Package evaluation to test CellMetabolismBase on Julia 1.12.7-DEV.43 (fe4faaea78*) started at 2026-06-22T01:36:24.693 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 8.28s ################################################################################ # Installation # Installing CellMetabolismBase... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [29f58b35] + CellMetabolismBase v0.3.1 Updating `~/.julia/environments/v1.12/Manifest.toml` [47edcb42] + ADTypes v1.22.0 [7d9f7c33] + Accessors v0.1.44 [79e6a3ab] + Adapt v4.6.1 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.25.0 [29f58b35] + CellMetabolismBase v0.3.1 [d360d2e6] + ChainRulesCore v1.26.1 [38540f10] + CommonSolve v0.2.7 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.5 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.16.0 [31c24e10] + Distributions v0.25.127 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.7 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [1a297f60] + FillArrays v1.16.0 [f6369f11] + ForwardDiff v1.4.1 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v1.9.1 [46192b85] + GPUArraysCore v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.8.0 [ae98c720] + Jieko v0.2.1 [2ee39098] + LabelledArrays v1.19.0 [2ab3a3ac] + LogExpFunctions v1.0.1 [e6f89c97] + LoggingExtras v1.2.0 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [2e0e35c7] + Moshi v0.3.8 [77ba4419] + NaNMath v1.1.4 ⌅ [bac558e1] + OrderedCollections v1.8.2 [90014a1f] + PDMats v0.11.37 [d236fae5] + PreallocationTools v1.2.0 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.3 [3cdcf5f2] + RecipesBase v1.3.4 ⌅ [731186ca] + RecursiveArrayTools v3.54.0 [189a3867] + Reexport v1.2.2 [79098fc4] + Rmath v0.9.0 [7e49a35a] + RuntimeGeneratedFunctions v0.5.19 ⌅ [0bca4576] + SciMLBase v2.155.1 ⌅ [a6db7da4] + SciMLLogging v1.10.1 [c0aeaf25] + SciMLOperators v1.22.0 [431bcebd] + SciMLPublic v1.0.1 [53ae85a6] + SciMLStructures v1.10.0 [a2af1166] + SortingAlgorithms v1.2.3 [276daf66] + SpecialFunctions v2.8.0 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.12 [4c63d2b9] + StatsFuns v2.2.0 [2efcf032] + SymbolicIndexingInterface v0.3.48 [781d530d] + TruncatedStacktraces v1.4.0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 6.64s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 5118.1 ms ✓ FunctionWrappers 922.4 ms ✓ MuladdMacro 1488.0 ms ✓ Calculus 1018.9 ms ✓ Compiler 1011.1 ms ✓ ConcreteStructs 895.5 ms ✓ ExprTools 745.1 ms ✓ IteratorInterfaceExtensions 903.0 ms ✓ StatsAPI 1747.7 ms ✓ ADTypes 7000.4 ms ✓ ExproniconLite 2099.3 ms ✓ FillArrays 1090.3 ms ✓ InverseFunctions 40000.7 ms ✓ JuliaSyntax 900.2 ms ✓ CommonSolve 7584.3 ms ✓ MacroTools 952.0 ms ✓ ManualMemory 4739.9 ms ✓ OrderedCollections 930.1 ms ✓ EnumX 905.7 ms ✓ Reexport 844.7 ms ✓ SIMDTypes 1176.7 ms ✓ DocStringExtensions 5820.9 ms ✓ IrrationalConstants 913.0 ms ✓ CompositionsBase 933.2 ms ✓ TestItems 848.8 ms ✓ PtrArrays 902.4 ms ✓ FastPower 4200.5 ms ✓ NaNMath 1536.0 ms ✓ EnzymeCore 775.6 ms ✓ IfElse 3964.1 ms ✓ ConstructionBase 987.2 ms ✓ Adapt 837.8 ms ✓ CommonWorldInvalidations 926.3 ms ✓ DataAPI 1512.6 ms ✓ Statistics → SparseArraysExt 858.9 ms ✓ FastClosures 975.2 ms ✓ SciMLPublic 1148.1 ms ✓ StaticArraysCore 1850.5 ms ✓ AMD 2042.9 ms ✓ PDMats 16288.4 ms ✓ Krylov 1929.2 ms ✓ CpuId 1430.3 ms ✓ SciMLLogging 2460.4 ms ✓ CodeTracking 5606.1 ms ✓ ChainRulesCore 1479.8 ms ✓ Rmath_jll 1437.4 ms ✓ OpenSpecFun_jll 3172.2 ms ✓ RecipesBase 20768.1 ms ✓ SparseColumnPivotedQR 7197.6 ms ✓ Aqua 4637.4 ms ✓ IntelOpenMP_jll 4584.5 ms ✓ oneTBB_jll 67079.4 ms ✓ PureKLU 1300.4 ms ✓ Measurements 3769.3 ms ✓ RuntimeGeneratedFunctions 6117.6 ms ✓ TimerOutputs 4582.3 ms ✓ DifferentiationInterface 3536.6 ms ✓ Jieko 930.3 ms ✓ FillArrays → FillArraysStatisticsExt 1549.7 ms ✓ FillArrays → FillArraysSparseArraysExt 1755.4 ms ✓ InverseFunctions → InverseFunctionsTestExt 879.8 ms ✓ InverseFunctions → InverseFunctionsDatesExt 1780.3 ms ✓ CommonSubexpressions 1679.3 ms ✓ TruncatedStacktraces 5171.6 ms ✓ ThreadingUtilities 3505.6 ms ✓ DataStructures 14206.7 ms ✓ SparseMatrixColorings 1317.4 ms ✓ LogExpFunctions 837.8 ms ✓ CompositionsBase → CompositionsBaseInverseFunctionsExt 31258.4 ms ✓ TestItemRunner 1010.4 ms ✓ AliasTables 912.2 ms ✓ ADTypes → ADTypesEnzymeCoreExt 835.1 ms ✓ CommonSolve → CommonSolveEnzymeCoreExt 811.2 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 829.3 ms ✓ ADTypes → ADTypesConstructionBaseExt 1317.2 ms ✓ Adapt → AdaptSparseArraysExt 4205.0 ms ✓ ArrayInterface 1323.1 ms ✓ GPUArraysCore 