Package evaluation of PEtab on Julia 1.13.0-DEV.140 (fac1ce7906*) started at 2025-03-02T23:23:10.270 ################################################################################ # Set-up # Set-up completed after 0.13s ################################################################################ # Installation # Installing PEtab... Resolving package versions... Installed OffsetArrays ───────────────────── v1.15.0 Installed OrdinaryDiffEqRosenbrock ───────── v1.6.0 Installed StatsFuns ──────────────────────── v1.3.2 Installed Accessors ──────────────────────── v0.1.42 Installed HypergeometricFunctions ────────── v0.3.27 Installed MutableArithmetics ─────────────── v1.6.4 Installed OrdinaryDiffEqSDIRK ────────────── v1.2.0 Installed Preferences ────────────────────── v1.4.3 Installed PDMats ─────────────────────────── v0.11.32 Installed Unitful ────────────────────────── v1.22.0 Installed FindFirstFunctions ─────────────── v1.4.1 Installed DomainSets ─────────────────────── v0.7.15 Installed JuliaFormatter ─────────────────── v1.0.62 Installed NonlinearSolve ─────────────────── v4.4.0 Installed SciMLJacobianOperators ─────────── v0.1.1 Installed InlineStrings ──────────────────── v1.4.3 Installed TimerOutputs ───────────────────── v0.5.28 Installed SBML_jll ───────────────────────── v5.20.1+0 Installed EnumX ──────────────────────────── v1.0.4 Installed Polyester ──────────────────────── v0.7.16 Installed StaticArrays ───────────────────── v1.9.13 Installed Sundials_jll ───────────────────── v5.2.3+0 Installed Bijections ─────────────────────── v0.1.9 Installed CEnum ──────────────────────────── v0.5.0 Installed DelimitedFiles ─────────────────── v1.9.1 Installed OrdinaryDiffEqCore ─────────────── v1.18.1 Installed RecursiveArrayTools ────────────── v3.31.0 Installed InvertedIndices ────────────────── v1.3.1 Installed FunctionWrappers ───────────────── v1.1.3 Installed MaybeInplace ───────────────────── v0.1.4 Installed IntelOpenMP_jll ────────────────── v2025.0.4+0 Installed Statistics ─────────────────────── v1.11.1 Installed Static ─────────────────────────── v1.1.1 Installed RandomNumbers ──────────────────── v1.6.0 Installed Missings ───────────────────────── v1.2.0 Installed Tricks ─────────────────────────── v0.1.10 Installed FiniteDiff ─────────────────────── v2.27.0 Installed DataFrames ─────────────────────── v1.7.0 Installed SIMDTypes ──────────────────────── v0.1.0 Installed IrrationalConstants ────────────── v0.2.4 Installed FastPower ──────────────────────── v1.1.1 Installed MuladdMacro ────────────────────── v0.2.4 Installed ComponentArrays ────────────────── v0.15.25 Installed MultivariatePolynomials ────────── v0.5.7 Installed ArnoldiMethod ──────────────────── v0.4.0 Installed Functors ───────────────────────── v0.5.2 Installed SciMLBase ──────────────────────── v2.75.1 Installed CpuId ──────────────────────────── v0.3.1 Installed DiffEqBase ─────────────────────── v6.164.1 Installed Catalyst ───────────────────────── v14.4.1 Installed PtrArrays ──────────────────────── v1.3.0 Installed CompositeTypes ─────────────────── v0.1.4 Installed NonlinearSolveQuasiNewton ──────── v1.2.0 Installed ADTypes ────────────────────────── v1.13.0 Installed PEtab ──────────────────────────── v3.6.0 Installed SimpleUnPack ───────────────────── v1.1.0 Installed SpecialFunctions ───────────────── v2.5.0 Installed Symbolics ──────────────────────── v6.29.2 Installed LinearSolve ────────────────────── v3.4.0 Installed Sobol ──────────────────────────── v1.5.0 Installed OrdinaryDiffEqNonlinearSolve ───── v1.5.0 Installed BracketingNonlinearSolve ───────── v1.1.0 Installed SentinelArrays ─────────────────── v1.4.8 Installed SimpleNonlinearSolve ───────────── v2.1.0 Installed IfElse ─────────────────────────── v0.1.1 Installed LineSearch ─────────────────────── v0.1.4 Installed StringEncodings ────────────────── v0.3.7 Installed NonlinearSolveSpectralMethods ──── v1.1.0 Installed DiffEqNoiseProcess ─────────────── v5.24.1 Installed StaticArraysCore ───────────────── v1.4.3 Installed SBMLImporter ───────────────────── v2.8.1 Installed NaNMath ────────────────────────── v1.1.2 Installed CommonMark ─────────────────────── v0.8.15 Installed WorkerUtilities ────────────────── v1.6.1 Installed ThreadingUtilities ─────────────── v0.5.2 Installed ManualMemory ───────────────────── v0.1.8 Installed NLSolversBase ──────────────────── v7.8.3 Installed TranscodingStreams ─────────────── v0.11.3 Installed SparseMatrixColorings ──────────── v0.4.13 Installed Rmath_jll ──────────────────────── v0.5.1+0 Installed JumpProcesses ──────────────────── v9.14.2 Installed Random123 ──────────────────────── v1.7.0 Installed LazyArrays ─────────────────────── v2.6.1 Installed WeakRefStrings ─────────────────── v1.4.2 Installed CommonSubexpressions ───────────── v0.3.1 Installed ExprTools ──────────────────────── v0.1.10 Installed StatsAPI ───────────────────────── v1.7.0 Installed DataStructures ─────────────────── v0.18.20 Installed Compat ─────────────────────────── v4.16.0 Installed MLStyle ────────────────────────── v0.4.17 Installed Graphs ─────────────────────────── v1.12.0 Installed CommonWorldInvalidations ───────── v1.0.0 Installed CodecZlib ──────────────────────── v0.7.8 Installed StaticArrayInterface ───────────── v1.8.0 Installed Glob ───────────────────────────── v1.3.1 Installed ArrayLayouts ───────────────────── v1.11.1 Installed DispatchDoctor ─────────────────── v0.4.19 Installed StatsBase ──────────────────────── v0.34.4 Installed Expronicon ─────────────────────── v0.8.5 Installed DynamicPolynomials ─────────────── v0.6.1 Installed BitTwiddlingConvenienceFunctions ─ v0.1.6 Installed SciMLStructures ────────────────── v1.6.1 Installed DiffRules ──────────────────────── v1.15.1 Installed oneTBB_jll ─────────────────────── v2022.0.0+0 Installed FunctionWrappersWrappers ───────── v0.1.3 Installed ModelingToolkit ────────────────── v9.64.3 Installed LayoutPointers ─────────────────── v0.1.17 Installed Sundials ───────────────────────── v4.26.1 Installed TableTraits ────────────────────── v1.0.1 Installed LatticeRules ───────────────────── v0.0.1 Installed DiffResults ────────────────────── v1.1.0 Installed QuasiMonteCarlo ────────────────── v0.3.3 Installed PrettyTables ───────────────────── v2.4.0 Installed PositiveFactorizations ─────────── v0.2.4 Installed Inflate ────────────────────────── v0.1.5 Installed Parsers ────────────────────────── v2.8.1 Installed NonlinearSolveBase ─────────────── v1.5.0 Installed SciMLOperators ─────────────────── v0.3.12 Installed DiffEqCallbacks ────────────────── v4.3.0 Installed Setfield ───────────────────────── v1.1.2 Installed PooledArrays ───────────────────── v1.4.3 Installed MKL_jll ────────────────────────── v2025.0.1+1 Installed Format ─────────────────────────── v1.3.7 Installed JLLWrappers ────────────────────── v1.7.0 Installed SymbolicLimits ─────────────────── v0.2.2 Installed Tokenize ───────────────────────── v0.5.29 Installed ExproniconLite ─────────────────── v0.10.14 Installed