Package evaluation of ClimaAtmos on Julia 1.13.0-DEV.140 (fac1ce7906*) started at 2025-03-02T17:30:48.301 ################################################################################ # Set-up # Set-up completed after 0.23s ################################################################################ # Installation # Installing ClimaAtmos... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [b2c96348] + ClimaAtmos v0.28.5 Updating `~/.julia/environments/v1.13/Manifest.toml` [47edcb42] + ADTypes v1.13.0 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.2.0 [c7e460c6] + ArgParse v1.2.0 [4fba245c] + ArrayInterface v7.18.0 [4c555306] + ArrayLayouts v1.11.1 [86bc3604] + AtmosphericProfilesLibrary v0.1.7 [a9b6321e] + Atomix v1.1.1 [13072b0f] + AxisAlgorithms v1.1.0 [aae01518] + BandedMatrices v1.9.2 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] + BlockArrays v1.4.0 [179af706] + CFTime v0.1.4 [2a0fbf3d] + CPUSummary v0.2.6 [d360d2e6] + ChainRulesCore v1.25.1 [b2c96348] + ClimaAtmos v0.28.5 [3a4d1b5c] + ClimaComms v0.6.6 [d414da3d] + ClimaCore v0.14.26 [1ecacbb8] + ClimaDiagnostics v0.2.12 [5c42b081] + ClimaParams v0.10.20 [595c0a79] + ClimaTimeSteppers v0.8.2 [b3f4f4ca] + ClimaUtilities v0.1.23 [fb6a15b2] + CloseOpenIntervals v0.1.13 [6a9e3e04] + CloudMicrophysics v0.22.9 [3da002f7] + ColorTypes v0.12.0 [5ae59095] + Colors v0.13.0 [861a8166] + Combinatorics v1.0.2 [1fbeeb36] + CommonDataModel v0.3.7 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.5.8 [adafc99b] + CpuId v0.3.1 [7445602f] + CubedSphere v0.3.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.20 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [2b5f629d] + DiffEqBase v6.164.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [3c3547ce] + DiskArrays v0.4.10 [ffbed154] + DocStringExtensions v0.9.3 [4e289a0a] + EnumX v1.0.4 [f151be2c] + EnzymeCore v0.8.8 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [442a2c76] + FastGaussQuadrature v1.0.2 [a4df4552] + FastPower v1.1.1 [1a297f60] + FillArrays v1.13.0 [53c48c17] + FixedPointNumbers v0.8.5 [f6369f11] + ForwardDiff v0.10.38 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [46192b85] + GPUArraysCore v0.2.0 [d54b0c1a] + GaussQuadrature v0.5.8 [88fa7841] + GilbertCurves v0.1.0 [19dc6840] + HCubature v1.7.0 [f67ccb44] + HDF5 v0.17.2 [615f187c] + IfElse v0.1.1 [e98cc03f] + Insolation v0.9.4 [a98d9a8b] + Interpolations v0.15.1 [8197267c] + IntervalSets v0.7.10 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [ae98c720] + Jieko v0.2.1 [63c18a36] + KernelAbstractions v0.9.34 [ba0b0d4f] + Krylov v0.9.10 ⌅ [0b1a1467] + KrylovKit v0.8.3 [8ac3fa9e] + LRUCache v1.6.1 [10f19ff3] + LayoutPointers v0.1.17 [9dccce8e] + LazyBroadcast v1.0.0 [5c8ed15e] + LinearOperators v2.9.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.1.0 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.15 [d125e4d3] + ManualMemory v0.1.8 [2e0e35c7] + Moshi v0.3.5 [46d2c3a1] + MuladdMacro v0.2.4 [c3c07f87] + MultiBroadcastFusion v0.3.3 [85f8d34a] + NCDatasets v0.14.6 ⌅ [5da4648a] + NVTX v0.3.5 [77ba4419] + NaNMath v1.1.2 [0d71be07] + NullBroadcasts v0.1.0 [6fe1bfb0] + OffsetArrays v1.15.0 [bac558e1] + OrderedCollections v1.8.0 [65ce6f38] + PackageExtensionCompat v1.0.2 [d96e819e] + Parameters v0.12.3 [eebad327] + PkgVersion v0.3.3 [f517fe37] + Polyester v0.7.16 [1d0040c9] + PolyesterWeave v0.2.2 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [1fd47b50] + QuadGK v2.11.2 ⌅ [a01a1ee8] + RRTMGP v0.20.1 [c84ed2f1] + Ratios v0.4.5 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.31.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [7181ea78] + RootSolvers v0.4.3 [7e49a35a] + RuntimeGeneratedFunctions v0.5.13 [94e857df] + SIMDTypes v0.1.0 [0bca4576] + SciMLBase v2.75.1 [c0aeaf25] + SciMLOperators v0.3.12 [53ae85a6] + SciMLStructures v1.6.1 [efcf1570] + Setfield v1.1.2 [276daf66] + SpecialFunctions v2.5.0 [aedffcd0] + Static v1.1.1 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [7792a7ef] + StrideArraysCore v0.5.7 [69024149] + StringEncodings v0.3.7 [49b00bb7] + SurfaceFluxes v0.12.0 [2efcf032] + SymbolicIndexingInterface v0.3.38 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [6aa5eb33] + TaylorSeries