Package evaluation to test PhyNEST on Julia 1.14.0-DEV.1688 (ee54f91d68*) started at 2026-02-10T09:46:43.718 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 11.42s ################################################################################ # Installation # Installing PhyNEST... Resolving package versions... Installed Libuuid_jll ───────────────── v2.41.3+0 Installed Libtiff_jll ───────────────── v4.7.2+0 Installed HarfBuzz_jll ──────────────── v8.5.1+0 Installed Cairo_jll ─────────────────── v1.18.5+0 Installed InlineStrings ─────────────── v1.4.5 Installed Optim ─────────────────────── v1.13.3 Installed Functors ──────────────────── v0.3.0 Installed Bzip2_jll ─────────────────── v1.0.9+0 Installed OrderedCollections ────────── v1.8.1 Installed Xorg_libXinerama_jll ──────── v1.1.6+0 Installed Graphite2_jll ─────────────── v1.3.15+0 Installed Wayland_protocols_jll ─────── v1.44.0+0 Installed libsass_jll ───────────────── v3.6.6+0 Installed Fontconfig_jll ────────────── v2.17.1+0 Installed FileIO ────────────────────── v1.18.0 Installed SentinelArrays ────────────── v1.4.9 Installed QuadGK ────────────────────── v2.11.2 Installed NaNMath ───────────────────── v1.1.3 Installed Xorg_libxcb_jll ───────────── v1.17.1+0 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed EnumX ─────────────────────── v1.0.6 Installed NLSolversBase ─────────────── v7.10.0 Installed Librsvg_jll ───────────────── v2.54.7+0 Installed Graphics ──────────────────── v1.1.3 Installed Tables ────────────────────── v1.12.1 Installed LZO_jll ───────────────────── v2.10.3+0 Installed Reexport ──────────────────── v1.2.2 Installed LERC_jll ──────────────────── v4.0.1+0 Installed Missings ──────────────────── v1.2.0 Installed Preferences ───────────────── v1.5.1 Installed LLVMOpenMP_jll ────────────── v18.1.8+0 Installed TableTraits ───────────────── v1.0.1 Installed SortingAlgorithms ─────────── v1.2.2 Installed LaTeXStrings ──────────────── v1.4.0 Installed ADTypes ───────────────────── v1.21.0 Installed Crayons ───────────────────── v4.1.1 Installed DataStructures ────────────── v0.18.22 Installed EpollShim_jll ─────────────── v0.0.20230411+1 Installed MacroTools ────────────────── v0.5.16 Installed DiffResults ───────────────── v1.1.0 Installed Sass ──────────────────────── v0.2.0 Installed OpenSSH_jll ───────────────── v10.2.1+0 Installed DelimitedFiles ────────────── v1.9.1 Installed AbstractTrees ─────────────── v0.4.5 Installed FillArrays ────────────────── v1.16.0 Installed CodecZlib ─────────────────── v0.7.8 Installed Xorg_libXdamage_jll ───────── v1.1.6+0 Installed Xorg_libXau_jll ───────────── v1.0.13+0 Installed RoundingIntegers ──────────── v1.1.0 Installed ArrayInterface ────────────── v7.22.0 Installed MethodAnalysis ────────────── v1.0.0 Installed Observables ───────────────── v0.5.5 Installed Cairo ─────────────────────── v1.1.1 Installed StatsBase ─────────────────── v0.33.21 Installed Xorg_libXfixes_jll ────────── v6.0.2+0 Installed DataValueInterfaces ───────── v1.0.0 Installed CEnum ─────────────────────── v0.5.0 