Package evaluation of AtomicStructure on Julia 1.13.0-DEV.896 (efa4faf9a4*) started at 2025-07-25T18:01:44.596 ################################################################################ # Set-up # Set-up completed after 0.38s ################################################################################ # Installation # Installing AtomicStructure... Resolving package versions... Installed MacroTools ────────────────── v0.5.16 Installed CompositionsBase ──────────── v0.1.2 Installed Formatting ────────────────── v0.4.3 Installed DiffResults ───────────────── v1.1.0 Installed CommonSolve ───────────────── v0.2.4 Installed FillArrays ────────────────── v1.13.0 Installed ForwardDiff ───────────────── v0.10.38 Installed DataStructures ────────────── v0.18.22 Installed Adapt ─────────────────────── v4.3.0 Installed QuasiArrays ───────────────── v0.9.8 Installed ConstructionBase ──────────── v1.6.0 Installed HalfIntegers ──────────────── v1.6.0 Installed ArnoldiMethod ─────────────── v0.2.0 Installed StatsBase ─────────────────── v0.34.5 Installed AliasTables ───────────────── v1.1.3 Installed UnicodeFun ────────────────── v0.4.1 Installed Optim ─────────────────────── v1.11.0 Installed ArrayInterface ────────────── v7.10.0 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed OrderedCollections ────────── v1.8.1 Installed Compat ────────────────────── v4.17.0 Installed RecipesBase ───────────────── v1.3.4 Installed Combinatorics ─────────────── v1.0.3 Installed BlockBandedMatrices ───────── v0.12.10 Installed DomainSets ────────────────── v0.6.7 Installed DataAPI ───────────────────── v1.16.0 Installed PositiveFactorizations ────── v0.2.4 Installed DataValueInterfaces ───────── v1.0.0 Installed StatsAPI ──────────────────── v1.7.1 Installed EnergyExpressions ─────────── v0.1.4 Installed Statistics ────────────────── v1.11.1 Installed LazyArrays ────────────────── v1.10.0 Installed PrecompileTools ───────────── v1.3.2 Installed UnitfulAtomic ─────────────── v1.0.0 Installed ProgressMeter ─────────────── v1.10.4 Installed AngularMomentumAlgebra ────── v0.3.2 Installed CommonSubexpressions ──────── v0.3.1 Installed OffsetArrays ──────────────── v1.17.0 Installed AtomicStructure ───────────── v0.1.8 Installed FastGaussQuadrature ───────── v0.5.1 Installed StaticArrays ──────────────── v1.9.14 Installed StaticArraysCore ──────────── v1.4.3 Installed IrrationalConstants ───────── v0.2.4 Installed ContinuumArrays ───────────── v0.12.6 Installed AbstractFFTs ──────────────── v1.5.0 Installed IntegerMathUtils ──────────── v0.1.3 Installed Infinities ────────────────── v0.1.11 Installed StringManipulation ────────── v0.4.1 Installed NaNMath ───────────────────── v1.1.3 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed LogExpFunctions ───────────── v0.3.29 Installed MatrixFactorizations ──────── v2.2.0 Installed Requires ──────────────────── v1.3.1 Installed ArrayLayouts ──────────────── v1.11.2 Installed SolverTraces ──────────────── v0.1.3 Installed Roots ─────────────────────── v2.2.8 Installed DiffRules ─────────────────── v1.15.1 Installed CoulombIntegrals ──────────── v0.1.5 Installed Parameters ────────────────── v0.12.3 Installed FiniteDiff ────────────────── v2.23.1 Installed Unitful ───────────────────── v1.23.1 Installed PrettyTables ──────────────── v2.4.0 Installed Tables ────────────────────── v1.12.1 Installed AtomicLevels ──────────────── v0.1.10 Installed PtrArrays ─────────────────── v1.3.0 Installed BlockArrays ───────────────── v0.16.43 Installed NLSolversBase ─────────────── v7.8.3 Installed Reexport ──────────────────── v1.2.2 Installed InverseFunctions ──────────── v0.1.17 Installed IntervalSets ──────────────── v0.7.11 Installed SpecialFunctions ──────────── v2.5.1 Installed Setfield ──────────────────── v1.1.2 Installed BandedMatrices ────────────── v0.17.38 Installed CompositeTypes ────────────── v0.1.4 Installed JLLWrappers ───────────────── v1.7.1 Installed TableTraits ───────────────── v1.0.1 Installed LaTeXStrings ──────────────── v1.4.0 Installed Missings ──────────────────── v1.2.0 Installed IterativeSolvers ──────────── v0.9.4 Installed LineSearches ──────────────── v7.4.0 Installed Preferences ───────────────── v1.4.3 Installed LRUCache ──────────────────── v1.6.2 Installed Primes ────────────────────── v0.5.7 Installed Crayons ───────────────────── v4.1.1 Installed RationalRoots ─────────────── v0.2.1 Installed Format ────────────────────── v1.3.7 Installed WignerSymbols ─────────────── v2.0.0 Installed SortingAlgorithms ─────────── v1.2.1 Installed CompactBases ──────────────── v0.3.14 Installed UnPack ────────────────────── v1.0.2 Installed InfiniteArrays ────────────── v0.12.15 Installed DocStringExtensions ───────── v0.9.5 Installed Accessors ─────────────────── v0.1.42 Installing 1 artifacts Installed artifact OpenSpecFun 194.9 KiB Updating `~/.julia/environments/v1.13/Project.toml` [e24b7630] + AtomicStructure v0.1.8 Updating `~/.julia/environments/v1.13/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [0bb1b1ac] + AngularMomentumAlgebra v0.3.2 ⌅ [ec485272] + ArnoldiMethod v0.2.0 ⌃ [4fba245c] + ArrayInterface v7.10.0 [4c555306] + ArrayLayouts v1.11.2 ⌃ [10933b4c] + AtomicLevels v0.1.10 [e24b7630] + AtomicStructure v0.1.8 ⌅ [aae01518] + BandedMatrices v0.17.38 ⌅ [8e7c35d0] + BlockArrays v0.16.43 ⌅ [ffab5731] + BlockBandedMatrices v0.12.10 [861a8166] + Combinatorics v1.0.3 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [2c0377a8] + CompactBases v0.3.14 [34da2185] + Compat v4.17.0 [b152e2b5] + CompositeTypes v0.1.4 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 ⌅ [7ae1f121] + ContinuumArrays v0.12.6 [42e5845a] + CoulombIntegrals v0.1.5 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [ffbed154] + DocStringExtensions v0.9.5 ⌅ [5b8099bc] + DomainSets v0.6.7 [f4b57a2e] + EnergyExpressions v0.1.4 ⌅ [442a2c76] + FastGaussQuadrature v0.5.1 [1a297f60] + FillArrays v1.13.0 ⌃ [6a86dc24] + FiniteDiff v2.23.1 [1fa38f19] + Format v1.3.7 [59287772] + Formatting v0.4.3 ⌅ [f6369f11] + ForwardDiff v0.10.38 [f0d1745a] + HalfIntegers v1.6.0 ⌅ [4858937d] + InfiniteArrays v0.12.15 [e1ba4f0e] + Infinities v0.1.11 [18e54dd8] + IntegerMathUtils v0.1.3 [8197267c] + IntervalSets v0.7.11 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.4 [42fd0dbc] + IterativeSolvers v0.9.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [8ac3fa9e] + LRUCache v1.6.2 [b964fa9f] + LaTeXStrings v1.4.0 ⌅ [5078a376] + LazyArrays v1.10.0 [d3d80556] + LineSearches v7.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 ⌅ [a3b82374] + MatrixFactorizations v2.2.0 [e1d29d7a] + Missings v1.2.0 ⌃ [d41bc354] + NLSolversBase v7.8.3 [77ba4419] + NaNMath v1.1.3 [6fe1bfb0] + OffsetArrays v1.17.0 ⌃ [429524aa] + Optim v1.11.0 [bac558e1] + OrderedCollections v1.8.1 [d96e819e] + Parameters v0.12.3 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [27ebfcd6] + Primes v0.5.7 [92933f4c] + ProgressMeter v1.10.4 [43287f4e] + PtrArrays v1.3.0 ⌅ [c4ea9172] + QuasiArrays v0.9.8 [308eb6b3] + RationalRoots v0.2.1 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [f2b01f46] + Roots v2.2.8 [efcf1570] + Setfield v1.1.2 [619b3e1a] + SolverTraces v0.1.3 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [90137ffa] + StaticArrays v1.9.14 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [892a3eda] + StringManipulation v0.4.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [3a884ed6] + UnPack v1.0.2 [1cfade01] + UnicodeFun v0.4.1 [1986cc42] + Unitful v1.23.1 [a7773ee8] + UnitfulAtomic v1.0.0 [9f57e263] + WignerSymbols v2.0.0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.13.1+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 15.7s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml` No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml` Precompiling package dependencies... Precompiling packages... 