Package evaluation of MatrixLMnet on Julia 1.13.0-DEV.140 (fac1ce7906*) started at 2025-03-02T12:19:02.628 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.79s ################################################################################ # Installation # Installing MatrixLMnet... Resolving package versions... Installed Rmath ─────────────────────── v0.8.0 Installed Crayons ───────────────────── v4.1.1 Installed IrrationalConstants ───────── v0.2.4 Installed StatsFuns ─────────────────── v1.3.2 Installed HypergeometricFunctions ───── v0.3.27 Installed Preferences ───────────────── v1.4.3 Installed PtrArrays ─────────────────── v1.3.0 Installed TableTraits ───────────────── v1.0.1 Installed IterTools ─────────────────── v1.10.0 Installed SentinelArrays ────────────── v1.4.8 Installed SpecialFunctions ──────────── v2.5.0 Installed PrettyTables ──────────────── v2.4.0 Installed Tables ────────────────────── v1.12.0 Installed DataAPI ───────────────────── v1.16.0 Installed PooledArrays ──────────────── v1.4.3 Installed JLLWrappers ───────────────── v1.7.0 Installed InlineStrings ─────────────── v1.4.3 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed MatrixLM ──────────────────── v0.2.2 Installed DataValueInterfaces ───────── v1.0.0 Installed PrecompileTools ───────────── v1.2.1 Installed LaTeXStrings ──────────────── v1.4.0 Installed OrderedCollections ────────── v1.8.0 Installed InvertedIndices ───────────── v1.3.1 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed Reexport ──────────────────── v1.2.2 Installed MLBase ────────────────────── v0.9.2 Installed ShiftedArrays ─────────────── v2.0.0 Installed Statistics ────────────────── v1.11.1 Installed StatsModels ───────────────── v0.7.4 Installed LogExpFunctions ───────────── v0.3.29 Installed AliasTables ───────────────── v1.1.3 Installed DataStructures ────────────── v0.18.20 Installed DataFrames ────────────────── v1.7.0 Installed MatrixLMnet ───────────────── v1.1.1 Installed StatsAPI ──────────────────── v1.7.0 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed Compat ────────────────────── v4.16.0 Installed Missings ──────────────────── v1.2.0 Installed StringManipulation ────────── v0.4.1 Installed StatsBase ─────────────────── v0.34.4 Installed SortingAlgorithms ─────────── v1.2.1 Installed DocStringExtensions ───────── v0.9.3 Installing 2 artifacts Installed artifact Rmath 121.9 KiB Installed artifact OpenSpecFun 194.9 KiB Updating `~/.julia/environments/v1.13/Project.toml` [436227dc] + MatrixLMnet v1.1.1 Updating `~/.julia/environments/v1.13/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [34da2185] + Compat v4.16.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.20 [e2d170a0] + DataValueInterfaces v1.0.0 [ffbed154] + DocStringExtensions v0.9.3 [34004b35] + HypergeometricFunctions v0.3.27 [842dd82b] + InlineStrings v1.4.3 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [b964fa9f] + LaTeXStrings v1.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [f0e99cf1] + MLBase v0.9.2 [37290134] + MatrixLM v0.2.2 [436227dc] + MatrixLMnet v1.1.1 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.0 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [43287f4e] + PtrArrays v1.3.0 [189a3867] + Reexport v1.2.2 [79098fc4] + Rmath v0.8.0 [91c51154] + SentinelArrays v1.4.8 [1277b4bf] + ShiftedArrays v2.0.0 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [4c63d2b9] + StatsFuns v1.3.2 [3eaba693] + StatsModels v0.7.4 [892a3eda] + StringManipulation v0.4.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 Installation completed after 7.03s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 6046.8 ms ✓ TestEnv 1 dependency successfully precompiled in 8 seconds. 25 already precompiled. Precompiling package dependencies... Precompilation completed after 287.47s ################################################################################ # Testing # Testing MatrixLMnet Status `/tmp/jl_nniR33/Project.toml` [a93c6f00] DataFrames v1.7.0 [31c24e10] Distributions v0.25.117 [3f79f04f] Helium v0.2.1 [f0e99cf1] MLBase v0.9.2 [37290134] MatrixLM v0.2.2 [436227dc] MatrixLMnet v1.1.1 [189a3867] Reexport v1.2.2 [860ef19b] StableRNGs v1.0.2 [10745b16] Statistics v1.11.1 [8ba89e20] Distributed v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_nniR33/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [34da2185] Compat v4.16.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.20 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.117 [ffbed154] DocStringExtensions v0.9.3 [1a297f60] FillArrays v1.13.0 [3f79f04f] Helium v0.2.1 [34004b35] HypergeometricFunctions v0.3.27 [842dd82b] InlineStrings v1.4.3 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [b964fa9f] LaTeXStrings v1.