Package evaluation of TransmissionChannelAnalysis on Julia 1.13.0-DEV.896 (efa4faf9a4*) started at 2025-07-25T12:56:03.188 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.35s ################################################################################ # Installation # Installing TransmissionChannelAnalysis... Resolving package versions... Installed IteratorInterfaceExtensions ─ v1.0.0 Installed InlineStrings ─────────────── v1.4.4 Installed OrderedCollections ────────── v1.8.1 Installed DataAPI ───────────────────── v1.16.0 Installed Compat ────────────────────── v4.17.0 Installed Combinatorics ─────────────── v1.0.3 Installed Statistics ────────────────── v1.11.1 Installed DataStructures ────────────── v0.18.22 Installed DataValueInterfaces ───────── v1.0.0 Installed InvertedIndices ───────────── v1.3.1 Installed SentinelArrays ────────────── v1.4.8 Installed StringManipulation ────────── v0.4.1 Installed JSON ──────────────────────── v0.21.4 Installed PrecompileTools ───────────── v1.3.2 Installed PrettyTables ──────────────── v2.4.0 Installed TransmissionChannelAnalysis ─ v0.2.0 Installed Parsers ───────────────────── v2.8.3 Installed Tables ────────────────────── v1.12.1 Installed Reexport ──────────────────── v1.2.2 Installed Missings ──────────────────── v1.2.0 Installed Preferences ───────────────── v1.4.3 Installed PooledArrays ──────────────── v1.4.3 Installed TableTraits ───────────────── v1.0.1 Installed LaTeXStrings ──────────────── v1.4.0 Installed DataFrames ────────────────── v1.7.0 Installed Crayons ───────────────────── v4.1.1 Installed SortingAlgorithms ─────────── v1.2.1 Updating `~/.julia/environments/v1.13/Project.toml` [d500094b] + TransmissionChannelAnalysis v0.2.0 Updating `~/.julia/environments/v1.13/Manifest.toml` [861a8166] + Combinatorics v1.0.3 [34da2185] + Compat v4.17.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [842dd82b] + InlineStrings v1.4.4 [41ab1584] + InvertedIndices v1.3.1 [82899510] + IteratorInterfaceExtensions v1.0.0 [682c06a0] + JSON v0.21.4 [b964fa9f] + LaTeXStrings v1.4.0 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [69de0a69] + Parsers v2.8.3 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [189a3867] + Reexport v1.2.2 [91c51154] + SentinelArrays v1.4.8 [a2af1166] + SortingAlgorithms v1.2.1 [10745b16] + Statistics v1.11.1 [892a3eda] + StringManipulation v0.4.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [d500094b] + TransmissionChannelAnalysis v0.2.0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [8e850b90] + libblastrampoline_jll v5.13.1+0 Installation completed after 3.71s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 2376.9 ms ✓ TestEnv 1 dependency successfully precompiled in 3 seconds. 26 already precompiled. Precompiling package dependencies... Precompilation completed after 138.77s ################################################################################ # Testing # Testing TransmissionChannelAnalysis Status `/tmp/jl_2ho59h/Project.toml` [861a8166] Combinatorics v1.0.3 [a93c6f00] DataFrames v1.7.0 [682c06a0] JSON v0.21.4 [d500094b] TransmissionChannelAnalysis v0.2.0 [37e2e46d] LinearAlgebra v1.13.0 [9a3f8284] Random v1.11.0 [9e88b42a] Serialization v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_2ho59h/Manifest.toml` [861a8166] Combinatorics v1.0.3 [34da2185] Compat v4.17.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [842dd82b] InlineStrings v1.4.4 [41ab1584] InvertedIndices v1.3.1 [82899510] IteratorInterfaceExtensions v1.0.0 [682c06a0] JSON v0.21.4 [b964fa9f] LaTeXStrings v1.4.0 [e1d29d7a] Missings v1.2.0 [bac558e1] OrderedCollections v1.8.1 [69de0a69] Parsers v2.8.3 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [189a3867] Reexport v1.2.2 [91c51154] SentinelArrays v1.4.8 [a2af1166] SortingAlgorithms v1.2.1 [10745b16] Statistics v1.11.1 [892a3eda] StringManipulation v0.4.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [d500094b] TransmissionChannelAnalysis v0.2.0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [4536629a] OpenBLAS_jll v0.3.29+0 [8e850b90] libblastrampoline_jll v5.13.1+0 Testing Running tests... Test Summary: | Pass Total Time Utils | 19 19 4.2s Test Summary: | Pass Total Time Representation | 14 14 17.6s AND: Error During Test at /home/pkgeval/.julia/packages/TransmissionChannelAnalysis/Ln3jm/test/simplifying.jl:46 Got exception outside of a @test MethodError: no method matching check_contradiction(::Vector{Vector{Int64}}, ::Vector{Vector{Any}}) The function `check_contradiction` exists, but no method is defined for this combination of argument types. Closest candidates are: check_contradiction(::Vector{Vector{Int64}}, !Matched::Vector{Vector{Int64}}) @ TransmissionChannelAnalysis ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/src/simplifying.jl:167 check_contradiction(!Matched::Vector{Int64}, !Matched::Vector{Int64}) @ TransmissionChannelAnalysis ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/src/simplifying.jl:163 Stacktrace: [1] remove_contradictions(q::TransmissionChannelAnalysis.Q) @ TransmissionChannelAnalysis ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/src/simplifying.jl:215 [2] &(q1::TransmissionChannelAnalysis.Q, q2::TransmissionChannelAnalysis.Q) @ TransmissionChannelAnalysis ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/src/simplifying.jl:0 [3] top-level scope @ ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/test/simplifying.jl:47 [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [5] macro expansion @ ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/test/simplifying.jl:49 [inlined] [6] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [7] top-level scope @ ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/test/runtests.jl:25 [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [9] macro expansion @ ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/test/runtests.jl:25 [inlined] [10] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [11] top-level scope @ none:6 [12] eval(m::Module, e::Any) @ Core ./boot.jl:489 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:286 [14] _start() @ Base ./client.jl:553 OR: Error During Test at /home/pkgeval/.julia/packages/TransmissionChannelAnalysis/Ln3jm/test/simplifying.jl:64 Got exception outside of a @test MethodError: no method matching check_contradiction(::Vector{Vector{Int64}}, ::Vector{Vector{Any}}) The function `check_contradiction` exists, but no method is defined for this combination of argument types. Closest candidates are: check_contradiction(::Vector{Vector{Int64}}, !Matched::Vector{Vector{Int64}}) @ TransmissionChannelAnalysis ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/src/simplifying.jl:167 check_contradiction(!Matched::Vector{Int64}, !Matched::Vector{Int64}) @ TransmissionChannelAnalysis ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/src/simplifying.jl:163 Stacktrace: [1] remove_contradictions(q::TransmissionChannelAnalysis.Q) @ TransmissionChannelAnalysis ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/src/simplifying.jl:215 [2] &(q1::TransmissionChannelAnalysis.Q, q2::TransmissionChannelAnalysis.Q) @ TransmissionChannelAnalysis ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/src/simplifying.jl:0 [3] |(q1::TransmissionChannelAnalysis.Q, q2::TransmissionChannelAnalysis.Q) @ TransmissionChannelAnalysis ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/src/simplifying.jl:252 [4] top-level scope @ ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/test/simplifying.jl:65 [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [6] macro expansion @ ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/test/simplifying.jl:67 [inlined] [7] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [8] top-level scope @ ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/test/runtests.jl:25 [9] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [10] macro expansion @ ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/test/runtests.jl:25 [inlined] [11] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [12] top-level scope @ none:6 [13] eval(m::Module, e::Any) @ Core ./boot.jl:489 [14] exec_options(opts::Base.JLOptions) @ Base ./client.jl:286 [15] _start() @ Base ./client.jl:553 NOT: Error During Test at /home/pkgeval/.julia/packages/TransmissionChannelAnalysis/Ln3jm/test/simplifying.jl:83 Got exception outside of a @test MethodError: no method matching check_contradiction(::Vector{Vector{Int64}}, ::Vector{Vector{Any}}) The function `check_contradiction` exists, but no method is defined for this combination of argument types. Closest candidates are: check_contradiction(::Vector{Vector{Int64}}, !Matched::Vector{Vector{Int64}}) @ TransmissionChannelAnalysis ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/src/simplifying.jl:167 check_contradiction(!Matched::Vector{Int64}, !Matched::Vector{Int64}) @ TransmissionChannelAnalysis ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/src/simplifying.jl:163 Stacktrace: [1] remove_contradictions(q::TransmissionChannelAnalysis.Q) @ TransmissionChannelAnalysis ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/src/simplifying.jl:215 [2] &(q1::TransmissionChannelAnalysis.Q, q2::TransmissionChannelAnalysis.Q) @ TransmissionChannelAnalysis ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/src/simplifying.jl:0 [3] top-level scope @ ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/test/simplifying.jl:84 [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [5] macro expansion @ ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/test/simplifying.jl:89 [inlined] [6] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [7] top-level scope @ ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/test/runtests.jl:25 [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [9] macro expansion @ ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/test/runtests.jl:25 [inlined] [10] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [11] top-level scope @ none:6 [12] eval(m::Module, e::Any) @ Core ./boot.jl:489 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:286 [14] _start() @ Base ./client.jl:553 [ Info: Using method :BOmega to calculate transmission effect. create_transmission_function: Error During Test at /home/pkgeval/.julia/packages/TransmissionChannelAnalysis/Ln3jm/test/transmission-function.jl:1 Got exception outside of a @test MethodError: no method matching transmission(::Int64, ::Matrix{Float64}, ::Matrix{Float64}, ::Vector{Vector{Any}}, ::Vector{Vector{Int64}}, ::Vector{Number}, ::Type{Val{:BOmega}}) The function `transmission` exists, but no method is defined for this combination of argument types. Closest candidates are: transmission(::Int64, ::Matrix, ::Matrix, !Matched::Vector{Vector{Int64}}, ::Vector{Vector{Int64}}, ::Vector{Number}, ::Type{Val{:BOmega}}) @ TransmissionChannelAnalysis ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/src/transmission-function-BOmega.jl:141 transmission(::Int64, ::AbstractMatrix{T}, ::AbstractMatrix{T}, !Matched::AbstractVector{Int64}, !Matched::AbstractVector{Int64}, !Matched::Number, !Matched::Type{Val{:irfs}}) where T @ TransmissionChannelAnalysis ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/src/transmission-function-irfs.jl:122 transmission(::Int64, ::AbstractMatrix{T}, ::AbstractMatrix{T}, !Matched::TransmissionChannelAnalysis.Q, !Matched::Type{Val{:irfs}}) where T @ TransmissionChannelAnalysis ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/src/transmission-function-irfs.jl:103 ... Stacktrace: [1] transmission(from::Int64, B::Matrix{Float64}, Omega::Matrix{Float64}, q::TransmissionChannelAnalysis.Q, ::Type{Val{:BOmega}}) @ TransmissionChannelAnalysis ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/src/transmission-function-BOmega.jl:102 [2] transmission(from::Int64, arr1::Matrix{Float64}, arr2::Matrix{Float64}, q::TransmissionChannelAnalysis.Q; method::Symbol) @ TransmissionChannelAnalysis ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/src/transmission-function.jl:121 [3] transmission(from::Int64, arr1::Matrix{Float64}, arr2::Matrix{Float64}, q::TransmissionChannelAnalysis.Q) @ TransmissionChannelAnalysis ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/src/transmission-function.jl:120 [4] test1(irfs::Matrix{Float64}, irfs_ortho::Matrix{Float64}, B::Matrix{Float64}, Omega::Matrix{Float64}) @ Main ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/test/transmission-function-tests.jl:3 [5] top-level scope @ ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/test/transmission-function.jl:3 [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [7] macro expansion @ ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/test/transmission-function.jl:9 [inlined] [8] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [9] top-level scope @ ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/test/runtests.jl:25 [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [11] macro expansion @ ~/.julia/packages/TransmissionChannelAnalysis/Ln3jm/test/runtests.jl:26 [inlined] [12] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [13] top-level scope @ none:6 [14] eval(m::Module, e::Any) @ Core ./boot.jl:489 [15] exec_options(opts::Base.JLOptions) @ Base ./client.jl:286 [16] _start() @ Base ./client.jl:553 Test Summary: | Pass Error Total Time TransmissionChannelAnalysis.jl REMOVE_CONTRADICTIONS = true | 17 4 21 18.5s Q constructors | 5 5 0.7s collect_terms | 6 6 1.3s string_and | 5 5 1.5s AND | 1 1 8.0s OR | 1 1 0.2s NOT | 1 1 2 0.3s create_transmission_function | 1 1 6.5s RNG of the outermost testset: Xoshiro(0x86fa2587ccf5e659, 0x90ddd73014965413, 0xd1d34f8f2754f6d8, 0x1a1a42553efc0e6e, 0x096c0938884619cc) ERROR: LoadError: Some tests did not pass: 17 passed, 0 failed, 4 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/TransmissionChannelAnalysis/Ln3jm/test/runtests.jl:23 Testing failed after 58.43s ERROR: LoadError: Package TransmissionChannelAnalysis errored during testing Stacktrace: [1] pkgerror(::String, ::Vararg{String}) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2661 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2510 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:538 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:168 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [7] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:155 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:311 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:320 [12] _start() @ Base ./client.jl:553 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 262.13s: package tests unexpectedly errored