EnzymeCore ─────────────────────── v0.8.8 Installed ConstructionBase ───────────────── v1.5.8 Installed DataValueInterfaces ────────────── v1.0.0 Installed NonlinearSolveFirstOrder ───────── v1.3.0 Installed OrderedCollections ─────────────── v1.8.0 Installed AbstractTrees ──────────────────── v0.4.5 Installed Combinatorics ──────────────────── v1.0.2 Installed PolyesterWeave ─────────────────── v0.2.2 Installed ChainRulesCore ─────────────────── v1.25.1 Installed FastClosures ───────────────────── v0.3.2 Installed ArrayInterface ─────────────────── v7.18.0 Installed Reexport ───────────────────────── v1.2.2 Installed LineSearches ───────────────────── v7.3.0 Installed CloseOpenIntervals ─────────────── v0.1.13 Installed AliasTables ────────────────────── v1.1.3 Installed LogExpFunctions ────────────────── v0.3.29 Installed CompositionsBase ───────────────── v0.1.2 Installed OpenSpecFun_jll ────────────────── v0.5.6+0 Installed MacroTools ─────────────────────── v0.5.15 Installed UnPack ─────────────────────────── v1.0.2 Installed InverseFunctions ───────────────── v0.1.17 Installed CommonSolve ────────────────────── v0.2.4 Installed PackageExtensionCompat ─────────── v1.0.2 Installed SimpleTraits ───────────────────── v0.9.4 Installed YAML ───────────────────────────── v0.4.13 Installed CSV ────────────────────────────── v0.10.15 Installed PreallocationTools ─────────────── v0.4.25 Installed GPUArraysCore ──────────────────── v0.2.0 Installed Crayons ────────────────────────── v4.1.1 Installed SCCNonlinearSolve ──────────────── v1.0.0 Installed DocStringExtensions ────────────── v0.9.3 Installed SBML ───────────────────────────── v1.6.0 Installed DifferentiationInterface ───────── v0.6.42 Installed Adapt ──────────────────────────── v4.2.0 Installed XML2_jll ───────────────────────── v2.13.6+1 Installed OrdinaryDiffEqBDF ──────────────── v1.2.0 Installed Rmath ──────────────────────────── v0.8.0 Installed IntegerMathUtils ───────────────── v0.1.2 Installed ReactionNetworkImporters ───────── v0.15.1 Installed StrideArraysCore ───────────────── v0.5.7 Installed Krylov ─────────────────────────── v0.9.10 Installed OrdinaryDiffEqDifferentiation ──── v1.4.0 Installed IntervalSets ───────────────────── v0.7.10 Installed Latexify ───────────────────────── v0.16.6 Installed Jieko ──────────────────────────── v0.2.1 Installed RuntimeGeneratedFunctions ──────── v0.5.13 Installed Tables ─────────────────────────── v1.12.0 Installed TermInterface ──────────────────── v2.0.0 Installed CPUSummary ─────────────────────── v0.2.6 Installed Moshi ──────────────────────────── v0.3.5 Installed DataAPI ────────────────────────── v1.16.0 Installed Optim ──────────────────────────── v1.11.0 Installed RecipesBase ────────────────────── v1.3.4 Installed Primes ─────────────────────────── v0.5.6 Installed ConcreteStructs ────────────────── v0.2.3 Installed SymbolicUtils ──────────────────── v3.16.0 Installed BlockArrays ────────────────────── v1.4.0 Installed IteratorInterfaceExtensions ────── v1.0.0 Installed Libiconv_jll ───────────────────── v1.18.0+0 Installed ReverseDiff ────────────────────── v1.15.3 Installed VertexSafeGraphs ───────────────── v0.2.0 Installed TruncatedStacktraces ───────────── v1.4.0 Installed URIs ───────────────────────────── v1.5.1 Installed PrecompileTools ────────────────── v1.2.1 Installed LaTeXStrings ───────────────────── v1.4.0 Installed PoissonRandom ──────────────────── v0.4.4 Installed Unityper ───────────────────────── v0.1.6 Installed WeakValueDicts ─────────────────── v0.1.0 Installed SymbolicIndexingInterface ──────── v0.3.38 Installed TestItems ──────────────────────── v1.0.0 Installed FilePathsBase ──────────────────── v0.9.23 Installed ResettableStacks ───────────────── v1.1.1 Installed ForwardDiff ────────────────────── v0.10.38 Installed QuadGK ─────────────────────────── v2.11.2 Installed Requires ───────────────────────── v1.3.1 Installed FillArrays ─────────────────────── v1.13.0 Installed FastBroadcast ──────────────────── v0.3.5 Installed Parameters ─────────────────────── v0.12.3 Installed CSTParser ──────────────────────── v3.4.3 Installed StringManipulation ─────────────── v0.4.1 Installed DynamicQuantities ──────────────── v1.4.0 Installed SparseDiffTools ────────────────── v2.23.1 Installed Distributions ──────────────────── v0.25.117 Installed SortingAlgorithms ──────────────── v1.2.1 Installing 7 artifacts Installed artifact OpenSpecFun 194.9 KiB Installed artifact Rmath 121.9 KiB Installed artifact Sundials 2.1 MiB Installed artifact oneTBB 435.6 KiB Installed artifact XML2 2.5 MiB Installed artifact SBML 5.8 MiB Installed artifact Libiconv 1.9 MiB Updating `~/.julia/environments/v1.13/Project.toml` [48d54b35] + PEtab v3.6.0 Updating `~/.julia/environments/v1.13/Manifest.toml` [47edcb42] + ADTypes v1.13.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.2.0 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.18.0 [4c555306] + ArrayLayouts v1.11.1 [e2ed5e7c] + Bijections v0.1.9 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] + BlockArrays v1.4.0 [70df07ce] + BracketingNonlinearSolve v1.1.0 [fa961155] + CEnum v0.5.0 [2a0fbf3d] + CPUSummary v0.2.6 [00ebfdb7] + CSTParser v3.4.3 [336ed68f] + CSV v0.10.15 [479239e8] + Catalyst v14.4.1 [d360d2e6] + ChainRulesCore v1.25.1 [fb6a15b2] + CloseOpenIntervals v0.1.13 [944b1d66] + CodecZlib v0.7.8 [861a8166] + Combinatorics v1.0.2 [a80b9123] + CommonMark v0.8.15 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.16.0 [b0b7db55] + ComponentArrays v0.15.25 [b152e2b5] + CompositeTypes v0.1.4 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.5.8 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.20 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [2b5f629d] + DiffEqBase v6.164.1 [459566f4] + DiffEqCallbacks v4.3.0 [77a26b50] + DiffEqNoiseProcess v5.24.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.6.42 [8d63f2c5] + DispatchDoctor v0.4.19 [31c24e10] + Distributions v0.25.117 [ffbed154] + DocStringExtensions v0.9.3 [5b8099bc] + DomainSets v0.7.15 [7c1d4256] + DynamicPolynomials v0.6.1 [06fc5a27] + DynamicQuantities v1.4.0 [4e289a0a] + EnumX v1.0.4 [f151be2c] + EnzymeCore v0.8.8 [e2ba6199] + ExprTools v0.1.10 ⌅ [6b7a57c9] + Expronicon v0.8.5 [55351af7] + ExproniconLite v0.10.14 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [a4df4552] + FastPower v1.1.1 [48062228] + FilePathsBase v0.9.23 [1a297f60] + FillArrays v1.13.0 [64ca27bc] + FindFirstFunctions v1.4.1 [6a86dc24] + FiniteDiff v2.27.0 [1fa38f19] + Format v1.3.7 [f6369f11] + ForwardDiff v0.10.38 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [d9f16b24] + Functors v0.5.2 [46192b85] + GPUArraysCore v0.2.0 [c27321d9] + Glob v1.3.1 [86223c79] + Graphs v1.12.0 [34004b35] + HypergeometricFunctions v0.3.27 [615f187c] + IfElse v0.1.1 [d25df0c9] + Inflate v0.1.5 [842dd82b] + InlineStrings v1.4.3 [18e54dd8] + IntegerMathUtils v0.1.2 [8197267c] + IntervalSets v0.7.10 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [ae98c720] + Jieko v0.2.1 [98e50ef6] + JuliaFormatter v1.0.62 [ccbc3e58] + JumpProcesses v9.14.2 [ba0b0d4f] + Krylov v0.9.10 [b964fa9f] + LaTeXStrings v1.4.0 [23fbe1c1] + Latexify v0.16.6 [73f95e8e] + LatticeRules v0.0.1 [10f19ff3] + LayoutPointers v0.1.17 [5078a376] + LazyArrays v2.6.1 [87fe0de2] + LineSearch v0.1.4 [d3d80556] + LineSearches v7.3.0 [7ed4a6bd] + LinearSolve v3.