Package evaluation of Nclusion on Julia 1.13.0-DEV.140 (fac1ce7906*) started at 2025-03-02T21:48:44.936 ################################################################################ # Set-up # Set-up completed after 0.25s ################################################################################ # Installation # Installing Nclusion... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [cef8bb50] + Nclusion v1.0.2 Updating `~/.julia/environments/v1.13/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.2.0 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.4.0 [7d9fca2a] + Arpack v0.5.4 [4fba245c] + ArrayInterface v7.18.0 [a9b6321e] + Atomix v1.1.1 [13072b0f] + AxisAlgorithms v1.1.0 [198e06fe] + BangBang v0.4.4 [9718e550] + Baselet v0.1.1 [6e4b80f9] + BenchmarkTools v1.6.0 [d1d4a3ce] + BitFlags v0.1.9 [e1450e63] + BufferedStreams v1.2.2 [fa961155] + CEnum v0.5.0 [336ed68f] + CSV v0.10.15 [082447d4] + ChainRules v1.72.3 [d360d2e6] + ChainRulesCore v1.25.1 [2fefd308] + ClusterValidityIndices v0.6.4 [aaaa29a8] + Clustering v0.15.8 [da1fd8a2] + CodeTracking v1.3.6 [944b1d66] + CodecZlib v0.7.8 [35d6a980] + ColorSchemes v3.29.0 ⌅ [3da002f7] + ColorTypes v0.11.5 ⌃ [c3611d14] + ColorVectorSpace v0.10.0 ⌅ [5ae59095] + Colors v0.12.11 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PCRE2_jll v10.44.0+1 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 13.06s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml` No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml` Precompiling package dependencies... Precompiling packages... 11539.7 ms ✓ PProf 240791.5 ms ? Nclusion 1 dependency successfully precompiled in 264 seconds. 432 already precompiled. 1 dependencies failed but may be precompilable after restarting julia 1 dependency had output during precompilation: ┌ Nclusion │ WARNING: Method definition adapt_structure(Any, OffsetArrays.OffsetArray{T, N, AA} where AA<:AbstractArray{T, N} where N where T) in module OffsetArraysAdaptExt at /home/pkgeval/.julia/packages/OffsetArrays/HLmxQ/ext/OffsetArraysAdaptExt.jl:9 overwritten in module OffsetArraysAdaptExt on the same line (check for duplicate calls to `include`). │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ Precompilation completed after 276.92s ################################################################################ # Loading # Loading Nclusion... Precompiling packages... Info Given Nclusion was explicitly requested, output will be shown live  WARNING: Constructor for type "Variable" was extended in `Zygote` without explicit qualification or import.  NOTE: Assumed "Variable" refers to `IRTools.Variable`. This behavior is deprecated and may differ in future versions.  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function Variable end`.  Hint: To silence the warning, qualify `Variable` as `IRTools.Variable` in the method signature or explicitly `import IRTools: Variable`. Base.IOError("could not spawn `gnuplot --version`: no such file or directory (ENOENT)", -2) ┌ Warning: Enabling dry sessions └ @ Gnuplot ~/.julia/packages/Gnuplot/lL0gK/src/Gnuplot.jl:86 ERROR: LoadError: KeyError: key "PWD" not found Stacktrace:  [1] (::Base.var"#getindex##11#getindex##12")(k::String)  @ Base ./env.jl:164  [2] access_env(onError::Base.var"#getindex##11#getindex##12", var::String)  @ Base ./env.jl:60  [3] getindex(::Base.EnvDict, k::String)  @ Base ./env.jl:164  [4] top-level scope  @ ~/.julia/packages/Nclusion/2GcUL/src/Nclusion.jl:33  [5] include(mod::Module, _path::String)  @ Base ./Base.jl:306  [6] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3004  [7] top-level scope  @ stdin:6  [8] eval(m::Module, e::Any)  @ Core ./boot.jl:488  [9] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2855  [10] include_string  @ ./loading.jl:2865 [inlined]  [11] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:326  [12] _start()  @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/Nclusion/2GcUL/src/Nclusion.jl:1 in expression starting at stdin:6 ✗ Nclusion 0 dependencies successfully precompiled in 459 seconds. 433 already precompiled. ERROR: The following 1 direct dependency failed to precompile: Nclusion Failed to precompile Nclusion [cef8bb50-3052-47ee-9080-7fa14a4c9a42] to "/home/pkgeval/.julia/compiled/v1.13/Nclusion/jl_13PEIs" (ProcessExited(1)). WARNING: Constructor for type "Variable" was extended in `Zygote` without explicit qualification or import. NOTE: Assumed "Variable" refers to `IRTools.Variable`. This behavior is deprecated and may differ in future versions. NOTE: This behavior may have differed in Julia versions prior to 1.12. Hint: If you intended to create a new generic function of the same name, use `function Variable end`. Hint: To silence the warning, qualify `Variable` as `IRTools.Variable` in the method signature or explicitly `import IRTools: Variable`. Base.IOError("could not spawn `gnuplot --version`: no such file or directory (ENOENT)", -2) ┌ Warning: Enabling dry sessions └ @ Gnuplot ~/.julia/packages/Gnuplot/lL0gK/src/Gnuplot.jl:86 ERROR: LoadError: KeyError: key "PWD" not found Stacktrace: [1] (::Base.var"#getindex##11#getindex##12")(k::String) @ Base ./env.jl:164 [2] access_env(onError::Base.var"#getindex##11#getindex##12", var::String) @ Base ./env.jl:60 [3] getindex(::Base.EnvDict, k::String) @ Base ./env.jl:164 [4] top-level scope @ ~/.julia/packages/Nclusion/2GcUL/src/Nclusion.jl:33 [5] include(mod::Module, _path::String) @ Base ./Base.jl:306 [6] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3004 [7] top-level scope @ stdin:6 [8] eval(m::Module, e::Any) @ Core ./boot.jl:488 [9] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2855 [10] include_string @ ./loading.jl:2865 [inlined] [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [12] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/Nclusion/2GcUL/src/Nclusion.jl:1 in expression starting at stdin: Loading failed after 460.22s ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so -g1 --check-bounds=yes --inline=yes --pkgimages=existing -e 'using Nclusion'`, ProcessExited(1)) [1] Stacktrace: [1] pipeline_error @ ./process.jl:598 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:513 [3] run(::Cmd) @ Base ./process.jl:510 [4] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:193 [5] include(mod::Module, _path::String) @ Base ./Base.jl:306 [6] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [7] _start() @ Base ./client.jl:560 in expression starting at /PkgEval.jl/scripts/evaluate.jl:184 PkgEval failed after 771.74s: illegal method overwrites during precompilation