Package evaluation of RvSpectML on Julia 1.13.0-DEV.140 (fac1ce7906*) started at 2025-03-02T17:09:24.349 ################################################################################ # Set-up # Set-up completed after 0.27s ################################################################################ # Installation # Installing RvSpectML... Resolving package versions... Installed EchelleCCFs ─ v0.2.10 Updating `~/.julia/environments/v1.13/Project.toml` [1f61ac2c] + RvSpectML v0.2.9 Updating `~/.julia/environments/v1.13/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [99985d1d] + AbstractGPs v0.5.22 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.2.0 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.4.0 [7d9fca2a] + Arpack v0.5.4 [4fba245c] + ArrayInterface v7.18.0 [4c555306] + ArrayLayouts v1.11.1 [a9b6321e] + Atomix v1.1.1 ⌃ [13072b0f] + AxisAlgorithms v1.0.1 [198e06fe] + BangBang v0.4.4 [9718e550] + Baselet v0.1.1 [0e736298] + Bessels v0.2.8 ⌅ [8e7c35d0] + BlockArrays v0.16.43 [0a1fb500] + BlockDiagonals v0.1.42 [fa961155] + CEnum v0.5.0 [3b1b4be9] + CFITSIO v1.4.2 [336ed68f] + CSV v0.10.15 [082447d4] + ChainRules v1.72.3 [d360d2e6] + ChainRulesCore v1.25.1 [944b1d66] + CodecZlib v0.7.8 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.5.8 [a8cc5b0e] + Crayons v4.1.1 ⌅ [717857b8] + DSP v0.7.10 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.20 [e2d170a0] + DataValueInterfaces v1.0.0 [e7dc6d0d] + DataValues v0.4.13 [244e2a9f] + DefineSingletons v0.1.2 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.117 [ffbed154] + DocStringExtensions v0.9.3 [5d9f57b1] + EchelleCCFs v0.2.10 [533b6e3a] + EchelleInstruments v0.2.11 [7a1cc6ca] + FFTW v1.8.1 [525bcba6] + FITSIO v0.17.4 [5789e2e9] + FileIO v1.17.0 [48062228] + FilePathsBase v0.9.23 [1a297f60] + FillArrays v1.13.0 [6a86dc24] + FiniteDiff v2.27.0 [26cc04aa] + FiniteDifferences v0.12.32 [f6369f11] + ForwardDiff v0.10.38 ⌅ [d9f16b24] + Functors v0.4.12 [0c68f7d7] + GPUArrays v11.2.2 [46192b85] + GPUArraysCore v0.2.0 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] + HypergeometricFunctions v0.3.27 [7869d1d1] + IRTools v0.4.14 [22cec73e] + InitialValues v0.3.1 [842dd82b] + InlineStrings v1.4.3 ⌅ [a98d9a8b] + Interpolations v0.14.0 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [c8e1da08] + IterTools v1.10.0 [1c8ee90f] + IterableTables v1.0.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [033835bb] + JLD2 v0.5.11 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [63c18a36] + KernelAbstractions v0.9.34 [ec8451be] + KernelFunctions v0.10.64 [929cbde3] + LLVM v9.2.0 [b964fa9f] + LaTeXStrings v1.4.0 [d3d80556] + LineSearches v7.3.0 [2ab3a3ac] + LogExpFunctions v0.3.29 ⌅ [2fda8390] + LsqFit v0.13.0 [1914dd2f] + MacroTools v0.5.15 [128add7d] + MicroCollections v0.2.0 [e1d29d7a] + Missings v1.2.0 [6f286f6a] + MultivariateStats v0.10.3 [d41bc354] + NLSolversBase v7.8.3 [77ba4419] + NaNMath v1.1.2 [d9ec5142] + NamedTupleTools v0.14.3 [6fe1bfb0] + OffsetArrays v1.15.0 [429524aa] + Optim v1.11.0 [87e2bd06] + OptimBase v2.0.2 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.32 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.1 [f27b6e38] + Polynomials v4.0.18 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [92933f4c] + ProgressMeter v1.10.2 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [1a8c2f83] + Query v1.0.0 [2aef5ad7] + QueryOperators v0.9.3 [c84ed2f1] + Ratios v0.4.5 [c1ae055f] + RealDot v0.1.0 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [42d2dcc6] + Referenceables v0.1.3 [ae029012] + Requires v1.3.1 [708f8203] + Richardson v1.4.2 [79098fc4] + Rmath v0.8.0 [1f61ac2c] + RvSpectML v0.2.9 [c48404b2] + RvSpectMLBase v0.2.4 [17b2198d] + Scalpels v0.1.3 [7e506255] + ScopedValues v1.3.0 [91c51154] + SentinelArrays v1.4.8 [efcf1570] + Setfield v1.1.2 [a2af1166] + SortingAlgorithms v1.2.1 [dc90abb0] + SparseInverseSubset v0.1.2 [276daf66] + SpecialFunctions v2.5.0 [171d559e] + SplittablesBase v0.1.15 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 ⌅ [2913bbd2] + StatsBase v0.33.21 [4c63d2b9] + StatsFuns v1.3.2 [8188c328] + Stheno v0.8.2 [892a3eda] + StringManipulation v0.4.1 ⌅ [09ab397b] + StructArrays v0.6.21 [5e66a065] + TableShowUtils v0.2.6 [3783bdb8] + TableTraits v1.0.1 [382cd787] + TableTraitsUtils v1.0.2 [bd369af6] + Tables v1.12.0 ⌅ [e155a3c4] + TemporalGPs v0.6.6 [62fd8b95] + TensorCore v0.1.1 [11d239b0] + ThreadedIterables v0.2.1 [ac1d9e8a] + ThreadsX v0.1.12 [3bb67fe8] + TranscodingStreams v0.11.3 [28d57a85] + Transducers v0.4.84 [3a884ed6] + UnPack v1.0.2 [013be700] + UnsafeAtomics v0.3.0 [ea10d353] + WeakRefStrings v1.4.2 ⌅ [efce3f68] + WoodburyMatrices v0.5.6 [76eceee3] + WorkerUtilities v1.6.1 ⌅ [e88e6eb3] + Zygote v0.6.75 [700de1a5] + ZygoteRules v0.2.7 ⌅ [68821587] + Arpack_jll v3.5.1+1 [b3e40c51] + CFITSIO_jll v4.4.0+0 [f5851436] + FFTW_jll v3.3.10+3 [1d5cc7b8] + IntelOpenMP_jll v2025.0.4+0 [dad2f222] + LLVMExtra_jll v0.0.35+0 [856f044c] + MKL_jll v2025.0.1+1 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.11.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2024.12.31 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Building EchelleCCFs → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/0d08f486f808934912eb53ddd57fcf2fb58cb773/build.log` Installation completed after 13.47s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml` No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml` Precompiling package dependencies... Precompiling packages... 1597.9 ms ? ThreadedIterables 15084.2 ms ✓ Scalpels 39017.6 ms ✓ AbstractGPs 193796.9 ms ✓ EchelleCCFs 98786.7 ms ✓ Zygote 43445.6 ms ✓ EchelleInstruments 49966.2 ms ✓ Stheno 10578.4 ms ✓ Zygote → ZygoteDistancesExt 130073.8 ms ? TemporalGPs 279376.2 ms ? RvSpectML 7 dependencies successfully precompiled in 873 seconds. 243 already precompiled. 3 dependencies failed but may be precompilable after restarting julia 6 dependencies had output during precompilation: ┌ EchelleCCFs │ WARNING: method definition for calc_ccf_sample_covar_helper! at /home/pkgeval/.julia/packages/EchelleCCFs/cB51N/src/calc_rv/ccf_sample_covar.jl:37 declares type variable T1 but does not use it. │ WARNING: method definition for calc_ccf_sample_covar_helper! at /home/pkgeval/.julia/packages/EchelleCCFs/cB51N/src/calc_rv/ccf_sample_covar.jl:37 declares type variable T1 but does not use it. │ WARNING: method definition for #calc_ccf_weights_empirical#18 at /home/pkgeval/.julia/packages/EchelleCCFs/cB51N/src/calc_rv/ccf_sample_covar.jl:92 declares type variable A3 but does not use it. │ WARNING: method definition for calc_ccf_weights_empirical at /home/pkgeval/.julia/packages/EchelleCCFs/cB51N/src/calc_rv/ccf_sample_covar.jl:92 declares type variable T3 but does not use it. │ WARNING: method definition for calc_ccf_weights_empirical at /home/pkgeval/.julia/packages/EchelleCCFs/cB51N/src/calc_rv/ccf_sample_covar.jl:92 declares type variable T3 but does not use it. │ WARNING: method definition for calc_ccf_sample_covar_reduced_rank_helper at /home/pkgeval/.julia/packages/EchelleCCFs/cB51N/src/calc_rv/ccf_covar_model.jl:29 declares type variable T1 but does not use it. │ WARNING: method definition for calc_ccf_sample_covar_reduced_rank_helper at /home/pkgeval/.julia/packages/EchelleCCFs/cB51N/src/calc_rv/ccf_covar_model.jl:29 declares type variable T1 but does not use it. │ WARNING: method definition for est_covar_for_obs at /home/pkgeval/.julia/packages/EchelleCCFs/cB51N/src/calc_rv/ccf_covar_model.jl:44 declares type variable A1 but does not use it. │ WARNING: method definition for MeasureRvFromCCFTemplate at /home/pkgeval/.julia/packages/EchelleCCFs/cB51N/src/calc_rv/fit_template_plus_deriv_to_ccf.jl:68 declares type variable T3 but does not use it. └ ┌ Zygote │ WARNING: Constructor for type "Variable" was extended in `Zygote` without explicit qualification or import. │ NOTE: Assumed "Variable" refers to `IRTools.Variable`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Variable end`. │ Hint: To silence the warning, qualify `Variable` as `IRTools.Variable` in the method signature or explicitly `import IRTools: Variable`. └ ┌ TemporalGPs │ WARNING: Constructor for type "Variable" was extended in `Zygote` without explicit qualification or import. │ NOTE: Assumed "Variable" refers to `IRTools.Variable`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Variable end`. │ Hint: To silence the warning, qualify `Variable` as `IRTools.Variable` in the method signature or explicitly `import IRTools: Variable`. │ WARNING: Method definition rrule(Type{T}, Tuple) where {T<:(StaticArraysCore.SArray{S, T, N, L} where L where N where T where S<:Tuple)} in module StaticArraysChainRulesCoreExt at /home/pkgeval/.julia/packages/StaticArrays/LSPcF/ext/StaticArraysChainRulesCoreExt.jl:28 overwritten in module TemporalGPs at /home/pkgeval/.julia/packages/TemporalGPs/swuDu/src/util/chainrules.jl:31. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ RvSpectML │ WARNING: method definition for calc_ccf_sample_covar_helper! at /home/pkgeval/.julia/packages/EchelleCCFs/cB51N/src/calc_rv/ccf_sample_covar.jl:37 declares type variable T1 but does not use it. │ WARNING: method definition for calc_ccf_sample_covar_helper! at /home/pkgeval/.julia/packages/EchelleCCFs/cB51N/src/calc_rv/ccf_sample_covar.jl:37 declares type variable T1 but does not use it. │ WARNING: method definition for #calc_ccf_weights_empirical#18 at /home/pkgeval/.julia/packages/EchelleCCFs/cB51N/src/calc_rv/ccf_sample_covar.jl:92 declares type variable A3 but does not use it. │ WARNING: method definition for calc_ccf_weights_empirical at /home/pkgeval/.julia/packages/EchelleCCFs/cB51N/src/calc_rv/ccf_sample_covar.jl:92 declares type variable T3 but does not use it. │ WARNING: method definition for calc_ccf_weights_empirical at /home/pkgeval/.julia/packages/EchelleCCFs/cB51N/src/calc_rv/ccf_sample_covar.jl:92 declares type variable T3 but does not use it. │ WARNING: method definition for calc_ccf_sample_covar_reduced_rank_helper at /home/pkgeval/.julia/packages/EchelleCCFs/cB51N/src/calc_rv/ccf_covar_model.jl:29 declares type variable T1 but does not use it. │ WARNING: method definition for calc_ccf_sample_covar_reduced_rank_helper at /home/pkgeval/.julia/packages/EchelleCCFs/cB51N/src/calc_rv/ccf_covar_model.jl:29 declares type variable T1 but does not use it. │ WARNING: method definition for est_covar_for_obs at /home/pkgeval/.julia/packages/EchelleCCFs/cB51N/src/calc_rv/ccf_covar_model.jl:44 declares type variable A1 but does not use it. │ WARNING: method definition for MeasureRvFromCCFTemplate at /home/pkgeval/.julia/packages/EchelleCCFs/cB51N/src/calc_rv/fit_template_plus_deriv_to_ccf.jl:68 declares type variable T3 but does not use it. │ WARNING: method definition for calc_d2fluxdlnlambda2! at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/interp/common.jl:52 declares type variable T3 but does not use it. │ WARNING: method definition for spectra_interpolate at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/interp/sinc/low_level.jl:53 declares type variable T4 but does not use it. │ WARNING: method definition for spectra_interpolate at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/interp/sinc/low_level.jl:53 declares type variable T4 but does not use it. │ WARNING: Constructor for type "Variable" was extended in `Zygote` without explicit qualification or import. │ NOTE: Assumed "Variable" refers to `IRTools.Variable`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Variable end`. │ Hint: To silence the warning, qualify `Variable` as `IRTools.Variable` in the method signature or explicitly `import IRTools: Variable`. │ WARNING: Method definition rrule(Type{T}, Tuple) where {T<:(StaticArraysCore.SArray{S, T, N, L} where L where N where T where S<:Tuple)} in module StaticArraysChainRulesCoreExt at /home/pkgeval/.julia/packages/StaticArrays/LSPcF/ext/StaticArraysChainRulesCoreExt.jl:28 overwritten in module TemporalGPs at /home/pkgeval/.julia/packages/TemporalGPs/swuDu/src/util/chainrules.jl:31. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ EchelleInstruments │ WARNING: method definition for checkbounds at /home/pkgeval/.julia/packages/Interpolations/USkTk/src/Interpolations.jl:454 declares type variable N but does not use it. │ WARNING: method definition for checkbounds at /home/pkgeval/.julia/packages/Interpolations/USkTk/src/Interpolations.jl:457 declares type variable N but does not use it. │ WARNING: method definition for GriddedInterpolation at /home/pkgeval/.julia/packages/Interpolations/USkTk/src/gridded/gridded.jl:37 declares type variable pad but does not use it. │ WARNING: method definition for GriddedInterpolation at /home/pkgeval/.julia/packages/Interpolations/USkTk/src/gridded/gridded.jl:60 declares type variable pad but does not use it. │ WARNING: method definition for interpolate! at /home/pkgeval/.julia/packages/Interpolations/USkTk/src/deprecations.jl:30 declares type variable TWeights but does not use it. │ WARNING: method definition for make_good_orders_pixels_df at /home/pkgeval/.julia/packages/EchelleInstruments/H1CKx/src/neid/util.jl:50 declares type variable T4 but does not use it. │ WARNING: method definition for make_good_orders_pixels_df at /home/pkgeval/.julia/packages/EchelleInstruments/H1CKx/src/neid/util.jl:50 declares type variable T4 but does not use it. │ WARNING: method definition for make_good_orders_pixels_df at /home/pkgeval/.julia/packages/EchelleInstruments/H1CKx/src/neid/util.jl:65 declares type variable T4 but does not use it. │ WARNING: method definition for make_good_orders_pixels_df at /home/pkgeval/.julia/packages/EchelleInstruments/H1CKx/src/neid/util.jl:65 declares type variable T4 but does not use it. └ ┌ ThreadedIterables │ WARNING: Method definition tmapreduce(Function, Function, Any...) in module ThreadedIterables at /home/pkgeval/.julia/packages/ThreadedIterables/66Xsk/src/mapreduce.jl:8 overwritten at /home/pkgeval/.julia/packages/ThreadedIterables/66Xsk/src/mapreduce.jl:17. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ Precompilation completed after 869.72s ################################################################################ # Loading # Loading RvSpectML... Precompiling packages... 2203.5 ms ? ThreadedIterables 9676.3 ms ✓ Stheno 11545.6 ms ? TemporalGPs Info Given RvSpectML was explicitly requested, output will be shown live  WARNING: method definition for calc_d2fluxdlnlambda2! at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/interp/common.jl:52 declares type variable T3 but does not use it. WARNING: method definition for spectra_interpolate at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/interp/sinc/low_level.jl:53 declares type variable T4 but does not use it. WARNING: method definition for spectra_interpolate at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/interp/sinc/low_level.jl:53 declares type variable T4 but does not use it. WARNING: Method definition rrule(Type{T}, Tuple) where {T<:(StaticArraysCore.SArray{S, T, N, L} where L where N where T where S<:Tuple)} in module StaticArraysChainRulesCoreExt at /home/pkgeval/.julia/packages/StaticArrays/LSPcF/ext/StaticArraysChainRulesCoreExt.jl:28 overwritten in module TemporalGPs at /home/pkgeval/.julia/packages/TemporalGPs/swuDu/src/util/chainrules.jl:31. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 47484.5 ms ? RvSpectML 1 dependency successfully precompiled in 75 seconds. 249 already precompiled. 3 dependencies failed but may be precompilable after restarting julia 3 dependencies had output during precompilation: ┌ TemporalGPs │ WARNING: Method definition rrule(Type{T}, Tuple) where {T<:(StaticArraysCore.SArray{S, T, N, L} where L where N where T where S<:Tuple)} in module StaticArraysChainRulesCoreExt at /home/pkgeval/.julia/packages/StaticArrays/LSPcF/ext/StaticArraysChainRulesCoreExt.jl:28 overwritten in module TemporalGPs at /home/pkgeval/.julia/packages/TemporalGPs/swuDu/src/util/chainrules.jl:31. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ RvSpectML │ [Output was shown above] └ ┌ ThreadedIterables │ WARNING: Method definition tmapreduce(Function, Function, Any...) in module ThreadedIterables at /home/pkgeval/.julia/packages/ThreadedIterables/66Xsk/src/mapreduce.jl:8 overwritten at /home/pkgeval/.julia/packages/ThreadedIterables/66Xsk/src/mapreduce.jl:17. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ WARNING: method definition for calc_d2fluxdlnlambda2! at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/interp/common.jl:52 declares type variable T3 but does not use it. WARNING: method definition for spectra_interpolate at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/interp/sinc/low_level.jl:53 declares type variable T4 but does not use it. WARNING: method definition for spectra_interpolate at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/interp/sinc/low_level.jl:53 declares type variable T4 but does not use it. WARNING: Method definition rrule(Type{T}, Tuple) where {T<:(StaticArraysCore.SArray{S, T, N, L} where L where N where T where S<:Tuple)} in module StaticArraysChainRulesCoreExt at /home/pkgeval/.julia/packages/StaticArrays/LSPcF/ext/StaticArraysChainRulesCoreExt.jl:28 overwritten in module TemporalGPs at /home/pkgeval/.julia/packages/TemporalGPs/swuDu/src/util/chainrules.jl:31. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. WARNING: method definition for calc_d2fluxdlnlambda2! at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/interp/common.jl:52 declares type variable T3 but does not use it. WARNING: method definition for spectra_interpolate at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/interp/sinc/low_level.jl:53 declares type variable T4 but does not use it. WARNING: method definition for spectra_interpolate at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/interp/sinc/low_level.jl:53 declares type variable T4 but does not use it. Precompiling packages... 11112.8 ms ✓ StructArrays → StructArraysGPUArraysCoreExt 17586.0 ms ✓ GPUArrays Info Given TemporalGPs was explicitly requested, output will be shown live  WARNING: Method definition rrule(Type{T}, Tuple) where {T<:(StaticArraysCore.SArray{S, T, N, L} where L where N where T where S<:Tuple)} in module StaticArraysChainRulesCoreExt at /home/pkgeval/.julia/packages/StaticArrays/LSPcF/ext/StaticArraysChainRulesCoreExt.jl:28 overwritten in module TemporalGPs at /home/pkgeval/.julia/packages/TemporalGPs/swuDu/src/util/chainrules.jl:31. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 11910.7 ms ? TemporalGPs 2 dependencies successfully precompiled in 43 seconds. 137 already precompiled. 1 dependencies failed but may be precompilable after restarting julia 1 dependency had output during precompilation: ┌ TemporalGPs │ [Output was shown above] └ WARNING: Method definition rrule(Type{T}, Tuple) where {T<:(StaticArraysCore.SArray{S, T, N, L} where L where N where T where S<:Tuple)} in module StaticArraysChainRulesCoreExt at /home/pkgeval/.julia/packages/StaticArrays/LSPcF/ext/StaticArraysChainRulesCoreExt.jl:28 overwritten in module TemporalGPs at /home/pkgeval/.julia/packages/TemporalGPs/swuDu/src/util/chainrules.jl:31. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. Precompiling packages... 2183.3 ms ✓ ArrayInterface → ArrayInterfaceChainRulesExt 1 dependency successfully precompiled in 2 seconds. 40 already precompiled. WARNING: method definition for #construct_gp_posterior#2 at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/interp/gp_fast/low_level.jl:64 declares type variable AA3 but does not use it. WARNING: method definition for construct_gp_posterior at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/interp/gp_fast/low_level.jl:64 declares type variable T4 but does not use it. WARNING: method definition for construct_gp_posterior at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/interp/gp_fast/low_level.jl:64 declares type variable T3 but does not use it. WARNING: method definition for construct_gp_posterior at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/interp/gp_fast/low_level.jl:64 