1421.2 ms ✓ DocStringExtensions 757.4 ms ✓ DataValueInterfaces 2195.3 ms ✓ IrrationalConstants 815.2 ms ✓ LaTeXStrings 772.3 ms ✓ UnPack 1944.8 ms ✓ Combinatorics 1163.2 ms ✓ Requires 804.4 ms ✓ IntegerMathUtils 1082.1 ms ✓ ConstructionBase 1067.0 ms ✓ Statistics 750.5 ms ✓ CommonSolve 837.8 ms ✓ DataAPI 2502.3 ms ✓ Format 802.0 ms ✓ StatsAPI 4730.0 ms ✓ MacroTools 1220.6 ms ✓ OrderedCollections 716.0 ms ✓ IteratorInterfaceExtensions 2187.2 ms ✓ Crayons 1687.7 ms ✓ OffsetArrays 998.0 ms ✓ HalfIntegers 1881.3 ms ✓ FillArrays 859.6 ms ✓ RationalRoots 1040.7 ms ✓ LRUCache 947.8 ms ✓ PositiveFactorizations 790.4 ms ✓ PtrArrays 1036.5 ms ✓ IntervalSets 897.6 ms ✓ StaticArraysCore 788.9 ms ✓ Reexport 1547.4 ms ✓ Formatting 1013.3 ms ✓ AbstractFFTs 887.6 ms ✓ CompositeTypes 795.8 ms ✓ CompositionsBase 919.7 ms ✓ InverseFunctions 1046.9 ms ✓ Infinities 1246.2 ms ✓ SuiteSparse 979.5 ms ✓ NaNMath 1815.5 ms ✓ ProgressMeter 37030.5 ms ✓ Unitful 1147.5 ms ✓ Preferences 1161.2 ms ✓ Compat 2620.5 ms ✓ UnicodeFun 1352.0 ms ✓ LogExpFunctions 890.0 ms ✓ Adapt 1160.9 ms ✓ Primes 815.8 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 1273.8 ms ✓ Statistics → SparseArraysExt 977.2 ms ✓ Missings 1593.0 ms ✓ CommonSubexpressions 938.6 ms ✓ Parameters 775.0 ms ✓ TableTraits 861.9 ms ✓ FillArrays → FillArraysStatisticsExt 1389.7 ms ✓ FillArrays → FillArraysSparseArraysExt 797.1 ms ✓ LRUCache → SerializationExt 966.5 ms ✓ AliasTables 788.1 ms ✓ IntervalSets → IntervalSetsRandomExt 831.1 ms ✓ IntervalSets → IntervalSetsStatisticsExt 805.4 ms ✓ ConstructionBase → ConstructionBaseIntervalSetsExt 1146.6 ms ✓ DiffResults 3446.9 ms ✓ AbstractFFTs → AbstractFFTsTestExt 1367.2 ms ✓ InverseFunctions → InverseFunctionsTestExt 848.4 ms ✓ InverseFunctions → InverseFunctionsDatesExt 803.3 ms ✓ CompositionsBase → CompositionsBaseInverseFunctionsExt 1657.3 ms ✓ Unitful → ConstructionBaseUnitfulExt 1669.8 ms ✓ Unitful → InverseFunctionsUnitfulExt 1806.6 ms ✓ Unitful → PrintfExt 891.3 ms ✓ PrecompileTools 1670.2 ms ✓ JLLWrappers 999.1 ms ✓ Compat → CompatLinearAlgebraExt 925.9 ms ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 1452.0 ms ✓ Adapt → AdaptSparseArraysExt 873.1 ms ✓ OffsetArrays → OffsetArraysAdaptExt 4310.0 ms ✓ WignerSymbols 2849.0 ms ✓ Setfield 1644.1 ms ✓ Tables 4994.9 ms ✓ Accessors 9170.6 ms ✓ UnitfulAtomic 3221.8 ms ✓ StringManipulation 2808.7 ms ✓ RecipesBase 13628.4 ms ✓ StaticArrays 1524.5 ms ✓ OpenSpecFun_jll 4025.1 ms ✓ DataStructures 3886.5 ms ✓ SolverTraces 1567.6 ms ✓ ArrayInterface 1686.6 ms ✓ Accessors → UnitfulExt 2481.8 ms ✓ Accessors → LinearAlgebraExt 1409.5 ms ✓ Accessors → TestExt 2494.4 ms ✓ Accessors → IntervalSetsExt 29387.3 ms ✓ PrettyTables 4184.4 ms ✓ IterativeSolvers 1336.8 ms ✓ IntervalSets → IntervalSetsRecipesBaseExt 3816.1 ms ✓ ArnoldiMethod 1227.1 ms ✓ StaticArrays → StaticArraysStatisticsExt 1316.3 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 22647.7 ms ✓ ArrayLayouts 1276.4 ms ✓ Adapt → AdaptStaticArraysExt 1424.9 ms ✓ Accessors → StaticArraysExt 5425.7 ms ✓ SpecialFunctions 1303.4 ms ✓ SortingAlgorithms 1228.3 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 6434.0 ms ✓ Roots 4422.1 ms ✓ DomainSets 3129.7 ms ✓ ArrayLayouts → ArrayLayoutsSparseArraysExt 4134.4 ms ✓ BlockArrays 3721.6 ms ✓ MatrixFactorizations 28862.8 ms ✓ BandedMatrices 4826.0 ms ✓ FastGaussQuadrature 1307.2 ms ✓ DiffRules 4634.1 ms ✓ StatsBase 1811.7 ms ✓ FiniteDiff 6897.9 ms ✓ LazyArrays 4127.1 ms ✓ BandedMatrices → BandedMatricesSparseArraysExt 4170.5 ms ✓ ArrayInterface → ArrayInterfaceBandedMatricesExt 4912.4 ms ✓ BlockBandedMatrices 10319.3 ms ✓ ForwardDiff 