795.5 ms ✓ EnzymeCore → AdaptExt 4253.4 ms ✓ Missings 5291.3 ms ✓ Static 874.2 ms ✓ DiffResults 926.6 ms ✓ StructUtils → StructUtilsStaticArraysCoreExt 20367.2 ms ✓ StaticArrays 1627.1 ms ✓ FillArrays → FillArraysPDMatsExt 15119.0 ms ✓ JuliaInterpreter 4997.2 ms ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 848.6 ms ✓ ADTypes → ADTypesChainRulesCoreExt 1406.9 ms ✓ EnzymeCore → EnzymeCoreChainRulesCoreExt 1596.2 ms ✓ Rmath 1527.2 ms ✓ SparseColumnPivotedQR → SparseColumnPivotedQRAMDExt 4837.1 ms ✓ MKL_jll 1263.3 ms ✓ Measurements → MeasurementsRecipesBaseExt 892.4 ms ✓ StructUtils → StructUtilsMeasurementsExt 933.4 ms ✓ FastPower → FastPowerMeasurementsExt 1015.5 ms ✓ DifferentiationInterface → DifferentiationInterfaceChainRulesCoreExt 1405.6 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 23631.9 ms ✓ Moshi 5697.2 ms ✓ FunctionWrappersWrappers 1030.8 ms ✓ SortingAlgorithms 4848.1 ms ✓ QuadGK 2031.1 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseMatrixColoringsExt 851.0 ms ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 3432.4 ms ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 5904.4 ms ✓ SpecialFunctions 3340.0 ms ✓ Setfield 8836.8 ms ✓ Accessors 1975.0 ms ✓ MaybeInplace 1337.6 ms ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 1178.3 ms ✓ FastBroadcast 860.3 ms ✓ ArrayInterface → ArrayInterfaceChainRulesCoreExt 764.1 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 4149.8 ms ✓ SciMLStructures 2512.2 ms ✓ PreallocationTools 1014.2 ms ✓ DifferentiationInterface → DifferentiationInterfaceGPUArraysCoreExt 891.7 ms ✓ ArrayInterface → ArrayInterfaceGPUArraysCoreExt 954.6 ms ✓ BitTwiddlingConvenienceFunctions 2601.0 ms ✓ CPUSummary 7472.3 ms ✓ StaticArrayInterface 4224.3 ms ✓ StaticArrays → StaticArraysChainRulesCoreExt 1445.2 ms ✓ StaticArrays → StaticArraysStatisticsExt 1710.7 ms ✓ FillArrays → FillArraysStaticArraysExt 1665.0 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1635.4 ms ✓ Adapt → AdaptStaticArraysExt 1440.2 ms ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 22306.6 ms ✓ LoweredCodeUtils 7124.8 ms ✓ StatsBase 4213.9 ms ✓ FastGaussQuadrature 4985.8 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 2309.7 ms ✓ HypergeometricFunctions 1122.4 ms ✓ Measurements → MeasurementsSpecialFunctionsExt 1494.4 ms ✓ DiffRules 2747.5 ms ✓ Accessors → LinearAlgebraExt 2265.0 ms ✓ Accessors → TestExt 1841.0 ms ✓ Accessors → StaticArraysExt 1502.9 ms ✓ MaybeInplace → MaybeInplaceSparseArraysExt 992.7 ms ✓ FastBroadcast → FastBroadcastStaticExt 1339.9 ms ✓ FiniteDiff 1853.5 ms ✓ PolyesterWeave 1718.3 ms ✓ StaticArrayInterface → StaticArrayInterfaceStaticArraysExt 1274.3 ms ✓ CloseOpenIntervals 1483.7 ms ✓ LayoutPointers 129991.2 ms ✓ JET 1507.0 ms ✓ PDMats → StatsBaseExt 5760.5 ms ✓ StatsFuns 18807.1 ms ✓ ForwardDiff 7703.6 ms ✓ SciMLOperators 6917.3 ms ✓ SymbolicIndexingInterface 1489.9 ms ✓ FiniteDiff → FiniteDiffSparseArraysExt 1327.3 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 958.3 ms ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt 2218.7 ms ✓ StrideArraysCore 1143.4 ms ✓ StatsFuns → StatsFunsInverseFunctionsExt 3880.9 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 10002.8 ms ✓ Distributions 20843.8 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 1306.6 ms ✓ FastPower → FastPowerForwardDiffExt 5075.8 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 13319.4 ms ✓ PreallocationTools → PreallocationToolsForwardDiffExt 1325.4 ms ✓ SciMLOperators → SciMLOperatorsStaticArraysCoreExt 1997.6 ms ✓ SciMLOperators → SciMLOperatorsSparseArraysExt 12935.6 ms ✓ RecursiveArrayTools 2320.0 ms ✓ Polyester 3607.9 ms ✓ Distributions → DistributionsTestExt 6476.2 ms ✓ Distributions → DistributionsChainRulesCoreExt 1439.5 ms ✓ RecursiveArrayTools → RecursiveArrayToolsStatisticsExt 1412.3 ms ✓ RecursiveArrayTools → RecursiveArrayToolsFastBroadcastExt 2255.4 ms ✓ RecursiveArrayTools → RecursiveArrayToolsSparseArraysExt 1655.7 ms ✓ RecursiveArrayTools → RecursiveArrayToolsMeasurementsExt 1832.2 ms ✓ RecursiveArrayTools → RecursiveArrayToolsForwardDiffExt 1841.9 ms ✓ FastBroadcast → FastBroadcastPolyesterExt 41983.9 ms ✓ SciMLBase 42949.4 ms ✓ LabelledArrays 36327.9 ms ✓ RecursiveArrayTools → RecursiveArrayToolsFastBroadcastPolyesterExt 46245.3 ms ✓ SciMLBase → SciMLBaseDistributionsExt 4249.4 ms ✓ SciMLBase → SciMLBaseChainRulesCoreExt 3543.7 ms ✓ SciMLBase → SciMLBaseMeasurementsExt 3671.1 ms ✓ SciMLBase → SciMLBaseDifferentiationInterfaceExt 6887.0 ms ✓ SciMLBase → SciMLBaseForwardDiffExt 24624.1 ms ✓ LinearSolve 12990.7 ms ✓ SciMLJacobianOperators 122377.7 ms ✓ CellMetabolismBase 34924.4 ms ✓ LinearSolve → LinearSolveForwardDiffExt 5091.5 ms ✓ LinearSolve → LinearSolveChainRulesCoreExt 111830.9 ms ✓ LinearSolve → LinearSolveSparseArraysExt 36570.4 ms ✓ LineSearch 120909.5 ms ✓ NonlinearSolveBase 133254.4 ms ✓ CellMetabolism 53777.8 ms ✓ LinearSolve → LinearSolveEnzymeExt 65160.0 ms ✓ NonlinearSolveBase → NonlinearSolveBaseSparseMatrixColoringsExt 15034.4 ms ✓ NonlinearSolveBase → NonlinearSolveBaseForwardDiffExt 4573.1 ms ✓ NonlinearSolveBase → NonlinearSolveBaseSparseArraysExt 22391.9 ms ✓ NonlinearSolveBase → NonlinearSolveBaseLineSearchExt 7259.5 ms ✓ NonlinearSolveBase → NonlinearSolveBaseLinearSolveExt 4633.2 ms ✓ NonlinearSolveBase → NonlinearSolveBaseChainRulesCoreExt 11008.7 ms ✓ BracketingNonlinearSolve 21900.6 ms ✓ NonlinearSolveSpectralMethods 41822.8 ms ✓ NonlinearSolveQuasiNewton 83022.4 ms ✓ NonlinearSolveFirstOrder 4592.7 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveForwardDiffExt 13778.3 ms ✓ DiffEqBase 4731.7 ms ✓ NonlinearSolveSpectralMethods → NonlinearSolveSpectralMethodsForwardDiffExt 6629.4 ms ✓ NonlinearSolveQuasiNewton → NonlinearSolveQuasiNewtonForwardDiffExt 4500.6 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveChainRulesCoreExt 23722.9 ms ✓ SimpleNonlinearSolve 3689.2 ms ✓ DiffEqBase → DiffEqBaseChainRulesCoreExt 3828.3 ms ✓ DiffEqBase → DiffEqBaseMeasurementsExt 10519.1 ms ✓ DiffEqBase → DiffEqBaseForwardDiffExt 4473.7 ms ✓ DiffEqBase → DiffEqBaseSparseArraysExt 32493.3 ms ✓ OrdinaryDiffEqCore 4833.7 ms ✓ SimpleNonlinearSolve → SimpleNonlinearSolveChainRulesCoreExt 103885.6 ms ✓ NonlinearSolve 5250.8 ms ✓ OrdinaryDiffEqCore → OrdinaryDiffEqCoreSparseArraysExt 16463.5 ms ✓ OrdinaryDiffEqDifferentiation 7044.5 ms ✓ OrdinaryDiffEqDifferentiation → OrdinaryDiffEqDifferentiationSparseArraysExt 19904.2 ms ✓ OrdinaryDiffEqNonlinearSolve 66220.3 ms ✓ OrdinaryDiffEqFIRK 216 dependencies successfully precompiled in 2302 seconds. 50 already precompiled. 24 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, Dates, Downloads, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, Printf, StyledStrings, TOML, Tar, UUIDs, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 155 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompilation completed after 2316.48s ################################################################################ # Testing # Testing CellMetabolismBase Status `/tmp/jl_2asFtg/Project.toml` [4c88cf16] Aqua v0.8.16 [6e4b80f9] BenchmarkTools v1.8.0 [d7c5e2dd] CellMetabolism v0.2.2 [29f58b35] CellMetabolismBase v0.3.1 [31c24e10] Distributions v0.25.127 ⌅ [c3a54625] JET v0.10.15 [2ee39098] LabelledArrays v1.19.0 ⌅ [5960d6e9] OrdinaryDiffEqFIRK v1.26.0 ⌅ [0bca4576] SciMLBase v2.155.1 [f8b46487] TestItemRunner v1.1.5 [8dfed614] Test v1.11.0 Status `/tmp/jl_2asFtg/Manifest.toml` [47edcb42] ADTypes v1.22.0 [14f7f29c] AMD v0.5.3 [7d9f7c33] Accessors v0.1.44 [79e6a3ab] Adapt v4.6.1 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.16 [4fba245c] ArrayInterface v7.25.0 [6e4b80f9] BenchmarkTools v1.8.0 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [70df07ce] BracketingNonlinearSolve v1.12.1 [2a0fbf3d] CPUSummary v0.2.7 [49dc2e85] Calculus v0.5.2 [d7c5e2dd] CellMetabolism v0.2.2 [29f58b35] CellMetabolismBase v0.3.1 [d360d2e6] ChainRulesCore v1.26.1 [fb6a15b2] CloseOpenIntervals v0.1.13 [da1fd8a2] CodeTracking v3.0.2 [38540f10] CommonSolve v0.2.7 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [807dbc54] Compiler v0.1.1 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.4 [187b0558] ConstructionBase v1.6.0 [adafc99b] CpuId v0.3.1 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.5 ⌅ [2b5f629d] DiffEqBase v6.218.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.16.0 [a0c0ee7d] DifferentiationInterface v0.7.18 [31c24e10] Distributions v0.25.127 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.7 [f151be2c] EnzymeCore v0.8.20 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [7034ab61] FastBroadcast v1.3.2 [9aa1b823] FastClosures v0.3.2 [442a2c76] FastGaussQuadrature v1.3.0 [a4df4552] FastPower v1.3.1 [1a297f60] FillArrays v1.16.0 [6a86dc24] FiniteDiff v2.31.0 [f6369f11] ForwardDiff v1.4.1 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v1.9.1 [46192b85] GPUArraysCore v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [615f187c] IfElse v0.1.1 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 ⌅ [c3a54625] JET v0.10.15 [692b3bcd] JLLWrappers v1.8.0 [682c06a0] JSON v1.6.1 [ae98c720] Jieko v0.2.1 ⌅ [aa1ae85d] JuliaInterpreter v0.10.12 [70703baa] JuliaSyntax v1.0.2 [ba0b0d4f] Krylov v0.10.6 [2ee39098] LabelledArrays v1.19.0 [10f19ff3] LayoutPointers v0.1.17 [87fe0de2] LineSearch v0.1.9 [7ed4a6bd] LinearSolve v3.86.1 [2ab3a3ac] LogExpFunctions v1.0.1 [e6f89c97] LoggingExtras v1.2.0 ⌅ [6f1432cf] LoweredCodeUtils v3.5.3 [1914dd2f] MacroTools v0.5.16 [d125e4d3] ManualMemory v0.1.8 [bb5d69b7] MaybeInplace v0.1.4 [eff96d63] Measurements v2.14.1 [e1d29d7a] Missings v1.2.0 [2e0e35c7] Moshi v0.3.8 [46d2c3a1] MuladdMacro v0.2.4 [77ba4419] NaNMath v1.1.4 [8913a72c] NonlinearSolve v4.19.1 ⌃ [be0214bd] NonlinearSolveBase v2.30.3 [5959db7a] NonlinearSolveFirstOrder v2.1.1 [9a2c21bd] NonlinearSolveQuasiNewton v1.13.1 [26075421] NonlinearSolveSpectralMethods v1.7.1 ⌅ [bac558e1] OrderedCollections v1.8.2 ⌅ [bbf590c4] OrdinaryDiffEqCore v3.33.1 ⌅ [4302a76b] OrdinaryDiffEqDifferentiation v2.9.0 ⌅ [5960d6e9] OrdinaryDiffEqFIRK v1.26.0 ⌅ [127b3ac7] OrdinaryDiffEqNonlinearSolve v1.28.0 [90014a1f] PDMats v0.11.37 [69de0a69] Parsers v2.8.6 [f517fe37] Polyester v0.7.19 [1d0040c9] PolyesterWeave v0.2.2 [d236fae5] PreallocationTools v1.2.0 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [43287f4e] PtrArrays v1.4.0 [0c0d3e7f] PureKLU v1.0.1 [1fd47b50] QuadGK v2.11.3 [3cdcf5f2] RecipesBase v1.3.4 ⌅ [731186ca] RecursiveArrayTools v3.54.0 [189a3867] Reexport v1.2.2 [79098fc4] Rmath v0.9.0 [7e49a35a] RuntimeGeneratedFunctions v0.5.19 [94e857df] SIMDTypes v0.1.0 ⌅ [0bca4576] SciMLBase v2.155.1 [19f34311] SciMLJacobianOperators v0.1.13 ⌅ [a6db7da4] SciMLLogging v1.10.1 [c0aeaf25] SciMLOperators v1.22.0 [431bcebd] SciMLPublic v1.0.1 [53ae85a6] SciMLStructures v1.10.0 [efcf1570] Setfield v1.1.2 [727e6d20] SimpleNonlinearSolve v2.12.0 [a2af1166] SortingAlgorithms v1.2.3 [a57abbd0] SparseColumnPivotedQR v2.1.1 [0a514795] SparseMatrixColorings v0.4.27 [276daf66] SpecialFunctions v2.8.0 [aedffcd0] Static v1.4.0 [0d7ed370] StaticArrayInterface v1.10.0 [90137ffa] StaticArrays v1.9.18 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.12 [4c63d2b9] StatsFuns v2.2.0 [7792a7ef] StrideArraysCore v0.5.9 [ec057cc2] StructUtils v2.8.2 [2efcf032] SymbolicIndexingInterface v0.3.48 [f8b46487] TestItemRunner v1.1.5 [1c621080] TestItems v1.0.0 [8290d209] ThreadingUtilities v0.5.6 [a759f4b9] TimerOutputs v0.5.29 [781d530d] TruncatedStacktraces v1.4.0 [1d5cc7b8] IntelOpenMP_jll v2025.2.0+0 [856f044c] MKL_jll v2025.2.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [1317d2d5] oneTBB_jll v2022.3.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.1 [de0858da] Printf v1.11.0 [9abbd945] Profile v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+0 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.6+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling packages... 3022.2 ms ✓ Distributions → DistributionsTestExt 1 dependency successfully precompiled in 3 seconds. 48 already precompiled. 47 dependencies precompiled but different versions are currently loaded (AliasTables, Base64, CompilerSupportLibraries_jll, DataAPI, DataStructures, Dates, Distributions, DocStringExtensions, FillArrays, FillArrays → FillArraysPDMatsExt, FillArrays → FillArraysSparseArraysExt, FillArrays → FillArraysStatisticsExt, HypergeometricFunctions, InteractiveUtils, IrrationalConstants, JLLWrappers, JuliaSyntaxHighlighting, LogExpFunctions, Logging, Markdown, Missings, OpenLibm_jll, OpenSpecFun_jll, OrderedCollections, PDMats, PDMats → StatsBaseExt, Preferences, Printf, PtrArrays, QuadGK, Reexport, Rmath, Rmath_jll, Serialization, SortingAlgorithms, SparseArrays, SpecialFunctions, Statistics, Statistics → SparseArraysExt, StatsAPI, StatsBase, StatsFuns, StyledStrings, SuiteSparse, SuiteSparse_jll, TOML and Test). Restart julia to access the new versions. Otherwise, 1 dependent of these packages may trigger further precompilation to work with the unexpected versions. Code linting (JET.jl): JET-test failed at /home/pkgeval/.julia/packages/JET/XRz79/src/JETBase.jl:1109 Expression: (JET.report_package)(CellMetabolismBase; toplevel_logger = nothing, target_defined_modules = true) WARNING: Detected access to binding `CellMetabolismBase.#7#8` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `CellMetabolismBase.