Package evaluation of TrajGWAS on Julia 1.13.0-DEV.140 (fac1ce7906*) started at 2025-03-02T17:02:31.950


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# Set-up
#


Set-up completed after 0.24s


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# Installation
#

Installing TrajGWAS...
   Resolving package versions...
    Updating `~/.julia/environments/v1.13/Project.toml`
  [9514c204] + TrajGWAS v0.4.6
    Updating `~/.julia/environments/v1.13/Manifest.toml`
  [7d9f7c33] + Accessors v0.1.42
  [79e6a3ab] + Adapt v4.2.0
  [66dad0bd] + AliasTables v1.1.3
  [4fba245c] + ArrayInterface v7.18.0
⌅ [67c07d97] + Automa v0.8.4
⌃ [13072b0f] + AxisAlgorithms v1.0.1
⌅ [6db4b851] + BGEN v0.1.17
  [28d598bf] + BGZFStreams v0.3.2
  [6e4b80f9] + BenchmarkTools v1.6.0
  [47718e42] + BioGenerics v0.1.5
  [62783981] + BitTwiddlingConvenienceFunctions v0.1.6
  [e1450e63] + BufferedStreams v1.2.2
  [2a0fbf3d] + CPUSummary v0.2.6
  [336ed68f] + CSV v0.10.15
  [324d7699] + CategoricalArrays v0.10.8
  [d360d2e6] + ChainRulesCore v1.25.1
  [fb6a15b2] + CloseOpenIntervals v0.1.13
  [523fee87] + CodecBzip2 v0.8.5
  [ba30903b] + CodecXz v0.7.4
  [944b1d66] + CodecZlib v0.7.8
  [6b39b394] + CodecZstd v0.8.6
  [861a8166] + Combinatorics v1.0.2
  [38540f10] + CommonSolve v0.2.4
  [bbf7d656] + CommonSubexpressions v0.3.1
  [f70d9fcc] + CommonWorldInvalidations v1.0.0
  [34da2185] + Compat v4.16.0
  [a33af91c] + CompositionsBase v0.1.2
  [187b0558] + ConstructionBase v1.5.8
  [adafc99b] + CpuId v0.3.1
  [a8cc5b0e] + Crayons v4.1.1
  [a10d1c49] + DBInterface v2.6.1
  [9a962f9c] + DataAPI v1.16.0
  [a93c6f00] + DataFrames v1.7.0
  [864edb3b] + DataStructures v0.18.20
  [e2d170a0] + DataValueInterfaces v1.0.0
  [8bb1440f] + DelimitedFiles v1.9.1
  [163ba53b] + DiffResults v1.1.0
  [b552c78f] + DiffRules v1.15.1
  [31c24e10] + Distributions v0.25.117
  [ffbed154] + DocStringExtensions v0.9.3
  [48062228] + FilePathsBase v0.9.23
  [1a297f60] + FillArrays v1.13.0
  [6a86dc24] + FiniteDiff v2.27.0
  [f6369f11] + ForwardDiff v0.10.38
  [c27321d9] + Glob v1.3.1
  [3e5b6fbb] + HostCPUFeatures v0.1.17
  [34004b35] + HypergeometricFunctions v0.3.27
  [09f84164] + HypothesisTests v0.11.3
  [615f187c] + IfElse v0.1.1
  [842dd82b] + InlineStrings v1.4.3
⌅ [a98d9a8b] + Interpolations v0.14.0
  [3587e190] + InverseFunctions v0.1.17
  [41ab1584] + InvertedIndices v1.3.1
  [b6b21f68] + Ipopt v1.7.2
  [92d709cd] + IrrationalConstants v0.2.4
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [692b3bcd] + JLLWrappers v1.7.0
  [682c06a0] + JSON v0.21.4
  [0f8b85d8] + JSON3 v1.14.1
  [b964fa9f] + LaTeXStrings v1.4.0
  [10f19ff3] + LayoutPointers v0.1.17
  [d3d80556] + LineSearches v7.3.0
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [bdcacae8] + LoopVectorization v0.12.171
  [1914dd2f] + MacroTools v0.5.15
  [d125e4d3] + ManualMemory v0.1.8
  [b8f27783] + MathOptInterface v1.37.0
  [fdba3010] + MathProgBase v0.7.8
  [e1d29d7a] + Missings v1.2.0
  [d8a4904e] + MutableArithmetics v1.6.4
  [d41bc354] + NLSolversBase v7.8.3
⌅ [76087f3c] + NLopt v0.6.5
  [77ba4419] + NaNMath v1.1.2
  [6fe1bfb0] + OffsetArrays v1.15.0
  [429524aa] + Optim v1.11.0
  [bac558e1] + OrderedCollections v1.8.0
  [90014a1f] + PDMats v0.11.32
  [d96e819e] + Parameters v0.12.3
  [69de0a69] + Parsers v2.8.1
  [1d0040c9] + PolyesterWeave v0.2.2
  [2dfb63ee] + PooledArrays v1.4.3
  [85a6dd25] + PositiveFactorizations v0.2.4
  [aea7be01] + PrecompileTools v1.2.1
  [21216c6a] + Preferences v1.4.3
  [08abe8d2] + PrettyTables v2.4.0
  [92933f4c] + ProgressMeter v1.10.2
  [43287f4e] + PtrArrays v1.3.0
  [1fd47b50] + QuadGK v2.11.2
  [c84ed2f1] + Ratios v0.4.5
  [189a3867] + Reexport v1.2.2
  [ae029012] + Requires v1.3.1
  [79098fc4] + Rmath v0.8.0
  [f2b01f46] + Roots v2.2.6
  [fdea26ae] + SIMD v3.7.1
  [94e857df] + SIMDTypes v0.1.0
  [476501e8] + SLEEFPirates v0.6.43
  [0aa819cd] + SQLite v1.6.1
  [91c51154] + SentinelArrays v1.4.8
  [efcf1570] + Setfield v1.1.2
  [1277b4bf] + ShiftedArrays v2.0.0
  [4e780e97] + SnpArrays v0.3.22
  [a2af1166] + SortingAlgorithms v1.2.1
  [276daf66] + SpecialFunctions v2.5.0
  [aedffcd0] + Static v1.1.1
  [0d7ed370] + StaticArrayInterface v1.8.0
  [90137ffa] + StaticArrays v1.9.13
  [1e83bf80] + StaticArraysCore v1.4.3
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.7.0
  [2913bbd2] + StatsBase v0.34.4
  [4c63d2b9] + StatsFuns v1.3.2
  [3eaba693] + StatsModels v0.7.4
  [892a3eda] + StringManipulation v0.4.1
  [856f2bd8] + StructTypes v1.11.0
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.0
  [8290d209] + ThreadingUtilities v0.5.2
  [9514c204] + TrajGWAS v0.4.6
⌅ [3bb67fe8] + TranscodingStreams v0.9.13
  [3a884ed6] + UnPack v1.0.2
  [a620830f] + VCFTools v0.2.10
  [28eba6e3] + VariantCallFormat v0.5.6
  [3d5dd08c] + VectorizationBase v0.21.71
  [ea10d353] + WeakRefStrings v1.4.2
  [2ff19380] + WiSER v0.2.6
⌅ [efce3f68] + WoodburyMatrices v0.5.6
  [76eceee3] + WorkerUtilities v1.6.1
  [ae81ac8f] + ASL_jll v0.1.3+0
  [6e34b625] + Bzip2_jll v1.0.9+0
  [e33a78d0] + Hwloc_jll v2.12.0+0
  [9cc047cb] + Ipopt_jll v300.1400.1700+0
  [d00139f3] + METIS_jll v5.1.3+0
  [d7ed1dd3] + MUMPS_seq_jll v500.700.301+0
  [079eb43e] + NLopt_jll v2.10.0+0
  [656ef2d0] + OpenBLAS32_jll v0.3.29+0
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [f50d1b31] + Rmath_jll v0.5.1+0
⌅ [319450e9] + SPRAL_jll v2024.5.8+0
  [76ed43ae] + SQLite_jll v3.48.0+0
  [ffd25f8a] + XZ_jll v5.6.4+1
  [3161d3a3] + Zstd_jll v1.5.7+1
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [f43a241f] + Downloads v1.7.0
  [7b1f6079] + FileWatching v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [b27032c2] + LibCURL v0.6.4
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.12.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [44cfe95a] + Pkg v1.12.0
  [de0858da] + Printf v1.11.0
  [9abbd945] + Profile v1.11.0
  [3fa0cd96] + REPL v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [1a1011a3] + SharedArrays v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.12.0
  [f489334b] + StyledStrings v1.11.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] + LibCURL_jll v8.11.1+1
  [e37daf67] + LibGit2_jll v1.9.0+0
  [29816b5a] + LibSSH2_jll v1.11.3+1
  [14a3606d] + MozillaCACerts_jll v2024.12.31
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [05823500] + OpenLibm_jll v0.8.5+0
  [458c3c95] + OpenSSL_jll v3.0.16+0
  [bea87d4a] + SuiteSparse_jll v7.8.3+2
  [83775a58] + Zlib_jll v1.3.1+2
  [8e850b90] + libblastrampoline_jll v5.12.0+0
  [8e850ede] + nghttp2_jll v1.64.0+1
  [3f19e933] + p7zip_jll v17.5.0+2
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`