declares type variable T4 but does not use it. WARNING: method definition for construct_gp_posterior at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/interp/gp_fast/low_level.jl:64 declares type variable T3 but does not use it. WARNING: method definition for predict_mean at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/interp/gp_fast/low_level.jl:110 declares type variable AA3 but does not use it. WARNING: method definition for predict_mean at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/interp/gp_fast/low_level.jl:154 declares type variable T4 but does not use it. WARNING: method definition for predict_mean at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/interp/gp_fast/low_level.jl:154 declares type variable T4 but does not use it. WARNING: method definition for predict_deriv at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/interp/gp_fast/low_level.jl:204 declares type variable T4 but does not use it. WARNING: method definition for predict_deriv at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/interp/gp_fast/low_level.jl:204 declares type variable T4 but does not use it. WARNING: method definition for predict_deriv2 at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/interp/gp_fast/low_level.jl:217 declares type variable T4 but does not use it. WARNING: method definition for predict_deriv2 at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/interp/gp_fast/low_level.jl:217 declares type variable T4 but does not use it. WARNING: method definition for predict_mean_and_deriv at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/interp/gp_fast/low_level.jl:229 declares type variable T4 but does not use it. WARNING: method definition for predict_mean_and_deriv at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/interp/gp_fast/low_level.jl:229 declares type variable T4 but does not use it. WARNING: method definition for predict_mean_and_derivs at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/interp/gp_fast/low_level.jl:246 declares type variable T4 but does not use it. WARNING: method definition for predict_mean_and_derivs at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/interp/gp_fast/low_level.jl:246 declares type variable T4 but does not use it. WARNING: method definition for #find_lines_in_chunk#12 at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/line_finder/line_finder.jl:234 declares type variable T but does not use it. WARNING: method definition for get_line_shapes at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/line_shapes/get_line_shapes.jl:18 declares type variable T2 but does not use it. WARNING: method definition for get_line_shapes at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/line_shapes/get_line_shapes.jl:18 declares type variable T2 but does not use it. WARNING: method definition for get_line_shapes at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/line_shapes/get_line_shapes.jl:59 declares type variable T3 but does not use it. WARNING: method definition for get_line_shapes at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/line_shapes/get_line_shapes.jl:59 declares type variable T2 but does not use it. WARNING: method definition for get_line_shapes at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/line_shapes/get_line_shapes.jl:59 declares type variable T3 but does not use it. WARNING: method definition for get_line_shapes at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/line_shapes/get_line_shapes.jl:59 declares type variable T2 but does not use it. WARNING: method definition for calc_mean_dfluxdlnlambda at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/alg/project_flux_common_wavelengths.jl:27 declares type variable T2 but does not use it. WARNING: method definition for calc_mean_d2fluxdlnlambda2 at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/alg/project_flux_common_wavelengths.jl:52 declares type variable T2 but does not use it. WARNING: method definition for calc_rvs_from_taylor_expansion