#9#10` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. ═════ 8 possible errors found ═════ ┌ var"#7#8"(ConstMetabs::Any, Enzs::Any, ::Any, ::Any) @ CellMetabolismBase /home/pkgeval/.julia/packages/CellMetabolismBase/5qLnL/src/MetabolicPathway_and_Enzyme_types_and_related_functions.jl:316 │ non-boolean `Missing` found in boolean context (1/2 union split): goto %44 if not CellMetabolismBase.:!(CellMetabolismBase.in(metab_name::Any, unique_reactant_names::Union{Tuple{}, Tuple{Any}})::Union{Missing, Bool})::Union{Missing, Bool} └──────────────────── ┌ var"#7#8"(ConstMetabs::Any, Enzs::Any, ::Any, ::Any) @ CellMetabolismBase /home/pkgeval/.julia/packages/CellMetabolismBase/5qLnL/src/MetabolicPathway_and_Enzyme_types_and_related_functions.jl:316 │ non-boolean `Missing` found in boolean context (1/2 union split): goto %44 if not CellMetabolismBase.:!(CellMetabolismBase.in(metab_name::Any, unique_reactant_names::Union{Tuple{}, Tuple{Any}, Tuple{Any, Any}})::Union{Missing, Bool})::Union{Missing, Bool} └──────────────────── ┌ var"#7#8"(ConstMetabs::Any, Enzs::Any, ::Any, ::Any) @ CellMetabolismBase /home/pkgeval/.julia/packages/CellMetabolismBase/5qLnL/src/MetabolicPathway_and_Enzyme_types_and_related_functions.jl:316 │ non-boolean `Missing` found in boolean context (1/2 union split): goto %44 if not CellMetabolismBase.:!(CellMetabolismBase.in(metab_name::Any, unique_reactant_names::Tuple)::Union{Missing, Bool})::Union{Missing, Bool} └──────────────────── ┌ var"#7#8"(ConstMetabs::Any, Enzs::Any, ::Any, ::Any) @ CellMetabolismBase /home/pkgeval/.julia/packages/CellMetabolismBase/5qLnL/src/MetabolicPathway_and_Enzyme_types_and_related_functions.jl:321 │ non-boolean `Missing` found in boolean context (1/2 union split): goto %70 if not CellMetabolismBase.:!(CellMetabolismBase.in(metab_name, unique_reactant_names::Tuple)::Union{Missing, Bool})::Union{Missing, Bool} └──────────────────── ┌ var"#7#8"(ConstMetabs::Any, Enzs::Any, ::Any, ::Any) @ CellMetabolismBase /home/pkgeval/.julia/packages/CellMetabolismBase/5qLnL/src/MetabolicPathway_and_Enzyme_types_and_related_functions.jl:321 │ non-boolean `Missing` found in boolean context (1/2 union split): goto %70 if not CellMetabolismBase.:!(CellMetabolismBase.in(metab_name::Any, unique_reactant_names::Tuple)::Union{Missing, Bool})::Union{Missing, Bool} └──────────────────── ┌ var"#9#10"(ConstMetabs::Any, Enzs::Any, ::Any, ::Any) @ CellMetabolismBase /home/pkgeval/.julia/packages/CellMetabolismBase/5qLnL/src/MetabolicPathway_and_Enzyme_types_and_related_functions.jl:347 │ non-boolean `Missing` found in boolean context (1/2 union split): goto %53 if not CellMetabolismBase.:!(CellMetabolismBase.in(metab_name::Any, unique_metab_names::Union{Tuple{}, Tuple{Any}})::Union{Missing, Bool})::Union{Missing, Bool} └──────────────────── ┌ var"#9#10"(ConstMetabs::Any, Enzs::Any, ::Any, ::Any) @ CellMetabolismBase /home/pkgeval/.julia/packages/CellMetabolismBase/5qLnL/src/MetabolicPathway_and_Enzyme_types_and_related_functions.jl:347 │ non-boolean `Missing` found in boolean context (1/2 union split): goto %53 if not CellMetabolismBase.:!(CellMetabolismBase.in(metab_name::Any, unique_metab_names::Union{Tuple{}, Tuple{Any}, Tuple{Any, Any}})::Union{Missing, Bool})::Union{Missing, Bool} └──────────────────── ┌ var"#9#10"(ConstMetabs::Any, Enzs::Any, ::Any, ::Any) @ CellMetabolismBase /home/pkgeval/.julia/packages/CellMetabolismBase/5qLnL/src/MetabolicPathway_and_Enzyme_types_and_related_functions.jl:347 │ non-boolean `Missing` found in boolean context (1/2 union split): goto %53 if not CellMetabolismBase.:!(CellMetabolismBase.in(metab_name::Any, unique_metab_names::Tuple)::Union{Missing, Bool})::Union{Missing, Bool} └──────────────────── Precompiling packages... 9826.4 ms ✓ Parsers 6824.7 ms ✓ JSON 8250.7 ms ✓ BenchmarkTools 3 dependencies successfully precompiled in 25 seconds. 14 already precompiled. 12 dependencies precompiled but different versions are currently loaded (Compat, Compat → CompatLinearAlgebraExt, Dates, Logging, PrecompileTools, Preferences, Printf, Statistics, StyledStrings, TOML, UUIDs and Unicode). Restart julia to access the new versions. Otherwise, 5 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 647.1 ms ✓ StructUtils → StructUtilsStaticArraysCoreExt 1 dependency successfully precompiled in 1 seconds. 6 already precompiled. 6 dependencies precompiled but different versions are currently loaded (Dates, Printf, StaticArraysCore, StructUtils, UUIDs and Unicode). Restart julia to access the new versions. Otherwise, 1 dependent of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 3066.4 ms ✓ IntelOpenMP_jll 3086.3 ms ✓ oneTBB_jll 3388.2 ms ✓ MKL_jll 3083.6 ms ✓ LinearSolve → LinearSolveChainRulesCoreExt 4 dependencies successfully precompiled in 13 seconds. 