Installation completed after 7.3s


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# Precompilation
#

Precompiling PkgEval dependencies...
No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml`
No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml`

Precompiling package dependencies...
Precompiling packages...
 100107.8 ms  ✓ MathOptInterface
  22015.9 ms  ✓ VCFTools
  40109.0 ms  ✓ SnpArrays
 128664.8 ms  ✓ NLopt
 145877.2 ms  ✓ Ipopt
 112407.3 ms  ✓ Optim → OptimMOIExt
 233366.8 ms  ✓ WiSER
 536326.2 ms  ✓ TrajGWAS
  8 dependencies successfully precompiled in 1332 seconds. 218 already precompiled.
  1 dependency had output during precompilation:
┌ TrajGWAS
│  WARNING: method definition for checkbounds at /home/pkgeval/.julia/packages/Interpolations/USkTk/src/Interpolations.jl:454 declares type variable N but does not use it.
│  WARNING: method definition for checkbounds at /home/pkgeval/.julia/packages/Interpolations/USkTk/src/Interpolations.jl:457 declares type variable N but does not use it.
│  WARNING: method definition for GriddedInterpolation at /home/pkgeval/.julia/packages/Interpolations/USkTk/src/gridded/gridded.jl:37 declares type variable pad but does not use it.
│  WARNING: method definition for GriddedInterpolation at /home/pkgeval/.julia/packages/Interpolations/USkTk/src/gridded/gridded.jl:60 declares type variable pad but does not use it.
│  WARNING: method definition for interpolate! at /home/pkgeval/.julia/packages/Interpolations/USkTk/src/deprecations.jl:30 declares type variable TWeights but does not use it.
└  

Precompilation completed after 1335.79s


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# Loading
#

Loading TrajGWAS...

Loading completed after 36.55s

PkgEval succeeded after 1398.67s