Installed Expat_jll ─────────────────── v2.7.3+0 Installed IrrationalConstants ───────── v0.2.6 Installed libpng_jll ────────────────── v1.6.54+0 Installed BitFlags ──────────────────── v0.1.9 Installed CommonSubexpressions ──────── v0.3.1 Installed Libffi_jll ────────────────── v3.4.7+0 Installed Pixman_jll ────────────────── v0.44.2+0 Installed LeftChildRightSiblingTrees ── v0.2.1 Installed IOCapture ─────────────────── v0.2.5 Installed Xorg_libXcursor_jll ───────── v1.2.4+0 Installed Scratch ───────────────────── v1.3.0 Installed PooledArrays ──────────────── v1.4.3 Installed Setfield ──────────────────── v1.1.2 Installed WorkerUtilities ───────────── v1.6.1 Installed Graphene_jll ──────────────── v1.10.8+0 Installed PDMats ────────────────────── v0.11.35 Installed BenchmarkTools ────────────── v1.6.3 Installed DocStringExtensions ───────── v0.9.5 Installed BioSequences ──────────────── v3.5.1 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed ForwardDiff ───────────────── v1.3.2 Installed FASTX ─────────────────────── v2.1.7 Installed GTK4_jll ──────────────────── v4.18.6+0 Installed adwaita_icon_theme_jll ────── v43.0.1+0 Installed DifferentiationInterface ──── v0.7.16 Installed StringViews ───────────────── v1.3.7 Installed AliasTables ───────────────── v1.1.3 Installed Combinatorics ─────────────── v1.1.0 Installed ShiftedArrays ─────────────── v2.0.0 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed SIMD ──────────────────────── v3.7.2 Installed Git_LFS_jll ───────────────── v3.7.0+0 Installed DataAPI ───────────────────── v1.16.0 Installed InvertedIndices ───────────── v1.3.1 Installed MathOptInterface ──────────── v1.49.0 Installed Documenter ────────────────── v0.27.25 Installed Xorg_libXi_jll ────────────── v1.8.3+0 Installed Colors ────────────────────── v0.13.1 Installed Wayland_jll ───────────────── v1.24.0+0 Installed GtkObservables ────────────── v2.2.2 Installed StatsModels ───────────────── v0.6.33 Installed Twiddle ───────────────────── v1.1.2 Installed Libglvnd_jll ──────────────── v1.7.1+1 Installed StaticArraysCore ──────────── v1.4.4 Installed Xorg_libxkbfile_jll ───────── v1.1.3+0 Installed StaticArrays ──────────────── v1.9.16 Installed ColorTypes ────────────────── v0.12.1 Installed StringManipulation ────────── v0.4.2 Installed Requires ──────────────────── v1.3.1 Installed Xorg_xkbcomp_jll ──────────── v1.4.7+0 Installed Glib_jll ──────────────────── v2.86.3+0 Installed DiffRules ─────────────────── v1.15.1 Installed LogExpFunctions ───────────── v0.3.29 Installed Git_jll ───────────────────── v2.53.0+0 Installed Parsers ───────────────────── v2.8.3 Installed JSON ──────────────────────── v0.21.4 Installed CSV ───────────────────────── v0.10.15 Installed PrettyTables ──────────────── v3.1.2 Installed Distributions ─────────────── v0.25.123 Installed PhyloNetworks ─────────────── v0.15.3 Installed FiniteDiff ────────────────── v2.29.0 Installed DocumenterTools ───────────── v0.1.21 Installed Rmath ─────────────────────── v0.9.0 Installed StatsFuns ─────────────────── v1.5.2 Installed