v0.18.3 [b718987f] + TextWrap v1.0.2 [b60c26fb] + Thermodynamics v0.12.9 [8290d209] + ThreadingUtilities v0.5.2 [a759f4b9] + TimerOutputs v0.5.28 [781d530d] + TruncatedStacktraces v1.4.0 [3a884ed6] + UnPack v1.0.2 [9602ed7d] + Unrolled v0.1.5 [0fe1646c] + UnrolledUtilities v0.1.6 [013be700] + UnsafeAtomics v0.3.0 ⌅ [409d34a3] + VectorInterface v0.4.9 [efce3f68] + WoodburyMatrices v1.0.0 [ddb6d928] + YAML v0.4.13 [0b7ba130] + Blosc_jll v1.21.6+2 [6e34b625] + Bzip2_jll v1.0.9+0 ⌅ [0234f1f7] + HDF5_jll v1.14.3+3 [e33a78d0] + Hwloc_jll v2.12.0+0 [9c1d0b0a] + JuliaNVTXCallbacks_jll v0.2.1+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [5ced341a] + Lz4_jll v1.10.1+0 [7cb0a576] + MPICH_jll v4.3.0+0 [f1f71cc9] + MPItrampoline_jll v5.5.2+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [e98f9f5b] + NVTX_jll v3.1.1+0 [7243133f] + NetCDF_jll v400.902.211+1 ⌅ [fe0851c0] + OpenMPI_jll v4.1.6+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [02c8fc9c] + XML2_jll v2.13.6+1 [ffd25f8a] + XZ_jll v5.6.4+1 [3161d3a3] + Zstd_jll v1.5.7+1 [477f73a3] + libaec_jll v1.1.3+0 [337d8026] + libzip_jll v1.11.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.11.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2024.12.31 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 12.79s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml` No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml` Precompiling package dependencies... Precompiling packages... 4583.4 ms ✓ RRTMGP 62515.3 ms ✓ ClimaCore 36955.1 ms ✓ CloudMicrophysics 1065.9 ms ✓ RRTMGP → CreateParametersExt 17963.4 ms ✓ ClimaCore → KrylovExt 18638.9 ms ✓ ClimaUtilities → ClimaUtilitiesClimaCoreExt 196702.4 ms ✓ ClimaDiagnostics 115314.3 ms ✓ ClimaUtilities → ClimaUtilitiesClimaCoreInterpolationsExt 19680.1 ms ✓ ClimaUtilities → ClimaUtilitiesClimaCoreNCDatasetsExt 24897.6 ms ? ClimaAtmos 9 dependencies successfully precompiled in 503 seconds. 254 already precompiled. 1 dependencies failed but may be precompilable after restarting julia 4 dependencies had output during precompilation: ┌ ClimaUtilities → ClimaUtilitiesClimaCoreInterpolationsExt │ WARNING: Constructor for type "BandedMatrixIndex" was extended in `ArrayInterfaceBandedMatricesExt` without explicit qualification or import. │ NOTE: Assumed "BandedMatrixIndex" refers to `ArrayInterface.BandedMatrixIndex`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function BandedMatrixIndex end`. │ Hint: To silence the warning, qualify `BandedMatrixIndex` as `ArrayInterface.BandedMatrixIndex` in the method signature or explicitly `import ArrayInterface: BandedMatrixIndex`. │ WARNING: Detected access to binding `MatrixFields.__nvtx_domain__` in a world prior to its definition world. │ Julia 1.12 has introduced more strict world age semantics for global bindings. │ !!! This code may malfunction under Revise. │ !!! This code will error in future versions of Julia. │ Hint: Add an appropriate `invokelatest` around the access to this binding. └ ┌ ClimaCore │ WARNING: Detected access to binding `MatrixFields.__nvtx_domain__` in a world prior to its definition world. │ Julia 1.12 has introduced more strict world age semantics for global bindings. │ !!! This code may malfunction under Revise. │ !!! This code will error in future versions of Julia. │ Hint: Add an appropriate `invokelatest` around the access to this binding. └ ┌ ClimaDiagnostics │ WARNING: Constructor for type "AbstractMatrix" was extended in `BandedMatrices` without explicit qualification or import. │ NOTE: Assumed "AbstractMatrix" refers to `Base.AbstractMatrix`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function AbstractMatrix end`. │ Hint: To silence the warning, qualify `AbstractMatrix` as `Base.AbstractMatrix` in the method signature or explicitly `import Base: AbstractMatrix`. │ WARNING: Constructor for type "AbstractArray" was extended in `BandedMatrices` without explicit qualification or import. │ NOTE: Assumed "AbstractArray" refers to `Base.AbstractArray`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function AbstractArray end`. │ Hint: To silence the warning, qualify `AbstractArray` as `Base.AbstractArray` in the method