101 already precompiled. 99 dependencies precompiled but different versions are currently loaded (ADTypes, ADTypes → ADTypesChainRulesCoreExt, ADTypes → ADTypesConstructionBaseExt, AMD, Accessors, Accessors → LinearAlgebraExt, Adapt, Adapt → AdaptSparseArraysExt, ArgTools, ArrayInterface, ArrayInterface → ArrayInterfaceChainRulesCoreExt, ArrayInterface → ArrayInterfaceGPUArraysCoreExt, ArrayInterface → ArrayInterfaceSparseArraysExt, ArrayInterface → ArrayInterfaceStaticArraysCoreExt, Base64, ChainRulesCore, ChainRulesCore → ChainRulesCoreSparseArraysExt, CommonSolve, Compat, Compat → CompatLinearAlgebraExt, CompilerSupportLibraries_jll, CompositionsBase, CompositionsBase → CompositionsBaseInverseFunctionsExt, ConcreteStructs, ConstructionBase, ConstructionBase → ConstructionBaseLinearAlgebraExt, Dates, Distributed, DocStringExtensions, Downloads, EnumX, ExprTools, ExproniconLite, FunctionWrappers, FunctionWrappersWrappers, GPUArraysCore, InteractiveUtils, InverseFunctions, InverseFunctions → InverseFunctionsDatesExt, IteratorInterfaceExtensions, JLLWrappers, Jieko, JuliaSyntaxHighlighting, Krylov, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, LinearSolve, LinearSolve → LinearSolveSparseArraysExt, Logging, LoggingExtras, MacroTools, Markdown, Moshi, MozillaCACerts_jll, MuladdMacro, NetworkOptions, OpenSSL_jll, Pkg, PreallocationTools, PrecompileTools, Preferences, Printf, PureKLU, RecipesBase, RecursiveArrayTools, RecursiveArrayTools → RecursiveArrayToolsSparseArraysExt, RecursiveArrayTools → RecursiveArrayToolsStatisticsExt, Reexport, RuntimeGeneratedFunctions, SciMLBase, SciMLBase → SciMLBaseChainRulesCoreExt, SciMLLogging, SciMLOperators, SciMLOperators → SciMLOperatorsSparseArraysExt, SciMLOperators → SciMLOperatorsStaticArraysCoreExt, SciMLPublic, SciMLStructures, Serialization, Setfield, SparseArrays, SparseColumnPivotedQR, SparseColumnPivotedQR → SparseColumnPivotedQRAMDExt, StaticArraysCore, Statistics, Statistics → SparseArraysExt, StyledStrings, SuiteSparse_jll, SymbolicIndexingInterface, TOML, Tar, TruncatedStacktraces, UUIDs, Unicode, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 5 dependents of these packages may trigger further precompilation to work with the unexpected versions. ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1303 running 1 of 1 signal (10): User defined signal 1 gc_mark_obj8 at /source/src/gc-stock.c:1709 gc_mark_outrefs at /source/src/gc-stock.c:2468 [inlined] gc_mark_loop_serial_ at /source/src/gc-stock.c:2524 gc_mark_loop_serial at /source/src/gc-stock.c:2547 gc_mark_loop at /source/src/gc-stock.c:2735 [inlined] _jl_gc_collect at /source/src/gc-stock.c:3079 ijl_gc_collect at /source/src/gc-stock.c:3480 maybe_collect at /source/src/gc-stock.c:351 [inlined] jl_gc_small_alloc_inner at /source/src/gc-stock.c:727 jl_gc_small_alloc_noinline at /source/src/gc-stock.c:785 [inlined] jl_gc_alloc_ at /source/src/gc-stock.c:799 jl_alloc_genericmemory_unchecked at /source/src/genericmemory.c:41 GenericMemory at ./boot.jl:588 [inlined] Array at ./boot.jl:647 [inlined] Array at ./boot.jl:660 [inlined] fill at ./array.jl:542 [inlined] fill at ./array.jl:540 [inlined] adce_pass! at ./../usr/share/julia/Compiler/src/ssair/passes.jl:2102 run_passes_ipo_safe at ./../usr/share/julia/Compiler/src/optimize.jl:1013 run_passes_ipo_safe at ./../usr/share/julia/Compiler/src/optimize.jl:1027 [inlined] optimize at ./../usr/share/julia/Compiler/src/optimize.jl:1002 jfptr_optimize_82852.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 finish_nocycle at ./../usr/share/julia/Compiler/src/typeinfer.jl:202 jfptr_finish_nocycle_84423.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 typeinf at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4588 const_prop_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:1357 abstract_call_method_with_const_args at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:902 abstract_call_method_with_const_args at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:871 [inlined] handle1 at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:178 infercalls at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:252 jfptr_infercalls_79729.