16S Metagenomics Report

Sample: 20042XD-03-08

16S Metagenomics, Version: 1.1.0

Report Date: 02/14/2022 12:17:47

Sample Configuration

Sample ID:	20042XD-03-08
Sample Name:	20042XD-03-08
Run Folder:	/data/scratch/workspace/RunFolder
Taxonomy File:	gg_13_5_species_32bp.dat

Sample Information

Total Reads	Reads Passing Quality Filtering	% Reads Passing Quality Filtering
109,258	109,258	100.00 %

Classification Statistics

Taxonomic Level	Reads Classified to Taxonomic Level	% Total Reads Classified to Taxonomic Level
Kingdom	108,964	99.73 %
Phylum	106,534	97.51 %
Class	106,059	97.07 %
Order	103,885	95.08 %
Family	103,090	94.35 %
Genus	97,095	88.87 %
Species	64,967	59.46 %

Sunburst Classification Chart

This sunburst chart shows the relative abundance of the classification results within each taxonomic level.
Click on any category to zoom in. Click the center button to zoom out.
Click "Reset Plot" to return to a Kingdom-level view.

Top 20 Classification Results by Taxonomic Level

This bar chart shows the relative abundance of the top 20 classification results within each taxonomic level.
Mouse over any category to see its description and abundance.

Classification Results by Taxonomic Level

Tables show the highest 8 taxonomic classifications at each level.
Pie charts show all classifications above 3.5% abundance.

Top Kingdom Classification Results

Classification	Number of Reads	% Total Reads
Bacteria	108,962	99.73 %
Unclassified at Kingdom level	294	0.27 %
Archaea	2	0.00 %

Note: The "Other" category in this pie chart is the sum of all classifications with less than 3.50 % abundance.

Top Phylum Classification Results

Classification	Number of Reads	% Total Reads
Proteobacteria	71,602	65.53 %
Bacteroidetes	16,987	15.55 %
Verrucomicrobia	5,849	5.35 %
Acidobacteria	4,227	3.87 %
Nitrospirae	2,852	2.61 %
Unclassified at Phylum level	2,724	2.49 %
Actinobacteria	1,529	1.40 %
Gemmatimonadetes	1,253	1.15 %

Total Phylum-level Taxonomic Categories Identified: 30. This table shows the top 8 of 30 classifications.
Note: The "Other" category in this pie chart is the sum of all classifications with less than 3.50 % abundance.

Top Class Classification Results

Classification	Number of Reads	% Total Reads
Alphaproteobacteria	30,562	27.97 %
Betaproteobacteria	28,394	25.99 %
Gammaproteobacteria	10,185	9.32 %
Sphingobacteriia	7,951	7.28 %
Verrucomicrobiae	5,551	5.08 %
Cytophagia	3,908	3.58 %
Flavobacteriia	3,359	3.07 %
Unclassified at Class level	3,199	2.93 %

Total Class-level Taxonomic Categories Identified: 57. This table shows the top 8 of 57 classifications.
Note: The "Other" category in this pie chart is the sum of all classifications with less than 3.50 % abundance.

Top Order Classification Results

Classification	Number of Reads	% Total Reads
Rhodocyclales	24,582	22.50 %
Rhodobacterales	21,222	19.42 %
Sphingobacteriales	7,951	7.28 %
Xanthomonadales	6,652	6.09 %
Verrucomicrobiales	5,551	5.08 %
Unclassified at Order level	5,373	4.92 %
Unclassified at Order level	5,059	4.63 %
Cytophagales	3,908	3.58 %

Total Order-level Taxonomic Categories Identified: 84. This table shows the top 8 of 84 classifications.
Note: The "Other" category in this pie chart is the sum of all classifications with less than 3.50 % abundance.

Top Family Classification Results

Classification	Number of Reads	% Total Reads
Rhodocyclaceae	24,582	22.50 %
Rhodobacteraceae	21,222	19.42 %
Unclassified at Family level	8,741	8.00 %
Unclassified at Family level	6,168	5.65 %
Verrucomicrobiaceae	5,525	5.06 %
Xanthomonadaceae	5,073	4.64 %
Saprospiraceae	4,056	3.71 %
Caulobacteraceae	2,910	2.66 %

Total Family-level Taxonomic Categories Identified: 190. This table shows the top 8 of 190 classifications.
Note: The "Other" category in this pie chart is the sum of all classifications with less than 3.50 % abundance.

Top Genus Classification Results

Classification	Number of Reads	% Total Reads
Paracoccus	18,956	17.35 %
Unclassified at Genus level	12,163	11.13 %
Azoarcus	10,434	9.55 %
Thauera	10,252	9.38 %
Phaeodactylibacter	3,280	3.00 %
Zoogloea	3,192	2.92 %
Brevundimonas	2,876	2.63 %
Nitrospira	2,852	2.61 %

Total Genus-level Taxonomic Categories Identified: 614. This table shows the top 8 of 614 classifications.
Note: The "Other" category in this pie chart is the sum of all classifications with less than 3.50 % abundance.

Top Species Classification Results

Classification	Number of Reads	% Total Reads
Unclassified at Species level	44,291	40.54 %
Paracoccus Paracoccus_alkenifer(Y13827)	9,868	9.03 %
Paracoccus Paracoccus_pacificus(KF924610)	3,409	3.12 %
Paracoccus Paracoccus_sp.(KJ653224)	2,693	2.46 %
Ohtaekwangia Ohtaekwangia_koreensis(GU117702)	2,647	2.42 %
Phaeodactylibacter Phaeodactylibacter_luteus(NR_136808.1)	2,631	2.41 %
Brevundimonas Brevundimonas_aveniformis(DQ372984)	2,442	2.24 %
Defluviicoccus Defluviicoccus_vanus(AF179678)	2,322	2.13 %

Total Species-level Taxonomic Categories Identified: 897. This table shows the top 8 of 897 classifications.
Note: Category names appearing in parentheses are due to incomplete entries in the taxonomic database. They occur when a lower level category is specified, but the name for this higher level category is empty.
Note: The "Other" category in this pie chart is the sum of all classifications with less than 3.50 % abundance.