrH) type III secretion system regulatory protein PcrH [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_353044 cov_152.723487 | 283494 | 283928 | pcrR | 0/0 | 100 | 100 | NP_250395 | (pcrR) type III secretion system regulatory protein PcrR [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_353044 cov_152.723487 | 282276 | 283160 | pcrV | 0/0 | 100 | 99 | NP_250397 | (pcrV) type III secretion system hydrophilic translocator needle tip protein PcrV [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_353044 cov_152.723487 | 625 | 1067 | phzA1 | 0/0 | 91 | 96 | NP_252899 | (phzA1) phenazine biosynthesis protein PhzA [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| NODE_65 length_19066 cov_140.811364 | 17948 | 18436 | phzA1 | 0/0 | 100 | 100 | NP_252899 | (phzA1) phenazine biosynthesis protein PhzA [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| NODE_65 length_19066 cov_140.811364 | 18466 | 18954 | phzB1 | 0/0 | 100 | 99 | NP_252900 | (phzB1) phenazine biosynthesis protein PhzB [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| NODE_97 length_4198 cov_230.387042 | 2981 | 4198 | phzC1 | 0/0 | 100 | 99 | NP_252901 | (phzC1) phenazine biosynthesis protein PhzC [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| NODE_97 length_4198 cov_230.387042 | 2361 | 2984 | phzD1 | 0/0 | 100 | 99 | NP_252902 | (phzD1) phenazine biosynthesis protein PhzD isochorismatase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| NODE_97 length_4198 cov_230.387042 | 481 | 2364 | phzE1 | 0/0 | 100 | 100 | NP_252903 | (phzE1) phenazine biosynthesis protein PhzE [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| NODE_138 length_779 cov_184.002849 | 82 | 726 | phzG1 | 0/0 | 100 | 100 | NP_252906 | (phzG1) phenazine biosynthesis protein PhzG pyridoxamine 5’-phosphate oxidase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| NODE_44 length_41382 cov_161.118121 | 19973 | 21805 | phzH | 0/0 | 100 | 99 | NP_248741 | (phzH) phenazine-modifying enzyme [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| NODE_65 length_19066 cov_140.811364 | 16247 | 17251 | phzM | 0/0 | 100 | 100 | NP_252898 | (phzM) phenazine-specific methyltransferase PhzM (adenosylmethionine dependent methyltransferase) [Pyocyanin (VF0100)] [Pseudomonas aeruginosa PAO1] |
| NODE_102 length_2921 cov_134.611814 | 1510 | 2718 | phzS | 0/0 | 100 | 100 | NP_252907 | (phzS) flavin dependent hydroxylase PhzS [Pyocyanin (VF0100)] [Pseudomonas aeruginosa PAO1] |
| NODE_3 length_345658 cov_168.996912 | 188318 | 188743 | pilE | 0/0 | 100 | 100 | NP_253246 | (pilE) type 4 fimbrial biogenesis protein PilE [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_26 length_82362 cov_152.960588 | 60405 | 61163 | pilF | 0/0 | 100 | 100 | NP_252494 | (pilF) type 4 fimbrial biogenesis protein PilF [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_397627 cov_152.412054 | 141784 | 142191 | pilG | 0/0 | 100 | 100 | NP_249099 | (pilG) twitching motility protein PilG [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_397627 cov_152.412054 | 142238 | 142603 | pilH | 0/0 | 100 | 100 | NP_249100 | (pilH) twitching motility protein PilH [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_397627 cov_152.412054 | 142654 | 143190 | pilI | 0/0 | 100 | 100 | NP_249101 | (pilI) twitching motility protein PilI [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_397627 cov_152.412054 | 143275 | 145323 | pilJ | 0/0 | 100 | 100 | NP_249102 | (pilJ) twitching motility protein PilJ [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_397627 cov_152.412054 | 145384 | 146259 | pilK | 0/0 | 100 | 100 | NP_249103 | (pilK) methyltransferase PilK [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_18 length_108767 cov_151.278287 | 6852 | 7916 | pilM | 0/0 | 100 | 100 | NP_253731 | (pilM) type IV pilus inner membrane platform protein PilM [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_18 length_108767 cov_151.278287 | 6256 | 6852 | pilN | 0/0 | 100 | 100 | NP_253730 | (pilN) type IV pilus inner membrane platform protein PilN [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_18 length_108767 cov_151.278287 | 5636 | 6259 | pilO | 0/0 | 100 | 100 | NP_253729 | (pilO) type IV pilus inner membrane platform protein PilO [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_18 length_108767 cov_151.278287 | 5115 | 5639 | pilP | 0/0 | 100 | 100 | NP_253728 | (pilP) type IV pilus biogenesis protein PilP [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_18 length_108767 cov_151.278287 | 2917 | 5061 | pilQ | 0/0 | 100 | 97 | NP_253727 | (pilQ) type 4 fimbrial biogenesis protein PilQ [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_3 length_345658 cov_168.996912 | 178783 | 180120 | pilR | 0/0 | 100 | 100 | NP_253237 | (pilR) two-component response regulator PilR [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_3 length_345658 cov_168.996912 | 177176 | 178768 | pilS | 0/0 | 100 | 100 | NP_253236 | (pilS) two-component sensor PilS [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_397627 cov_152.412054 | 128715 | 129749 | pilT | 0/0 | 100 | 100 | NP_249086 | (pilT) twitching motility protein PilT [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_1 length_397627 cov_152.412054 | 129927 | 131075 | pilU | 0/0 | 100 | 100 | NP_249087 | (pilU) twitching motility protein PilU [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_3 length_345658 cov_168.996912 | 182507 | 183064 | pilV | 0/0 | 100 | 100 | NP_253241 | (pilV) type IV pilus biogenesis protein PilV [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_3 length_345658 cov_168.996912 | 183061 | 183885 | pilW | 0/0 | 100 | 100 | NP_253242 | (pilW) type IV fimbrial biogenesis protein PilW [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_3 length_345658 cov_168.996912 | 183882 | 184469 | pilX | 0/0 | 100 | 100 | NP_253243 | (pilX) type 4 fimbrial biogenesis protein PilX [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_3 length_345658 cov_168.996912 | 184481 | 187972 | pilY1 | 10/30 | 100 | 92 | NP_253244 | (pilY1) type 4 fimbrial biogenesis protein PilY1 [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_3 length_345658 cov_168.996912 | 187974 | 188321 | pilY2 | 0/0 | 100 | 99 | NP_253245 | (pilY2) type 4 fimbrial biogenesis protein PilY2 [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_22 length_97812 cov_144.969581 | 25516 | 27708 | plcH | 0/0 | 100 | 99 | NP_249535 | (plcH) hemolytic phospholipase C precursor [PLC (VF0092)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_353044 cov_152.723487 | 280608 | 281780 | popB | 0/0 | 100 | 99 | NP_250399 | (popB) type III secretion system hydrophobic translocator pore protein PopB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_353044 cov_152.723487 | 279709 | 280596 | popD | 0/0 | 100 | 100 | NP_250400 | (popD) type III secretion system hydrophobic translocator pore protein PopD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_353044 cov_152.723487 | 287355 | 288221 | popN | 0/0 | 100 | 99 | NP_250389 | (popN) type III secretion system outer membrane protein PopN [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_85 length_7054 cov_139.205246 | 5434 | 6162 | pppA | 0/0 | 100 | 100 | NP_248765 | (pppA) Pseudomonas protein phosphatase PppA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_353044 cov_152.723487 | 275952 | 276374 | pscB | 0/0 | 100 | 99 | NP_250406 | (pscB) type III secretion system protein PscB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_353044 cov_152.723487 | 274150 | 275952 | pscC | 0/0 | 100 | 100 | NP_250407 | (pscC) type III secretion system secretin PscC [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_353044 cov_152.723487 | 272850 | 274148 | pscD | 0/0 | 100 | 100 | NP_250408 | (pscD) type III secretion system basal body protein PscD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_353044 cov_152.723487 | 272684 | 272887 | pscE | 0/0 | 100 | 99 | NP_250409 | (pscE) type III secretion system cochaperone PscE for PscG [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_353044 cov_152.723487 | 272424 | 272681 | pscF | 0/0 | 100 | 100 | NP_250410 | (pscF) type III secretion system needle filament protein PscF [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_353044 cov_152.723487 | 272074 | 272421 | pscG | 0/0 | 100 | 100 | NP_250411 | (pscG) type III secretion system chaperone PscG for PscF [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_353044 cov_152.723487 | 271646 | 272077 | pscH | 0/0 | 100 | 100 | NP_250412 | (pscH) type III secretion system protein PscH [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_353044 cov_152.723487 | 271308 | 271646 | pscI | 0/0 | 100 | 99 | NP_250413 | (pscI) type III secretion system inner rod protein PscI [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_353044 cov_152.723487 | 270565 | 271311 | pscJ | 0/0 | 100 | 100 | NP_250414 | (pscJ) type III secretion system inner MS ring protein [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_353044 cov_152.723487 | 269936 | 270556 | pscK | 1/6 | 99 | 99 | NP_250415 | (pscK) type III secretion system protein PscK [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_353044 cov_152.723487 | 269313 | 269957 | pscL | 0/0 | 100 | 100 | NP_250416 | (pscL) type III secretion systemt protein PscL [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_353044 cov_152.723487 | 288412 | 289734 | pscN | 0/0 | 100 | 99 | NP_250388 | (pscN) type III secretion system ATPase PscN [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_353044 cov_152.723487 | 289731 | 290207 | pscO | 0/0 | 100 | 100 | NP_250387 | (pscO) type III secretion system protein PscO [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_353044 cov_152.723487 | 290195 | 291280 | pscP | 1/24 | 98 | 97 | NP_250386 | (pscP) type III secretion system protein PscP [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_353044 cov_152.723487 | 291277 | 292206 | pscQ | 0/0 | 100 | 99 | NP_250385 | (pscQ) type III secretion system protein PscQ [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_353044 cov_152.723487 | 292203 | 292856 | pscR | 0/0 | 100 | 100 | NP_250384 | (pscR) type III secretion system protein PscR [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_353044 cov_152.723487 | 292859 | 293125 | pscS | 0/0 | 100 | 100 | NP_250383 | (pscS) type III secretion system protein PscS [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_353044 cov_152.723487 | 293122 | 293910 | pscT | 0/0 | 100 | 99 | NP_250382 | (pscT) type III secretion system protein PscT [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_353044 cov_152.723487 | 293907 | 294956 | pscU | 0/0 | 100 | 100 | NP_250381 | (pscU) type III secretion system protein PscU [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_52 length_33244 cov_130.608798 | 5604 | 6542 | ptxR | 0/0 | 100 | 100 | NP_250948 | (ptxR) transcriptional regulator PtxR [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_52 length_33244 cov_130.608798 | 1298 | 2284 | pvcA | 0/0 | 100 | 100 | NP_250944 | (pvcA) paerucumarin biosynthesis protein PvcA [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_52 length_33244 cov_130.608798 | 2302 | 3177 | pvcB | 0/0 | 100 | 100 | NP_250945 | (pvcB) paerucumarin biosynthesis protein PvcB [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_52 length_33244 cov_130.608798 | 3229 | 4731 | pvcC | 0/0 | 100 | 99 | NP_250946 | (pvcC) paerucumarin biosynthesis protein PvcC [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_52 length_33244 cov_130.608798 | 4724 | 5371 | pvcD | 0/0 | 100 | 100 | NP_250947 | (pvcD) paerucumarin biosynthesis protein PvcD [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_24 length_87426 cov_134.814022 | 67081 | 68412 | pvdA | 0/0 | 100 | 99 | NP_251076 | (pvdA) L-ornithine N5-oxygenase PvdA [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1] |
| NODE_24 length_87426 cov_134.814022 | 81588 | 83237 | pvdE | 0/0 | 100 | 100 | NP_251087 | (pvdE) pyoverdine biosynthesis protein PvdE [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1] |
| NODE_24 length_87426 cov_134.814022 | 80383 | 81210 | pvdF | 0/0 | 100 | 100 | NP_251086 | (pvdF) pyoverdine synthetase F [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_34 length_66251 cov_144.351467 | 16484 | 17248 | pvdG | 0/0 | 100 | 100 | NP_251115 | (pvdG) pyoverdine biosynthesis protein PvdG [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_43 length_42235 cov_145.116040 | 31610 | 33019 | pvdH | 0/0 | 100 | 99 | NP_251103 | (pvdH) diaminobutyrate-2-oxoglutarate aminotransferase PvdH [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_43 length_42235 cov_145.116040 | 8497 | 23946 | pvdI | 2/6 | 100 | 99 | NP_251092 | (pvdI) peptide synthase [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_43 length_42235 cov_145.116040 | 1924 | 8397 | pvdJ | 0/0 | 100 | 99 | NP_251090 | (pvdJ) pyoverdine biosynthesis protein PvdJ [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_34 length_66251 cov_144.351467 | 3383 | 16411 | pvdL | 0/0 | 100 | 99 | NP_251114 | (pvdL) peptide synthase PvdL [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_24 length_87426 cov_134.814022 | 76779 | 78125 | pvdM | 0/0 | 100 | 99 | NP_251083 | (pvdM) dipeptidase precursor [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_24 length_87426 cov_134.814022 | 78148 | 79431 | pvdN | 0/0 | 100 | 100 | NP_251084 | (pvdN) pyoverdine biosynthesis protein PvdN [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_24 length_87426 cov_134.814022 | 79460 | 80314 | pvdO | 0/0 | 100 | 99 | NP_251085 | (pvdO) pyoverdine biosynthesis protein PvdO [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_24 length_87426 cov_134.814022 | 74929 | 76563 | pvdP | 0/0 | 100 | 99 | NP_251082 | (pvdP) tyrosinase required for pyoverdine maturation [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_24 length_87426 cov_134.814022 | 64670 | 66958 | pvdQ | 0/0 | 100 | 100 | NP_251075 | (pvdQ) 3-oxo-C12-homoserine lactone acylase PvdQ [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_34 length_66251 cov_144.351467 | 17892 | 18455 | pvdS | 0/0 | 100 | 100 | NP_251116 | (pvdS) extracytoplasmic-function sigma-70 factor [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1] |
| NODE_13 length_148835 cov_135.704197 | 75805 | 76692 | rhlA | 0/0 | 100 | 99 | NP_252169 | (rhlA) rhamnosyltransferase chain A [Rhamnolipid (VF0089)] [Pseudomonas aeruginosa PAO1] |
| NODE_13 length_148835 cov_135.704197 | 76758 | 78038 | rhlB | 0/0 | 100 | 99 | NP_252168 | (rhlB) rhamnosyltransferase chain B [Rhamnolipid (VF0089)] [Pseudomonas aeruginosa PAO1] |
| NODE_5 length_289325 cov_157.450247 | 248423 | 249400 | rhlC | 0/0 | 100 | 99 | NP_249821 | (rhlC) rhamnosyltransferase 2 [Rhamnolipid biosynthesis (CVF524)] [Pseudomonas aeruginosa PAO1] |
| NODE_13 length_148835 cov_135.704197 | 79068 | 79673 | rhlI | 0/0 | 100 | 99 | NP_252166 | (rhlI) autoinducer synthesis protein RhlL [Quorum sensing (VF0093)] [Pseudomonas aeruginosa PAO1] |