4142.6 ms ✓ FiniteDiff → FiniteDiffBandedMatricesExt 1836.5 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 3552.5 ms ✓ LazyArrays → LazyArraysStaticArraysExt 12892.5 ms ✓ AtomicLevels 4804.3 ms ✓ BlockBandedMatrices → BlockBandedMatricesSparseArraysExt 4879.0 ms ✓ ArrayInterface → ArrayInterfaceBlockBandedMatricesExt 4826.5 ms ✓ FiniteDiff → FiniteDiffBlockBandedMatricesExt 3123.9 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 3458.2 ms ✓ Unitful → ForwardDiffExt 2441.7 ms ✓ Roots → RootsForwardDiffExt 5716.0 ms ✓ NLSolversBase 4592.6 ms ✓ InfiniteArrays 5923.5 ms ✓ QuasiArrays 7505.4 ms ✓ EnergyExpressions 7426.5 ms ✓ LineSearches 3778.2 ms ✓ InfiniteArrays → InfiniteArraysStatisticsExt 15397.1 ms ✓ AngularMomentumAlgebra ✗ Optim 6793.6 ms ✓ ContinuumArrays 16258.7 ms ✓ CoulombIntegrals ✗ AtomicStructure 133 dependencies successfully precompiled in 511 seconds. 19 already precompiled. 6 dependencies had output during precompilation: ┌ BandedMatrices │ WARNING: Constructor for type "AbstractMatrix" was extended in `BandedMatrices` without explicit qualification or import. │ NOTE: Assumed "AbstractMatrix" refers to `Base.AbstractMatrix`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function AbstractMatrix end`. │ Hint: To silence the warning, qualify `AbstractMatrix` as `Base.AbstractMatrix` in the method signature or explicitly `import Base: AbstractMatrix`. │ WARNING: Constructor for type "AbstractArray" was extended in `BandedMatrices` without explicit qualification or import. │ NOTE: Assumed "AbstractArray" refers to `Base.AbstractArray`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function AbstractArray end`. │ Hint: To silence the warning, qualify `AbstractArray` as `Base.AbstractArray` in the method signature or explicitly `import Base: AbstractArray`. │ WARNING: Constructor for type "Matrix" was extended in `BandedMatrices` without explicit qualification or import. │ NOTE: Assumed "Matrix" refers to `Base.Matrix`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Matrix end`. │ Hint: To silence the warning, qualify `Matrix` as `Base.Matrix` in the method signature or explicitly `import Base: Matrix`. └ ┌ DomainSets │ WARNING: Constructor for type "Number" was extended in `DomainSets` without explicit qualification or import. │ NOTE: Assumed "Number" refers to `Base.Number`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Number end`. │ Hint: To silence the warning, qualify `Number` as `Base.Number` in the method signature or explicitly `import Base: Number`. └ ┌ ArrayInterface → ArrayInterfaceBandedMatricesExt │ WARNING: Constructor for type "BandedMatrixIndex" was extended in `ArrayInterfaceBandedMatricesExt` without explicit qualification or import. │ NOTE: Assumed "BandedMatrixIndex" refers to `ArrayInterface.BandedMatrixIndex`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function BandedMatrixIndex end`. │ Hint: To silence the warning, qualify `BandedMatrixIndex` as `ArrayInterface.BandedMatrixIndex` in the method signature or explicitly `import ArrayInterface: BandedMatrixIndex`. └ ┌ QuasiArrays │ WARNING: Constructor for type "AbstractVector" was extended in `QuasiArrays` without explicit qualification or import. │ NOTE: Assumed "AbstractVector" refers to `Base.AbstractVector`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function AbstractVector end`. │ Hint: To silence the warning, qualify `AbstractVector` as `Base.AbstractVector` in the method signature or explicitly `import Base: AbstractVector`. │ WARNING: Constructor for type "AbstractArray" was extended in `QuasiArrays` without explicit qualification or import. │ NOTE: Assumed "AbstractArray" refers to `Base.AbstractArray`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function AbstractArray end`. │ Hint: To silence the warning, qualify `AbstractArray` as `Base.AbstractArray` in the method signature or explicitly `import Base: AbstractArray`. │ WARNING: Constructor for type "AbstractMatrix" was extended in `QuasiArrays` without explicit qualification or import. │ NOTE: Assumed "AbstractMatrix" refers to `Base.AbstractMatrix`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function AbstractMatrix end`. │ Hint: To silence the warning, qualify `AbstractMatrix` as `Base.AbstractMatrix` in the method signature or explicitly `import Base: AbstractMatrix`. │ WARNING: Constructor for type "Tuple" was extended in `QuasiIteratorsMD` without explicit qualification or import. │ NOTE: Assumed "Tuple" refers to `Base.Tuple`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Tuple end`. │ Hint: To silence the warning, qualify `Tuple` as `Base.Tuple` in the method signature or explicitly `import Base: Tuple`. └ ┌ LazyArrays │ WARNING: Constructor for type "MemoryLayout" was extended in `LazyArrays` without explicit qualification or import. │ NOTE: Assumed "MemoryLayout" refers to `ArrayLayouts.MemoryLayout`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function MemoryLayout end`. │ Hint: To silence the warning, qualify `MemoryLayout` as `ArrayLayouts.MemoryLayout` in the method signature or explicitly `import ArrayLayouts: MemoryLayout`. └ ┌ Formatting │ ┌ Warning: DEPRECATION NOTICE │ │ │ │ Formatting.jl has been unmaintained for a while, with some serious │ │ correctness bugs compromising the original purpose of the package. As a result, │ │ it has been deprecated - consider using an alternative, such as │ │ `Format.jl` (https://github.com/JuliaString/Format.jl) or the `Printf` stdlib directly. │ │ │ │ If you are not using Formatting.jl as a direct dependency, please consider │ │ opening an issue on any packages you are using that do use it as a dependency. │ │ From Julia 1.9 onwards, you can query `]why Formatting` to figure out which │ │ package originally brings it in as a dependency. │ └ @ Formatting ~/.julia/packages/Formatting/3VxOt/src/Formatting.jl:12 └ ERROR: LoadError: The following 1 direct dependency failed to precompile: AtomicStructure Failed to precompile AtomicStructure [e24b7630-0518-11e9-1346-1188d3abce50] to "/home/pkgeval/.julia/compiled/v1.13/AtomicStructure/jl_RPP3jJ" (ProcessExited(1)). ERROR: LoadError: syntax: misplaced "global" declaration Stacktrace: [1] top-level scope @ ~/.julia/packages/Optim/HvjCd/src/Optim.jl:223 [2] include(mod::Module, _path::String) @ Base ./Base.jl:311 [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3002 [4] top-level scope @ stdin:5 [5] eval(m::Module, e::Any) @ Core ./boot.jl:489 [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2848 [7] include_string @ ./loading.jl:2858 [inlined] [8] exec_options(opts::Base.JLOptions) @ Base ./client.jl:318 [9] _start() @ Base ./client.jl:553 in expression starting at /home/pkgeval/.julia/packages/Optim/HvjCd/src/Optim.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile Optim [429524aa-4258-5aef-a3af-852621145aeb] to "/home/pkgeval/.julia/compiled/v1.13/Optim/jl_Tmosag" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3289 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2654 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [7] #invokelatest_gr#235 @ ./reflection.jl:1333 [inlined] [8] invokelatest_gr @ ./reflection.jl:1325 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3860 [10] maybe_cachefile_lock(f::Function, pkg::Base.PkgId, srcpath::String) @ Base ./loading.jl:3857 [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2640 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2468 [13] macro expansion @ ./loading.jl:2396 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2360 [16] require @ ./loading.jl:2336 [inlined] [17] eval_import_path @ ./module.jl:36 [inlined] [18] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [19] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [20] top-level scope @ ~/.julia/packages/AtomicStructure/DDEEr/src/SCF/SCF.jl:10 [21] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [22] top-level scope @ ~/.julia/packages/AtomicStructure/DDEEr/src/AtomicStructure.jl:35 [23] include(mod::Module, _path::String) @ Base ./Base.jl:311 [24] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3002 [25] top-level scope @ stdin:5 [26] eval(m::Module, e::Any) @ Core ./boot.jl:489 [27] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2848 [28] include_string @ ./loading.jl:2858 [inlined] [29] exec_options(opts::Base.JLOptions) @ Base ./client.jl:318 [30] _start() @ Base ./client.jl:553 in expression starting at /home/pkgeval/.julia/packages/AtomicStructure/DDEEr/src/SCF/SCF.jl:1 in expression starting at /home/pkgeval/.julia/packages/AtomicStructure/DDEEr/src/AtomicStructure.jl:1 in expression starting at stdin: in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 519.98s ################################################################################ # Loading # Loading AtomicStructure... Precompiling packages... ✗ Optim Info Given AtomicStructure was explicitly requested, output will be shown live  ERROR: LoadError: syntax: misplaced "global" declaration Stacktrace:  [1] top-level scope  @ ~/.julia/packages/Optim/HvjCd/src/Optim.jl:223  [2] include(mod::Module, _path::String)  @ Base ./Base.jl:311  [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)  @ Base ./loading.jl:3002  [4] top-level scope  @ stdin:5  [5] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2848  [7] include_string  @ ./loading.jl:2858 [inlined]  [8] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:318  [9] _start()  @ Base ./client.jl:553 in expression starting at /home/pkgeval/.julia/packages/Optim/HvjCd/src/Optim.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile Optim [429524aa-4258-5aef-a3af-852621145aeb] to "/home/pkgeval/.julia/compiled/v1.13/Optim/jl_39XNjc" (ProcessExited(1)). Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)  @ Base ./loading.jl:3289  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()  @ Base ./loading.jl:2654  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94  [5] #mkpidlock#7  @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined]  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115  [7] #invokelatest_gr#235  @ ./reflection.jl:1333 [inlined]  [8] invokelatest_gr  @ ./reflection.jl:1325 [inlined]  [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)  @ Base ./loading.jl:3860  [10] maybe_cachefile_lock(f::Function, pkg::Base.PkgId, srcpath::String)  @ Base ./loading.jl:3857  [11] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2640  [12] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2468  [13] macro expansion  @ ./loading.jl:2396 [inlined]  [14] macro expansion  @ ./lock.jl:376 [inlined]  [15] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2360  [16] require  @ ./loading.jl:2336 [inlined]  [17] eval_import_path  @ ./module.jl:36 [inlined]  [18] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [19] _eval_using(to::Module, path::Expr)  @ Base ./module.jl:137  [20] top-level scope  @ ~/.julia/packages/AtomicStructure/DDEEr/src/SCF/SCF.jl:10  [21] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:312  [22] top-level scope  @ ~/.julia/packages/AtomicStructure/DDEEr/src/AtomicStructure.jl:35  [23] include(mod::Module, _path::String)  @ Base ./Base.jl:311  [24] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3002  [25] top-level scope  @ stdin:5  [26] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [27] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2848  [28] include_string  @ ./loading.jl:2858 [inlined]  [29] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:318  [30] _start()  @ Base ./client.jl:553 in expression starting at /home/pkgeval/.julia/packages/AtomicStructure/DDEEr/src/SCF/SCF.jl:1 in expression starting at /home/pkgeval/.julia/packages/AtomicStructure/DDEEr/src/AtomicStructure.jl:1 in expression starting at stdin:5 ✗ AtomicStructure 0 dependencies successfully precompiled in 38 seconds. 