Package evaluation of StructuralCausalModels on Julia 1.13.0-DEV.896 (efa4faf9a4*) started at 2025-07-25T15:13:48.715


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 14.18s


################################################################################
# Installation
#

Installing StructuralCausalModels...
   Resolving package versions...
   Installed DelimitedFiles ────────────── v1.9.1
   Installed FilePathsBase ─────────────── v0.9.24
   Installed InlineStrings ─────────────── v1.4.4
   Installed Rmath_jll ─────────────────── v0.5.1+0
   Installed HypergeometricFunctions ───── v0.3.28
   Installed FillArrays ────────────────── v1.13.0
   Installed CodecZlib ─────────────────── v0.7.8
   Installed AliasTables ───────────────── v1.1.3
   Installed DataStructures ────────────── v0.18.22
   Installed StatsBase ─────────────────── v0.34.5
   Installed TranscodingStreams ────────── v0.11.3
   Installed OrderedCollections ────────── v1.8.1
   Installed DataAPI ───────────────────── v1.16.0
   Installed InvertedIndices ───────────── v1.3.1
   Installed IteratorInterfaceExtensions ─ v1.0.0
   Installed Compat ────────────────────── v4.17.0
   Installed Combinatorics ─────────────── v1.0.3
   Installed Statistics ────────────────── v1.11.1
   Installed StructuralCausalModels ────── v1.4.2
   Installed DataValueInterfaces ───────── v1.0.0
   Installed StatsAPI ──────────────────── v1.7.1
   Installed SentinelArrays ────────────── v1.4.8
   Installed StringManipulation ────────── v0.4.1
   Installed QuadGK ────────────────────── v2.11.2
   Installed IrrationalConstants ───────── v0.2.4
   Installed PrecompileTools ───────────── v1.3.2
   Installed Requires ──────────────────── v1.3.1
   Installed OpenSpecFun_jll ───────────── v0.5.6+0
   Installed Rmath ─────────────────────── v0.8.0
   Installed Parsers ───────────────────── v2.8.3
   Installed StatsFuns ─────────────────── v1.5.0
   Installed LogExpFunctions ───────────── v0.3.29
   Installed Tables ────────────────────── v1.12.1
   Installed PrettyTables ──────────────── v2.4.0
   Installed Distributions ─────────────── v0.25.120
   Installed CSV ───────────────────────── v0.10.15
   Installed PtrArrays ─────────────────── v1.3.0
   Installed WeakRefStrings ────────────── v1.4.2
   Installed Reexport ──────────────────── v1.2.2
   Installed Missings ──────────────────── v1.2.0
   Installed SpecialFunctions ──────────── v2.5.1
   Installed Preferences ───────────────── v1.4.3
   Installed PooledArrays ──────────────── v1.4.3
   Installed LaTeXStrings ──────────────── v1.4.0
   Installed JLLWrappers ───────────────── v1.7.1
   Installed TableTraits ───────────────── v1.0.1
   Installed PDMats ────────────────────── v0.11.35
   Installed Crayons ───────────────────── v4.1.1
   Installed DataFrames ────────────────── v1.7.0
   Installed SortingAlgorithms ─────────── v1.2.1
   Installed WorkerUtilities ───────────── v1.6.1
   Installed DocStringExtensions ───────── v0.9.5
   Installed NamedArrays ───────────────── v0.10.4
  Installing 2 artifacts
   Installed artifact Rmath       121.9 KiB
   Installed artifact OpenSpecFun 194.9 KiB
    Updating `~/.julia/environments/v1.13/Project.toml`
  [a41e6734] + StructuralCausalModels v1.4.2
    Updating `~/.julia/environments/v1.13/Manifest.toml`
  [66dad0bd] + AliasTables v1.1.3
  [336ed68f] + CSV v0.10.15
  [944b1d66] + CodecZlib v0.7.8
  [861a8166] + Combinatorics v1.0.3
  [34da2185] + Compat v4.17.0
  [a8cc5b0e] + Crayons v4.1.1
  [9a962f9c] + DataAPI v1.16.0
  [a93c6f00] + DataFrames v1.7.0
  [864edb3b] + DataStructures v0.18.22
  [e2d170a0] + DataValueInterfaces v1.0.0
  [8bb1440f] + DelimitedFiles v1.9.1
  [31c24e10] + Distributions v0.25.120
  [ffbed154] + DocStringExtensions v0.9.5
  [48062228] + FilePathsBase v0.9.24
  [1a297f60] + FillArrays v1.13.0
  [34004b35] + HypergeometricFunctions v0.3.28
  [842dd82b] + InlineStrings v1.4.4
  [41ab1584] + InvertedIndices v1.3.1
  [92d709cd] + IrrationalConstants v0.2.4
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [692b3bcd] + JLLWrappers v1.7.1
  [b964fa9f] + LaTeXStrings v1.4.0
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [e1d29d7a] + Missings v1.2.0
  [86f7a689] + NamedArrays v0.10.4
  [bac558e1] + OrderedCollections v1.8.1
  [90014a1f] + PDMats v0.11.35
  [69de0a69] + Parsers v2.8.3
  [2dfb63ee] + PooledArrays v1.4.3
  [aea7be01] + PrecompileTools v1.3.2
  [21216c6a] + Preferences v1.4.3
  [08abe8d2] + PrettyTables v2.4.0
  [43287f4e] + PtrArrays v1.3.0
  [1fd47b50] + QuadGK v2.11.2
  [189a3867] + Reexport v1.2.2
  [ae029012] + Requires v1.3.1
  [79098fc4] + Rmath v0.8.0
  [91c51154] + SentinelArrays v1.4.8
  [a2af1166] + SortingAlgorithms v1.2.1
  [276daf66] + SpecialFunctions v2.5.1
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.7.1
  [2913bbd2] + StatsBase v0.34.5
  [4c63d2b9] + StatsFuns v1.5.0
  [892a3eda] + StringManipulation v0.4.1
  [a41e6734] + StructuralCausalModels v1.4.2
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.1
  [3bb67fe8] + TranscodingStreams v0.11.3
  [ea10d353] + WeakRefStrings v1.4.2
  [76eceee3] + WorkerUtilities v1.6.1
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [f50d1b31] + Rmath_jll v0.5.1+0
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.13.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [2f01184e] + SparseArrays v1.13.0
  [f489334b] + StyledStrings v1.11.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [05823500] + OpenLibm_jll v0.8.5+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [83775a58] + Zlib_jll v1.3.1+2
  [8e850b90] + libblastrampoline_jll v5.13.1+0