| NODE_85 length_7054 cov_139.205246 | 4744 | 5424 | tagF/pppB | 0/0 | 100 | 100 | NP_248766 | (tagF/pppB) Pseudomonas protein phosphatase PppB [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_44 length_41382 cov_161.118121 | 5508 | 6422 | tagQ | 0/0 | 100 | 100 | NP_248760 | (tagQ) type VI secretiona ssociated protein TagQ outer membrane lipoprotein [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| NODE_44 length_41382 cov_161.118121 | 3734 | 5446 | tagR | 0/0 | 100 | 99 | NP_248761 | (tagR) type IV secretion associated protein TagR positively regulates PpkA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_44 length_41382 cov_161.118121 | 2542 | 3741 | tagS | 0/0 | 100 | 100 | NP_248762 | (tagS) type IV secretion associated protein TagS forming a stable inner membrane complex with TagT [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_44 length_41382 cov_161.118121 | 1823 | 2542 | tagT | 0/0 | 100 | 100 | NP_248763 | (tagT) type six secretion associated protein TagT ATP-binding component of ABC transporter [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_5 length_289325 cov_157.450247 | 266911 | 268827 | toxA | 0/0 | 100 | 99 | NP_249839 | (toxA) exotoxin A precursor [ExoA (VF0086)] [Pseudomonas aeruginosa PAO1] |
| NODE_2 length_353044 cov_152.723487 | 66950 | 67414 | tse1 | 0/0 | 100 | 100 | NP_250535 | (tse1) type VI secretion system effector Tse1 peptidoglycanhydrolase [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| NODE_4 length_345275 cov_156.117466 | 38739 | 39215 | tse2 | 0/0 | 100 | 100 | NP_251392 | (tse2) type VI secretion system effector Tse2 [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| NODE_13 length_148835 cov_135.704197 | 69309 | 70535 | tse3 | 0/0 | 100 | 99 | NP_252174 | (tse3) type VI secretion system effector Tse3 glycoside hydrolase [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| NODE_20 length_103396 cov_158.435496 | 86732 | 88663 | vgrG1a | 0/0 | 100 | 100 | NP_248781 | (vgrG1a) type VI secretion system substrate VgrG1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_20 length_103396 cov_158.435496 | 82115 | 84340 | vgrG1b | 0/0 | 100 | 99 | NP_248785 | (vgrG1b) type VI secretion system substrate VgrG1b [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| NODE_25 length_86952 cov_152.345301 | 15674 | 16951 | waaA | 0/0 | 100 | 100 | NP_253675 | (waaA) lipopolysaccharide core biosynthesis protein WaaP [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| NODE_25 length_86952 cov_152.345301 | 43979 | 45046 | waaC | 0/0 | 100 | 99 | NP_253698 | (waaC) 3-deoxy-D-manno-octulosonic-acid (KDO) transferase [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| NODE_25 length_86952 cov_152.345301 | 45043 | 46080 | waaF | 0/0 | 100 | 100 | NP_253699 | (waaF) heptosyltransferase I [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| NODE_25 length_86952 cov_152.345301 | 42861 | 43982 | waaG | 0/0 | 100 | 100 | NP_253697 | (waaG) B-band O-antigen polymerase [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| NODE_25 length_86952 cov_152.345301 | 42058 | 42864 | waaP | 0/0 | 100 | 100 | NP_253696 | (waaP) UDP-glucose:(heptosyl) LPS alpha 13-glucosyltransferase WaaG [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| NODE_3 length_345658 cov_168.996912 | 62971 | 63843 | xcpA/pilD | 0/0 | 100 | 99 | NP_253218 | (xcpA/pilD) type 4 prepilin peptidase PilD [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_72 length_15327 cov_133.961115 | 6747 | 7454 | xcpP | 0/0 | 100 | 100 | NP_251794 | (xcpP) secretion protein XcpP [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_72 length_15327 cov_133.961115 | 4766 | 6742 | xcpQ | 0/0 | 100 | 100 | NP_251795 | (xcpQ) general secretion pathway protein D [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_72 length_15327 cov_133.961115 | 7674 | 9182 | xcpR | 0/0 | 100 | 100 | NP_251793 | (xcpR) general secretion pathway protein E [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_72 length_15327 cov_133.961115 | 9182 | 10399 | xcpS | 0/0 | 100 | 100 | NP_251792 | (xcpS) general secretion pathway protein F [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_72 length_15327 cov_133.961115 | 10404 | 10850 | xcpT | 0/0 | 100 | 100 | NP_251791 | (xcpT) general secretion pathway protein G [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_72 length_15327 cov_133.961115 | 10857 | 11375 | xcpU | 0/0 | 100 | 100 | NP_251790 | (xcpU) general secretion pathway protein H [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_72 length_15327 cov_133.961115 | 11372 | 11761 | xcpV | 0/0 | 100 | 100 | NP_251789 | (xcpV) general secretion pathway protein I [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_72 length_15327 cov_133.961115 | 11758 | 12471 | xcpW | 0/0 | 100 | 100 | NP_251788 | (xcpW) general secretion pathway protein J [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_72 length_15327 cov_133.961115 | 12468 | 13469 | xcpX | 0/0 | 100 | 100 | NP_251787 | (xcpX) general secretion pathway protein K [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_72 length_15327 cov_133.961115 | 13466 | 14614 | xcpY | 0/0 | 100 | 99 | NP_251786 | (xcpY) general secretion pathway protein L [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_72 length_15327 cov_133.961115 | 14616 | 15140 | xcpZ | 0/0 | 100 | 99 | NP_251785 | (xcpZ) general secretion pathway protein M [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
Sample-08
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| NODE_47 length_61105 cov_163.037032 | 19928 | 21097 | alg44 | 0/0 | 100 | 100 | NP_252232 | (alg44) alginate biosynthesis protein Alg8 [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_47 length_61105 cov_163.037032 | 21180 | 22664 | alg8 | 0/0 | 100 | 100 | NP_252231 | (alg8) alginate-c5-mannuronan-epimerase AlgG [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_47 length_61105 cov_163.037032 | 7463 | 8908 | algA | 0/0 | 100 | 100 | NP_252241 | (algA) phosphomannose isomerase / guanosine 5’-diphospho-D-mannose pyrophosphorylase [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_17 length_130165 cov_213.571375 | 114484 | 115833 | algB | 0/0 | 100 | 100 | NP_254170 | (algB) two-component response regulator AlgB [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_31 length_87429 cov_191.449652 | 26848 | 28239 | algC | 0/0 | 100 | 99 | NP_254009 | (algC) phosphomannomutase AlgC [Alginate biosynthesis (CVF522)] [Pseudomonas aeruginosa PAO1] |
| NODE_47 length_61105 cov_163.037032 | 22804 | 24114 | algD | 0/0 | 100 | 100 | NP_252230 | (algD) GDP-mannose 6-dehydrogenase AlgD [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_47 length_61105 cov_163.037032 | 17018 | 18490 | algE | 0/0 | 100 | 100 | NP_252234 | (algE) alginate biosynthetic protein AlgK precursor [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_47 length_61105 cov_163.037032 | 9105 | 9755 | algF | 0/0 | 100 | 100 | NP_252240 | (algF) alginate o-acetyltransferase AlgF [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_47 length_61105 cov_163.037032 | 15366 | 16997 | algG | 0/0 | 100 | 100 | NP_252235 | (algG) outer membrane protein AlgE [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_47 length_61105 cov_163.037032 | 11018 | 12580 | algI | 0/0 | 100 | 99 | NP_252238 | (algI) alginate o-acetyltransferase AlgI [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_47 length_61105 cov_163.037032 | 9828 | 11003 | algJ | 0/0 | 100 | 100 | NP_252239 | (algJ) alginate o-acetyltransferase AlgJ [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_47 length_61105 cov_163.037032 | 18487 | 19914 | algK | 0/0 | 100 | 100 | NP_252233 | (algK) alginate biosynthesis protein Alg44 [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_47 length_61105 cov_163.037032 | 12822 | 13925 | algL | 0/0 | 100 | 100 | NP_252237 | (algL) poly(beta-d-mannuronate) lyase precursor AlgL [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_51 length_59268 cov_196.658124 | 41311 | 42369 | algP/algR3 | 2/24 | 99 | 97 | NP_253940 | (algP/algR3) alginate regulatory protein AlgP [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_51 length_59268 cov_196.658124 | 43186 | 43668 | algQ | 0/0 | 100 | 98 | NP_253942 | (algQ) Alginate regulatory protein AlgQ [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_51 length_59268 cov_196.658124 | 48813 | 49559 | algR | 0/0 | 100 | 100 | NP_253948 | (algR) alginate biosynthesis regulatory protein AlgR [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_24 length_99172 cov_161.872062 | 60576 | 61157 | algU | 0/0 | 100 | 100 | NP_249453 | (algU) alginate biosynthesis protein AlgZ/FimS [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_8 length_217613 cov_172.909560 | 30379 | 31548 | algW | 0/0 | 100 | 100 | NP_253136 | (algW) AlgW protein [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| NODE_47 length_61105 cov_163.037032 | 13929 | 15353 | algX | 0/0 | 100 | 100 | NP_252236 | (algX) alginate biosynthesis protein AlgX [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_51 length_59268 cov_196.658124 | 49564 | 50640 | algZ | 0/0 | 100 | 100 | NP_253949 | (algZ) sigma factor AlgU [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_64 length_43685 cov_138.697257 | 23671 | 25110 | aprA | 0/0 | 100 | 100 | NP_249940 | (aprA) alkaline metalloproteinase precursor [Alkaline protease (VF0090)] [Pseudomonas aeruginosa PAO1] |
| NODE_10 length_166586 cov_12.973713 | 157122 | 157667 | bslA/yuaB | 0/0 | 100 | 99 | NP_390986 | (bslA/yuaB) hydrophobin BslA [BslA (VF0411)] [Bacillus subtilis subsp. subtilis str. 168] |
| NODE_169 length_6049 cov_153.663094 | 3026 | 4057 | chpB | 0/0 | 100 | 100 | NP_249105 | (chpB) probable methylesterase [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_169 length_6049 cov_153.663094 | 2523 | 3029 | chpC | 0/0 | 100 | 99 | NP_249106 | (chpC) probable chemotaxis protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_169 length_6049 cov_153.663094 | 1721 | 2515 | chpD | 0/0 | 100 | 99 | NP_249107 | (chpD) probable transcriptional regulator [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_169 length_6049 cov_153.663094 | 1034 | 1645 | chpE | 0/0 | 100 | 99 | NP_249108 | (chpE) probable chemotaxis protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_96 length_26484 cov_178.274208 | 11817 | 14525 | clpV1 | 0/0 | 100 | 100 | NP_248780 | (clpV1) type VI secretion system AAA+ family ATPase [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_37 length_75369 cov_171.442637 | 9504 | 10865 | exoS | 0/0 | 100 | 100 | NP_252530 | (exoS) type III secretion system effector ExoS ADP ribosyltransferase activity and GTPase-activating protein activity [ExoS (VF0096)] [Pseudomonas aeruginosa PAO1] |
| NODE_117 length_16753 cov_210.325977 | 4483 | 5856 | exoT | 0/0 | 100 | 99 | NP_248734 | (exoT) type III secretion system effector ExoT ADP ribosyltransferase activity and GTPase-activating protein activity [ExoT (VF0097)] [Pseudomonas aeruginosa PAO1] |
| NODE_9 length_183683 cov_159.553484 | 170581 | 171417 | exsA | 0/0 | 100 | 100 | NP_250404 | (exsA) type III secretion system regulatory protein ExsA [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_9 length_183683 cov_159.553484 | 171715 | 172128 | exsB | 0/0 | 100 | 99 | NP_250403 | (exsB) type III secretion system piolitin ExsB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_9 length_183683 cov_159.553484 | 172391 | 172828 | exsC | 0/0 | 100 | 100 | NP_250401 | (exsC) type III secretion system regulatory protein ExsC [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_9 length_183683 cov_159.553484 | 169653 | 170483 | exsD | 0/0 | 100 | 100 | NP_250405 | (exsD) type III secretion system regulatory protein ExsD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_9 length_183683 cov_159.553484 | 172137 | 172382 | exsE | 0/0 | 100 | 99 | NP_250402 | (exsE) type III secretion system regulatory protein ExsE [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_96 length_26484 cov_178.274208 | 22990 | 24495 | fha1 | 1/12 | 100 | 98 | NP_248771 | (fha1) type VI secretion system forkhead-associated protein Fha1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_13 length_140748 cov_189.320009 | 61801 | 62310 | fimT | 0/0 | 100 | 98 | NP_253239 | (fimT) type 4 fimbrial biogenesis protein FimT [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_13 length_140748 cov_189.320009 | 62416 | 62922 | fimU | 0/0 | 100 | 100 | NP_253240 | (fimU) type 4 fimbrial biogenesis protein FimU [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_146 length_9643 cov_155.825842 | 4344 | 7118 | fimV | 1/15 | 100 | 99 | NP_251805 | (fimV) putative Type IV pili related protein [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_28 length_91222 cov_150.946031 | 48586 | 49428 | fleN | 0/0 | 100 | 100 | NP_250145 | (fleN) flagellar synthesis regulator FleN [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_18 length_129369 cov_161.634618 | 53385 | 54857 | fleQ | 0/0 | 100 | 99 | NP_249788 | (fleQ) transcriptional regulator FleQ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_18 length_129369 cov_161.634618 | 56183 | 57604 | fleR | 0/0 | 100 | 99 | NP_249790 | (fleR) two-component response regulator [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_18 length_129369 cov_161.634618 | 54970 | 56178 | fleS | 0/0 | 100 | 99 | NP_249789 | (fleS) two-component sensor [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_104 length_21335 cov_157.570797 | 11201 | 11899 | flgA | 0/0 | 100 | 100 | NP_252040 | (flgA) flagellar basal body P-ring biosynthesis protein FlgA [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_18 length_129369 cov_161.634618 | 26550 | 26957 | flgB | 0/0 | 100 | 100 | NP_249768 | (flgB) flagellar basal body rod protein FlgB [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_18 length_129369 cov_161.634618 | 26963 | 27403 | flgC | 0/0 | 100 | 100 | NP_249769 | (flgC) flagellar basal-body rod protein FlgC [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_18 length_129369 cov_161.634618 | 27416 | 28129 | flgD | 0/0 | 100 | 100 | NP_249770 | (flgD) flagellar basal-body rod modification protein FlgD [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_18 length_129369 cov_161.634618 | 28157 | 29545 | flgE | 0/0 | 100 | 100 | NP_249771 | (flgE) flagellar hook protein FlgE [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_18 length_129369 cov_161.634618 | 29763 | 30512 | flgF | 0/0 | 100 | 100 | NP_249772 | (flgF) flagellar basal-body rod protein FlgF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_18 length_129369 cov_161.634618 | 30559 | 31344 | flgG | 0/0 | 100 | 100 | NP_249773 | (flgG) flagellar basal-body rod protein FlgG [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_18 length_129369 cov_161.634618 | 31390 | 32085 | flgH | 0/0 | 100 | 100 | NP_249774 | (flgH) flagellar L-ring protein precursor FlgH [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_18 length_129369 cov_161.634618 | 32097 | 33206 | flgI | 0/0 | 100 | 100 | NP_249775 | (flgI) flagellar P-ring protein precursor FlgI [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_18 length_129369 cov_161.634618 | 33217 | 34419 | flgJ | 0/0 | 100 | 100 | NP_249776 | (flgJ) flagellar rod assembly