152 already precompiled. ERROR: The following 1 direct dependency failed to precompile: AtomicStructure Failed to precompile AtomicStructure [e24b7630-0518-11e9-1346-1188d3abce50] to "/home/pkgeval/.julia/compiled/v1.13/AtomicStructure/jl_Q1W9rZ" (ProcessExited(1)). ERROR: LoadError: syntax: misplaced "global" declaration Stacktrace: [1] top-level scope @ ~/.julia/packages/Optim/HvjCd/src/Optim.jl:223 [2] include(mod::Module, _path::String) @ Base ./Base.jl:311 [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3002 [4] top-level scope @ stdin:5 [5] eval(m::Module, e::Any) @ Core ./boot.jl:489 [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2848 [7] include_string @ ./loading.jl:2858 [inlined] [8] exec_options(opts::Base.JLOptions) @ Base ./client.jl:318 [9] _start() @ Base ./client.jl:553 in expression starting at /home/pkgeval/.julia/packages/Optim/HvjCd/src/Optim.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile Optim [429524aa-4258-5aef-a3af-852621145aeb] to "/home/pkgeval/.julia/compiled/v1.13/Optim/jl_39XNjc" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3289 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2654 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [7] #invokelatest_gr#235 @ ./reflection.jl:1333 [inlined] [8] invokelatest_gr @ ./reflection.jl:1325 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3860 [10] maybe_cachefile_lock(f::Function, pkg::Base.PkgId, srcpath::String) @ Base ./loading.jl:3857 [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2640 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2468 [13] macro expansion @ ./loading.jl:2396 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2360 [16] require @ ./loading.jl:2336 [inlined] [17] eval_import_path @ ./module.jl:36 [inlined] [18] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [19] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [20] top-level scope @ ~/.julia/packages/AtomicStructure/DDEEr/src/SCF/SCF.jl:10 [21] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [22] top-level scope @ ~/.julia/packages/AtomicStructure/DDEEr/src/AtomicStructure.jl:35 [23] include(mod::Module, _path::String) @ Base ./Base.jl:311 [24] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3002 [25] top-level scope @ stdin:5 [26] eval(m::Module, e::Any) @ Core ./boot.jl:489 [27] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2848 [28] include_string @ ./loading.jl:2858 [inlined] [29] exec_options(opts::Base.JLOptions) @ Base ./client.jl:318 [30] _start() @ Base ./client.jl:553 in expression starting at /home/pkgeval/.julia/packages/AtomicStructure/DDEEr/src/SCF/SCF.jl:1 in expression starting at /home/pkgeval/.julia/packages/AtomicStructure/DDEEr/src/AtomicStructure.jl:1 in expression starting at stdin: Loading failed after 40.51s ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so -g1 --check-bounds=yes --inline=yes --pkgimages=existing -e 'using AtomicStructure'`, ProcessExited(1)) [1] Stacktrace: [1] pipeline_error @ ./process.jl:602 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:517 [3] run(::Cmd) @ Base ./process.jl:514 [4] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:193 [5] include(mod::Module, _path::String) @ Base ./Base.jl:311 [6] exec_options(opts::Base.JLOptions) @ Base ./client.jl:320 [7] _start() @ Base ./client.jl:553 in expression starting at /PkgEval.jl/scripts/evaluate.jl:184 PkgEval failed after 598.47s: package has syntax issues