Package evaluation of ReactiveDynamics on Julia 1.13.0-DEV.140 (fac1ce7906*) started at 2025-03-02T22:35:28.798 ################################################################################ # Set-up # Set-up completed after 0.22s ################################################################################ # Installation # Installing ReactiveDynamics... Resolving package versions... Installed Conda ── v1.10.2 Installed IJulia ─ v1.26.0 Updating `~/.julia/environments/v1.13/Project.toml` [c7456e7d] + ReactiveDynamics v0.2.7 Updating `~/.julia/environments/v1.13/Manifest.toml` ⌅ [47edcb42] + ADTypes v0.2.7 [a4c015fc] + ANSIColoredPrinters v0.0.1 ⌅ [c3fe647b] + AbstractAlgebra v0.34.7 [6e696c72] + AbstractPlutoDingetjes v1.3.2 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 ⌅ [79e6a3ab] + Adapt v3.7.2 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 ⌃ [4fba245c] + ArrayInterface v7.7.1 [4c555306] + ArrayLayouts v1.11.1 ⌅ [aae01518] + BandedMatrices v0.17.38 [e2ed5e7c] + Bijections v0.1.9 [d1d4a3ce] + BitFlags v0.1.9 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 ⌅ [764a87c0] + BoundaryValueDiffEq v4.0.1 [fa961155] + CEnum v0.5.0 [2a0fbf3d] + CPUSummary v0.2.6 [336ed68f] + CSV v0.10.15 ⌅ [134e5e36] + Catlab v0.14.17 [d360d2e6] + ChainRulesCore v1.25.1 [fb6a15b2] + CloseOpenIntervals v0.1.13 [944b1d66] + CodecZlib v0.7.8 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[9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.11.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2024.12.31 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [efcefdf7] + PCRE2_jll v10.44.0+1 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Building Conda ─→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/b19db3927f0db4151cb86d073689f2428e524576/build.log` Building IJulia → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/1b1299f7d6617291f3d260e9f5b0250afdaac8c0/build.log` Installation completed after 14.59s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml` No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml` Precompiling package dependencies... Precompiling packages... 6622.6 ms ✓ SciMLOperators ✗ ZMQ 86689.8 ms ✓ Groebner 5122.3 ms ✓ ArrayInterface → ArrayInterfaceBandedMatricesExt 5070.3 ms ✓ FiniteDiff → FiniteDiffBandedMatricesExt 27701.9 ms ✓ ComponentArrays 17016.7 ms ✓ LabelledArrays ✗ Pluto 97759.6 ms ✓ LoopVectorization 13399.8 ms ✓ Optim 1755.2 ms ✓ SciMLOperators → SciMLOperatorsStaticArraysCoreExt 1742.8 ms ✓ SciMLOperators → SciMLOperatorsSparseArraysExt ✗ IJulia 2300.8 ms ✓ ComponentArrays → ComponentArraysConstructionBaseExt 3067.4 ms ✓ ComponentArrays → ComponentArraysStaticArraysExt 2221.8 ms ✓ ComponentArrays → ComponentArraysAdaptExt 2436.3 ms ✓ ComponentArrays → ComponentArraysRecursiveArrayToolsExt 79162.9 ms ✓ SymbolicUtils 6837.3 ms ✓ LoopVectorization → SpecialFunctionsExt 121057.6 ms ✓ LoopVectorization → ForwardDiffExt 27709.6 ms ✓ TriangularSolve 31118.7 ms ✓ SciMLBase 32801.1 ms ✓ SparseDiffTools ✗ Plots → IJuliaExt 44523.3 ms ✓ RecursiveFactorization 112604.9 ms ✓ DiffEqBase 296301.1 ms ✓ Symbolics 7417.3 ms ✓ ComponentArrays → ComponentArraysSciMLBaseExt 12785.1 ms ✓ SparseDiffTools → SparseDiffToolsPolyesterExt 136976.2 ms ✓ LinearSolve 81888.4 ms ✓ SciMLNLSolve 4992.8 ms ✓ DiffEqBase → DiffEqBaseGeneralizedGeneratedExt 81346.6 ms ✓ DiffEqBase → DiffEqBaseDistributionsExt 6059.4 ms ✓ DiffEqBase → DiffEqBaseUnitfulExt 9434.8 ms ✓ SimpleNonlinearSolve 22307.6 ms ✓ DiffEqCallbacks 17238.6 ms ✓ Sundials 26840.5 ms ✓ JumpProcesses 128168.4 ms ✓ SparseDiffTools → SparseDiffToolsSymbolicsExt 138520.9 ms ✓ DiffEqNoiseProcess 217511.5 ms ✓ NonlinearSolve 15661.7 ms ✓ SteadyStateDiffEq 14515.2 ms ✓ JumpProcesses → JumpProcessFastBroadcastExt 41038.6 ms ✓ BoundaryValueDiffEq ✗ OrdinaryDiffEq ✗ DelayDiffEq ✗ StochasticDiffEq ✗ DifferentialEquations ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 20 running 0 of 2 signal (10): User defined signal 1 unknown function (ip: 0x737052b0ef14) at /lib/x86_64-linux-gnu/libc.so.6 pthread_cond_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv_cond_wait at /workspace/srcdir/libuv/src/unix/thread.c:822 ijl_task_get_next at /source/src/scheduler.c:520 poptask at ./task.jl:1187 wait at ./task.jl:1199 #wait#400 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:185 profile_printing_listener at ./Base.jl:332 #start_profile_listener##0 at ./Base.jl:352 jfptr_YY.start_profile_listenerYY.YY.0_59880.