Package evaluation of FlashWeave on Julia 1.13.0-DEV.896 (efa4faf9a4*) started at 2025-07-25T15:57:11.992 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 13.05s ################################################################################ # Installation # Installing FlashWeave... Resolving package versions... Installed libaec_jll ────────────── v1.1.3+0 Installed HypergeometricFunctions ─ v0.3.28 Installed MacroTools ────────────── v0.5.16 Installed DelimitedFiles ────────── v1.9.1 Installed Rmath_jll ─────────────── v0.5.1+0 Installed MPICH_jll ─────────────── v4.3.1+0 Installed FillArrays ────────────── v1.13.0 Installed ArnoldiMethod ─────────── v0.4.0 Installed AliasTables ───────────── v1.1.3 Installed DataStructures ────────── v0.18.22 Installed JLD2 ──────────────────── v0.4.54 Installed StatsBase ─────────────── v0.33.21 Installed MicrosoftMPI_jll ──────── v10.1.4+3 Installed DataAPI ───────────────── v1.16.0 Installed Compat ────────────────── v4.17.0 Installed OrderedCollections ────── v1.8.1 Installed Statistics ────────────── v1.11.1 Installed TranscodingStreams ────── v0.11.3 Installed StatsAPI ──────────────── v1.7.1 Installed StaticArraysCore ──────── v1.4.3 Installed IrrationalConstants ───── v0.2.4 Installed PrecompileTools ───────── v1.3.2 Installed FileIO ────────────────── v1.17.0 Installed Combinatorics ─────────── v1.0.3 Installed Requires ──────────────── v1.3.1 Installed SimpleWeightedGraphs ──── v1.5.0 Installed StaticArrays ──────────── v1.9.14 Installed QuadGK ────────────────── v2.11.2 Installed OpenSpecFun_jll ───────── v0.5.6+0 Installed HDF5_jll ──────────────── v1.14.6+0 Installed OpenMPI_jll ───────────── v5.0.8+0 Installed LogExpFunctions ───────── v0.3.29 Installed SimpleTraits ──────────── v0.9.4 Installed JSON ──────────────────── v0.21.4 Installed Hwloc_jll ─────────────── v2.12.1+0 Installed Distributions ─────────── v0.25.120 Installed Parsers ───────────────── v2.8.3 Installed FlashWeave ────────────── v0.19.2 Installed PtrArrays ─────────────── v1.3.0 Installed StatsFuns ─────────────── v1.5.0 Installed SpecialFunctions ──────── v2.5.1 Installed Rmath ─────────────────── v0.8.0 Installed Reexport ──────────────── v1.2.2 Installed MPIPreferences ────────── v0.1.11 Installed Missings ──────────────── v1.2.0 Installed JLLWrappers ───────────── v1.7.1 Installed Preferences ───────────── v1.4.3 Installed PDMats ────────────────── v0.11.35 Installed MPItrampoline_jll ─────── v5.5.4+0 Installed HDF5 ──────────────────── v0.16.16 Installed SortingAlgorithms ─────── v1.2.1 Installed Inflate ───────────────── v0.1.5 Installed DocStringExtensions ───── v0.9.5 Installed Graphs ────────────────── v1.13.0 Installing 6 artifacts Installed artifact OpenSpecFun 194.9 KiB Installed artifact libaec 96.2 KiB Installed artifact Rmath 121.9 KiB Installed artifact HDF5 5.7 MiB Installed artifact Hwloc 3.5 MiB Installed artifact MPICH 3.3 MiB Updating `~/.julia/environments/v1.13/Project.toml` [2be3f83a] + FlashWeave v0.19.2 Updating `~/.julia/environments/v1.13/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [861a8166] + Combinatorics v1.0.3 [34da2185] + Compat v4.17.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [8bb1440f] + DelimitedFiles v1.9.1 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [5789e2e9] + FileIO v1.17.0 [1a297f60] + FillArrays v1.13.0 [2be3f83a] + FlashWeave v0.19.2 [86223c79] + Graphs v1.13.0 ⌅ [f67ccb44] + HDF5 v0.16.16 [34004b35] + HypergeometricFunctions v0.3.28 [d25df0c9] + Inflate v0.1.5 [92d709cd] + IrrationalConstants v0.2.4 ⌅ [033835bb] + JLD2 v0.4.54 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v0.21.4 [2ab3a3ac] + LogExpFunctions v0.3.29 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [69de0a69] + Parsers v2.8.3 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [699a6c99] + SimpleTraits v0.9.4 [47aef6b3] + SimpleWeightedGraphs v1.5.0 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [90137ffa] + StaticArrays v1.9.14 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 ⌅ [2913bbd2] + StatsBase v0.33.21 [4c63d2b9] + StatsFuns v1.5.0 [3bb67fe8] + TranscodingStreams v0.11.3 [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.1+0 [7cb0a576] + MPICH_jll v4.3.1+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.8+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [477f73a3] + libaec_jll v1.1.