protein/muramidase FlgJ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_104 length_21335 cov_157.570797 | 12044 | 12367 | flgM | 0/0 | 100 | 100 | NP_252041 | (flgM) negative regulator of flagellin synthesis [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_104 length_21335 cov_157.570797 | 12422 | 12892 | flgN | 0/0 | 100 | 100 | NP_252042 | (flgN) flagella synthesis protein FlgN [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_28 length_91222 cov_150.946031 | 50940 | 53063 | flhA | 0/0 | 100 | 100 | NP_250143 | (flhA) flagellar biosynthesis protein FlhA [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_28 length_91222 cov_150.946031 | 55919 | 57055 | flhB | 0/0 | 100 | 100 | NP_250140 | (flhB) flagellar biosynthetic protein FlhB [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_28 length_91222 cov_150.946031 | 49567 | 50856 | flhF | 0/0 | 100 | 100 | NP_250144 | (flhF) flagellar biosynthesis protein FlhF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_28 length_91222 cov_150.946031 | 47846 | 48589 | fliA | 0/0 | 100 | 100 | NP_250146 | (fliA) flagellar biosynthesis sigma factor FliA [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_18 length_129369 cov_161.634618 | 57851 | 58180 | fliE | 0/0 | 100 | 99 | NP_249791 | (fliE) flagellar hook-basal body complex protein FliE [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_18 length_129369 cov_161.634618 | 58203 | 59999 | fliF | 0/0 | 100 | 99 | NP_249792 | (fliF) flagellar M-ring protein FliF [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_18 length_129369 cov_161.634618 | 60005 | 61021 | fliG | 0/0 | 100 | 100 | NP_249793 | (fliG) flagellar motor switch protein G [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_18 length_129369 cov_161.634618 | 61023 | 61829 | fliH | 0/0 | 100 | 100 | NP_249794 | (fliH) flagellar assembly protein H [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_18 length_129369 cov_161.634618 | 61819 | 63174 | fliI | 0/0 | 100 | 99 | NP_249795 | (fliI) flagellum-specific ATP synthase FliI [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_18 length_129369 cov_161.634618 | 63188 | 63631 | fliJ | 0/0 | 100 | 100 | NP_249796 | (fliJ) flagellar protein FliJ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_28 length_91222 cov_150.946031 | 61611 | 62894 | fliK | 0/0 | 100 | 99 | NP_250132 | (fliK) flagellar hook-length control protein FliK [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_28 length_91222 cov_150.946031 | 60846 | 61367 | fliL | 0/0 | 100 | 100 | NP_250133 | (fliL) flagellar basal body protein FliL [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_28 length_91222 cov_150.946031 | 59867 | 60838 | fliM | 0/0 | 100 | 100 | NP_250134 | (fliM) flagellar motor switch protein FliM [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_28 length_91222 cov_150.946031 | 59366 | 59839 | fliN | 0/0 | 100 | 100 | NP_250135 | (fliN) flagellar motor switch protein FliN [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_28 length_91222 cov_150.946031 | 58912 | 59364 | fliO | 0/0 | 100 | 99 | NP_250136 | (fliO) flagellar protein FliO [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_28 length_91222 cov_150.946031 | 58148 | 58915 | fliP | 0/0 | 100 | 100 | NP_250137 | (fliP) flagellar biosynthetic protein FliP [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_28 length_91222 cov_150.946031 | 57834 | 58103 | fliQ | 0/0 | 100 | 100 | NP_250138 | (fliQ) flagellar biosynthetic protein FliQ [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_28 length_91222 cov_150.946031 | 57058 | 57834 | fliR | 0/0 | 100 | 99 | NP_250139 | (fliR) flagellar biosynthetic protein FliR [Flagella (VF0273)] [Pseudomonas aeruginosa PAO1] |
| NODE_173 length_5286 cov_120.979267 | 1509 | 3671 | fptA | 0/0 | 100 | 100 | NP_252911 | (fptA) Fe(III)-pyochelin receptor precursor [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_96 length_26484 cov_178.274208 | 18908 | 19396 | hcp1 | 0/0 | 100 | 100 | NP_248775 | (hcp1) type VI secretion system substrate Hcp1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_96 length_26484 cov_178.274208 | 21588 | 22622 | hsiA1 | 0/0 | 100 | 100 | NP_248772 | (hsiA1) type VI secretion system hcp secretion island protein HsiA1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_96 length_26484 cov_178.274208 | 20981 | 21499 | hsiB1/vipA | 0/0 | 100 | 100 | NP_248773 | (hsiB1/vipA) type VI secretion system tubule-forming protein VipA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_96 length_26484 cov_178.274208 | 19472 | 20968 | hsiC1/vipB | 0/0 | 100 | 100 | NP_248774 | (hsiC1/vipB) type VI secretion system tubule-forming protein VipB [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_96 length_26484 cov_178.274208 | 17895 | 18740 | hsiE1 | 0/0 | 100 | 100 | NP_248776 | (hsiE1) type VI secretion system hcp secretion island protein HsiE1 interacting with HsiB1 to form a novel subcomplex of the T6SS [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_96 length_26484 cov_178.274208 | 17384 | 17893 | hsiF1 | 0/0 | 100 | 100 | NP_248777 | (hsiF1) type VI secretion system hcp secretion island protein HsiF1 a gp25-like protein but not exhibit lysozyme activity [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_96 length_26484 cov_178.274208 | 15528 | 17387 | hsiG1 | 0/0 | 100 | 100 | NP_248778 | (hsiG1) type VI secretion system hcp secretion island protein HsiG1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_96 length_26484 cov_178.274208 | 14518 | 15564 | hsiH1 | 0/0 | 100 | 100 | NP_248779 | (hsiH1) type VI secretion system hcp secretion island protein HsiH1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_96 length_26484 cov_178.274208 | 25020 | 26354 | hsiJ1 | 0/0 | 100 | 100 | NP_248769 | (hsiJ1) type VI secretion system hcp secretion island protein HsiJ1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_162 length_6986 cov_156.783760 | 2279 | 5587 | icmF1/tssM1 | 1/3 | 100 | 99 | NP_248767 | (icmF1/tssM1) type VI secretion system protein IcmF1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_174 length_5239 cov_120.840953 | 40 | 1296 | lasA | 0/0 | 100 | 99 | NP_250562 | (lasA) LasA protease precursor [LasA (VF0088)] [Pseudomonas aeruginosa PAO1] |
| NODE_44 length_63322 cov_177.647498 | 40605 | 42101 | lasB | 0/0 | 100 | 100 | NP_252413 | (lasB) elastase LasB [LasB (VF0087)] [Pseudomonas aeruginosa PAO1] |
| NODE_28 length_91222 cov_150.946031 | 73531 | 74136 | lasI | 0/0 | 100 | 100 | NP_250123 | (lasI) autoinducer synthesis protein LasI [Quorum sensing (VF0093)] [Pseudomonas aeruginosa PAO1] |
| NODE_96 length_26484 cov_178.274208 | 24540 | 25004 | lip1 | 0/0 | 100 | 100 | NP_248770 | (lip1) lipoprotein [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_66 length_43419 cov_128.615938 | 4523 | 4741 | mbtH-like | 0/0 | 100 | 100 | NP_251102 | (mbtH-like) MbtH-like protein from the pyoverdine cluster [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_83 length_33718 cov_171.414702 | 28651 | 29502 | motA | 0/0 | 100 | 100 | NP_253641 | (motA) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_83 length_33718 cov_171.414702 | 29522 | 30565 | motB | 0/0 | 100 | 100 | NP_253640 | (motB) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_28 length_91222 cov_150.946031 | 42107 | 42847 | motC | 0/0 | 100 | 100 | NP_250151 | (motC) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_28 length_91222 cov_150.946031 | 41204 | 42094 | motD | 0/0 | 100 | 99 | NP_250152 | (motD) flagellar motor protein [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_47 length_61105 cov_163.037032 | 39979 | 40944 | motY | 0/0 | 100 | 100 | NP_252216 | (motY) probable outer membrane protein precursor [Deoxyhexose linking sugar 209 Da capping structure (AI138)] [Pseudomonas aeruginosa PAO1] |