at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/alg/project_flux_common_wavelengths.jl:80 declares type variable T2 but does not use it. WARNING: method definition for calc_rvs_from_taylor_expansion at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/alg/project_flux_common_wavelengths.jl:80 declares type variable T1 but does not use it. WARNING: method definition for calc_rvs_from_taylor_expansion at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/alg/project_flux_common_wavelengths.jl:80 declares type variable T2 but does not use it. WARNING: method definition for calc_rvs_from_taylor_expansion at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/alg/project_flux_common_wavelengths.jl:80 declares type variable T1 but does not use it. WARNING: method definition for calc_rvs_from_taylor_expansion_alt at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/alg/project_flux_common_wavelengths.jl:109 declares type variable T2 but does not use it. WARNING: method definition for calc_rvs_from_taylor_expansion_alt at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/alg/project_flux_common_wavelengths.jl:109 declares type variable T1 but does not use it. WARNING: method definition for calc_rvs_from_taylor_expansion_alt at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/alg/project_flux_common_wavelengths.jl:109 declares type variable T2 but does not use it. WARNING: method definition for calc_rvs_from_taylor_expansion_alt at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/alg/project_flux_common_wavelengths.jl:109 declares type variable T1 but does not use it. WARNING: method definition for #calc_chunk_rvs_from_taylor_expansion#7 at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/alg/project_flux_common_wavelengths.jl:150 declares type variable RT but does not use it. WARNING: method definition for calc_chunk_rvs_from_taylor_expansion at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/alg/project_flux_common_wavelengths.jl:150 declares type variable T2 but does not use it. WARNING: method definition for calc_chunk_rvs_from_taylor_expansion at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/alg/project_flux_common_wavelengths.jl:150 declares type variable T1 but does not use it. WARNING: method definition for calc_chunk_rvs_from_taylor_expansion at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/alg/project_flux_common_wavelengths.jl:150 declares type variable T2 but does not use it. WARNING: method definition for calc_chunk_rvs_from_taylor_expansion at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/alg/project_flux_common_wavelengths.jl:150 declares type variable T1 but does not use it. WARNING: method definition for bin_rvs_nightly at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/alg/combine_obs.jl:50 declares type variable T2 but does not use it. WARNING: method definition for bin_rvs_nightly at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/alg/combine_obs.jl:50 declares type variable T1 but does not use it. WARNING: method definition for bin_rvs_nightly at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/alg/combine_obs.jl:50 declares type variable T2 but does not use it. WARNING: method definition for bin_rvs_nightly at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/alg/combine_obs.jl:50 declares type variable T1 but does not use it. WARNING: method definition for bin_times_and_rvs_nightly at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/alg/combine_obs.jl:55 declares type variable T2 but does not use it. WARNING: method definition for bin_times_and_rvs_nightly at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/alg/combine_obs.jl:55 declares type variable T1 but does not use it. WARNING: method definition for bin_times_and_rvs_nightly at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/alg/combine_obs.jl:55 declares type variable T2 but does not use it. WARNING: method definition for bin_times_and_rvs_nightly at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/alg/combine_obs.jl:55 