Xorg_libXdmcp_jll ─────────── v1.1.6+0 Installed Xorg_xkeyboard_config_jll ─── v2.44.0+0 Installed WeakRefStrings ────────────── v1.4.2 Installed JLLWrappers ───────────────── v1.7.1 Installed BioGenerics ───────────────── v0.1.5 Installed XZ_jll ────────────────────── v5.8.2+0 Installed MutableArithmetics ────────── v1.6.7 Installed DataFrames ────────────────── v1.8.1 Installed Pango_jll ─────────────────── v1.57.0+0 Installed Xorg_xtrans_jll ───────────── v1.6.0+0 Installed JpegTurbo_jll ─────────────── v3.1.4+0 Installed FilePathsBase ─────────────── v0.9.24 Installed NLopt ─────────────────────── v0.6.5 Installed Adapt ─────────────────────── v4.4.0 Installed Libmount_jll ──────────────── v2.41.3+0 Installed ConstructionBase ──────────── v1.6.0 Installed Gumbo_jll ─────────────────── v0.10.2+0 Installed HypergeometricFunctions ───── v0.3.28 Installed FlameGraphs ───────────────── v1.1.0 Installed Xorg_libX11_jll ───────────── v1.8.12+0 Installed PositiveFactorizations ────── v0.2.4 Installed Compat ────────────────────── v4.18.1 Installed TranscodingStreams ────────── v0.11.3 Installed Suppressor ────────────────── v0.2.8 Installed Statistics ────────────────── v1.11.1 Installed StatsAPI ──────────────────── v1.8.0 Installed PrecompileTools ───────────── v1.3.3 Installed Libepoxy_jll ──────────────── v1.5.11+0 Installed CodecBzip2 ────────────────── v0.8.5 Installed GLM ───────────────────────── v1.8.3 Installed xkbcommon_jll ─────────────── v1.13.0+0 Installed GettextRuntime_jll ────────── v0.22.4+0 Installed BioSymbols ────────────────── v5.2.0 Installed PtrArrays ─────────────────── v1.3.0 Installed ProfileView ───────────────── v1.10.2 Installed FriBidi_jll ───────────────── v1.0.17+0 Installed Xorg_libXrender_jll ───────── v0.9.12+0 Installed XML2_jll ──────────────────── v2.13.9+0 Installed hicolor_icon_theme_jll ────── v0.18.0+0 Installed iso_codes_jll ─────────────── v4.18.0+0 Installed Git ───────────────────────── v1.5.0 Installed IntervalSets ──────────────── v0.7.13 Installed Gtk4 ──────────────────────── v0.7.12 Installed SpecialFunctions ──────────── v2.6.1 Installed Libiconv_jll ──────────────── v1.18.0+0 Installed Gumbo ─────────────────────── v0.8.3 Installed PhyNEST ───────────────────── v0.1.12 Installed FreeType2_jll ─────────────── v2.13.4+0 Installed gdk_pixbuf_jll ────────────── v2.42.13+0 Installed FixedPointNumbers ─────────── v0.8.5 Installed LineSearches ──────────────── v7.5.1 Installed Automa ────────────────────── v1.1.0 Installed Xorg_libXext_jll ──────────── v1.3.7+0 Installed IndirectArrays ────────────── v1.0.0 Installed Xorg_libXrandr_jll ────────── v1.5.5+0 Installed MathProgBase ──────────────── v0.7.8 Installed ANSIColoredPrinters ───────── v0.0.1 Installed NLopt_jll ─────────────────── v2.10.0+0 Installing 60 artifacts Installed artifact Xorg_libXau 36.6 KiB Installed artifact Bzip2 503.5 KiB Installed artifact xkbcommon 298.7 KiB Installed artifact Xorg_xkbcomp 274.8 KiB Installed artifact Graphene 223.2 KiB Installed artifact hicolor_icon_theme 13.2 KiB Installed artifact