Package evaluation of Stheno on Julia 1.13.0-DEV.896 (efa4faf9a4*) started at 2025-07-25T14:24:22.835 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.24s ################################################################################ # Installation # Installing Stheno... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [8188c328] + Stheno v0.8.2 Updating `~/.julia/environments/v1.13/Manifest.toml` [99985d1d] + AbstractGPs v0.5.24 [66dad0bd] + AliasTables v1.1.3 [4c555306] + ArrayLayouts v1.11.2 ⌅ [8e7c35d0] + BlockArrays v0.16.43 [d360d2e6] + ChainRulesCore v1.25.2 [34da2185] + Compat v4.17.0 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.13.0 [d9f16b24] + Functors v0.5.2 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.1 [ec8451be] + KernelFunctions v0.10.65 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [90137ffa] + StaticArrays v1.9.14 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [4c63d2b9] + StatsFuns v1.5.0 [8188c328] + Stheno v0.8.2 [62fd8b95] + TensorCore v0.1.1 [700de1a5] + ZygoteRules v0.2.7 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.13.1+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.81s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 34.71s ################################################################################ # Testing # Testing Stheno Status `/tmp/jl_W1pJDz/Project.toml` ⌅ [e30172f5] Documenter v0.27.25 [26cc04aa] FiniteDifferences v0.12.32 [10745b16] Statistics v1.11.1 [8188c328] Stheno v0.8.2 [a759f4b9] TimerOutputs v0.5.29 ⌅ [e88e6eb3] Zygote v0.6.77 [37e2e46d] LinearAlgebra v1.13.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_W1pJDz/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [99985d1d] AbstractGPs v0.5.24 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4c555306] ArrayLayouts v1.11.2 [a9b6321e] Atomix v1.1.1 ⌅ [8e7c35d0] BlockArrays v0.16.43 [fa961155] CEnum v0.5.0 [082447d4] ChainRules v1.72.5 [d360d2e6] ChainRulesCore v1.25.2 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.17.0 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 ⌅ [e30172f5] Documenter v0.27.25 [e2ba6199] ExprTools v0.1.10 [1a297f60] FillArrays v1.13.0 [26cc04aa] FiniteDifferences v0.12.32 [f6369f11] ForwardDiff v1.0.1 [d9f16b24] Functors v0.5.2 [0c68f7d7] GPUArrays v11.2.3 [46192b85] GPUArraysCore v0.2.0 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [b5f81e59] IOCapture v0.2.5 [7869d1d1] IRTools v0.4.15 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v0.21.4 [63c18a36] KernelAbstractions v0.9.38 [ec8451be] KernelFunctions v0.10.65 [929cbde3] LLVM v9.4.2 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [69de0a69] Parsers v2.8.3 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [708f8203] Richardson v1.4.2 [79098fc4] Rmath v0.8.0 [7e506255] ScopedValues v1.4.0 [a2af1166] SortingAlgorithms v1.2.1 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.5.1 [90137ffa] StaticArrays v1.9.14 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.5 [4c63d2b9] StatsFuns v1.5.0 [8188c328] Stheno v0.8.2 [09ab397b] StructArrays v0.7.