| NODE_24 length_99172 cov_161.872062 | 59961 | 60544 | mucA | 1/1 | 100 | 99 | NP_249454 | (mucA) alkaline metalloproteinase precursor [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_24 length_99172 cov_161.872062 | 59002 | 59952 | mucB | 0/0 | 100 | 100 | NP_249455 | (mucB) anti-sigma factor MucA inhibitor of alg gene expression [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_24 length_99172 cov_161.872062 | 58550 | 59005 | mucC | 0/0 | 100 | 100 | NP_249456 | (mucC) negative regulator for alginate biosynthesis MucB [Alginate (VF0091)] [Pseudomonas aeruginosa PAO1] |
| NODE_24 length_99172 cov_161.872062 | 57086 | 58510 | mucD | 0/0 | 100 | 100 | NP_249457 | (mucD) serine protease MucD precursor [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| NODE_91 length_29111 cov_167.760006 | 24878 | 25147 | mucE | 0/0 | 100 | 100 | NP_252722 | (mucE) small envelope protein MucE [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| NODE_14 length_139775 cov_173.618098 | 79497 | 80849 | mucP | 0/0 | 100 | 100 | NP_252339 | (mucP) metalloprotease protease [Alginate regulation (CVF523)] [Pseudomonas aeruginosa PAO1] |
| NODE_89 length_30382 cov_188.730276 | 7270 | 8700 | pchA | 0/0 | 100 | 99 | NP_252921 | (pchA) salicylate biosynthesis isochorismate synthase PchA [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_89 length_30382 cov_188.730276 | 6968 | 7273 | pchB | 0/0 | 100 | 100 | NP_252920 | (pchB) salicylate biosynthesis protein PchB [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_89 length_30382 cov_188.730276 | 6213 | 6968 | pchC | 0/0 | 100 | 99 | NP_252919 | (pchC) pyochelin biosynthetic protein PchC [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_89 length_30382 cov_188.730276 | 4573 | 6216 | pchD | 0/0 | 100 | 99 | NP_252918 | (pchD) pyochelin biosynthesis protein PchD [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_199 length_2143 cov_69.569216 | 185 | 1234 | pchG | 0/0 | 100 | 99 | NP_252914 | (pchG) pyochelin biosynthetic protein PchG [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_89 length_30382 cov_188.730276 | 3453 | 4343 | pchR | 0/0 | 100 | 100 | NP_252917 | (pchR) transcriptional regulator PchR [Pyochelin (VF0095)] [Pseudomonas aeruginosa PAO1] |
| NODE_9 length_183683 cov_159.553484 | 180341 | 180619 | pcr1 | 0/0 | 100 | 100 | NP_250390 | (pcr1) type III secretion system protein Pcr1 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_9 length_183683 cov_159.553484 | 179983 | 180354 | pcr2 | 0/0 | 100 | 99 | NP_250391 | (pcr2) type III secretion system protein Pcr2 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_9 length_183683 cov_159.553484 | 179621 | 179986 | pcr3 | 0/0 | 100 | 100 | NP_250392 | (pcr3) type III secretion system protein Pcr3 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_9 length_183683 cov_159.553484 | 179287 | 179616 | pcr4 | 0/0 | 100 | 100 | NP_250393 | (pcr4) type III secretion system protein Pcr4 [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_9 length_183683 cov_159.553484 | 177170 | 179290 | pcrD | 0/0 | 100 | 100 | NP_250394 | (pcrD) type III secretion system protein PcrD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_9 length_183683 cov_159.553484 | 176415 | 176711 | pcrG | 0/0 | 100 | 100 | NP_250396 | (pcrG) type III secretion system cytoplasmic regulator PcrG [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_9 length_183683 cov_159.553484 | 175006 | 175512 | pcrH | 1/3 | 100 | 99 | NP_250398 | (pcrH) type III secretion system regulatory protein PcrH [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_9 length_183683 cov_159.553484 | 176739 | 177173 | pcrR | 0/0 | 100 | 100 | NP_250395 | (pcrR) type III secretion system regulatory protein PcrR [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_9 length_183683 cov_159.553484 | 175521 | 176405 | pcrV | 0/0 | 100 | 100 | NP_250397 | (pcrV) type III secretion system hydrophilic translocator needle tip protein PcrV [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_74 length_38193 cov_146.839333 | 285 | 727 | phzA1 | 0/0 | 91 | 97 | NP_252899 | (phzA1) phenazine biosynthesis protein PhzA [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| NODE_180 length_4229 cov_88.891137 | 3113 | 3757 | phzG1 | 0/0 | 100 | 100 | NP_252906 | (phzG1) phenazine biosynthesis protein PhzG pyridoxamine 5’-phosphate oxidase [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| NODE_99 length_24239 cov_167.620520 | 20885 | 22717 | phzH | 0/0 | 100 | 100 | NP_248741 | (phzH) phenazine-modifying enzyme [Phenazines biosynthesis (CVF536)] [Pseudomonas aeruginosa PAO1] |
| NODE_112 length_18145 cov_150.940890 | 882 | 1886 | phzM | 0/0 | 100 | 100 | NP_252898 | (phzM) phenazine-specific methyltransferase PhzM (adenosylmethionine dependent methyltransferase) [Pyocyanin (VF0100)] [Pseudomonas aeruginosa PAO1] |
| NODE_190 length_3018 cov_139.355321 | 1502 | 2710 | phzS | 0/0 | 100 | 100 | NP_252907 | (phzS) flavin dependent hydroxylase PhzS [Pyocyanin (VF0100)] [Pseudomonas aeruginosa PAO1] |
| NODE_13 length_140748 cov_189.320009 | 68724 | 69149 | pilE | 0/0 | 100 | 100 | NP_253246 | (pilE) type 4 fimbrial biogenesis protein PilE [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_38 length_74548 cov_177.141787 | 47811 | 48569 | pilF | 0/0 | 100 | 100 | NP_252494 | (pilF) type 4 fimbrial biogenesis protein PilF [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_39 length_71341 cov_177.601412 | 9514 | 9921 | pilG | 0/0 | 100 | 100 | NP_249099 | (pilG) twitching motility protein PilG [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_39 length_71341 cov_177.601412 | 9102 | 9467 | pilH | 0/0 | 100 | 100 | NP_249100 | (pilH) twitching motility protein PilH [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_39 length_71341 cov_177.601412 | 8515 | 9051 | pilI | 0/0 | 100 | 100 | NP_249101 | (pilI) twitching motility protein PilI [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_39 length_71341 cov_177.601412 | 6382 | 8430 | pilJ | 0/0 | 100 | 100 | NP_249102 | (pilJ) twitching motility protein PilJ [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_39 length_71341 cov_177.601412 | 5446 | 6321 | pilK | 0/0 | 100 | 100 | NP_249103 | (pilK) methyltransferase PilK [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_30 length_88788 cov_180.849421 | 6852 | 7916 | pilM | 0/0 | 100 | 100 | NP_253731 | (pilM) type IV pilus inner membrane platform protein PilM [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_30 length_88788 cov_180.849421 | 6256 | 6852 | pilN | 0/0 | 100 | 100 | NP_253730 | (pilN) type IV pilus inner membrane platform protein PilN [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_30 length_88788 cov_180.849421 | 5636 | 6259 | pilO | 0/0 | 100 | 100 | NP_253729 | (pilO) type IV pilus inner membrane platform protein PilO [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_30 length_88788 cov_180.849421 | 5115 | 5639 | pilP | 0/0 | 100 | 100 | NP_253728 | (pilP) type IV pilus biogenesis protein PilP [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_30 length_88788 cov_180.849421 | 2917 | 5061 | pilQ | 0/0 | 100 | 97 | NP_253727 | (pilQ) type 4 fimbrial biogenesis protein PilQ [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_13 length_140748 cov_189.320009 | 59189 | 60526 | pilR | 0/0 | 100 | 99 | NP_253237 | (pilR) two-component