Package evaluation of QuasiGLM on Julia 1.13.0-DEV.140 (fac1ce7906*) started at 2025-03-02T12:21:47.698 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 7.96s ################################################################################ # Installation # Installing QuasiGLM... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [e2a73505] + QuasiGLM v0.1.0 Updating `~/.julia/environments/v1.13/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [34da2185] + Compat v4.16.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 ⌃ [a93c6f00] + DataFrames v1.3.6 [864edb3b] + DataStructures v0.18.20 [e2d170a0] + DataValueInterfaces v1.0.0 [31c24e10] + Distributions v0.25.117 [ffbed154] + DocStringExtensions v0.9.3 [1a297f60] + FillArrays v1.13.0 [59287772] + Formatting v0.4.3 [38e38edf] + GLM v1.9.0 [34004b35] + HypergeometricFunctions v0.3.27 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.32 [2dfb63ee] + PooledArrays v1.4.3 [21216c6a] + Preferences v1.4.3 ⌅ [08abe8d2] + PrettyTables v1.3.1 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [e2a73505] + QuasiGLM v0.1.0 [189a3867] + Reexport v1.2.2 [79098fc4] + Rmath v0.8.0 [1277b4bf] + ShiftedArrays v2.0.0 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [4c63d2b9] + StatsFuns v1.3.2 [3eaba693] + StatsModels v0.7.4 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.3.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 2.85s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 51.43s ################################################################################ # Testing # Testing QuasiGLM Status `/tmp/jl_MlAVav/Project.toml` [324d7699] CategoricalArrays v0.10.8 ⌃ [a93c6f00] DataFrames v1.3.6 [31c24e10] Distributions v0.25.117 [38e38edf] GLM v1.9.0 ⌅ [08abe8d2] PrettyTables v1.3.1 [e2a73505] QuasiGLM v0.1.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_MlAVav/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [324d7699] CategoricalArrays v0.10.8 [34da2185] Compat v4.16.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 ⌃ [a93c6f00] DataFrames v1.3.6 [864edb3b] DataStructures v0.18.20 [e2d170a0] DataValueInterfaces v1.0.0 [31c24e10] Distributions v0.25.117 [ffbed154] DocStringExtensions v0.9.3 [1a297f60] FillArrays v1.13.0 [59287772] Formatting v0.4.3 [38e38edf] GLM v1.9.0 [34004b35] HypergeometricFunctions v0.3.27 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [2ab3a3ac] LogExpFunctions v0.3.29 [e1d29d7a] Missings v1.2.0 [bac558e1] OrderedCollections v1.8.0 [90014a1f] PDMats v0.11.32 [2dfb63ee] PooledArrays v1.4.3 [21216c6a] Preferences v1.4.3 ⌅ [08abe8d2] PrettyTables v1.3.1 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [e2a73505] QuasiGLM v0.1.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [1277b4bf] ShiftedArrays v2.0.0 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.0 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [4c63d2b9] StatsFuns v1.3.2 [3eaba693] StatsModels v0.7.4 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.0.16+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [8e850b90] libblastrampoline_jll v5.12.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Dispersion parameter (ϕ) for model taken to be 1.2933 Standard errors are multiplied by 1.13723 to adjust for dispersion parameter (ϕ) Coefficients: ────────────────────────────────────────────────────────────────────────────────────────────── Parameter Estimate Std. Error t value Pr(>|t|) Lower 95% Upper 95% ────────────────────────────────────────────────────────────────────────────────────────────── (Intercept) 3.04452 0.194352 15.665 1.92696e-5 2.54493 3.54412 Outcome: 2 -0.454255 0.229915 -1.97575 0.105148 -1.04527 0.136761 Outcome: 3 -0.292987 0.219193 -1.33666 0.238926 -0.856441 0.270467 Treatment: 2 3.89684e-16 0.227447 1.7133e-15 1.0 -0.58467 0.58467 Treatment: 3 -9.38599e-17 0.227447 -4.12668e-16 1.0 -0.58467 0.58467 ────────────────────────────────────────────────────────────────────────────────────────────── Dispersion parameter (ϕ) for model taken to be 0.06511 Standard errors are multiplied by 0.25517 to adjust for dispersion parameter (ϕ) Coefficients: ────────────────────────────────────────────────────────────────────────────────────── Parameter Estimate Std. Error t value Pr(>|t|) Lower 95% Upper 95% ────────────────────────────────────────────────────────────────────────────────────── (Intercept) -8.05464 1.2158 -6.62498 5.12512e-9 -10.4777 -5.63156 variety: 2 1.63906 1.2341 1.32814 0.18827 -0.820506 4.09862 variety: 3 3.32651 1.1534 2.88408 0.00515587 1.02778 5.62523 variety: 4 3.58222 1.1493 3.11688 0.00261395 1.29167 5.87277 variety: 5 3.58305 1.14929 3.11763 0.0026081 1.29252 5.87357 variety: 6 3.89325 1.14567 3.39822 0.00110165 1.60993 6.17657 variety: 7 4.73001 1.14101 4.14545 9.03296e-5 2.45597 7.00405 variety: 8 5.52268 1.14088 4.84073 7.02417e-6 3.24891 7.79645 variety: 9 6.79458 1.14609 5.9285 9.36e-8 4.51043 9.07872 site: 2 0.150085 0.619763 0.242165 0.809331 -1.0851 1.38527 site: 3 0.689466 0.575815 1.19737 0.235034 -0.458131 1.83706 site: 4 1.04816 0.55618 1.88457 0.0634694 -0.0603066 2.15663 site: 5 1.61471 0.535823 3.01351 0.00354876 0.546812 2.6826 site: 6 2.37116 0.521568 4.54621 2.12138e-5 1.33167 3.41064 site: 7 2.57053 0.519395 4.94908 4.64087e-6 1.53538 3.60568 site: 8 3.34204 0.515161 6.48737 9.15526e-9 2.31533 4.36876 site: 9 3.50005 0.515 6.79621 2.48114e-9 2.47366 4.52644 site: 10 4.25301 0.517466 8.21891 5.4607e-12 3.2217 5.28432 ────────────────────────────────────────────────────────────────────────────────────── Test Summary: | Pass Total Time QuasiGLM.jl | 2 2 1m18.8s Testing QuasiGLM tests passed Testing completed after 102.8s PkgEval succeeded after 177.06s