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 jl_apply at /source/src/julia.h:2290 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 poptask at ./task.jl:1187 wait at ./task.jl:1199 #wait#400 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:185 #633 at ./asyncevent.jl:359 jfptr_YY.633_74077.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 jl_apply at /source/src/julia.h:2290 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (interactive) Task 0x0000737017e1c880 Total snapshots: 184. Utilization: 0% ╎184 @Base/asyncevent.jl:359 (::Base.var"#633#634"{FileWatching.Pidfile.var… ╎ 184 @Base/asyncevent.jl:185 _trywait(t::Timer) ╎ 184 @Base/condition.jl:136 wait ╎ 184 @Base/condition.jl:141 wait(c::Base.GenericCondition{Base.Threads.S… ╎ 184 @Base/task.jl:1199 wait() 183╎ 184 @Base/task.jl:1187 poptask(W::Base.IntrusiveLinkedListSynchronize… Thread 2 (default) Task 0x0000737044a00100 Total snapshots: 184. Utilization: 0% ╎184 @Base/Base.jl:352 (::Base.var"#start_profile_listener##0#start_profile… ╎ 184 @Base/Base.jl:332 profile_printing_listener(cond::Base.AsyncCondition) ╎ 184 @Base/asyncevent.jl:185 _trywait(t::Base.AsyncCondition) ╎ 184 @Base/condition.jl:136 wait ╎ 184 @Base/condition.jl:141 wait(c::Base.GenericCondition{Base.Threads.… ╎ 184 @Base/task.jl:1199 wait() 183╎ ╎ 184 @Base/task.jl:1187 poptask(W::Base.IntrusiveLinkedListSynchroniz… ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 2 signal (10): User defined signal 1 unknown function (ip: 0x78e7800ebf14) at /lib/x86_64-linux-gnu/libc.so.6 pthread_cond_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv_cond_wait at /workspace/srcdir/libuv/src/unix/thread.c:822 ijl_task_get_next at /source/src/scheduler.c:520 poptask at ./task.jl:1187 wait at ./task.jl:1199 #wait#400 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:185 profile_printing_listener at ./Base.jl:332 #start_profile_listener##0 at ./Base.jl:352 jfptr_YY.start_profile_listenerYY.YY.0_59880.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 jl_apply at /source/src/julia.h:2290 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 poptask at ./task.jl:1187 wait at ./task.jl:1199 task_done_hook at ./task.jl:839 jfptr_task_done_hook_74867.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 jl_apply at /source/src/julia.h:2290 [inlined] jl_finish_task at /source/src/task.c:345 start_task at /source/src/task.c:1260 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (interactive) Task 0x000078e7350e6c20 Total snapshots: 258. Utilization: 0% ╎258 @Base/task.jl:839 task_done_hook(t::Task) ╎ 258 @Base/task.jl:1199 wait() 257╎ 258 @Base/task.jl:1187 poptask(W::Base.IntrusiveLinkedListSynchronized{T… Thread 2 (default) Task 0x000078e772000100 Total snapshots: 258. Utilization: 0% ╎258 @Base/Base.jl:352 (::Base.var"#start_profile_listener##0#start_profile… ╎ 258 @Base/Base.jl:332 profile_printing_listener(cond::Base.AsyncCondition) ╎ 258 @Base/asyncevent.jl:185 _trywait(t::Base.AsyncCondition) ╎ 258 @Base/condition.jl:136 wait ╎ 258 @Base/condition.jl:141 wait(c::Base.GenericCondition{Base.Threads.… ╎ 258 @Base/task.jl:1199 wait() 257╎ ╎ 258 @Base/task.jl:1187 poptask(W::Base.IntrusiveLinkedListSynchroniz… [20] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/precompile.jl:37 unknown function (ip: 0x737052b0ef14) at /lib/x86_64-linux-gnu/libc.so.6 pthread_cond_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv_cond_wait at /workspace/srcdir/libuv/src/unix/thread.c:822 ijl_task_get_next at /source/src/scheduler.c:520 poptask at ./task.jl:1187 wait at ./task.jl:1199 #wait#400 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:185 PkgEval terminated after 2752.77s: test duration exceeded the time limit