Package evaluation of DANDIArchive on Julia 1.13.0-DEV.140 (fac1ce7906*) started at 2025-03-02T10:08:27.191 ################################################################################ # Set-up # Set-up completed after 0.17s ################################################################################ # Installation # Installing DANDIArchive... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [47d7f1a7] + DANDIArchive v0.51.0 Updating `~/.julia/environments/v1.13/Manifest.toml` [992eb4ea] + CondaPkg v0.2.25 [47d7f1a7] + DANDIArchive v0.51.0 [9a962f9c] + DataAPI v1.16.0 [e2d170a0] + DataValueInterfaces v1.0.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [0f8b85d8] + JSON3 v1.14.1 [1914dd2f] + MacroTools v0.5.15 [0b3b1443] + MicroMamba v0.1.14 [bac558e1] + OrderedCollections v1.8.0 [69de0a69] + Parsers v2.8.1 [fa939f87] + Pidfile v1.3.0 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [6099a3de] + PythonCall v0.9.24 [ae029012] + Requires v1.3.1 [6c6a2e73] + Scratch v1.2.1 [856f2bd8] + StructTypes v1.11.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [e17b2a0c] + UnsafePointers v1.0.0 [f8abcde7] + micromamba_jll v1.5.8+0 [4d7b5844] + pixi_jll v0.41.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [deac9b47] + LibCURL_jll v8.11.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2024.12.31 [458c3c95] + OpenSSL_jll v3.0.16+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.5.0+2 Installation completed after 2.12s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml` No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml` Precompiling package dependencies... Precompiling packages... 82718.1 ms ✓ DANDIArchive 1 dependency successfully precompiled in 85 seconds. 52 already precompiled. 1 dependency had output during precompilation: ┌ DANDIArchive │ CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/WMWY0/CondaPkg.toml │ CondaPkg Found dependencies: /home/pkgeval/.julia/packages/DANDIArchive/B2vzr/CondaPkg.toml │ CondaPkg Resolving changes │ + dandi │ + h5py │ + libstdcxx-ng │ + openssl │ + pynwb │ + python │ CondaPkg Initialising pixi │ │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ │ init │ │ --format pixi │ └ /home/pkgeval/.julia/environments/v1.13/.CondaPkg │ ✔ Created /home/pkgeval/.julia/environments/v1.13/.CondaPkg/pixi.toml │ CondaPkg Wrote /home/pkgeval/.julia/environments/v1.13/.CondaPkg/pixi.toml │ │ [dependencies] │ │ dandi = "==0.51" │ │ openssl = ">=3, <3.1" │ │ libstdcxx-ng = ">=3.4,<13.0" │ │ h5py = "*" │ │ pynwb = "*" │ │ │ │ [dependencies.python] │ │ channel = "conda-forge" │ │ build = "*cpython*" │ │ version = ">=3.8,<4" │ │ │ │ [project] │ │ name = ".CondaPkg" │ │ platforms = ["linux-64"] │ │ channels = ["conda-forge"] │ │ channel-priority = "disabled" │ └ description = "automatically generated by CondaPkg.jl" │ CondaPkg Installing packages │ │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ │ install │ └ --manifest-path /home/pkgeval/.julia/environments/v1.13/.CondaPkg/pixi.toml │ ✔ The default environment has been installed. └ Precompilation completed after 63.28s ################################################################################ # Loading # Loading DANDIArchive... Precompiling packages... 17677.5 ms ✓ DANDIArchive 1 dependency successfully precompiled in 18 seconds. 