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.14.1+1 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.7.15 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.5.1+0 [efcefdf7] + PCRE2_jll v10.45.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Building HDF5 → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/114e20044677badbc631ee6fdc80a67920561a29/build.log` Installation completed after 19.46s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 3647.1 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 26 already precompiled. Precompiling package dependencies... ERROR: LoadError: The following 1 direct dependency failed to precompile: JLD2 Failed to precompile JLD2 [033835bb-8acc-5ee8-8aae-3f567f8a3819] to "/home/pkgeval/.julia/compiled/v1.13/JLD2/jl_61wc07" (ProcessExited(1)). Error encountered while load FileIO.File{FileIO.DataFormat{:JLD2}, String}("/tmp/jl_cAooNH"). Fatal error: ERROR: LoadError: ConcurrencyViolationError("deadlock detected in loading JLD2 using JLD2") Stacktrace: [1] canstart_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) @ Base ./loading.jl:2184 [2] start_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) @ Base ./loading.jl:2192 [3] _require_prelocked(uuidkey::Base.PkgId, env::Nothing) @ Base ./loading.jl:2463 [4] _require_prelocked @ ./loading.jl:2462 [inlined] [5] macro expansion @ ./lock.jl:376 [inlined] [6] __require(uuidkey::Base.PkgId) @ Base ./loading.jl:2460 [7] require @ ./loading.jl:2458 [inlined] [8] #37 @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:203 [inlined] [9] lock(f::FileIO.var"#37#38"{Base.PkgId}, l::ReentrantLock) @ Base ./lock.jl:335 [10] action(::Symbol, ::Vector{Union{Base.PkgId, Module}}, ::FileIO.Formatted; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:203 [11] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:196 [inlined] [12] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:185 [inlined] [13] load(::String; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:113 [14] load @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:109 [inlined] [15] #111 @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:26 [inlined] [16] mktemp(fn::JLD2.var"#111#112"{Symbol, Vector{Float64}, NTuple{5, Int64}, String, Dict{String, Int64}, Matrix{ComplexF64}, Vector{Float64}, Float64, Int64}, parent::String) @ Base.Filesystem ./file.jl:870 [17] mktemp(fn::Function) @ Base.Filesystem ./file.jl:868 [18] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:15 [inlined] [19] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined] [20] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:14 [inlined] [21] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:121 [inlined] [22] top-level scope @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:118 Stacktrace: [1] handle_error(e::ConcurrencyViolationError, q::Base.PkgId, bt::Vector{Union{Ptr{Nothing}, Base.InterpreterIP}}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/error_handling.jl:71 [2] handle_exceptions(exceptions::Vector{Tuple{Any, Union{Base.PkgId, Module}, Vector}}, action::String) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/error_handling.jl:66 [3] action(::Symbol, ::Vector{Union{Base.PkgId, Module}}, ::FileIO.Formatted; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:228 [4] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:196 [inlined] [5] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:185 [inlined] [6] load(::String; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:113 [7] load @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:109 [inlined] [8] #111 @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:26 [inlined] [9] mktemp(fn::JLD2.var"#111#112"{Symbol, Vector{Float64}, NTuple{5, Int64}, String, Dict{String, Int64}, Matrix{ComplexF64}, Vector{Float64}, Float64, Int64}, parent::String) @ Base.Filesystem ./file.jl:870 [10] mktemp(fn::Function) @ Base.Filesystem ./file.jl:868 [11] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:15 [inlined] [12] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined] [13] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:14 [inlined] [14] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:121 [inlined] [15] top-level scope @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:118 [16] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [17] IncludeInto @ ./Base.jl:313 [inlined] [18] top-level scope @ ~/.julia/packages/JLD2/wLPAN/src/JLD2.jl:518 [19] include(mod::Module, _path::String) @ Base ./Base.jl:311 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3002 [21] top-level scope @ stdin:5 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2848 [24] include_string @ ./loading.jl:2858 [inlined] [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:318 [26] _start() @ Base ./client.jl:553 in expression starting at /home/pkgeval/.julia/packages/JLD2/wLPAN/src/precompile.jl:3 in expression starting at /home/pkgeval/.julia/packages/JLD2/wLPAN/src/JLD2.jl:1 in expression starting at stdin: in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 268.61s ################################################################################ # Testing # Testing FlashWeave Status `/tmp/jl_KTUnQ2/Project.toml` [861a8166] Combinatorics v1.0.3 [864edb3b] DataStructures v0.18.22 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.120 [5789e2e9] FileIO v1.17.0 [2be3f83a] FlashWeave v0.19.2 [86223c79] Graphs v1.13.0 ⌅ [f67ccb44] HDF5 v0.16.16 ⌅ [033835bb] JLD2 v0.4.54 [682c06a0] JSON v0.21.4 [47aef6b3] SimpleWeightedGraphs v1.5.0 [860ef19b] StableRNGs v1.0.3 [10745b16] Statistics v1.11.1 ⌅ [2913bbd2] StatsBase v0.33.21 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [9a3f8284] Random v1.11.0 [1a1011a3] SharedArrays v1.11.0 [2f01184e] SparseArrays v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_KTUnQ2/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [ec485272] ArnoldiMethod v0.4.0 [861a8166] Combinatorics v1.0.3 [34da2185] Compat v4.17.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 [5789e2e9] FileIO v1.17.0 [1a297f60] FillArrays v1.13.0 [2be3f83a] FlashWeave v0.19.2 [86223c79] Graphs v1.13.0 ⌅ [f67ccb44] HDF5 v0.16.16 [34004b35] HypergeometricFunctions v0.3.28 [d25df0c9] Inflate v0.1.5 [92d709cd] IrrationalConstants v0.2.4 ⌅ [033835bb] JLD2 v0.4.54 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v0.21.4 [2ab3a3ac] LogExpFunctions v0.3.29 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [69de0a69] Parsers v2.8.3 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [699a6c99] SimpleTraits v0.9.4 [47aef6b3] SimpleWeightedGraphs v1.5.0 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.1 [860ef19b] StableRNGs v1.0.3 [90137ffa] StaticArrays v1.9.14 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 ⌅ [2913bbd2] StatsBase v0.33.21 [4c63d2b9] StatsFuns v1.5.0 [3bb67fe8] TranscodingStreams v0.11.3 [0234f1f7] HDF5_jll v1.14.6+0 [e33a78d0] Hwloc_jll v2.12.1+0 [7cb0a576] MPICH_jll v4.3.1+0 [f1f71cc9] MPItrampoline_jll v5.5.4+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [fe0851c0] OpenMPI_jll v5.0.8+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [477f73a3] libaec_jll v1.1.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.14.1+1 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.7.15 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.1+0 [efcefdf7] PCRE2_jll v10.45.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Preparing tests Test Summary: | Pass Total Time all modules in test set | 1 1 0.5s Testing io.jl Test Summary: | Pass Total Time networks | 4 4 8.4s Test Summary: | Pass Total Time table data | 20 20 19.9s Test Summary: | Pass Total Time transposed | 4 4 0.3s Test Summary: | Pass Total Time string factors | 4 4 1.1s Test Summary: | Pass Total Time numeric IDs | 2 2 1.2s Testing preprocessing.jl ┌ Warning: Adaptive CLR is inefficient with sparse data, using dense format for normalization └ @ FlashWeave ~/.julia/packages/FlashWeave/j91Ng/src/preprocessing.jl:542 ┌ Warning: adaptive pseudo-counts for 1 samples were lower than machine precision due to insufficient counts, removing them └ @ FlashWeave ~/.julia/packages/FlashWeave/j91Ng/src/preprocessing.jl:125 Test Summary: | Pass Total Time clr_adapt eps | 2 2 20.4s ┌ Warning: Adaptive CLR is inefficient with