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [d8e11817] + MLStyle v0.4.17 [1914dd2f] + MacroTools v0.5.15 [d125e4d3] + ManualMemory v0.1.8 [bb5d69b7] + MaybeInplace v0.1.4 [e1d29d7a] + Missings v1.2.0 [961ee093] + ModelingToolkit v9.64.3 [2e0e35c7] + Moshi v0.3.5 [46d2c3a1] + MuladdMacro v0.2.4 [102ac46a] + MultivariatePolynomials v0.5.7 [d8a4904e] + MutableArithmetics v1.6.4 [d41bc354] + NLSolversBase v7.8.3 [77ba4419] + NaNMath v1.1.2 [8913a72c] + NonlinearSolve v4.4.0 [be0214bd] + NonlinearSolveBase v1.5.0 [5959db7a] + NonlinearSolveFirstOrder v1.3.0 [9a2c21bd] + NonlinearSolveQuasiNewton v1.2.0 [26075421] + NonlinearSolveSpectralMethods v1.1.0 [6fe1bfb0] + OffsetArrays v1.15.0 [429524aa] + Optim v1.11.0 [bac558e1] + OrderedCollections v1.8.0 [6ad6398a] + OrdinaryDiffEqBDF v1.2.0 [bbf590c4] + OrdinaryDiffEqCore v1.18.1 [4302a76b] + OrdinaryDiffEqDifferentiation v1.4.0 [127b3ac7] + OrdinaryDiffEqNonlinearSolve v1.5.0 [43230ef6] + OrdinaryDiffEqRosenbrock v1.6.0 [2d112036] + OrdinaryDiffEqSDIRK v1.2.0 [90014a1f] + PDMats v0.11.32 [48d54b35] + PEtab v3.6.0 [65ce6f38] + PackageExtensionCompat v1.0.2 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.1 [e409e4f3] + PoissonRandom v0.4.4 [f517fe37] + Polyester v0.7.16 [1d0040c9] + PolyesterWeave v0.2.2 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 [d236fae5] + PreallocationTools v0.4.25 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [27ebfcd6] + Primes v0.5.6 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [8a4e6c94] + QuasiMonteCarlo v0.3.3 [74087812] + Random123 v1.7.0 [e6cf234a] + RandomNumbers v1.6.0 [b4db0fb7] + ReactionNetworkImporters v0.15.1 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.31.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [ae5879a3] + ResettableStacks v1.1.1 [37e2e3b7] + ReverseDiff v1.15.3 [79098fc4] + Rmath v0.8.0 [7e49a35a] + RuntimeGeneratedFunctions v0.5.13 [e5567a89] + SBML v1.6.0 [210efffb] + SBMLImporter v2.8.1 [9dfe8606] + SCCNonlinearSolve v1.0.0 [94e857df] + SIMDTypes v0.1.0 [0bca4576] + SciMLBase v2.75.1 [19f34311] + SciMLJacobianOperators v0.1.1 [c0aeaf25] + SciMLOperators v0.3.12 [53ae85a6] + SciMLStructures v1.6.1 [91c51154] + SentinelArrays v1.4.8 [efcf1570] + Setfield v1.1.2 [727e6d20] + SimpleNonlinearSolve v2.1.0 [699a6c99] + SimpleTraits v0.9.4 [ce78b400] + SimpleUnPack v1.1.0 [ed01d8cd] + Sobol v1.5.0 [a2af1166] + SortingAlgorithms v1.2.1 [47a9eef4] + SparseDiffTools v2.23.1 [0a514795] + SparseMatrixColorings v0.4.13 [276daf66] + SpecialFunctions v2.5.0 [aedffcd0] + Static v1.1.1 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [4c63d2b9] + StatsFuns v1.3.2 [7792a7ef] + StrideArraysCore v0.5.7 [69024149] + StringEncodings v0.3.7 [892a3eda] + StringManipulation v0.4.1 [c3572dad] + Sundials v4.26.1 [2efcf032] + SymbolicIndexingInterface v0.3.38 [19f23fe9] + SymbolicLimits v0.2.2 [d1185830] + SymbolicUtils v3.16.0 [0c5d862f] + Symbolics v6.29.2 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [8ea1fca8] + TermInterface v2.0.0 [1c621080] + TestItems v1.0.0 [8290d209] + ThreadingUtilities v0.5.2 [a759f4b9] + TimerOutputs v0.5.28 [0796e94c] + Tokenize v0.5.29 [3bb67fe8] + TranscodingStreams v0.11.3 [410a4b4d] + Tricks v0.1.10 [781d530d] + TruncatedStacktraces v1.4.0 [5c2747f8] + URIs v1.5.1 [3a884ed6] + UnPack v1.0.2 [1986cc42] + Unitful v1.22.0 [a7c27f48] + Unityper v0.1.6 [19fa3120] + VertexSafeGraphs v0.2.0 [ea10d353] + WeakRefStrings v1.4.2 [897b6980] + WeakValueDicts v0.1.0 [76eceee3] + WorkerUtilities v1.6.1 [ddb6d928] + YAML v0.4.13 [1d5cc7b8] + IntelOpenMP_jll v2025.0.4+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [856f044c] + MKL_jll v2025.0.1+1 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [bb12108a] + SBML_jll v5.20.1+0 ⌅ [fb77eaff] + Sundials_jll v5.2.3+0 [02c8fc9c] + XML2_jll v2.13.6+1 [1317d2d5] + oneTBB_jll v2022.0.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.11.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2024.12.31 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 14.32s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml` No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml` Precompiling package dependencies... Precompiling packages... 1158.7 ms ✓ Combinatorics 489.3 ms ✓ SimpleUnPack 839.3 ms ✓ FunctionWrappers 485.3 ms ✓ MuladdMacro 479.8 ms ✓ ConcreteStructs 496.5 ms ✓ LaTeXStrings 589.7 ms ✓ PositiveFactorizations 501.0 ms ✓ Glob 524.8 ms ✓ ExprTools 461.5 ms ✓ IteratorInterfaceExtensions 519.4 ms ✓ Tricks 553.0 ms ✓ WorkerUtilities 537.2 ms ✓ StatsAPI 721.8 ms ✓ ADTypes 500.8 ms ✓ CEnum 2584.6 ms ✓ ExproniconLite 890.2 ms ✓ OffsetArrays 648.2 ms ✓ LatticeRules 1302.7 ms ✓ Format 467.6 ms ✓ UnPack 2325.5 ms ✓ FillArrays 501.1 ms ✓ IntegerMathUtils 528.4 ms ✓ InverseFunctions 681.0 ms ✓ Statistics 460.9 ms ✓ CommonSolve 2312.8 ms ✓ MacroTools 969.3 ms ✓ RandomNumbers 510.6 ms ✓ ManualMemory 519.4 ms ✓ CompositeTypes 585.2 ms ✓ PoissonRandom 685.5 ms ✓ OrderedCollections 653.1 ms ✓ Requires 459.1 ms ✓ DataValueInterfaces 488.0 ms ✓ EnumX 472.2 ms ✓ Reexport 461.3 ms ✓ SIMDTypes 1859.1 ms ✓ Tokenize 927.3 ms ✓ InlineStrings 685.3 ms ✓ AbstractTrees 497.2 ms ✓ WeakValueDicts 1209.3 ms ✓ IrrationalConstants 614.8 ms ✓ IntervalSets 663.3 ms ✓ URIs 486.2 ms ✓ CompositionsBase 457.5 ms ✓ TestItems 472.5 ms ✓ PtrArrays 643.6 ms ✓ TranscodingStreams 461.4 ms ✓ FastPower 616.8 ms ✓ NaNMath 613.1 ms ✓ DelimitedFiles 507.3 ms ✓ InvertedIndices 13441.7 ms ✓ MLStyle 582.5 ms ✓ Inflate 692.3 ms ✓ EnzymeCore 454.6 ms ✓ IfElse 565.6 ms ✓ ConstructionBase 521.3 ms ✓ CommonWorldInvalidations 518.3 ms ✓ DataAPI 457.3 ms ✓ PackageExtensionCompat 1085.9 ms ✓ Crayons 474.0 ms ✓ FastClosures 485.3 ms ✓ TermInterface 532.6 ms ✓ StaticArraysCore 481.7 ms ✓ FindFirstFunctions 485.1 ms ✓ Bijections 748.4 ms ✓ SuiteSparse 10853.3 ms ✓ Krylov 2161.2 ms ✓ SentinelArrays 18798.2 ms ✓ Unitful 2157.6 ms ✓ CpuId 717.9 ms ✓ Preferences 662.4 ms ✓ Compat 765.5 ms ✓ DocStringExtensions 5674.2 ms ✓ MutableArithmetics 531.8 ms ✓ FunctionWrappersWrappers 579.8 ms ✓ RuntimeGeneratedFunctions 1644.9 ms ✓ TimerOutputs 517.7 ms ✓ TableTraits 1215.6 ms ✓ DifferentiationInterface 1741.7 ms ✓ Jieko 14029.8 ms ✓ ArrayLayouts 2523.1 ms ✓ FillArrays → FillArraysSparseArraysExt 709.9 ms ✓ Primes 1041.5 ms ✓ InverseFunctions → InverseFunctionsTestExt 603.9 ms ✓ InverseFunctions → InverseFunctionsDatesExt 791.2 ms ✓ Statistics → SparseArraysExt 608.2 ms ✓ FillArrays → FillArraysStatisticsExt 835.1 ms ✓ CommonSubexpressions 2120.9 ms ✓ SimpleTraits 1113.0 ms ✓ Random123 992.3 ms ✓ ThreadingUtilities 624.2 ms ✓ Parameters 576.0 ms ✓ Adapt 3519.9 ms ✓ Latexify 3200.9 ms ✓ CSTParser 560.9 ms ✓ IntervalSets → IntervalSetsRandomExt 561.8 ms ✓ IntervalSets → IntervalSetsStatisticsExt 554.3 ms ✓ CompositionsBase → CompositionsBaseInverseFunctionsExt 605.7 ms ✓ AliasTables 605.5 ms ✓ CodecZlib 1402.8 ms ✓ Sobol 11243.9 ms ✓ Expronicon 560.5 ms ✓ ADTypes → ADTypesEnzymeCoreExt 565.3 ms ✓ ConstructionBase → ConstructionBaseIntervalSetsExt 557.3 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 560.8 ms ✓ ADTypes → ADTypesConstructionBaseExt 641.2 ms ✓ PooledArrays 591.1 ms ✓ Missings 567.4 ms ✓ DiffResults 1005.0 ms ✓ PDMats 1279.7 ms ✓ Unitful → ConstructionBaseUnitfulExt 1282.4 ms ✓ Unitful → InverseFunctionsUnitfulExt 665.1 ms ✓ JLLWrappers 592.0 ms ✓ PrecompileTools 1809.8 ms ✓ DispatchDoctor 1195.4 ms ✓ TruncatedStacktraces 563.7 ms ✓ Compat → CompatLinearAlgebraExt 756.6 ms ✓ LogExpFunctions 1057.5 ms ✓ Tables 793.4 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 8430.6 ms ✓ Moshi 3728.3 ms ✓ BlockArrays 1999.2 ms ✓ ArrayLayouts → ArrayLayoutsSparseArraysExt 773.9 ms ✓ Adapt → AdaptSparseArraysExt 689.2 ms ✓ ArrayInterface 642.6 ms ✓ GPUArraysCore 574.3 ms ✓ OffsetArrays → OffsetArraysAdaptExt 553.1 ms ✓ EnzymeCore → AdaptExt 1506.6 ms ✓ Latexify → SparseArraysExt 717.0 ms ✓ Unityper 1528.6 ms ✓ Setfield 2635.1 ms ✓ Accessors 850.0 ms ✓ FillArrays → FillArraysPDMatsExt 733.8 ms ✓ Rmath_jll 3196.0 ms ✓ IntelOpenMP_jll 742.6 ms ✓ oneTBB_jll 790.4 ms ✓ Sundials_jll 740.2 ms ✓ Libiconv_jll 739.8 ms ✓ OpenSpecFun_jll 8196.1 ms ✓ StaticArrays 1571.2 ms ✓ RecipesBase 1712.5 ms ✓ StringManipulation 14394.7 ms ✓ Parsers 5545.7 ms ✓ Static 7220.8 ms ✓ CommonMark 5650.6 ms ✓ DynamicQuantities 631.6 ms ✓ DispatchDoctor → DispatchDoctorEnzymeCoreExt 3454.0 ms ✓ DataStructures 1252.3 ms ✓ FilePathsBase 1570.3 ms ✓ ChainRulesCore 771.2 ms ✓ Functors 588.9 ms ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 4191.6 ms ✓ LazyArrays 1013.4 ms ✓ MaybeInplace 768.0 ms ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 531.4 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 530.6 ms ✓ SciMLStructures 539.6 ms ✓ ArrayInterface → ArrayInterfaceGPUArraysCoreExt 1165.9 ms ✓ Accessors → LinearAlgebraExt 1102.8 ms ✓ Accessors → TestExt 1193.5 ms ✓ Accessors → IntervalSetsExt 1478.7 ms ✓ Accessors → UnitfulExt 1057.9 ms ✓ Rmath 5010.2 ms ✓ MKL_jll 774.6 ms ✓ StringEncodings 860.8 ms ✓ XML2_jll 2941.0 ms ✓ SpecialFunctions 2136.1 ms ✓ ArnoldiMethod 912.2 ms ✓ ResettableStacks 937.2 ms ✓ StaticArrays → StaticArraysStatisticsExt 3020.3 ms ✓ DomainSets 939.2 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 933.3 ms ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 927.4 ms ✓ Adapt → AdaptStaticArraysExt 1016.7 ms ✓ Accessors → StaticArraysExt 828.8 ms ✓ IntervalSets → IntervalSetsRecipesBaseExt 15700.8 ms ✓ PrettyTables 816.6 ms ✓ InlineStrings → ParsersExt 620.1 ms ✓ BitTwiddlingConvenienceFunctions 2581.6 ms ✓ CPUSummary 9303.8 ms ✓ StaticArrayInterface 2292.7 ms ✓ DynamicQuantities → DynamicQuantitiesUnitfulExt 1041.1 ms ✓ DynamicQuantities → DynamicQuantitiesLinearAlgebraExt 1266.6 ms ✓ SortingAlgorithms 1951.1 ms ✓ QuadGK 2122.0 ms ✓ SparseMatrixColorings 24511.9 ms ✓ JuliaFormatter 771.8 ms ✓ FilePathsBase → FilePathsBaseMmapExt 1819.3 ms ✓ FilePathsBase → FilePathsBaseTestExt 859.3 ms ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 644.6 ms ✓ ADTypes → ADTypesChainRulesCoreExt 651.5 ms ✓ DifferentiationInterface → DifferentiationInterfaceChainRulesCoreExt 939.4 ms ✓ DispatchDoctor → DispatchDoctorChainRulesCoreExt 1757.4 ms ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 622.7 ms ✓ ArrayInterface → ArrayInterfaceChainRulesCoreExt 1001.6 ms ✓ StaticArrays → StaticArraysChainRulesCoreExt 1801.6 ms ✓ LazyArrays → LazyArraysStaticArraysExt 2364.3 ms ✓ LazyArrays → LazyArraysBlockArraysExt 809.2 ms ✓ MaybeInplace → MaybeInplaceSparseArraysExt 789.8 ms ✓ FiniteDiff 2398.3 ms ✓ SciMLOperators 1910.7 ms ✓ SymbolicIndexingInterface 1537.6 ms ✓ YAML 847.6 ms ✓ SBML_jll 2358.2 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 1423.3 ms ✓ HypergeometricFunctions 852.5 ms ✓ DiffRules 7193.9 ms ✓ Graphs 1360.4 ms ✓ WeakRefStrings 2597.7 ms ✓ PolyesterWeave 1889.5 ms ✓ StaticArrayInterface → StaticArrayInterfaceStaticArraysExt 1566.0 ms ✓ StaticArrayInterface → StaticArrayInterfaceOffsetArraysExt 1971.1 ms ✓ CloseOpenIntervals 1804.9 ms ✓ LayoutPointers 3981.1 ms ✓ StatsBase 44709.7 ms ✓ DataFrames 1297.2 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseMatrixColoringsExt 6334.5 ms ✓ MultivariatePolynomials 769.4 ms ✓ FiniteDiff → FiniteDiffSparseArraysExt 916.0 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 636.5 ms ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt 751.3 ms ✓ SciMLOperators → SciMLOperatorsStaticArraysCoreExt 994.0 ms ✓ SciMLOperators → SciMLOperatorsSparseArraysExt 2251.4 ms ✓ RecursiveArrayTools 9593.6 ms ✓ SBML 1705.1 ms ✓ StatsFuns 5722.3 ms ✓ ForwardDiff 2018.7 ms ✓ VertexSafeGraphs 15822.5 ms ✓ CSV 2323.4 ms ✓ StrideArraysCore 3234.7 ms ✓ QuasiMonteCarlo 4431.6 ms ✓ Latexify → DataFramesExt 4147.8 ms ✓ DynamicPolynomials 1055.0 ms ✓ RecursiveArrayTools → RecursiveArrayToolsSparseArraysExt 16310.3 ms ✓ SciMLBase 814.8 ms ✓ StatsFuns → StatsFunsInverseFunctionsExt 2012.7 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 8690.7 ms ✓ Distributions 2336.9 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 1915.6 ms ✓ FastPower → FastPowerForwardDiffExt 1189.9 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 2324.7 ms ✓ PreallocationTools 3097.9 ms ✓ ComponentArrays 2592.1 ms ✓ NLSolversBase 1187.3 ms ✓ RecursiveArrayTools → RecursiveArrayToolsForwardDiffExt 1769.8 ms ✓ Polyester 29177.0 ms ✓ SymbolicUtils 2324.3 ms ✓ SciMLBase → SciMLBaseMLStyleExt 1881.5 ms ✓ SciMLBase → SciMLBaseChainRulesCoreExt 1774.3 ms ✓ SCCNonlinearSolve 4699.2 ms ✓ SciMLJacobianOperators 2334.3 ms ✓ Distributions → DistributionsTestExt 2283.6 ms ✓ Distributions → DistributionsChainRulesCoreExt 2314.1 ms ✓ QuasiMonteCarlo → QuasiMonteCarloDistributionsExt 21921.0 ms ✓ ReverseDiff 5025.0 ms ✓ SparseDiffTools 1241.2 ms ✓ ComponentArrays → ComponentArraysRecursiveArrayToolsExt 2040.1 ms ✓ ComponentArrays → ComponentArraysSciMLBaseExt 3617.3 ms ✓ LineSearches 1883.7 ms ✓ FastBroadcast 5037.7 ms ✓ SymbolicLimits 11648.6 ms ✓ LinearSolve 6026.0 ms ✓ LineSearch 9058.7 ms ✓ NonlinearSolveBase 4815.4 ms ✓ FastPower → FastPowerReverseDiffExt 4983.7 ms ✓ DifferentiationInterface → DifferentiationInterfaceReverseDiffExt 4794.1 ms ✓ ArrayInterface → ArrayInterfaceReverseDiffExt 4787.6 ms ✓ PreallocationTools → PreallocationToolsReverseDiffExt 6022.4 ms ✓ ComponentArrays → ComponentArraysReverseDiffExt 8255.2 ms ✓ SymbolicUtils → SymbolicUtilsReverseDiffExt 2679.7 ms ✓ SparseDiffTools → SparseDiffToolsPolyesterExt 6427.2 ms ✓ Optim 1683.1 ms ✓ RecursiveArrayTools → RecursiveArrayToolsFastBroadcastExt 32462.6 ms ✓ Symbolics 2781.6 ms ✓ LinearSolve → LinearSolveEnzymeExt 5148.2 ms ✓ LinearSolve → LinearSolveSparseArraysExt 2153.1 ms ✓ LineSearch → LineSearchLineSearchesExt 2174.2 ms ✓ NonlinearSolveBase → NonlinearSolveBaseSparseMatrixColoringsExt 3358.4 ms ✓ NonlinearSolveBase → NonlinearSolveBaseForwardDiffExt 2080.9 ms ✓ NonlinearSolveBase → NonlinearSolveBaseSparseArraysExt 1819.9 ms ✓ NonlinearSolveBase → NonlinearSolveBaseLineSearchExt 2876.5 ms ✓ NonlinearSolveBase → NonlinearSolveBaseLinearSolveExt 5030.0 ms ✓ BracketingNonlinearSolve 8408.5 ms ✓ DiffEqBase 7518.5 ms ✓ Symbolics → SymbolicsForwardDiffExt 6059.8 ms ✓ DifferentiationInterface → DifferentiationInterfaceSymbolicsExt 6222.4 ms ✓ SparseDiffTools → SparseDiffToolsSymbolicsExt 2194.5 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveForwardDiffExt 2577.5 ms ✓ DiffEqBase → DiffEqBaseChainRulesCoreExt 3046.7 ms ✓ DiffEqBase → DiffEqBaseUnitfulExt 8267.4 ms ✓ DiffEqBase → DiffEqBaseReverseDiffExt 3882.6 ms ✓ DiffEqBase → DiffEqBaseForwardDiffExt 3052.8 ms ✓ DiffEqBase → DiffEqBaseDistributionsExt 2480.4 ms ✓ DiffEqBase → DiffEqBaseSparseArraysExt 5878.8 ms ✓ DiffEqCallbacks 6818.4 ms ✓ OrdinaryDiffEqCore 2279.9 ms ✓ NonlinearSolveBase → NonlinearSolveBaseDiffEqBaseExt 6079.3 ms ✓ Symbolics → SymbolicsPreallocationToolsExt 12322.8 ms ✓ SimpleNonlinearSolve 13820.6 ms ✓ Sundials 5278.1 ms ✓ JumpProcesses 6002.9 ms ✓ DiffEqNoiseProcess 2469.8 ms ✓ OrdinaryDiffEqCore → OrdinaryDiffEqCoreEnzymeCoreExt 9048.4 ms ✓ NonlinearSolveSpectralMethods 14534.2 ms ✓ NonlinearSolveQuasiNewton 24794.3 ms ✓ NonlinearSolveFirstOrder 8324.4 ms ✓ SimpleNonlinearSolve → SimpleNonlinearSolveReverseDiffExt 2820.3 ms ✓ SimpleNonlinearSolve → SimpleNonlinearSolveDiffEqBaseExt 2441.7 ms ✓ SimpleNonlinearSolve → SimpleNonlinearSolveChainRulesCoreExt 8185.3 ms ✓ DiffEqNoiseProcess → DiffEqNoiseProcessReverseDiffExt 6087.7 ms ✓ OrdinaryDiffEqDifferentiation 2776.3 ms ✓ NonlinearSolveSpectralMethods → NonlinearSolveSpectralMethodsForwardDiffExt 3937.1 ms ✓ NonlinearSolveQuasiNewton → NonlinearSolveQuasiNewtonForwardDiffExt 23505.8 ms ✓ OrdinaryDiffEqRosenbrock 18683.2 ms ✓ NonlinearSolve 5733.9 ms ✓ NonlinearSolve → NonlinearSolveSundialsExt 8527.7 ms ✓ OrdinaryDiffEqNonlinearSolve 146284.8 ms ✓ ModelingToolkit 9290.2 ms ✓ OrdinaryDiffEqSDIRK 19644.0 ms ✓ ModelingToolkit → MTKChainRulesCoreExt 18710.6 ms ✓ OrdinaryDiffEqBDF 38806.2 ms ✓ Catalyst 20450.4 ms ✓ ReactionNetworkImporters ✗ SBMLImporter ✗ SBMLImporter → SBMLImporterForwardDiffExt ✗ PEtab ✗ PEtab → PEtabOptimExtension 323 dependencies successfully precompiled in 1568 seconds. 37 already precompiled. 8 dependencies had output during precompilation: ┌ Bijections │ WARNING: Constructor for type "Dict" was extended in `Bijections` without explicit qualification or import. │ NOTE: Assumed "Dict" refers to `Base.Dict`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Dict end`. │ Hint: To silence the warning, qualify `Dict` as `Base.Dict` in the method signature or explicitly `import Base: Dict`. └ ┌ DynamicQuantities │ WARNING: Constructor for type "Rational" was extended in `DynamicQuantities` without explicit qualification or import. │ NOTE: Assumed "Rational" refers to `Base.Rational`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Rational end`. │ Hint: To silence the warning, qualify `Rational` as `Base.Rational` in the method signature or explicitly `import Base: Rational`. │ WARNING: Constructor for type "Bool" was extended in `DynamicQuantities` without explicit qualification or import. │ NOTE: Assumed "Bool" refers to `Base.Bool`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Bool end`. │ Hint: To silence the warning, qualify `Bool` as `Base.Bool` in the method signature or explicitly `import Base: Bool`. │ WARNING: Constructor for type "Complex" was extended in `DynamicQuantities` without explicit qualification or import. │ NOTE: Assumed "Complex" refers to `Base.Complex`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Complex end`. │ Hint: To silence the warning, qualify `Complex` as `Base.Complex` in the method signature or explicitly `import Base: Complex`. └ ┌ ModelingToolkit │ WARNING: Detected access to binding `ModelingToolkit.SystemStructure` in a world prior to its definition world. │ Julia 1.12 has introduced more strict world age semantics for global bindings. │ !!! This code may malfunction under Revise. │ !!! This code will error in future versions of Julia. │ Hint: Add an appropriate `invokelatest` around the access to this binding. │ WARNING: Detected access to binding `ModelingToolkit.SparseMatrixCLIL` in a world prior to its definition world. │ Julia 1.12 has introduced more strict world age semantics for global bindings. │ !!! This code may malfunction under Revise. │ !!! This code will error in future versions of Julia. │ Hint: Add an appropriate `invokelatest` around the access to this binding. │ WARNING: Detected access to binding `BipartiteGraphs.BipartiteGraph` in a world prior to its definition world. │ Julia 1.12 has introduced more strict world age semantics for global bindings. │ !!! This code may malfunction under Revise. │ !!! This code will error in future versions of Julia. │ Hint: Add an appropriate `invokelatest` around the access to this binding. │ WARNING: Detected access to binding `ModelingToolkit.ODESystem` in a world prior to its definition world. │ Julia 1.12 has introduced more strict world age semantics for global bindings. │ !!! This code may malfunction under Revise. │ !!! This code will error in future versions of Julia. │ Hint: Add an appropriate `invokelatest` around the access to this binding. │ WARNING: Detected access to binding `ModelingToolkit.TearingState` in a world prior to its definition world. │ Julia 1.12 has introduced more strict world age semantics for global bindings. │ !!! This code may malfunction under Revise. │ !!! This code will error in future versions of Julia. │ Hint: Add an appropriate `invokelatest` around the access to this binding. │ WARNING: Detected access to binding `ModelingToolkit.ClockInference` in a world prior to its definition world. │ Julia 1.12 has introduced more strict world age semantics for global bindings. │ !!! This code may malfunction under Revise. │ !!! This code will error in future versions of Julia. │ Hint: Add an appropriate `invokelatest` around the access to this binding. │ WARNING: Detected access to binding `ModelingToolkit.NonlinearSystem` in a world prior to its definition world. │ Julia 1.12 has introduced more strict world age semantics for global bindings. │ !!! This code may malfunction under Revise. │ !!! This code will error in future versions of Julia. │ Hint: Add an appropriate `invokelatest` around the access to this binding. │ WARNING: Detected access to binding `ModelingToolkit.InitializationSystemMetadata` in a world prior to its definition world. │ Julia 1.12 has introduced more strict world age semantics for global bindings. │ !!! This code may malfunction under Revise. │ !!! This code will error in future versions of Julia. │ Hint: Add an appropriate `invokelatest` around the access to this binding. └ ┌ NonlinearSolveFirstOrder │ WARNING: Detected access to binding `NonlinearSolveFirstOrder.GeneralizedFirstOrderAlgorithm` in a world prior to its