Installation completed after 9.05s


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# Precompilation
#

Precompiling PkgEval dependencies...
Precompiling packages...
   3412.2 ms  ✓ TestEnv
  1 dependency successfully precompiled in 4 seconds. 26 already precompiled.

Precompiling package dependencies...

Precompilation completed after 254.72s


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# Testing
#

     Testing StructuralCausalModels
      Status `/tmp/jl_pR2yxY/Project.toml`
  [336ed68f] CSV v0.10.15
  [861a8166] Combinatorics v1.0.3
  [a93c6f00] DataFrames v1.7.0
  [864edb3b] DataStructures v0.18.22
  [31c24e10] Distributions v0.25.120
  [ffbed154] DocStringExtensions v0.9.5
  [86f7a689] NamedArrays v0.10.4
  [189a3867] Reexport v1.2.2
  [10745b16] Statistics v1.11.1
  [a41e6734] StructuralCausalModels v1.4.2
  [37e2e46d] LinearAlgebra v1.13.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_pR2yxY/Manifest.toml`
  [66dad0bd] AliasTables v1.1.3
  [336ed68f] CSV v0.10.15
  [944b1d66] CodecZlib v0.7.8
  [861a8166] Combinatorics v1.0.3
  [34da2185] Compat v4.17.0
  [a8cc5b0e] Crayons v4.1.1
  [9a962f9c] DataAPI v1.16.0
  [a93c6f00] DataFrames v1.7.0
  [864edb3b] DataStructures v0.18.22
  [e2d170a0] DataValueInterfaces v1.0.0
  [8bb1440f] DelimitedFiles v1.9.1
  [31c24e10] Distributions v0.25.120
  [ffbed154] DocStringExtensions v0.9.5
  [48062228] FilePathsBase v0.9.24
  [1a297f60] FillArrays v1.13.0
  [34004b35] HypergeometricFunctions v0.3.28
  [842dd82b] InlineStrings v1.4.4
  [41ab1584] InvertedIndices v1.3.1
  [92d709cd] IrrationalConstants v0.2.4
  [82899510] IteratorInterfaceExtensions v1.0.0
  [692b3bcd] JLLWrappers v1.7.1
  [b964fa9f] LaTeXStrings v1.4.0
  [2ab3a3ac] LogExpFunctions v0.3.29
  [e1d29d7a] Missings v1.2.0
  [86f7a689] NamedArrays v0.10.4
  [bac558e1] OrderedCollections v1.8.1
  [90014a1f] PDMats v0.11.35
  [69de0a69] Parsers v2.8.3
  [2dfb63ee] PooledArrays v1.4.3
  [aea7be01] PrecompileTools v1.3.2
  [21216c6a] Preferences v1.4.3
  [08abe8d2] PrettyTables v2.4.0
  [43287f4e] PtrArrays v1.3.0
  [1fd47b50] QuadGK v2.11.2
  [189a3867] Reexport v1.2.2
  [ae029012] Requires v1.3.1
  [79098fc4] Rmath v0.8.0
  [91c51154] SentinelArrays v1.4.8
  [a2af1166] SortingAlgorithms v1.2.1
  [276daf66] SpecialFunctions v2.5.1
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.7.1
  [2913bbd2] StatsBase v0.34.5
  [4c63d2b9] StatsFuns v1.5.0
  [892a3eda] StringManipulation v0.4.1
  [a41e6734] StructuralCausalModels v1.4.2
  [3783bdb8] TableTraits v1.0.1
  [bd369af6] Tables v1.12.1
  [3bb67fe8] TranscodingStreams v0.11.3
  [ea10d353] WeakRefStrings v1.4.2
  [76eceee3] WorkerUtilities v1.6.1
  [efe28fd5] OpenSpecFun_jll v0.5.6+0
  [f50d1b31] Rmath_jll v0.5.1+0
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [9fa8497b] Future v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.13.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization v1.11.0
  [2f01184e] SparseArrays v1.13.0
  [f489334b] StyledStrings v1.11.0