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [f0e99cf1] MLBase v0.9.2 [37290134] MatrixLM v0.2.2 [436227dc] MatrixLMnet v1.1.1 [e1d29d7a] Missings v1.2.0 [bac558e1] OrderedCollections v1.8.0 [90014a1f] PDMats v0.11.32 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [79098fc4] Rmath v0.8.0 [91c51154] SentinelArrays v1.4.8 [1277b4bf] ShiftedArrays v2.0.0 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.0 [860ef19b] StableRNGs v1.0.2 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [4c63d2b9] StatsFuns v1.3.2 [3eaba693] StatsModels v0.7.4 [892a3eda] StringManipulation v0.4.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.0.16+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [8e850b90] libblastrampoline_jll v5.12.0+0 Testing Running tests... Lasso vs Elastic Net when α=1 test 1 - ista: Test Passed Lasso vs Elastic Net when α=1 test 2 - fista: Test Passed Lasso vs Elastic Net when α=1 test 3 - fista-bt: Test Passed Lasso vs Elastic Net when α=1 test 4 - admm: Test Passed Lasso vs Elastic Net when α=1 test 5 - cd: Test Passed Test that original data remains unchanged test 6: Test Passed Tests mlmnet finished! CV Lasso vs Elastic Net when α=1 test 1 - ista: Test Passed CV Lasso vs Elastic Net when α=1 test 2 - fista: Test Passed CV Lasso vs Elastic Net when α=1 test 3 - fista-bt: Test Passed CV Lasso vs Elastic Net when α=1 test 4 - admm: Test Passed MatrixLMnet: Test Failed at /home/pkgeval/.julia/packages/MatrixLMnet/2uUv8/test/mlmnetCvTests.jl:157 Expression: ≈(smmr_Net1.AvgMSE, smmr_cd[:, 1]; atol = tolVersion) && (≈(smmr_Net1.AvgPropZero, smmr_cd[:, 2], atol = tolVersion) && (≈(smmr_Net2.AvgMSE, smmr_cd[:, 1]; atol = tolVersion) && ≈(smmr_Net2.AvgPropZero, smmr_cd[:, 2]; atol = tolVersion))) Stacktrace: [1] top-level scope @ ~/.julia/packages/MatrixLMnet/2uUv8/test/mlmnetCvTests.jl:0 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:679 [inlined] [3] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:307 [4] top-level scope @ ~/.julia/packages/MatrixLMnet/2uUv8/test/runtests.jl:9 [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1771 [inlined] [6] macro expansion @ ~/.julia/packages/MatrixLMnet/2uUv8/test/runtests.jl:10 [inlined] CV Lasso vs Elastic Net when α=1 test 5 - cd: Test Failed at /home/pkgeval/.julia/packages/MatrixLMnet/2uUv8/test/mlmnetCvTests.jl:157 Expression: ≈(smmr_Net1.AvgMSE, smmr_cd[:, 1]; atol = tolVersion) && (≈(smmr_Net1.AvgPropZero, smmr_cd[:, 2], atol = tolVersion) && (≈(smmr_Net2.AvgMSE, smmr_cd[:, 1]; atol = tolVersion) && ≈(smmr_Net2.AvgPropZero, smmr_cd[:, 2]; atol = tolVersion))) Tests mlmnet_cv finished! Summary cross-validation test 1 - ista: Test Passed Summary cross-validation test 2 - fista: Test Passed Summary cross-validation test 3 - fista_bt: Test Passed Summary cross-validation test 4 - admm: Test Passed Summary cross-validation test 5 - cd: Test Passed BIC validation test 1:Test Passed Criterion: 26.61961026430005 Number of iterations: 14 Criterion: 18.625904711033456 Number of iterations: 12 Criterion: 13.744252167548073 Number of iterations: 12 Adding X intercept to newPredictors. Adding Z intercept to newPredictors. Criterion: 133.98533982136286 Number of iterations: 16 Criterion: 77.64118299653353 Number of iterations: 20 Criterion: 50.59847027889474 Number of iterations: 19 Removing X intercept from newPredictors. Removing Z intercept from newPredictors. Backtransform test α=0 and λ=0 test 3-a: Test Passed Backtransform test α=0 and λ=0 test 3-b: Test Passed Backtransform test α=0 and λ=0 test 3-c: Test Passed Backtransform test α=0 and λ=0 test 3-d: Test Passed Tests utilities finished! Test Summary: | Pass Fail Total Time MatrixLMnet | 35 1 36 2m33.1s coef and predict | 2 2 0.8s With Intercept | 4 4 4.2s Testing minimize_rows function | 6 6 0.1s RNG of the outermost testset: Xoshiro(0x0503ea899c992d0d, 0x12231cc5e71d2c71, 0x19c296c069fc2653, 0x5a254ef710dfaea3, 0x333f5b5ed9fb3874) ERROR: LoadError: Some tests did not pass: 35 passed, 1 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/MatrixLMnet/2uUv8/test/runtests.jl:7 Testing failed after 177.86s ERROR: LoadError: Package MatrixLMnet errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2386 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2241 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:486 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:306 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [12] _start() @ Base ./client.jl:560 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 504.54s: package has test failures