definition world. │ Julia 1.12 has introduced more strict world age semantics for global bindings. │ !!! This code may malfunction under Revise. │ !!! This code will error in future versions of Julia. │ Hint: Add an appropriate `invokelatest` around the access to this binding. └ ┌ MKL_jll │ Downloading artifact: IntelOpenMP └ ┌ Random123 │ WARNING: Constructor for type "UInt128" was extended in `Random123` without explicit qualification or import. │ NOTE: Assumed "UInt128" refers to `Base.UInt128`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function UInt128 end`. │ Hint: To silence the warning, qualify `UInt128` as `Base.UInt128` in the method signature or explicitly `import Base: UInt128`. └ ┌ SimpleNonlinearSolve │ WARNING: Detected access to binding `SimpleNonlinearSolve.SimpleNewtonRaphson` in a world prior to its definition world. │ Julia 1.12 has introduced more strict world age semantics for global bindings. │ !!! This code may malfunction under Revise. │ !!! This code will error in future versions of Julia. │ Hint: Add an appropriate `invokelatest` around the access to this binding. └ ┌ IntervalSets │ WARNING: Constructor for type "UnitRange" was extended in `IntervalSets` without explicit qualification or import. │ NOTE: Assumed "UnitRange" refers to `Base.UnitRange`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function UnitRange end`. │ Hint: To silence the warning, qualify `UnitRange` as `Base.UnitRange` in the method signature or explicitly `import Base: UnitRange`. └ ERROR: LoadError: The following 2 direct dependencies failed to precompile: PEtabOptimExtension Failed to precompile PEtabOptimExtension [05cf626d-b296-5c22-b665-ff5d035efd1d] to "/home/pkgeval/.julia/compiled/v1.13/PEtabOptimExtension/jl_CMBYPd" (ProcessExited(1)). ERROR: LoadError: UndefVarError: `t` not defined in `SBMLImporter` Stacktrace: [1] _get_reaction_system(model_SBML_sys::SBMLImporter.ModelSBMLSystem, model_SBML::SBMLImporter.ModelSBML) @ SBMLImporter ~/.julia/packages/SBMLImporter/ThIqg/src/system.jl:43 [2] load_SBML(path::String; massaction::Bool, complete::Bool, ifelse_to_callback::Bool, write_to_file::Bool, inline_assignment_rules::Bool, inline_kineticlaw_parameters::Bool, model_as_string::Bool) @ SBMLImporter ~/.julia/packages/SBMLImporter/ThIqg/src/load.jl:84 [3] load_SBML(path::String) @ SBMLImporter ~/.julia/packages/SBMLImporter/ThIqg/src/load.jl:74 [4] macro expansion @ ~/.julia/packages/SBMLImporter/ThIqg/src/SBMLImporter.jl:52 [inlined] [5] macro expansion @ ~/.julia/packages/PrecompileTools/L8A3n/src/workloads.jl:140 [inlined] [6] top-level scope @ ~/.julia/packages/SBMLImporter/ThIqg/src/SBMLImporter.jl:48 [7] include(mod::Module, _path::String) @ Base ./Base.jl:306 [8] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3004 [9] top-level scope @ stdin:6 [10] eval(m::Module, e::Any) @ Core ./boot.jl:488 [11] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2855 [12] include_string @ ./loading.jl:2865 [inlined] [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [14] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/SBMLImporter/ThIqg/src/SBMLImporter.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile SBMLImporter [210efffb-c3c8-456d-a807-6f55560b12fe] to "/home/pkgeval/.julia/compiled/v1.13/SBMLImporter/jl_DMRa84" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3291 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2682 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1280 [8] #invokelatest_gr#229 @ ./reflection.jl:1288 [inlined] [9] invokelatest_gr @ ./reflection.jl:1282 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3862 [11] maybe_cachefile_lock @ ./loading.jl:3859 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2668 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2493 [14] macro expansion @ ./loading.jl:2421 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2386 [17] #invoke_in_world#2 @ ./essentials.jl:1125 [inlined] [18] invoke_in_world @ ./essentials.jl:1121 [inlined] [19] require(into::Module, mod::Symbol) @ Base ./loading.jl:2366 [20] top-level scope @ ~/.julia/packages/PEtab/o9c3R/src/PEtab.jl:16 [21] include(mod::Module, _path::String) @ Base ./Base.jl:306 [22] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3004 [23] top-level scope @ stdin:6 [24] eval(m::Module, e::Any) @ Core ./boot.jl:488 [25] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2855 [26] include_string @ ./loading.jl:2865 [inlined] [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [28] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/PEtab/o9c3R/src/PEtab.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile PEtab [48d54b35-e43e-4a66-a5a1-dde6b987cf69] to "/home/pkgeval/.julia/compiled/v1.13/PEtab/jl_woK8fF" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3291 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2682 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1280 [8] #invokelatest_gr#229 @ ./reflection.jl:1288 [inlined] [9] invokelatest_gr @ ./reflection.jl:1282 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3862 [11] maybe_cachefile_lock @ ./loading.jl:3859 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2668 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2493 [14] macro expansion @ ./loading.jl:2421 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2386 [17] #invoke_in_world#2 @ ./essentials.jl:1125 [inlined] [18] invoke_in_world @ ./essentials.jl:1121 [inlined] [19] require(into::Module, mod::Symbol) @ Base ./loading.jl:2366 [20] top-level scope @ ~/.julia/packages/PEtab/o9c3R/ext/PEtabOptimExtension.jl:9 [21] include(mod::Module, _path::String) @ Base ./Base.jl:306 [22] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3004 [23] top-level scope @ stdin:6 [24] eval(m::Module, e::Any) @ Core ./boot.jl:488 [25] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2855 [26] include_string @ ./loading.jl:2865 [inlined] [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [28] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/PEtab/o9c3R/ext/PEtabOptimExtension.jl:1 in expression starting at stdin:6 PEtab Failed to precompile PEtab [48d54b35-e43e-4a66-a5a1-dde6b987cf69] to "/home/pkgeval/.julia/compiled/v1.13/PEtab/jl_AOTDTG" (ProcessExited(1)). ERROR: LoadError: UndefVarError: `t` not defined in `SBMLImporter` Stacktrace: [1] _get_reaction_system(model_SBML_sys::SBMLImporter.ModelSBMLSystem, model_SBML::SBMLImporter.ModelSBML) @ SBMLImporter ~/.julia/packages/SBMLImporter/ThIqg/src/system.jl:43 [2] load_SBML(path::String; massaction::Bool, complete::Bool, ifelse_to_callback::Bool, write_to_file::Bool, inline_assignment_rules::Bool, inline_kineticlaw_parameters::Bool, model_as_string::Bool) @ SBMLImporter ~/.julia/packages/SBMLImporter/ThIqg/src/load.jl:84 [3] load_SBML(path::String) @ SBMLImporter ~/.julia/packages/SBMLImporter/ThIqg/src/load.jl:74 [4] macro expansion @ ~/.julia/packages/SBMLImporter/ThIqg/src/SBMLImporter.jl:52 [inlined] [5] macro expansion @ ~/.julia/packages/PrecompileTools/L8A3n/src/workloads.jl:140 [inlined] [6] top-level scope @ ~/.julia/packages/SBMLImporter/ThIqg/src/SBMLImporter.jl:48 [7] include(mod::Module, _path::String) @ Base ./Base.jl:306 [8] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3004 [9] top-level scope @ stdin:6 [10] eval(m::Module, e::Any) @ Core ./boot.jl:488 [11] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2855 [12] include_string @ ./loading.jl:2865 [inlined] [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [14] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/SBMLImporter/ThIqg/src/SBMLImporter.