response regulator PilR [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_13 length_140748 cov_189.320009 | 57582 | 59174 | pilS | 0/0 | 100 | 100 | NP_253236 | (pilS) two-component sensor PilS [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_39 length_71341 cov_177.601412 | 21956 | 22990 | pilT | 0/0 | 100 | 100 | NP_249086 | (pilT) twitching motility protein PilT [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_39 length_71341 cov_177.601412 | 20630 | 21778 | pilU | 0/0 | 100 | 100 | NP_249087 | (pilU) twitching motility protein PilU [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_13 length_140748 cov_189.320009 | 62913 | 63470 | pilV | 0/0 | 100 | 100 | NP_253241 | (pilV) type IV pilus biogenesis protein PilV [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_13 length_140748 cov_189.320009 | 63467 | 64291 | pilW | 0/0 | 100 | 100 | NP_253242 | (pilW) type IV fimbrial biogenesis protein PilW [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_13 length_140748 cov_189.320009 | 64288 | 64875 | pilX | 0/0 | 100 | 100 | NP_253243 | (pilX) type 4 fimbrial biogenesis protein PilX [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_13 length_140748 cov_189.320009 | 64887 | 68378 | pilY1 | 10/30 | 100 | 92 | NP_253244 | (pilY1) type 4 fimbrial biogenesis protein PilY1 [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_13 length_140748 cov_189.320009 | 68380 | 68727 | pilY2 | 0/0 | 100 | 100 | NP_253245 | (pilY2) type 4 fimbrial biogenesis protein PilY2 [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_22 length_107556 cov_168.477070 | 35071 | 37263 | plcH | 0/0 | 100 | 100 | NP_249535 | (plcH) hemolytic phospholipase C precursor [PLC (VF0092)] [Pseudomonas aeruginosa PAO1] |
| NODE_9 length_183683 cov_159.553484 | 173853 | 175025 | popB | 0/0 | 100 | 100 | NP_250399 | (popB) type III secretion system hydrophobic translocator pore protein PopB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_9 length_183683 cov_159.553484 | 172954 | 173841 | popD | 0/0 | 100 | 100 | NP_250400 | (popD) type III secretion system hydrophobic translocator pore protein PopD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_9 length_183683 cov_159.553484 | 180600 | 181466 | popN | 0/0 | 100 | 99 | NP_250389 | (popN) type III secretion system outer membrane protein PopN [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_162 length_6986 cov_156.783760 | 864 | 1592 | pppA | 0/0 | 100 | 100 | NP_248765 | (pppA) Pseudomonas protein phosphatase PppA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_9 length_183683 cov_159.553484 | 169197 | 169619 | pscB | 0/0 | 100 | 100 | NP_250406 | (pscB) type III secretion system protein PscB [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_9 length_183683 cov_159.553484 | 167395 | 169197 | pscC | 0/0 | 100 | 99 | NP_250407 | (pscC) type III secretion system secretin PscC [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_9 length_183683 cov_159.553484 | 166095 | 167393 | pscD | 0/0 | 100 | 100 | NP_250408 | (pscD) type III secretion system basal body protein PscD [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_9 length_183683 cov_159.553484 | 165929 | 166132 | pscE | 0/0 | 100 | 99 | NP_250409 | (pscE) type III secretion system cochaperone PscE for PscG [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_9 length_183683 cov_159.553484 | 165669 | 165926 | pscF | 0/0 | 100 | 100 | NP_250410 | (pscF) type III secretion system needle filament protein PscF [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_9 length_183683 cov_159.553484 | 165319 | 165666 | pscG | 0/0 | 100 | 100 | NP_250411 | (pscG) type III secretion system chaperone PscG for PscF [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_9 length_183683 cov_159.553484 | 164891 | 165322 | pscH | 0/0 | 100 | 100 | NP_250412 | (pscH) type III secretion system protein PscH [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_9 length_183683 cov_159.553484 | 164553 | 164891 | pscI | 0/0 | 100 | 100 | NP_250413 | (pscI) type III secretion system inner rod protein PscI [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_9 length_183683 cov_159.553484 | 163810 | 164556 | pscJ | 0/0 | 100 | 99 | NP_250414 | (pscJ) type III secretion system inner MS ring protein [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_9 length_183683 cov_159.553484 | 163181 | 163801 | pscK | 1/6 | 99 | 98 | NP_250415 | (pscK) type III secretion system protein PscK [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_9 length_183683 cov_159.553484 | 162558 | 163202 | pscL | 0/0 | 100 | 100 | NP_250416 | (pscL) type III secretion systemt protein PscL [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_9 length_183683 cov_159.553484 | 181657 | 182979 | pscN | 0/0 | 100 | 99 | NP_250388 | (pscN) type III secretion system ATPase PscN [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_9 length_183683 cov_159.553484 | 182976 | 183452 | pscO | 0/0 | 100 | 99 | NP_250387 | (pscO) type III secretion system protein PscO [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_20 length_117545 cov_149.944078 | 853 | 1782 | pscQ | 0/0 | 100 | 99 | NP_250385 | (pscQ) type III secretion system protein PscQ [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_20 length_117545 cov_149.944078 | 1779 | 2432 | pscR | 0/0 | 100 | 100 | NP_250384 | (pscR) type III secretion system protein PscR [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_20 length_117545 cov_149.944078 | 2435 | 2701 | pscS | 0/0 | 100 | 99 | NP_250383 | (pscS) type III secretion system protein PscS [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_20 length_117545 cov_149.944078 | 2698 | 3486 | pscT | 0/0 | 100 | 99 | NP_250382 | (pscT) type III secretion system protein PscT [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_20 length_117545 cov_149.944078 | 3483 | 4532 | pscU | 0/0 | 100 | 100 | NP_250381 | (pscU) type III secretion system protein PscU [TTSS (VF0083)] [Pseudomonas aeruginosa PAO1] |
| NODE_92 length_28559 cov_171.991890 | 23686 | 25017 | pvdA | 0/0 | 100 | 100 | NP_251076 | (pvdA) L-ornithine N5-oxygenase PvdA [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1] |
| NODE_92 length_28559 cov_171.991890 | 10901 | 11721 | pvdF | 0/0 | 99 | 90 | NP_251086 | (pvdF) pyoverdine synthetase F [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_66 length_43419 cov_128.615938 | 30886 | 31650 | pvdG | 0/0 | 100 | 100 | NP_251115 | (pvdG) pyoverdine biosynthesis protein PvdG [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_66 length_43419 cov_128.615938 | 4819 | 6228 | pvdH | 0/0 | 100 | 99 | NP_251103 | (pvdH) diaminobutyrate-2-oxoglutarate aminotransferase PvdH [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_66 length_43419 cov_128.615938 | 17788 | 30813 | pvdL | 1/3 | 100 | 99 | NP_251114 | (pvdL) peptide synthase PvdL [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_92 length_28559 cov_171.991890 | 12670 | 13947 | pvdN | 4/8 | 99 | 91 | NP_251084 | (pvdN) pyoverdine biosynthesis protein PvdN [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_92 length_28559 cov_171.991890 | 11787 | 12641 | pvdO | 0/0 | 100 | 98 | NP_251085 | (pvdO) pyoverdine biosynthesis protein PvdO [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_92 length_28559 cov_171.991890 | 25140 | 27428 | pvdQ | 0/0 | 100 | 99 | NP_251075 | (pvdQ) 3-oxo-C12-homoserine lactone acylase PvdQ [pyoverdine (IA001)] [Pseudomonas aeruginosa PAO1] |
| NODE_66 length_43419 cov_128.615938 | 32294 | 32857 | pvdS | 0/0 | 100 | 100 | NP_251116 | (pvdS) extracytoplasmic-function sigma-70 factor [Pyoverdine (VF0094)] [Pseudomonas aeruginosa PAO1] |