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_invoke at /source/src/gf.c:4021 abstract_call_gf_by_type at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:338 abstract_call_known at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2822 abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2931 abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2924 [inlined] abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3084 abstract_eval_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3102 [inlined] abstract_eval_statement_expr at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3431 abstract_eval_basic_statement at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3877 [inlined] abstract_eval_basic_statement at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3834 [inlined] typeinf_local at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4388 jfptr_typeinf_local_84942.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 typeinf at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4581 typeinf_ext at ./../usr/share/julia/Compiler/src/typeinfer.jl:1256 typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1439 [inlined] typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1448 jfptr_typeinf_ext_toplevel_83090.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] jl_type_infer at /source/src/gf.c:466 jl_compile_method_internal at /source/src/gf.c:3516 _jl_invoke at /source/src/gf.c:4006 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #_ode_init#69 at /home/pkgeval/.julia/packages/OrdinaryDiffEqCore/rnOL4/src/solve.jl:834 _ode_init at /home/pkgeval/.julia/packages/OrdinaryDiffEqCore/rnOL4/src/solve.jl:47 [inlined] #__init#68 at /home/pkgeval/.julia/packages/OrdinaryDiffEqCore/rnOL4/src/solve.jl:37 [inlined] __init at /home/pkgeval/.julia/packages/OrdinaryDiffEqCore/rnOL4/src/solve.jl:19 [inlined] __init at /home/pkgeval/.julia/packages/OrdinaryDiffEqCore/rnOL4/src/solve.jl:19 [inlined] #__solve#67 at /home/pkgeval/.julia/packages/OrdinaryDiffEqCore/rnOL4/src/solve.jl:9 __solve at /home/pkgeval/.julia/packages/OrdinaryDiffEqCore/rnOL4/src/solve.jl:1 [inlined] #solve_call#23 at /home/pkgeval/.julia/packages/DiffEqBase/CJTzr/src/solve.jl:172 [inlined] solve_call at /home/pkgeval/.julia/packages/DiffEqBase/CJTzr/src/solve.jl:137 [inlined] #solve_up#30 at /home/pkgeval/.julia/packages/DiffEqBase/CJTzr/src/solve.jl:646 [inlined] solve_up at /home/pkgeval/.julia/packages/DiffEqBase/CJTzr/src/solve.jl:619 [inlined] #solve#29 at /home/pkgeval/.julia/packages/DiffEqBase/CJTzr/src/solve.jl:603 [inlined] solve at /home/pkgeval/.julia/packages/DiffEqBase/CJTzr/src/solve.jl:591 unknown function (ip: 0x7cc9ae5d1d36) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2873 include_string at ./loading.jl:2883 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] jl_f_invokelatest at /source/src/builtins.c:881 #run_testitem##6 at /home/pkgeval/.julia/packages/TestItemRunner/GnoVt/src/TestItemRunner.jl:119 [inlined] withpath at /home/pkgeval/.julia/packages/TestItemRunner/GnoVt/src/vendored_code.jl:7 #run_testitem##4 at /home/pkgeval/.julia/packages/TestItemRunner/GnoVt/src/TestItemRunner.jl:118 [inlined] cd at ./file.jl:112 unknown function (ip: 0x7cc9d87f6ee6) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 run_testitem at /home/pkgeval/.julia/packages/TestItemRunner/GnoVt/src/TestItemRunner.jl:117 unknown function (ip: 0x7cc9d87f1d1e) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #run_tests#7 at /home/pkgeval/.julia/packages/TestItemRunner/GnoVt/src/TestItemRunner.jl:231 run_tests at /home/pkgeval/.julia/packages/TestItemRunner/GnoVt/src/TestItemRunner.jl:134 unknown function (ip: 0x7cc9d87cabe2) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2873 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2933 include at ./Base.jl:307 IncludeInto at ./Base.jl:308 jfptr_IncludeInto_65897.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 exec_options at ./client.jl:283 _start at ./client.jl:550 jfptr__start_61850.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7cc9e0f66249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 #wait#406 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] wait at ./process.jl:693 wait at ./process.jl:686 jfptr_wait_30048.