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile SBMLImporter [210efffb-c3c8-456d-a807-6f55560b12fe] to "/home/pkgeval/.julia/compiled/v1.13/SBMLImporter/jl_F0DsFZ" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3291 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2682 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1280 [8] #invokelatest_gr#229 @ ./reflection.jl:1288 [inlined] [9] invokelatest_gr @ ./reflection.jl:1282 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3862 [11] maybe_cachefile_lock @ ./loading.jl:3859 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2668 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2493 [14] macro expansion @ ./loading.jl:2421 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2386 [17] #invoke_in_world#2 @ ./essentials.jl:1125 [inlined] [18] invoke_in_world @ ./essentials.jl:1121 [inlined] [19] require(into::Module, mod::Symbol) @ Base ./loading.jl:2366 [20] top-level scope @ ~/.julia/packages/PEtab/o9c3R/src/PEtab.jl:16 [21] include(mod::Module, _path::String) @ Base ./Base.jl:306 [22] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3004 [23] top-level scope @ stdin:6 [24] eval(m::Module, e::Any) @ Core ./boot.jl:488 [25] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2855 [26] include_string @ ./loading.jl:2865 [inlined] [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [28] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/PEtab/o9c3R/src/PEtab.jl:1 in expression starting at stdin:6 in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 1573.43s ################################################################################ # Loading # Loading PEtab... Precompiling packages... ✗ SBMLImporter ✗ SBMLImporter → SBMLImporterForwardDiffExt Info Given PEtab was explicitly requested, output will be shown live  ERROR: LoadError: UndefVarError: `t` not defined in `SBMLImporter` Stacktrace:  [1] _get_reaction_system(model_SBML_sys::SBMLImporter.ModelSBMLSystem, model_SBML::SBMLImporter.ModelSBML)  @ SBMLImporter ~/.julia/packages/SBMLImporter/ThIqg/src/system.jl:43  [2] load_SBML(path::String; massaction::Bool, complete::Bool, ifelse_to_callback::Bool, write_to_file::Bool, inline_assignment_rules::Bool, inline_kineticlaw_parameters::Bool, model_as_string::Bool)  @ SBMLImporter ~/.julia/packages/SBMLImporter/ThIqg/src/load.jl:84  [3] load_SBML(path::String)  @ SBMLImporter ~/.julia/packages/SBMLImporter/ThIqg/src/load.jl:74  [4] macro expansion  @ ~/.julia/packages/SBMLImporter/ThIqg/src/SBMLImporter.jl:52 [inlined]  [5] macro expansion  @ ~/.julia/packages/PrecompileTools/L8A3n/src/workloads.jl:140 [inlined]  [6] top-level scope  @ ~/.julia/packages/SBMLImporter/ThIqg/src/SBMLImporter.jl:48  [7] include(mod::Module, _path::String)  @ Base ./Base.jl:306  [8] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)  @ Base ./loading.jl:3004  [9] top-level scope  @ stdin:6  [10] eval(m::Module, e::Any)  @ Core ./boot.jl:488  [11] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2855  [12] include_string  @ ./loading.jl:2865 [inlined]  [13] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:326  [14] _start()  @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/SBMLImporter/ThIqg/src/SBMLImporter.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile SBMLImporter [210efffb-c3c8-456d-a807-6f55560b12fe] to "/home/pkgeval/.julia/compiled/v1.13/SBMLImporter/jl_AFWQkd" (ProcessExited(1)). Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)  @ Base ./loading.jl:3291  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()  @ Base ./loading.jl:2682  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93  [5] #mkpidlock#7  @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined]  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114  [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any})  @ Base ./reflection.jl:1280  [8] #invokelatest_gr#229  @ ./reflection.jl:1288 [inlined]  [9] invokelatest_gr  @ ./reflection.jl:1282 [inlined]  [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)  @ Base ./loading.jl:3862  [11] maybe_cachefile_lock  @ ./loading.jl:3859 [inlined]  [12] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2668  [13] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2493  [14] macro expansion  @ ./loading.jl:2421 [inlined]  [15] macro expansion  @ ./lock.jl:376 [inlined]  [16] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2386  [17] #invoke_in_world#2  @ ./essentials.jl:1125 [inlined]  [18] invoke_in_world  @ ./essentials.jl:1121 [inlined]  [19] require(into::Module, mod::Symbol)  @ Base ./loading.jl:2366  [20] top-level scope  @ ~/.julia/packages/PEtab/o9c3R/src/PEtab.jl:16  [21] include(mod::Module, _path::String)  @ Base ./Base.jl:306  [22] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3004  [23] top-level scope  @ stdin:6  [24] eval(m::Module, e::Any)  @ Core ./boot.jl:488  [25] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2855  [26] include_string  @ ./loading.jl:2865 [inlined]  [27] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:326  [28] _start()  @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/PEtab/o9c3R/src/PEtab.jl:1 in expression starting at stdin:6 ✗ PEtab ✗ PEtab → PEtabOptimExtension 0 dependencies successfully precompiled in 289 seconds. 360 already precompiled. ERROR: The following 2 direct dependencies failed to precompile: PEtabOptimExtension Failed to precompile PEtabOptimExtension [05cf626d-b296-5c22-b665-ff5d035efd1d] to "/home/pkgeval/.julia/compiled/v1.13/PEtabOptimExtension/jl_lMbHDl" (ProcessExited(1)). ERROR: LoadError: UndefVarError: `t` not defined in `SBMLImporter` Stacktrace: [1] _get_reaction_system(model_SBML_sys::SBMLImporter.ModelSBMLSystem, model_SBML::SBMLImporter.ModelSBML) @ SBMLImporter ~/.julia/packages/SBMLImporter/ThIqg/src/system.jl:43 [2] load_SBML(path::String; massaction::Bool, complete::Bool, ifelse_to_callback::Bool, write_to_file::Bool, inline_assignment_rules::Bool, inline_kineticlaw_parameters::Bool, model_as_string::Bool) @ SBMLImporter ~/.julia/packages/SBMLImporter/ThIqg/src/load.jl:84 [3] load_SBML(path::String) @ SBMLImporter ~/.julia/packages/SBMLImporter/ThIqg/src/load.jl:74 [4] macro expansion @ ~/.julia/packages/SBMLImporter/ThIqg/src/SBMLImporter.jl:52 [inlined] [5] macro expansion @ ~/.julia/packages/PrecompileTools/L8A3n/src/workloads.jl:140 [inlined] [6] top-level scope @ ~/.julia/packages/SBMLImporter/ThIqg/src/SBMLImporter.jl:48 [7] include(mod::Module, _path::String) @ Base ./Base.jl:306 [8] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3004 [9] top-level scope @ stdin:6 [10] eval(m::Module, e::Any) @ Core ./boot.jl:488 [11] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2855 [12] include_string @ ./loading.jl:2865 [inlined] [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [14] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/SBMLImporter/ThIqg/src/SBMLImporter.