| NODE_77 length_36347 cov_158.853267 | 28305 | 29192 | rhlA | 0/0 | 100 | 99 | NP_252169 | (rhlA) rhamnosyltransferase chain A [Rhamnolipid (VF0089)] [Pseudomonas aeruginosa PAO1] |
| NODE_77 length_36347 cov_158.853267 | 26959 | 28239 | rhlB | 0/0 | 100 | 99 | NP_252168 | (rhlB) rhamnosyltransferase chain B [Rhamnolipid (VF0089)] [Pseudomonas aeruginosa PAO1] |
| NODE_18 length_129369 cov_161.634618 | 87895 | 88872 | rhlC | 0/0 | 100 | 99 | NP_249821 | (rhlC) rhamnosyltransferase 2 [Rhamnolipid biosynthesis (CVF524)] [Pseudomonas aeruginosa PAO1] |
| NODE_77 length_36347 cov_158.853267 | 25323 | 25928 | rhlI | 0/0 | 100 | 99 | NP_252166 | (rhlI) autoinducer synthesis protein RhlL [Quorum sensing (VF0093)] [Pseudomonas aeruginosa PAO1] |
| NODE_162 length_6986 cov_156.783760 | 1602 | 2282 | tagF/pppB | 0/0 | 100 | 100 | NP_248766 | (tagF/pppB) Pseudomonas protein phosphatase PppB [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_99 length_24239 cov_167.620520 | 5702 | 6616 | tagQ | 0/0 | 100 | 100 | NP_248760 | (tagQ) type VI secretiona ssociated protein TagQ outer membrane lipoprotein [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| NODE_99 length_24239 cov_167.620520 | 3928 | 5640 | tagR | 0/0 | 100 | 100 | NP_248761 | (tagR) type IV secretion associated protein TagR positively regulates PpkA [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_99 length_24239 cov_167.620520 | 2736 | 3935 | tagS | 0/0 | 100 | 99 | NP_248762 | (tagS) type IV secretion associated protein TagS forming a stable inner membrane complex with TagT [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_99 length_24239 cov_167.620520 | 2017 | 2736 | tagT | 0/0 | 100 | 99 | NP_248763 | (tagT) type six secretion associated protein TagT ATP-binding component of ABC transporter [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_18 length_129369 cov_161.634618 | 106386 | 108302 | toxA | 0/0 | 100 | 100 | NP_249839 | (toxA) exotoxin A precursor [ExoA (VF0086)] [Pseudomonas aeruginosa PAO1] |
| NODE_9 length_183683 cov_159.553484 | 24337 | 24801 | tse1 | 0/0 | 100 | 100 | NP_250535 | (tse1) type VI secretion system effector Tse1 peptidoglycanhydrolase [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| NODE_50 length_59580 cov_150.603146 | 41057 | 41533 | tse2 | 0/0 | 100 | 99 | NP_251392 | (tse2) type VI secretion system effector Tse2 [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| NODE_77 length_36347 cov_158.853267 | 34462 | 35688 | tse3 | 0/0 | 100 | 99 | NP_252174 | (tse3) type VI secretion system effector Tse3 glycoside hydrolase [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| NODE_96 length_26484 cov_178.274208 | 9839 | 11770 | vgrG1a | 0/0 | 100 | 100 | NP_248781 | (vgrG1a) type VI secretion system substrate VgrG1 [HSI-I (VF0334)] [Pseudomonas aeruginosa PAO1] |
| NODE_96 length_26484 cov_178.274208 | 5222 | 7447 | vgrG1b | 0/0 | 100 | 98 | NP_248785 | (vgrG1b) type VI secretion system substrate VgrG1b [HSI-1 (Hcp-secretion island 1) (SS178)] [Pseudomonas aeruginosa PAO1] |
| NODE_60 length_51087 cov_173.616683 | 34529 | 35806 | waaA | 0/0 | 100 | 100 | NP_253675 | (waaA) lipopolysaccharide core biosynthesis protein WaaP [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| NODE_60 length_51087 cov_173.616683 | 8774 | 9841 | waaC | 0/0 | 100 | 100 | NP_253698 | (waaC) 3-deoxy-D-manno-octulosonic-acid (KDO) transferase [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| NODE_60 length_51087 cov_173.616683 | 7740 | 8777 | waaF | 0/0 | 100 | 100 | NP_253699 | (waaF) heptosyltransferase I [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| NODE_60 length_51087 cov_173.616683 | 9838 | 10959 | waaG | 0/0 | 100 | 100 | NP_253697 | (waaG) B-band O-antigen polymerase [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| NODE_60 length_51087 cov_173.616683 | 10956 | 11762 | waaP | 0/0 | 100 | 100 | NP_253696 | (waaP) UDP-glucose:(heptosyl) LPS alpha 13-glucosyltransferase WaaG [LPS (VF0085)] [Pseudomonas aeruginosa PAO1] |
| NODE_13 length_140748 cov_189.320009 | 36953 | 37825 | xcpA/pilD | 0/0 | 100 | 100 | NP_253218 | (xcpA/pilD) type 4 prepilin peptidase PilD [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1] |
| NODE_68 length_41892 cov_149.825254 | 34432 | 35139 | xcpP | 0/0 | 100 | 100 | NP_251794 | (xcpP) secretion protein XcpP [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_68 length_41892 cov_149.825254 | 35144 | 37120 | xcpQ | 0/0 | 100 | 100 | NP_251795 | (xcpQ) general secretion pathway protein D [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_68 length_41892 cov_149.825254 | 32704 | 34212 | xcpR | 0/0 | 100 | 99 | NP_251793 | (xcpR) general secretion pathway protein E [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_68 length_41892 cov_149.825254 | 31487 | 32704 | xcpS | 0/0 | 100 | 100 | NP_251792 | (xcpS) general secretion pathway protein F [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_68 length_41892 cov_149.825254 | 31036 | 31482 | xcpT | 0/0 | 100 | 100 | NP_251791 | (xcpT) general secretion pathway protein G [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_68 length_41892 cov_149.825254 | 30511 | 31029 | xcpU | 0/0 | 100 | 100 | NP_251790 | (xcpU) general secretion pathway protein H [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_68 length_41892 cov_149.825254 | 30125 | 30514 | xcpV | 0/0 | 100 | 99 | NP_251789 | (xcpV) general secretion pathway protein I [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_68 length_41892 cov_149.825254 | 29415 | 30128 | xcpW | 0/0 | 100 | 99 | NP_251788 | (xcpW) general secretion pathway protein J [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_68 length_41892 cov_149.825254 | 28417 | 29418 | xcpX | 0/0 | 100 | 99 | NP_251787 | (xcpX) general secretion pathway protein K [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_68 length_41892 cov_149.825254 | 27272 | 28420 | xcpY | 0/0 | 100 | 100 | NP_251786 | (xcpY) general secretion pathway protein L [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
| NODE_68 length_41892 cov_149.825254 | 26746 | 27270 | xcpZ | 0/0 | 100 | 99 | NP_251785 | (xcpZ) general secretion pathway protein M [xcp secretion system (VF0084)] [Pseudomonas aeruginosa PAO1] |
Citation
Narciso Martin Quijada, David Rodriguez-Lazaro, Jose Maria Eiros, Marta Hernandez (2019). TORMES: an automated pipeline for whole bacterial genome analysis. Bioinformatics, 35(21), 4207–4212, https://doi.org/10.1093/bioinformatics/btz220.
This is a pipeline that relies in many different software and databases that should be cited when using TORMES. The following software and databases were used for this analysis:
- GNU Parallel, O. Tange, 2018
- Prinseq, R. Schmieder and R. Edwards, 2011
- SPAdes, A. Bankevich et al., 2012
- QUAST, A. Gurevich et al., 2013
- Barrnap, T. Seemann
- Kraken2, Wood et al., 2019
- RDP Classifier, Q. Wang et al., 2007
- mlst, T. Seemann
- ABRicate, T. Seemann
- ResFinder database, E. Zankari et al., 2012
- CARD database, A.G. McArthur et al., 2013
- ARG-ANNOT database, S.K. Gupta et al., 2014
- VFDB database, L. Chen et al., 2005
- Prodigal, Hyatt et al., 2010
- Prokka, T. Seemann, 2014
- Roary, A.J. Page et al., 2015
- R, R Development Core Team,
2008
- ggplot2, H. Wickham, 2009
- ggtree, G. Yu et al., 2016
- knitr, Y. Xie, 2015
- plotly, C. Sievert et al., 2017
- RColorBrewer, E. Neuwirth and R.C. Brewer, 2014
- reshape2, H. Wickham, 2007
- rmarkdown, J.J. Allaire, 2015
- treeio, L-G. Wang et al., 2019