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [a759f4b9] TimerOutputs v0.5.29 [013be700] UnsafeAtomics v0.3.0 ⌅ [e88e6eb3] Zygote v0.6.77 [700de1a5] ZygoteRules v0.2.7 [dad2f222] LLVMExtra_jll v0.0.37+2 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.14.1+1 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.7.15 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.1+0 [efcefdf7] PCRE2_jll v10.45.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 2148.0 ms ✓ StructArrays → StructArraysGPUArraysCoreExt 54621.0 ms ✓ Zygote 2 dependencies successfully precompiled in 62 seconds. 103 already precompiled. Precompiling packages... 7307.2 ms ✓ StructArrays → StructArraysGPUArraysCoreExt 6450.0 ms ✓ Zygote → ZygoteDistancesExt 2 dependencies successfully precompiled in 15 seconds. 108 already precompiled. WARNING: Method definition zero(KernelFunctions.ColVecs{T, TX, S} where S where TX<:AbstractArray{T, 2} where T) in module KernelFunctions at /home/pkgeval/.julia/packages/KernelFunctions/A0P7n/src/utils.jl:96 overwritten in module Main at /home/pkgeval/.julia/packages/Stheno/ZSwgx/test/test_util.jl:54. gp: affine_transformations: doctests WARNING: Detected access to binding `Stheno.##docmeta#284` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter.Utilities ~/.julia/packages/Documenter/bYYzK/src/Utilities/Utilities.jl:822 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. [ Info: Skipped ExpandTemplates step (doctest only). [ Info: Skipped CrossReferences step (doctest only). [ Info: Skipped CheckDocument step (doctest only). [ Info: Skipped Populate step (doctest only). [ Info: Skipped RenderDocument step (doctest only). Test Summary: | Pass Total Time Stheno | 1179 1179 18m31.7s ───────────────────────────────────────────────────────────────────────────────────────────────────── Time Allocations ─────────────────────── ──────────────────────── Tot / % measured: 1129s / 98.4% 26.6GiB / 99.3% Section ncalls time %tot avg alloc %tot avg ───────────────────────────────────────────────────────────────────────────────────────────────────── affine_transformations 1 713s 64.2% 713s 19.2GiB 73.0% 19.2GiB addition 1 421s 37.9% 421s 11.9GiB 45.1% 11.9GiB Standardised Tests (correlated sum) 1 235s 21.1% 235s 6.59GiB 25.0% 6.59GiB adj_ad 9 23.4s 2.1% 2.60s 914MiB 3.4% 102MiB adj_fd 9 8.96s 0.8% 995ms 332MiB 1.2% 36.9MiB Standardised Tests (independent sum) 1 138s 12.4% 138s 4.99GiB 18.9% 4.99GiB adj_ad 9 24.2s 2.2% 2.69s 1.04GiB 3.9% 118MiB adj_fd 9 10.7s 1.0% 1.19s 357MiB 1.3% 39.6MiB Correlated GPs 1 45.5s 4.1% 45.5s 284MiB 1.1% 284MiB Consistency Tests 1 19.3s 1.7% 19.3s 120MiB 0.4% 120MiB Verify mean / kernel numerically 1 3.17s 0.3% 3.17s 45.0MiB 0.2% 45.0MiB Consistency Tests 1 1.91s 0.2% 1.91s 15.6MiB 0.1% 15.6MiB product 1 141s 12.7% 141s 3.63GiB 13.8% 3.63GiB multiply by function 1 82.1s 7.4% 82.1s 1.98GiB 7.5% 1.98GiB Diff Tests 1 42.6s 3.8% 42.6s 1.43GiB 5.4% 1.43GiB adj_ad 9 15.2s 1.4% 1.69s 745MiB 2.8% 82.8MiB adj_fd 9 5.96s 0.5% 662ms 130MiB 0.5% 14.4MiB Consistency Tests 1 5.88s 0.5% 5.88s 110MiB 0.4% 110MiB multiply by constant 1 59.0s 5.3% 59.0s 1.65GiB 6.3% 1.65GiB Diff Tests 1 45.8s 4.1% 45.8s 1.60GiB 6.1% 1.60GiB adj_ad 9 14.0s 1.3% 1.56s 663MiB 2.5% 73.7MiB adj_fd 9 10.4s 0.9% 1.16s 330MiB 