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile SBMLImporter [210efffb-c3c8-456d-a807-6f55560b12fe] to "/home/pkgeval/.julia/compiled/v1.13/SBMLImporter/jl_yJgUH4" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3291 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2682 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1280 [8] #invokelatest_gr#229 @ ./reflection.jl:1288 [inlined] [9] invokelatest_gr @ ./reflection.jl:1282 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3862 [11] maybe_cachefile_lock @ ./loading.jl:3859 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2668 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2493 [14] macro expansion @ ./loading.jl:2421 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2386 [17] #invoke_in_world#2 @ ./essentials.jl:1125 [inlined] [18] invoke_in_world @ ./essentials.jl:1121 [inlined] [19] require(into::Module, mod::Symbol) @ Base ./loading.jl:2366 [20] top-level scope @ ~/.julia/packages/PEtab/o9c3R/src/PEtab.jl:16 [21] include(mod::Module, _path::String) @ Base ./Base.jl:306 [22] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3004 [23] top-level scope @ stdin:6 [24] eval(m::Module, e::Any) @ Core ./boot.jl:488 [25] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2855 [26] include_string @ ./loading.jl:2865 [inlined] [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [28] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/PEtab/o9c3R/src/PEtab.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile PEtab [48d54b35-e43e-4a66-a5a1-dde6b987cf69] to "/home/pkgeval/.julia/compiled/v1.13/PEtab/jl_lQ9z5r" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3291 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2682 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1280 [8] #invokelatest_gr#229 @ ./reflection.jl:1288 [inlined] [9] invokelatest_gr @ ./reflection.jl:1282 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3862 [11] maybe_cachefile_lock @ ./loading.jl:3859 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2668 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2493 [14] macro expansion @ ./loading.jl:2421 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2386 [17] #invoke_in_world#2 @ ./essentials.jl:1125 [inlined] [18] invoke_in_world @ ./essentials.jl:1121 [inlined] [19] require(into::Module, mod::Symbol) @ Base ./loading.jl:2366 [20] top-level scope @ ~/.julia/packages/PEtab/o9c3R/ext/PEtabOptimExtension.jl:9 [21] include(mod::Module, _path::String) @ Base ./Base.jl:306 [22] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3004 [23] top-level scope @ stdin:6 [24] eval(m::Module, e::Any) @ Core ./boot.jl:488 [25] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2855 [26] include_string @ ./loading.jl:2865 [inlined] [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [28] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/PEtab/o9c3R/ext/PEtabOptimExtension.jl:1 in expression starting at stdin:6 PEtab Failed to precompile PEtab [48d54b35-e43e-4a66-a5a1-dde6b987cf69] to "/home/pkgeval/.julia/compiled/v1.13/PEtab/jl_1mtocm" (ProcessExited(1)). ERROR: LoadError: UndefVarError: `t` not defined in `SBMLImporter` Stacktrace: [1] _get_reaction_system(model_SBML_sys::SBMLImporter.ModelSBMLSystem, model_SBML::SBMLImporter.ModelSBML) @ SBMLImporter ~/.julia/packages/SBMLImporter/ThIqg/src/system.jl:43 [2] load_SBML(path::String; massaction::Bool, complete::Bool, ifelse_to_callback::Bool, write_to_file::Bool, inline_assignment_rules::Bool, inline_kineticlaw_parameters::Bool, model_as_string::Bool) @ SBMLImporter ~/.julia/packages/SBMLImporter/ThIqg/src/load.jl:84 [3] load_SBML(path::String) @ SBMLImporter ~/.julia/packages/SBMLImporter/ThIqg/src/load.jl:74 [4] macro expansion @ ~/.julia/packages/SBMLImporter/ThIqg/src/SBMLImporter.jl:52 [inlined] [5] macro expansion @ ~/.julia/packages/PrecompileTools/L8A3n/src/workloads.jl:140 [inlined] [6] top-level scope @ ~/.julia/packages/SBMLImporter/ThIqg/src/SBMLImporter.jl:48 [7] include(mod::Module, _path::String) @ Base ./Base.jl:306 [8] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3004 [9] top-level scope @ stdin:6 [10] eval(m::Module, e::Any) @ Core ./boot.jl:488 [11] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2855 [12] include_string @ ./loading.jl:2865 [inlined] [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [14] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/SBMLImporter/ThIqg/src/SBMLImporter.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile SBMLImporter [210efffb-c3c8-456d-a807-6f55560b12fe] to "/home/pkgeval/.julia/compiled/v1.13/SBMLImporter/jl_AFWQkd" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3291 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2682 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1280 [8] #invokelatest_gr#229 @ ./reflection.jl:1288 [inlined] [9] invokelatest_gr @ ./reflection.jl:1282 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3862 [11] maybe_cachefile_lock @ ./loading.jl:3859 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2668 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2493 [14] macro expansion @ ./loading.jl:2421 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2386 [17] #invoke_in_world#2 @ ./essentials.jl:1125 [inlined] [18] invoke_in_world @ ./essentials.jl:1121 [inlined] [19] require(into::Module, mod::Symbol) @ Base ./loading.jl:2366 [20] top-level scope @ ~/.julia/packages/PEtab/o9c3R/src/PEtab.jl:16 [21] include(mod::Module, _path::String) @ Base ./Base.jl:306 [22] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3004 [23] top-level scope @ stdin:6 [24] eval(m::Module, e::Any) @ Core ./boot.jl:488 [25] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2855 [26] include_string @ ./loading.jl:2865 [inlined] [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [28] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/PEtab/o9c3R/src/PEtab.jl:1 in expression starting at stdin:6 Loading failed after 290.12s ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so -g1 --check-bounds=yes --inline=yes --pkgimages=existing -e 'using PEtab'`, ProcessExited(1)) [1] Stacktrace: [1] pipeline_error @ ./process.jl:598 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:513 [3] run(::Cmd) @ Base ./process.jl:510 [4] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:193 [5] include(mod::Module, _path::String) @ Base ./Base.jl:306 [6] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [7] _start() @ Base ./client.jl:560 in expression starting at /PkgEval.jl/scripts/evaluate.jl:184 PkgEval failed after 1888.31s: package fails to precompile