Package evaluation of BioSequences on Julia 1.13.0-DEV.896 (efa4faf9a4*) started at 2025-07-25T11:03:03.748 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 14.35s ################################################################################ # Installation # Installing BioSequences... Resolving package versions... Installed Preferences ───── v1.4.3 Installed PrecompileTools ─ v1.3.2 Installed Twiddle ───────── v1.1.2 Installed BioSymbols ────── v5.2.0 Installed BioSequences ──── v3.5.0 Updating `~/.julia/environments/v1.13/Project.toml` [7e6ae17a] + BioSequences v3.5.0 Updating `~/.julia/environments/v1.13/Manifest.toml` [7e6ae17a] + BioSequences v3.5.0 [3c28c6f8] + BioSymbols v5.2.0 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [7200193e] + Twiddle v1.1.2 [ade2ca70] + Dates v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [fa267f1f] + TOML v1.0.3 [4ec0a83e] + Unicode v1.11.0 Installation completed after 4.22s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 3132.3 ms ✓ TestEnv 1 dependency successfully precompiled in 4 seconds. 26 already precompiled. Precompiling package dependencies... Precompilation completed after 77.3s ################################################################################ # Testing # Testing BioSequences Status `/tmp/jl_tLqv9k/Project.toml` [7e6ae17a] BioSequences v3.5.0 [3c28c6f8] BioSymbols v5.2.0 [aea7be01] PrecompileTools v1.3.2 [860ef19b] StableRNGs v1.0.3 [2913bbd2] StatsBase v0.34.5 [7200193e] Twiddle v1.1.2 [ddb6d928] YAML v0.4.14 [37e2e46d] LinearAlgebra v1.13.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_tLqv9k/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [7e6ae17a] BioSequences v3.5.0 [3c28c6f8] BioSymbols v5.2.0 [34da2185] Compat v4.17.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [ffbed154] DocStringExtensions v0.9.5 [92d709cd] IrrationalConstants v0.2.4 [692b3bcd] JLLWrappers v1.7.1 [2ab3a3ac] LogExpFunctions v0.3.29 [e1d29d7a] Missings v1.2.0 [bac558e1] OrderedCollections v1.8.1 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [43287f4e] PtrArrays v1.3.0 [a2af1166] SortingAlgorithms v1.2.1 [860ef19b] StableRNGs v1.0.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.5 [69024149] StringEncodings v0.3.7 [7200193e] Twiddle v1.1.2 [ddb6d928] YAML v0.4.14 [94ce4f54] Libiconv_jll v1.18.0+0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [4536629a] OpenBLAS_jll v0.3.29+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [8e850b90] libblastrampoline_jll v5.13.1+0 Testing Running tests... Test Summary: | Pass Total Time Alphabet | 413 413 14.9s Basics: Error During Test at /home/pkgeval/.julia/packages/BioSequences/57xL7/test/biosequences/biosequence.jl:25 Got exception outside of a @test MethodError: no method matching Main.TestBioSequences.SimpleSeq(::Main.TestBioSequences.Unsafe, ::Vector{Any}) The type `Main.TestBioSequences.SimpleSeq` exists, but no method is defined for this combination of argument types when trying to construct it. Closest candidates are: Main.TestBioSequences.SimpleSeq(::Any) @ Main.TestBioSequences ~/.julia/packages/BioSequences/57xL7/test/biosequences/biosequence.jl:10 Main.TestBioSequences.SimpleSeq(::Main.TestBioSequences.Unsafe, !Matched::Vector{UInt64}) @ Main.TestBioSequences ~/.julia/packages/BioSequences/57xL7/test/biosequences/biosequence.jl:7 Main.TestBioSequences.SimpleSeq(!Matched::UndefInitializer, !Matched::Integer) @ Main.TestBioSequences ~/.julia/packages/BioSequences/57xL7/test/biosequences/biosequence.jl:19 Stacktrace: [1] Main.TestBioSequences.SimpleSeq(it::Vector{Any}) @ Main.TestBioSequences ~/.julia/packages/BioSequences/57xL7/test/biosequences/biosequence.jl:11 [2] top-level scope @ ~/.julia/packages/BioSequences/57xL7/test/biosequences/biosequence.jl:26 [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [4] macro expansion @ ~/.julia/packages/BioSequences/57xL7/test/biosequences/biosequence.jl:56 [inlined] [5] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [6] top-level scope @ ~/.julia/packages/BioSequences/57xL7/test/runtests.jl:24 [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [8] macro expansion @ ~/.julia/packages/BioSequences/57xL7/test/runtests.jl:24 [inlined] [9] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [10] top-level scope @ none:6 [11] eval(m::Module, e::Any) @ Core ./boot.jl:489 [12] exec_options(opts::Base.JLOptions) @ Base ./client.jl:286 [13] _start() @ Base ./client.jl:553 Test Summary: | Pass Error Total Time BioSequences | 213 1 214 16.5s Basics | 20 1 21 7.3s Getindex | 26 26 1.4s Setindex! | 33 33 1.9s BitIndex | 5 5 0.0s Convert to String or Vector | 2 2 0.2s Counting | 24 24 0.8s Matches/mismatches | 2 2 0.5s Finding | 14 14 0.3s Equality | 12 12 0.1s Repetitive | 27 27 0.1s Canonical | 10 10 0.3s Ispalindromic | 16 16 0.1s Has ambiguity | 7 7 0.0s Shuffle | 2 2 0.4s Reverse-complement | 5 5 0.6s Ungap | 2 2 0.2s bitreverse | 6 6 0.1s RNG of the outermost testset: Random.Xoshiro(0x24511196125c9102, 0xdf0eadb40ff3fec7, 0x0edc8755f509420e, 0x80636c7a8931c310, 0x8e83b6b9cbc32d0d) ERROR: LoadError: Some tests did not pass: 213 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/BioSequences/57xL7/test/runtests.jl:1 Testing failed after 47.85s ERROR: LoadError: Package BioSequences errored during testing Stacktrace: [1] pkgerror(::String, ::Vararg{String}) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2661 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2510 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:538 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:168 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [7] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:155 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:311 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:320 [12] _start() @ Base ./client.jl:553 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 159.14s: package tests unexpectedly errored