52 already precompiled. ERROR: InitError: Python: ImportError: cannot import name 'inspect_nwb' from 'nwbinspector' (/home/pkgeval/.julia/environments/v1.13/.CondaPkg/.pixi/envs/default/lib/python3.11/site-packages/nwbinspector/__init__.py) Python stacktrace: [1] @ ~/.julia/environments/v1.13/.CondaPkg/.pixi/envs/default/lib/python3.11/site-packages/dandi/files/bases.py:22 [2] @ ~/.julia/environments/v1.13/.CondaPkg/.pixi/envs/default/lib/python3.11/site-packages/dandi/files/_private.py:17 [3] @ ~/.julia/environments/v1.13/.CondaPkg/.pixi/envs/default/lib/python3.11/site-packages/dandi/files/__init__.py:23 [4] @ ~/.julia/environments/v1.13/.CondaPkg/.pixi/envs/default/lib/python3.11/site-packages/dandi/download.py:52 Stacktrace: [1] pythrow() @ PythonCall.Core ~/.julia/packages/PythonCall/WMWY0/src/Core/err.jl:92 [2] errcheck @ ~/.julia/packages/PythonCall/WMWY0/src/Core/err.jl:10 [inlined] [3] pyimport(m::String) @ PythonCall.Core ~/.julia/packages/PythonCall/WMWY0/src/Core/builtins.jl:1561 [4] top-level scope @ none:1 [5] eval(m::Module, e::Any) @ Core ./boot.jl:488 [6] EvalInto @ ./boot.jl:493 [inlined] [7] |> @ ./operators.jl:973 [inlined] [8] _broadcast_getindex_evalf @ ./broadcast.jl:699 [inlined] [9] _broadcast_getindex @ ./broadcast.jl:672 [inlined] [10] _getindex @ ./broadcast.jl:620 [inlined] [11] getindex @ ./broadcast.jl:616 [inlined] [12] copyto_nonleaf!(dest::Vector{PythonCall.Core.Py}, bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Tuple{Base.OneTo{Int64}}, typeof(|>), Tuple{Base.Broadcast.Extruded{Vector{Expr}, Tuple{Bool}, Tuple{Int64}}, Base.RefValue{Core.EvalInto}}}, iter::Base.OneTo{Int64}, state::Int64, count::Int64) @ Base.Broadcast ./broadcast.jl:1104 [13] copy @ ./broadcast.jl:941 [inlined] [14] materialize(bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Nothing, typeof(|>), Tuple{Vector{Expr}, Base.RefValue{Core.EvalInto}}}) @ Base.Broadcast ./broadcast.jl:894 [15] __init__() @ DANDIArchive ~/.julia/packages/DANDIArchive/B2vzr/src/DANDIArchive.jl:14 [16] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1424 [17] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1412 [18] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}, ignore_native::Bool; register::Bool) @ Base ./loading.jl:1300 [19] _include_from_serialized @ ./loading.jl:1246 [inlined] [20] _tryrequire_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing) @ Base ./loading.jl:2014 [21] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2697 [22] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2493 [23] macro expansion @ ./loading.jl:2421 [inlined] [24] macro expansion @ ./lock.jl:376 [inlined] [25] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2386 [26] #invoke_in_world#2 @ ./essentials.jl:1125 [inlined] [27] invoke_in_world @ ./essentials.jl:1121 [inlined] [28] require(into::Module, mod::Symbol) @ Base ./loading.jl:2366 [29] eval(m::Module, e::Any) @ Core ./boot.jl:488 [30] exec_options(opts::Base.JLOptions) @ Base ./client.jl:294 [31] _start() @ Base ./client.jl:560 during initialization of module DANDIArchive Loading failed after 71.97s ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so -g1 --check-bounds=yes --inline=yes --pkgimages=existing -e 'using DANDIArchive'`, ProcessExited(1)) [1] Stacktrace: [1] pipeline_error @ ./process.jl:598 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:513 [3] run(::Cmd) @ Base ./process.jl:510 [4] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:193 [5] include(mod::Module, _path::String) @ Base ./Base.jl:306 [6] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [7] _start() @ Base ./client.jl:560 in expression starting at /PkgEval.jl/scripts/evaluate.jl:184 PkgEval failed after 187.05s: there were unidentified errors