  [4607b0f0] SuiteSparse
  [fa267f1f] TOML v1.0.3
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [4536629a] OpenBLAS_jll v0.3.29+0
  [05823500] OpenLibm_jll v0.8.5+0
  [bea87d4a] SuiteSparse_jll v7.10.1+0
  [83775a58] Zlib_jll v1.3.1+2
  [8e850b90] libblastrampoline_jll v5.13.1+0
     Testing Running tests...
Test Summary:    | Pass  Total  Time
dag_formulations |   49     49  0.4s
Test Summary: | Pass  Total  Time
set_dag_df    |    6      6  0.8s
Test Summary:       | Pass  Total  Time
dagitty conversions |    8      8  1.6s
Test Summary:   | Pass  Total  Time
ggm conversions |    7      7  2.6s
Test Summary:       | Pass  Total  Time
GraphViz conversion |    1      1  0.0s
Test Summary: | Pass  Total  Time
basis_set_01  |    9      9  0.0s
Test Summary: | Pass  Total  Time
d_separation  |   70     70  8.7s
Test Summary:       | Pass  Total  Time
Test_descendents_01 |    8      8  0.0s
Test Summary:   | Pass  Total  Time
Adjustment_sets |    4      4  0.0s
Test Summary:       | Pass  Total  Time
Test_descendents_02 |    6      6  0.0s
Test Summary:   | Pass  Total  Time
Adjustment_sets |    6      6  0.0s
Test Summary:       | Pass  Total  Time
Test_descendents_03 |    6      6  0.0s
Test Summary:   | Pass  Total  Time
Adjustment_sets |    6      6  0.0s
Test Summary: | Pass  Total  Time
Open_path_01  |    1      1  0.3s
Test Summary: | Pass  Total  Time
Open_path_02  |    2      2  0.0s
Test Summary: | Pass  Total  Time
Open_path_03  |    5      5  0.0s
Test Summary: | Pass  Total  Time
Open_path_04  |    6      6  0.2s
ERROR: LoadError: BoundsError: attempt to access Tuple{} at index [1]
Stacktrace:
  [1] getindex(t::Tuple, i::Int64)
    @ Base ./tuple.jl:33
  [2] find_namedarray(args::Tuple{})
    @ NamedArrays ~/.julia/packages/NamedArrays/3lDuX/src/keepnames.jl:61
  [3] find_namedarray(::Tuple{}, rest::Tuple{})
    @ NamedArrays ~/.julia/packages/NamedArrays/3lDuX/src/keepnames.jl:65
  [4] find_namedarray(args::Tuple{Base.Broadcast.Extruded{NamedVector{Int64, Vector{Int64}, Tuple{OrderedDict{Symbol, Int64}}}, Tuple{Bool}, Tuple{Int64}}})
    @ NamedArrays ~/.julia/packages/NamedArrays/3lDuX/src/keepnames.jl:61
  [5] find_namedarray(bc::Base.Broadcast.Broadcasted{Base.Broadcast.ArrayStyle{NamedArray}, Tuple{Base.OneTo{Int64}}, StructuralCausalModels.var"#update_21##0#update_21##1", Tuple{Base.Broadcast.Extruded{NamedVector{Int64, Vector{Int64}, Tuple{OrderedDict{Symbol, Int64}}}, Tuple{Bool}, Tuple{Int64}}}})
    @ NamedArrays ~/.julia/packages/NamedArrays/3lDuX/src/keepnames.jl:59
  [6] similar(bc::Base.Broadcast.Broadcasted{Base.Broadcast.ArrayStyle{NamedArray}, Tuple{Base.OneTo{Int64}}, StructuralCausalModels.var"#update_21##0#update_21##1", Tuple{Base.Broadcast.Extruded{NamedVector{Int64, Vector{Int64}, Tuple{OrderedDict{Symbol, Int64}}}, Tuple{Bool}, Tuple{Int64}}}}, ::Type{Bool})
    @ NamedArrays ~/.julia/packages/NamedArrays/3lDuX/src/keepnames.jl:55
  [7] copy
    @ ./broadcast.jl:936 [inlined]
  [8] materialize