declares type variable T1 but does not use it. WARNING: method definition for bin_rvs_max_Δt at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/alg/combine_obs.jl:70 declares type variable T2 but does not use it. WARNING: method definition for bin_rvs_max_Δt at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/alg/combine_obs.jl:70 declares type variable T1 but does not use it. WARNING: method definition for bin_rvs_max_Δt at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/alg/combine_obs.jl:70 declares type variable T2 but does not use it. WARNING: method definition for bin_rvs_max_Δt at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/alg/combine_obs.jl:70 declares type variable T1 but does not use it. WARNING: method definition for bin_times_and_rvs_max_Δt at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/alg/combine_obs.jl:80 declares type variable T2 but does not use it. WARNING: method definition for bin_times_and_rvs_max_Δt at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/alg/combine_obs.jl:80 declares type variable T1 but does not use it. WARNING: method definition for bin_times_and_rvs_max_Δt at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/alg/combine_obs.jl:80 declares type variable T2 but does not use it. WARNING: method definition for bin_times_and_rvs_max_Δt at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/alg/combine_obs.jl:80 declares type variable T1 but does not use it. Precompiling packages... 9703.6 ms ✓ MultivariateStats 1 dependency successfully precompiled in 11 seconds. 66 already precompiled. ERROR: LoadError: ConcurrencyViolationError("deadlock detected in loading RvSpectML -> RvSpectML") Stacktrace: [1] canstart_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) @ Base ./loading.jl:2214 [2] start_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) @ Base ./loading.jl:2222 [3] _require_prelocked(uuidkey::Base.PkgId, env::Nothing) @ Base ./loading.jl:2488 [4] macro expansion @ ./loading.jl:2421 [inlined] [5] macro expansion @ ./lock.jl:376 [inlined] [6] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2386 [7] #invoke_in_world#2 @ ./essentials.jl:1125 [inlined] [8] invoke_in_world @ ./essentials.jl:1121 [inlined] [9] require(into::Module, mod::Symbol) @ Base ./loading.jl:2366 [10] top-level scope @ ~/.julia/packages/RvSpectML/rcpRX/src/alg/dcpca.jl:18 [11] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:307 [12] top-level scope @ ~/.julia/packages/RvSpectML/rcpRX/src/RvSpectML.jl:84 [13] include(mod::Module, _path::String) @ Base ./Base.jl:306 [14] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2721 [15] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2493 [16] macro expansion @ ./loading.jl:2421 [inlined] [17] macro expansion @ ./lock.jl:376 [inlined] [18] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2386 [19] #invoke_in_world#2 @ ./essentials.jl:1125 [inlined] [20] invoke_in_world @ ./essentials.jl:1121 [inlined] [21] require(into::Module, mod::Symbol) @ Base ./loading.jl:2366 [22] eval(m::Module, e::Any) @ Core ./boot.jl:488 [23] exec_options(opts::Base.JLOptions) @ Base ./client.jl:294 [24] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/alg/dcpca.jl:1 in expression starting at /home/pkgeval/.julia/packages/RvSpectML/rcpRX/src/RvSpectML.jl:7 Loading failed after 257.11s ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so -g1 --check-bounds=yes --inline=yes --pkgimages=existing -e 'using RvSpectML'`, ProcessExited(1)) [1] Stacktrace: [1] pipeline_error @ ./process.jl:598 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:513 [3] run(::Cmd) @ Base ./process.jl:510 [4] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:193 [5] include(mod::Module, _path::String) @ Base ./Base.jl:306 [6] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [7] _start() @ Base ./client.jl:560 in expression starting at /PkgEval.jl/scripts/evaluate.jl:184 PkgEval failed after 1185.28s: illegal method overwrites during precompilation