1.2% 36.6MiB Consistency Tests 1 4.12s 0.4% 4.12s 20.9MiB 0.1% 20.9MiB GP mul errors 1 8.90ms 0.0% 8.90ms 43.4KiB 0.0% 43.4KiB compose 1 68.3s 6.1% 68.3s 2.08GiB 7.9% 2.08GiB general 1 47.5s 4.3% 47.5s 1.35GiB 5.1% 1.35GiB Diff Tests 1 41.9s 3.8% 41.9s 1.29GiB 4.9% 1.29GiB adj_ad 9 12.8s 1.2% 1.42s 588MiB 2.2% 65.4MiB adj_fd 9 5.35s 0.5% 594ms 114MiB 0.4% 12.7MiB Consistency Tests 1 4.38s 0.4% 4.38s 41.2MiB 0.2% 41.2MiB Stretch 1 16.8s 1.5% 16.8s 636MiB 2.4% 636MiB scalar stretch 1 16.2s 1.5% 16.2s 622MiB 2.3% 622MiB scalar input 1 15.7s 1.4% 15.7s 618MiB 2.3% 618MiB adj_fd 9 5.94s 0.5% 660ms 298MiB 1.1% 33.1MiB adj_ad 9 1.94s 0.2% 216ms 104MiB 0.4% 11.5MiB vector input 1 544ms 0.0% 544ms 3.57MiB 0.0% 3.57MiB Vector stretch 1 452ms 0.0% 452ms 10.8MiB 0.0% 10.8MiB Matrix stretch 1 94.8ms 0.0% 94.8ms 3.36MiB 0.0% 3.36MiB Shift 1 2.08s 0.2% 2.08s 43.1MiB 0.2% 43.1MiB Shift{Vector{Float64}} 1 1.12s 0.1% 1.12s 15.4MiB 0.1% 15.4MiB Shift{Float64} 1 961ms 0.1% 961ms 27.7MiB 0.1% 27.7MiB Select 1 1.10s 0.1% 1.10s 32.9MiB 0.1% 32.9MiB evaluation 1 501ms 0.0% 501ms 21.8MiB 0.1% 21.8MiB idx isa Vector 1 368ms 0.0% 368ms 8.15MiB 0.0% 8.15MiB idx isa Integer 1 230ms 0.0% 230ms 2.98MiB 0.0% 2.98MiB Periodic 1 841ms 0.1% 841ms 38.3MiB 0.1% 38.3MiB cross 1 28.9s 2.6% 28.9s 1.02GiB 3.9% 1.02GiB block arrays 1 16.7s 1.5% 16.7s 688MiB 2.5% 688MiB Stheno._collect ∘ _mortar 1 13.9s 1.3% 13.9s 582MiB 2.2% 582MiB BlockMatrix 1 7.56s 0.7% 7.56s 331MiB 1.2% 331MiB adj_fd 1 1.35s 0.1% 1.35s 111MiB 0.4% 111MiB adj_ad 1 83.6ms 0.0% 83.6ms 4.08MiB 0.0% 4.08MiB BlockVector 1 6.38s 0.6% 6.38s 251MiB 0.9% 251MiB adj_fd 1 799ms 0.1% 799ms 12.9MiB 0.0% 12.9MiB adj_ad 1 506ms 0.0% 506ms 33.4MiB 0.1% 33.4MiB fdm stuff 1 2.71s 0.2% 2.71s 106MiB 0.4% 106MiB Correctness tests 1 7.87s 0.7% 7.87s 298MiB 1.1% 298MiB Standardised Tests 1 4.42s 0.4% 4.42s 61.2MiB 0.2% 61.2MiB gp 1 189s 17.0% 189s 3.72GiB 14.1% 3.72GiB sparse gp 1 22.2s 2.0% 22.2s 392MiB 1.5% 392MiB SparseFiniteGP inference 1 17.1s 1.5% 17.1s 290MiB 1.1% 290MiB SparseFiniteGP methods 1 4.66s 0.4% 4.66s 97.9MiB 0.4% 97.9MiB SparseFiniteGP Constructors 1 422ms 0.0% 422ms 4.22MiB 0.0% 4.22MiB adj_ad 2 20.0s 1.8% 10.0s 721MiB 2.7% 361MiB gp 1 17.1s 1.5% 17.1s 276MiB 1.0% 276MiB GP 1 16.7s 1.5% 16.7s 273MiB 1.0% 273MiB independent GPs 1 333ms 0.0% 333ms 2.81MiB 0.0% 2.81MiB wrapped AbstractGP 1 13.6ms 0.0% 13.6ms 310KiB 0.0% 310KiB adj_fd 2 2.55s 0.2% 1.27s 43.6MiB 0.2% 21.8MiB derived_gp 1 174μs 0.0% 174μs 1.61KiB 0.0% 1.61KiB gaussian_process_probabilistic_programme 1 134s 12.1% 134s 2.02GiB 7.6% 2.02GiB Zygote 1 26.6s 2.4% 26.6s 920MiB 3.4% 920MiB nested gppp 1 15.7s 1.4% 15.7s 83.0MiB 0.3% 83.0MiB External Consistency 1 13.1s 1.2% 13.1s 68.6MiB 0.3% 68.6MiB split 1 642ms 0.1% 642ms 12.4MiB 0.0% 12.4MiB gppp macro 1 54.5ms 0.0% 54.5ms 618KiB 0.0% 618KiB doctests 1 67.8s 6.1% 67.8s 1.18GiB 4.5% 1.18GiB BlockData 1 6.66s 0.6% 6.66s 227MiB 0.8% 227MiB vcat(::GPPPInput...) 1 1.97s 0.2% 1.97s 95.2MiB 0.4% 95.2MiB ───────────────────────────────────────────────────────────────────────────────────────────────────── Testing Stheno tests passed Testing completed after 1214.88s PkgEval succeeded after 1287.61s