    @ ./broadcast.jl:896 [inlined]
  [9] findall(testf::StructuralCausalModels.var"#update_21##0#update_21##1", A::NamedVector{Int64, Vector{Int64}, Tuple{OrderedDict{Symbol, Int64}}})
    @ Base ./array.jl:2723
 [10] update_21(ar::NamedMatrix{Int64, Matrix{Int64}, Tuple{OrderedDict{Symbol, Int64}, OrderedDict{Symbol, Int64}}}, marg_vars::Vector{Symbol}, debug::Bool)
    @ StructuralCausalModels ~/.julia/packages/StructuralCausalModels/n2K8B/src/methods/graph_utils.jl:34
 [11] update_21(ar::NamedMatrix{Int64, Matrix{Int64}, Tuple{OrderedDict{Symbol, Int64}, OrderedDict{Symbol, Int64}}}, marg_vars::Vector{Symbol})
    @ StructuralCausalModels ~/.julia/packages/StructuralCausalModels/n2K8B/src/methods/graph_utils.jl:22
 [12] ancestral_graph(amat::NamedMatrix{Int64, Transpose{Int64, Matrix{Int64}}, Tuple{OrderedDict{Symbol, Int64}, OrderedDict{Symbol, Int64}}}; m::Vector{Symbol}, c::Vector{Symbol})
    @ StructuralCausalModels ~/.julia/packages/StructuralCausalModels/n2K8B/src/methods/ancestral_graph.jl:93
 [13] ancestral_graph(d::DAG; m::Vector{Symbol}, c::Vector{Symbol})
    @ StructuralCausalModels ~/.julia/packages/StructuralCausalModels/n2K8B/src/methods/ancestral_graph.jl:158
 [14] top-level scope
    @ ~/.julia/packages/StructuralCausalModels/n2K8B/test/test_ancestral_graph.jl:37
 [15] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:312
 [16] top-level scope
    @ ~/.julia/packages/StructuralCausalModels/n2K8B/test/runtests.jl:25
 [17] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:312
 [18] top-level scope
    @ none:6
 [19] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [20] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:286
 [21] _start()
    @ Base ./client.jl:553
in expression starting at /home/pkgeval/.julia/packages/StructuralCausalModels/n2K8B/test/test_ancestral_graph.jl:37
in expression starting at /home/pkgeval/.julia/packages/StructuralCausalModels/n2K8B/test/runtests.jl:25

Testing failed after 113.97s

ERROR: LoadError: Package StructuralCausalModels errored during testing
Stacktrace:
  [1] pkgerror(::String, ::Vararg{String})
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68
  [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2661
  [3] test
    @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2510 [inlined]
  [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:538
  [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:168
  [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156
  [7] test
    @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [inlined]
  [8] #test#81
    @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:155 [inlined]
  [9] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:219
 [10] include(mod::Module, _path::String)
    @ Base ./Base.jl:311
 [11] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:320
 [12] _start()
    @ Base ./client.jl:553
in expression starting at /PkgEval.jl/scripts/evaluate.jl:210

PkgEval failed after 411.49s: package tests unexpectedly errored