sparse data, using dense format for normalization └ @ FlashWeave ~/.julia/packages/FlashWeave/j91Ng/src/preprocessing.jl:542 ┌ Warning: Adaptive CLR is inefficient with sparse data, using dense format for normalization └ @ FlashWeave ~/.julia/packages/FlashWeave/j91Ng/src/preprocessing.jl:542 ┌ Warning: Adaptive CLR is inefficient with sparse data, using dense format for normalization └ @ FlashWeave ~/.julia/packages/FlashWeave/j91Ng/src/preprocessing.jl:542 ┌ Warning: Adaptive CLR is inefficient with sparse data, using dense format for normalization └ @ FlashWeave ~/.julia/packages/FlashWeave/j91Ng/src/preprocessing.jl:542 Test Summary: | Pass Total Time norm per test type | 20 20 40.8s ┌ Warning: Adaptive CLR is inefficient with sparse data, using dense format for normalization └ @ FlashWeave ~/.julia/packages/FlashWeave/j91Ng/src/preprocessing.jl:542 Test Summary: | Pass Total Time filter data | 12 12 4.2s Test Summary: | Pass Total Time mi_nz fits fz_nz | 1 1 11.0s ┌ Warning: Skipping one-hot encoding, only experts should choose this option └ @ FlashWeave ~/.julia/packages/FlashWeave/j91Ng/src/preprocessing.jl:396 ┌ Warning: Skipping one-hot encoding, only experts should choose this option └ @ FlashWeave ~/.julia/packages/FlashWeave/j91Ng/src/preprocessing.jl:396 ┌ Warning: Skipping one-hot encoding, only experts should choose this option └ @ FlashWeave ~/.julia/packages/FlashWeave/j91Ng/src/preprocessing.jl:396 ┌ Warning: Skipping one-hot encoding, only experts should choose this option └ @ FlashWeave ~/.julia/packages/FlashWeave/j91Ng/src/preprocessing.jl:396 Test Summary: | Pass Total Time meta data | 18 18 16.0s Testing contingency.jl Test Summary: | Pass Total Time dense | 4 4 3.7s Test Summary: | Pass Total Time sparse | 4 4 2.0s Test Summary: | Pass Total Time sparse_ctab all-zero Y /w Nz | 1 1 2.1s Testing statfuns.jl Test Summary: | Pass Total Time correlation | 6 6 6.3s Test Summary: | Pass Total Time mutual information | 4 4 2.3s Test Summary: | Pass Total Time FDR correction | 2 2 1.6s Testing tests.jl uni: Error During Test at /home/pkgeval/.julia/packages/FlashWeave/j91Ng/test/tests.jl:46 Got exception outside of a @test return type Vector{TestResult} does not match inferred return type Any Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] top-level scope @ ~/.julia/packages/FlashWeave/j91Ng/test/tests.jl:44 [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [4] macro expansion @ ~/.julia/packages/FlashWeave/j91Ng/test/tests.jl:48 [inlined] [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [6] macro expansion @ ~/.julia/packages/FlashWeave/j91Ng/test/tests.jl:61 [inlined] [7] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [8] top-level scope @ ~/.julia/packages/FlashWeave/j91Ng/test/runtests.jl:21 [9] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [10] top-level scope @ none:6 [11] eval(m::Module, e::Any) @ Core ./boot.jl:489 [12] exec_options(opts::Base.JLOptions) @ Base ./client.jl:286 [13] _start() @ Base ./client.jl:553 Test Summary: | Pass Error Total Time mi | 2 1 3 6.2s uni | 1 1 4.0s condZ1 | 1 1 1.5s condZ3 | 1 1 0.7s RNG of the outermost testset: Random.Xoshiro(0xd779ba05e8049402, 0x09600d60c816c944, 0x91445a463d9f20d2, 0xcb9a875e92b4fa1c, 0x5b29591d77576aac) ERROR: LoadError: Some tests did not pass: 2 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/FlashWeave/j91Ng/test/tests.jl:41 in expression starting at /home/pkgeval/.julia/packages/FlashWeave/j91Ng/test/runtests.jl:16 Testing failed after 204.03s ERROR: LoadError: Package FlashWeave errored during testing Stacktrace: [1] pkgerror(::String, ::Vararg{String}) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2661 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2510 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:538 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:168 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [7] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:155 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:311 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:320 [12] _start() @ Base ./client.jl:553 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 541.61s: package fails to precompile