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 subprocess_handler at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2556 unknown function (ip: 0x7840e5f83b73) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #205 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2496 withenv at ./env.jl:265 #190 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2311 with_temp_env at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2164 #186 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2278 #mktempdir#21 at ./file.jl:936 unknown function (ip: 0x7840e5f6e14c) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 mktempdir at ./file.jl:932 mktempdir at ./file.jl:932 #sandbox#182 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2225 [inlined] sandbox at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2215 unknown function (ip: 0x7840e5f6c839) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #test#193 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2481 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2387 [inlined] #test#174 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:552 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:529 unknown function (ip: 0x7840e5f6c471) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #test#84 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 unknown function (ip: 0x7840e5f64130) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:158 #test#82 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined] #test#81 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined] test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 unknown function (ip: 0x7840e5f60def) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2873 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2933 include at ./Base.jl:306 exec_options at ./client.jl:317 _start at ./client.jl:550 jfptr__start_61850.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7841023f0249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007840e7bfc010 Total snapshots: 536. Utilization: 0% ╎536 @Base/client.jl:550 _start() ╎ 536 @Base/client.jl:317 exec_options(opts::Base.JLOptions) ╎ 536 @Base/Base.jl:306 include(mod::Module, _path::String) ╎ 536 @Base/loading.jl:2933 _include(mapexpr::Function, mod::Module, _pat… ╎ 536 @Base/loading.jl:2873 include_string(mapexpr::typeof(identity), mo… ╎ 536 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ ╎ 536 @Pkg/src/API.jl:156 kwcall(::@NamedTuple{julia_args::Cmd}, ::typ… ╎ ╎ 536 @Pkg/src/API.jl:156 #test#81 ╎ ╎ 536 @Pkg/src/API.jl:157 test ╎ ╎ 536 @Pkg/src/API.jl:157 test(pkgs::Vector{String}; kwargs::Base.P… ╎ ╎ 536 @Pkg/src/API.jl:158 kwcall(::@NamedTuple{julia_args::Cmd}, :… ╎ ╎ ╎ 536 @Pkg/src/API.jl:169 test(pkgs::Vector{PackageSpec}; io::IOC… ╎ ╎ ╎ 536 @Pkg/src/API.jl:529 kwcall(::@NamedTuple{julia_args::Cmd, … ╎ ╎ ╎ 536 @Pkg/src/API.jl:552 test(ctx::Pkg.Types.Context, pkgs::Ve… ╎ ╎ ╎ 536 @Pkg/…erations.jl:2387 test ╎ ╎ ╎ 536 @Pkg/…erations.jl:2481 test(ctx::Pkg.Types.Context, pkg… ╎ ╎ ╎ ╎ 536 @Pkg/…rations.jl:2215 kwcall(::@NamedTuple{preferences… ╎ ╎ ╎ ╎ 536 @Pkg/…rations.jl:2225 #sandbox#182 ╎ ╎ ╎ ╎ 536 @Base/file.jl:932 mktempdir(fn::Function) ╎ ╎ ╎ ╎ 536 @Base/file.jl:932 mktempdir(fn::Function, parent::S… ╎ ╎ ╎ ╎ 536 @Base/file.jl:936 mktempdir(fn::Pkg.Operations.var… ╎ ╎ ╎ ╎ ╎ 536 @Pkg/…tions.jl:2278 (::Pkg.Operations.var"#186#18… ╎ ╎ ╎ ╎ ╎ 536 @Pkg/…tions.jl:2164 with_temp_env(fn::Pkg.Operat… ╎ ╎ ╎ ╎ ╎ 536 @Pkg/…tions.jl:2311 (::Pkg.Operations.var"#190#… ╎ ╎ ╎ ╎ ╎ 536 @Base/env.jl:265 withenv(::Pkg.Operations.var"… ╎ ╎ ╎ ╎ ╎ 536 @Pkg/…ions.jl:2496 (::Pkg.Operations.var"#205… ╎ ╎ ╎ ╎ ╎ ╎ 536 @Pkg/…ons.jl:2556 subprocess_handler(cmd::Cm… ╎ ╎ ╎ ╎ ╎ ╎ 536 @Base/…ss.jl:686 wait(x::Base.Process) ╎ ╎ ╎ ╎ ╎ ╎ 536 @Base/…ss.jl:693 wait(x::Base.Process, syn… ╎ ╎ ╎ ╎ ╎ ╎ 536 @Base/…on.jl:136 wait ╎ ╎ ╎ ╎ ╎ ╎ 536 @Base/…on.jl:141 wait(c::Base.GenericCon… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 536 @Base/…sk.jl:1228 wait() 535╎ ╎ ╎ ╎ ╎ ╎ ╎ 536 @Base/…sk.jl:1216 poptask(W::Base.Intr… [1303] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/CellMetabolismBase/5qLnL/test/tests_make_ODEProblem.jl:115 _ZNK4llvm12DenseMapBaseINS_8DenseMapIjSt10unique_ptrINS_11ConstantIntESt14default_deleteIS3_EENS_12DenseMapInfoIjvEENS_6detail12DenseMapPairIjS6_EEEEjS6_S8_SB_E15LookupBucketForIjEEbRKT_RPKSB_ at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm11ConstantInt3getERNS_11LLVMContextERKNS_5APIntE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm11ConstantInt3getEPNS_11IntegerTypeEmb at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm11ConstantInt3getEPNS_4TypeEmb at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm29ConstantFoldBinaryInstructionEjPNS_8ConstantES1_ at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm12ConstantExpr3getEjPNS_8ConstantES2_jPNS_4TypeE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) PkgEval terminated after 2721.61s: test duration exceeded the time limit