signature or explicitly `import Base: AbstractArray`. │ WARNING: Constructor for type "Matrix" was extended in `BandedMatrices` without explicit qualification or import. │ NOTE: Assumed "Matrix" refers to `Base.Matrix`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Matrix end`. │ Hint: To silence the warning, qualify `Matrix` as `Base.Matrix` in the method signature or explicitly `import Base: Matrix`. │ WARNING: Constructor for type "BandedMatrixIndex" was extended in `ArrayInterfaceBandedMatricesExt` without explicit qualification or import. │ NOTE: Assumed "BandedMatrixIndex" refers to `ArrayInterface.BandedMatrixIndex`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function BandedMatrixIndex end`. │ Hint: To silence the warning, qualify `BandedMatrixIndex` as `ArrayInterface.BandedMatrixIndex` in the method signature or explicitly `import ArrayInterface: BandedMatrixIndex`. │ WARNING: Detected access to binding `MatrixFields.__nvtx_domain__` in a world prior to its definition world. │ Julia 1.12 has introduced more strict world age semantics for global bindings. │ !!! This code may malfunction under Revise. │ !!! This code will error in future versions of Julia. │ Hint: Add an appropriate `invokelatest` around the access to this binding. └ ┌ ClimaAtmos │ WARNING: Method definition (::Type{ChainRulesCore.ProjectTo{P, D} where D<:(NamedTuple{names, T} where T<:Tuple where names) where P})(StaticArraysCore.SArray{S, T, N, L} where L where N) where {S, T} in module StaticArraysChainRulesCoreExt at /home/pkgeval/.julia/packages/StaticArrays/LSPcF/ext/StaticArraysChainRulesCoreExt.jl:17 overwritten in module StaticArraysChainRulesCoreExt on the same line (check for duplicate calls to `include`). │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ Precompilation completed after 507.99s ################################################################################ # Loading # Loading ClimaAtmos... Precompiling packages... 17346.4 ms ✓ ClimaCore → KrylovExt 153699.8 ms ✓ ClimaDiagnostics Info Given ClimaAtmos was explicitly requested, output will be shown live  WARNING: Method definition (::Type{ChainRulesCore.ProjectTo{P, D} where D<:(NamedTuple{names, T} where T<:Tuple where names) where P})(SparseArrays.SparseMatrixCSC{T, Ti} where Ti<:Integer) where {T<:Number} in module ChainRulesCoreSparseArraysExt at /home/pkgeval/.julia/packages/ChainRulesCore/U6wNx/ext/ChainRulesCoreSparseArraysExt.jl:53 overwritten in module ChainRulesCoreSparseArraysExt on the same line (check for duplicate calls to `include`). ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 36587.6 ms ? ClimaAtmos 2 dependencies successfully precompiled in 212 seconds. 261 already precompiled. 1 dependencies failed but may be precompilable after restarting julia 2 dependencies had output during precompilation: ┌ ClimaDiagnostics │ WARNING: Constructor for type "BandedMatrixIndex" was extended in `ArrayInterfaceBandedMatricesExt` without explicit qualification or import. │ NOTE: Assumed "BandedMatrixIndex" refers to `ArrayInterface.BandedMatrixIndex`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function BandedMatrixIndex end`. │ Hint: To silence the warning, qualify `BandedMatrixIndex` as `ArrayInterface.BandedMatrixIndex` in the method signature or explicitly `import ArrayInterface: BandedMatrixIndex`. │ WARNING: Detected access to binding `MatrixFields.__nvtx_domain__` in a world prior to its definition world. │ Julia 1.12 has introduced more strict world age semantics for global bindings. │ !!! This code may malfunction under Revise. │ !!! This code will error in future versions of Julia. │ Hint: Add an appropriate `invokelatest` around the access to this binding. └ ┌ ClimaAtmos │ [Output was shown above] └ WARNING: Detected access to binding `RRTMGPInterface.__nvtx_domain__` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. WARNING: Detected access to binding `ClimaAtmos.__nvtx_domain__` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. WARNING: Detected access to binding `ClimaTimeSteppers.__nvtx_domain__` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. Loading completed after 509.24s PkgEval succeeded after 1054.0s