Xorg_libxcb 2.1 MiB Installed artifact Wayland 390.6 KiB Installed artifact Xorg_libXi 1.6 MiB Installed artifact Cairo 2.2 MiB Installed artifact Libiconv 1.9 MiB Installed artifact Libtiff 2.3 MiB Installed artifact Graphite2 120.2 KiB Installed artifact libpng 328.7 KiB Installed artifact JpegTurbo 1.4 MiB Installed artifact Librsvg 9.3 MiB Installed artifact Wayland_protocols 185.1 KiB Installed artifact XZ 1.5 MiB Installed artifact Xorg_libXext 699.9 KiB Installed artifact Expat 283.3 KiB Installed artifact Xorg_libXcursor 227.1 KiB Installed artifact Xorg_libXrandr 354.5 KiB Installed artifact libsass 8.9 MiB Installed artifact Xorg_xtrans 48.2 KiB Installed artifact Libuuid 3.7 MiB Installed artifact GettextRuntime 543.0 KiB Installed artifact Xorg_libXinerama 50.1 KiB Installed artifact HarfBuzz 1.7 MiB Installed artifact Fontconfig 984.8 KiB Installed artifact iso_codes 7.5 MiB Installed artifact adwaita_icon_theme 5.0 MiB Installed artifact LZO 208.9 KiB Installed artifact Pango 2.0 MiB Installed artifact Libffi 44.2 KiB Installed artifact Xorg_libXfixes 59.0 KiB Installed artifact Xorg_libxkbfile 486.7 KiB Installed artifact Xorg_libXdmcp 67.7 KiB Installed artifact Xorg_xkeyboard_config 537.5 KiB Installed artifact FreeType2 1.5 MiB Installed artifact Xorg_libX11 13.9 MiB Installed artifact Glib 7.7 MiB Installed artifact LERC 272.9 KiB Installed artifact NLopt 322.7 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact XML2 2.5 MiB Installed artifact LLVMOpenMP 661.6 KiB Installed artifact Gumbo 703.8 KiB Installed artifact Git_LFS 9.6 MiB Installed artifact gdk_pixbuf 943.6 KiB Installed artifact FriBidi 78.9 KiB Installed artifact Xorg_libXrender 435.9 KiB Installed artifact Libglvnd 833.5 KiB Installed artifact Libmount 6.5 MiB Installed artifact Libepoxy 504.4 KiB Installed artifact Xorg_libXdamage 50.0 KiB Installed artifact Rmath 121.9 KiB Installed artifact Pixman 372.2 KiB Installed artifact OpenSSH 4.3 MiB Installed artifact GTK4 14.1 MiB Installed artifact Git 49.5 MiB Updating `~/.julia/environments/v1.14/Project.toml` [115de871] + PhyNEST v0.1.12 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.21.0 [a4c015fc] + ANSIColoredPrinters v0.0.1 [1520ce14] + AbstractTrees v0.4.5 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.22.0 [67c07d97] + Automa v1.1.0 [6e4b80f9] + BenchmarkTools v1.6.3 [47718e42] + BioGenerics v0.1.5 [7e6ae17a] + BioSequences v3.5.1 [3c28c6f8] + BioSymbols v5.2.0 [d1d4a3ce] + BitFlags v0.1.9 [fa961155] + CEnum v0.5.0 [336ed68f] + CSV v0.10.15 [159f3aea] + Cairo v1.1.1 [523fee87] + CodecBzip2 v0.8.5 [944b1d66] + CodecZlib v0.7.8 [3da002f7] + ColorTypes v0.12.1 [5ae59095] + Colors v0.13.1 [861a8166] + Combinatorics v1.1.0 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.16 [31c24e10] + Distributions v0.25.123 [ffbed154] + DocStringExtensions v0.9.5 ⌅ [e30172f5] + Documenter v0.27.25 [35a29f4d] + DocumenterTools v0.1.21 [4e289a0a] + EnumX v1.0.6 [c2308a5c] + FASTX v2.1.7 [5789e2e9] + FileIO v1.18.0 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.16.0 [6a86dc24] + FiniteDiff v2.29.0 [53c48c17] + FixedPointNumbers v0.8.5 [08572546] + FlameGraphs v1.1.0 [f6369f11] + ForwardDiff v1.3.2 ⌅ [d9f16b24] + Functors v0.3.0 ⌃ [38e38edf] + GLM v1.8.3 [d7ba0133] + Git v1.5.0 [a2bd30eb] + Graphics v1.1.3 [9db2cae5] + Gtk4 v0.7.12 [8710efd8] + GtkObservables v2.2.2 [708ec375] + Gumbo v0.8.3 [34004b35] + HypergeometricFunctions v0.3.28 ⌅ [b5f81e59] + IOCapture v0.2.5 [9b13fd28] + IndirectArrays v1.0.0 [842dd82b] + InlineStrings v1.4.5 [8197267c] + IntervalSets v0.7.13 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 ⌅ [682c06a0] + JSON v0.21.4 [b964fa9f] + LaTeXStrings v1.4.0 [1d6d02ad] + LeftChildRightSiblingTrees v0.2.1 ⌃ [d3d80556] + LineSearches v7.5.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [b8f27783] + MathOptInterface v1.49.0 [fdba3010] + MathProgBase v0.7.8 [85b6ec6f] + MethodAnalysis v1.0.0 [e1d29d7a] + Missings v1.2.0 [d8a4904e] + MutableArithmetics v1.6.7 ⌅ [d41bc354] + NLSolversBase v7.10.0 ⌅ [76087f3c] + NLopt v0.6.5 [77ba4419] + NaNMath v1.1.3 [510215fc] + Observables v0.5.5 ⌅ [429524aa] + Optim v1.13.3 [bac558e1] + OrderedCollections v1.8.1 ⌃ [90014a1f] + PDMats v0.11.35 [69de0a69] + Parsers v2.8.3 [115de871] + PhyNEST v0.1.12 ⌅ [33ad39ac] + PhyloNetworks v0.15.3 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [08abe8d2] + PrettyTables v3.1.2 [c46f51b8] + ProfileView v1.10.2 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [d5f540fe] + RoundingIntegers v1.1.0 [fdea26ae] + SIMD v3.7.2 [322a6be2] + Sass v0.2.0 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.9 [efcf1570] + Setfield v1.1.2 [1277b4bf] + ShiftedArrays v2.0.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 ⌅ [2913bbd2] + StatsBase v0.33.21 [4c63d2b9] + StatsFuns v1.5.2 ⌅ [3eaba693] + StatsModels v0.6.33 [892a3eda] + StringManipulation v0.4.2 [354b36f9] + StringViews v1.3.7 [fd094767] + Suppressor v0.2.8 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [3bb67fe8] + TranscodingStreams v0.11.3 [7200193e] + Twiddle v1.1.2 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [6e34b625] + Bzip2_jll v1.0.9+0 [83423d85] + Cairo_jll v1.18.5+0 [2702e6a9] + EpollShim_jll v0.0.20230411+1 [2e619515] + Expat_jll v2.7.3+0 [a3f928ae] + Fontconfig_jll v2.17.1+0 [d7e528f0] + FreeType2_jll v2.13.4+0 [559328eb] + FriBidi_jll v1.0.17+0 [6ebb71f1] + GTK4_jll v4.18.6+0 [b0724c58] + GettextRuntime_jll v0.22.4+0 [020c3dae] + Git_LFS_jll v3.7.0+0 [f8c6e375] + Git_jll v2.53.0+0 [7746bdde] + Glib_jll v2.86.3+0 [75302f13] + Graphene_jll v1.10.8+0 [3b182d85] + Graphite2_jll v1.3.15+0 [528830af] + Gumbo_jll v0.10.2+0 [2e76f6c2] + HarfBuzz_jll v8.5.1+0 [aacddb02] + JpegTurbo_jll v3.1.4+0 [88015f11] + LERC_jll v4.0.1+0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [dd4b983a] + LZO_jll v2.10.3+0 [42c93a91] + Libepoxy_jll v1.5.11+0 ⌅ [e9f186c6] + Libffi_jll v3.4.7+0 [7e76a0d4] + Libglvnd_jll v1.7.1+1 [94ce4f54] + Libiconv_jll v1.18.0+0 [4b2f31a3] + Libmount_jll v2.41.3+0 [925c91fb] + Librsvg_jll v2.54.7+0 [89763e89] + Libtiff_jll v4.7.2+0 [38a345b3] + Libuuid_jll v2.41.3+0 [079eb43e] + NLopt_jll v2.10.0+0 [9bd350c2] + OpenSSH_jll v10.2.1+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [36c8627f] + Pango_jll v1.57.0+0 ⌅ [30392449] + Pixman_jll v0.44.2+0 [f50d1b31] + Rmath_jll v0.5.1+0 [a2964d1f] + Wayland_jll v1.24.0+0 [2381bf8a] + Wayland_protocols_jll v1.44.0+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [ffd25f8a] + XZ_jll v5.8.2+0 [4f6342f7] + Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0 [935fb764] + Xorg_libXcursor_jll v1.2.4+0 [0aeada51] + Xorg_libXdamage_jll v1.1.6+0 [a3789734] + Xorg_libXdmcp_jll v1.1.6+0 [1082639a] + Xorg_libXext_jll v1.3.7+0 [d091e8ba] + Xorg_libXfixes_jll v6.0.2+0 [a51aa0fd] + Xorg_libXi_jll v1.8.3+0 [d1454406] + Xorg_libXinerama_jll v1.1.6+0 [ec84b674] + Xorg_libXrandr_jll v1.5.5+0 [ea2f1a96] + Xorg_libXrender_jll v0.9.12+0 [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0 [cc61e674] + Xorg_libxkbfile_jll v1.1.3+0 [35661453] + Xorg_xkbcomp_jll v1.4.7+0 [33bec58e] + Xorg_xkeyboard_config_jll v2.44.0+0 [c5fb5394] + Xorg_xtrans_jll v1.6.0+0 [b437f822] + adwaita_icon_theme_jll v43.0.1+0 [da03df04] + gdk_pixbuf_jll v2.42.13+0 [059c91fe] + hicolor_icon_theme_jll v0.18.0+0 [bf975903] + iso_codes_jll v4.18.0+0 [b53b4c65] + libpng_jll v1.6.54+0 [47bcb7c8] + libsass_jll v3.6.6+0 [d8fb68d0] + xkbcommon_jll v1.13.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [9abbd945] + Profile v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.18.0+0 [e37daf67] + LibGit2_jll v1.9.2+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.12.2 [4536629a] + OpenBLAS_jll v0.3.30+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 30.85s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4629.0 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling packages... 4160.2 ms ✓ MacroTools 1576.0 ms ✓ InlineStrings 774.2 ms ✓ Reexport 1114.9 ms ✓ ConstructionBase 1954.4 ms ✓ IrrationalConstants 762.7 ms ✓ DataValueInterfaces 866.1 ms ✓ StatsAPI 1106.1 ms ✓ Observables 892.5 ms ✓ Twiddle 1061.5 ms ✓ IntervalSets 847.3 ms ✓ CEnum 994.4 ms ✓ Functors 2174.2 ms ✓ Combinatorics 1148.1 ms ✓ StringViews 1303.1 ms ✓ TranscodingStreams 813.4 ms ✓ LaTeXStrings 1145.2 ms ✓ Statistics 999.2 ms ✓ StaticArraysCore 841.7 ms ✓ Suppressor 819.7 ms ✓ PtrArrays 1019.5 ms ✓ ANSIColoredPrinters 960.6 ms ✓ PositiveFactorizations 877.1 ms ✓ DataAPI 836.0 ms ✓ InvertedIndices 865.9 ms ✓ BitFlags 889.6 ms ✓ ShiftedArrays 1123.8 ms ✓ AbstractTrees 872.9 ms ✓ EnumX 981.2 ms ✓ WorkerUtilities 2165.7 ms ✓ FillArrays 849.7 ms ✓ IndirectArrays 869.1 ms ✓ RoundingIntegers 1233.4 ms ✓ OrderedCollections 1323.5 ms ✓ ADTypes 1133.5 ms ✓ DocStringExtensions 949.6 ms ✓ IteratorInterfaceExtensions 1803.9 ms ✓ Crayons 847.7 ms ✓ IOCapture 953.8 ms ✓ DelimitedFiles 1021.3 ms ✓ NaNMath 1258.7 ms ✓ Requires 1874.2 ms ✓ PDMats 2169.5 ms ✓ MathProgBase 936.0 ms ✓ Scratch 2002.4 ms ✓ SentinelArrays 1139.5 ms ✓ Compat 1109.5 ms ✓ Preferences 10832.1 ms ✓ MutableArithmetics 1644.7 ms ✓ CommonSubexpressions 806.2 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 770.4 ms ✓ IntervalSets → IntervalSetsRandomExt 767.4 ms ✓ ConstructionBase → ConstructionBaseIntervalSetsExt 913.9 ms ✓ BioGenerics 948.9 ms ✓ CodecZlib 1233.8 ms ✓ Statistics → SparseArraysExt 3744.6 ms ✓ FixedPointNumbers 777.0 ms ✓ IntervalSets → IntervalSetsStatisticsExt 876.9 ms ✓ DiffResults 961.2 ms ✓ AliasTables 947.6 ms ✓ Missings 1008.1 ms ✓ PooledArrays 873.9 ms ✓ LeftChildRightSiblingTrees 1081.7 ms ✓ MethodAnalysis 1450.0 ms ✓ FillArrays → FillArraysSparseArraysExt 933.7 ms ✓ FillArrays → FillArraysStatisticsExt 774.3 ms ✓ ADTypes → ADTypesConstructionBaseExt 1830.0 ms ✓ DifferentiationInterface 1290.6 ms ✓ LogExpFunctions 842.8 ms ✓ TableTraits 974.1 ms ✓ Adapt 9355.2 ms ✓ FileIO 1493.8 ms ✓ FillArrays → FillArraysPDMatsExt 886.3 ms ✓ Compat → CompatLinearAlgebraExt 947.6 ms ✓ PrecompileTools 1240.0 ms ✓ JLLWrappers 3052.1 ms ✓ Setfield 2842.1 ms ✓ ColorTypes 1371.0 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 1854.7 ms ✓ Tables 1232.7 ms ✓ ArrayInterface 1312.2 ms ✓ Adapt → AdaptSparseArraysExt 2253.9 ms ✓ FilePathsBase 3991.0 ms ✓ DataStructures 2535.2 ms ✓ BioSymbols 3323.7 ms ✓ StringManipulation 14348.1 ms ✓ SIMD 13910.3 ms ✓ StaticArrays 16555.9 ms ✓ Parsers 1519.4 ms ✓ Libffi_jll 1531.3 ms ✓ LZO_jll 1518.6 ms ✓ Bzip2_jll 1583.0 ms ✓ XZ_jll 1507.6 ms ✓ NLopt_jll 1545.8 ms ✓ Rmath_jll 1506.9 ms ✓ OpenSpecFun_jll 1326.6 ms ✓ Xorg_xtrans_jll 1486.9 ms ✓ libpng_jll 1505.5 ms ✓ iso_codes_jll 1219.9 ms ✓ EpollShim_jll 1347.8 ms ✓ Wayland_protocols_jll 1503.9 ms ✓ Libmount_jll 1509.8 ms ✓ Libuuid_jll 1556.2 ms ✓ FriBidi_jll 1565.7 ms ✓ LERC_jll 1508.5 ms ✓ Git_LFS_jll 1487.4 ms ✓ libsass_jll 1493.9 ms ✓ Gumbo_jll 1433.5 ms ✓ Xorg_libXau_jll 1548.9 ms ✓ OpenSSH_jll 1448.0 ms ✓ hicolor_icon_theme_jll 1447.0 ms ✓ Graphite2_jll 1484.7 ms ✓ LLVMOpenMP_jll 1493.0 ms ✓ Libiconv_jll 1500.9 ms ✓ Xorg_libXdmcp_jll 1508.0 ms ✓ Expat_jll 1546.7 ms ✓ JpegTurbo_jll 1353.8 ms ✓ ColorTypes → StyledStringsExt 8424.4 ms ✓ Colors 769.5 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 1458.1 ms ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 2846.2 ms ✓ FilePathsBase → FilePathsBaseTestExt 1028.5 ms ✓ FilePathsBase → FilePathsBaseMmapExt 1589.9 ms ✓ SortingAlgorithms 2931.7 ms ✓ QuadGK 9638.3 ms ✓ BioSequences 39535.5 ms ✓ PrettyTables 17941.1 ms ✓ Automa 1443.7 ms ✓ StaticArrays → StaticArraysStatisticsExt 1456.3 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1638.6 ms ✓ FillArrays → FillArraysStaticArraysExt 1453.5 ms ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 1366.1 ms ✓ Adapt → AdaptStaticArraysExt 3926.5 ms ✓ JSON 960.3 ms ✓ InlineStrings → ParsersExt 1044.1 ms ✓ CodecBzip2 1480.3 ms ✓ FreeType2_jll 1537.9 ms ✓ Rmath 5182.0 ms ✓ SpecialFunctions 1946.4 ms ✓ Sass 1003.7 ms ✓ Gumbo 1088.6 ms ✓ adwaita_icon_theme_jll 1161.6 ms ✓ Pixman_jll 1426.0 ms ✓ XML2_jll 1433.6 ms ✓ GettextRuntime_jll 1487.4 ms ✓ Xorg_libxcb_jll 1562.4 ms ✓ Git_jll 1530.7 ms ✓ Wayland_jll 1473.8 ms ✓ Libtiff_jll 1386.8 ms ✓ Graphics 10147.8 ms ✓ FlameGraphs 1384.4 ms ✓ FiniteDiff 4911.2 ms ✓ StatsBase 84169.5 ms ✓ DataFrames 19936.4 ms ✓ FASTX 9351.2 ms ✓ Documenter 3184.2 ms ✓ BenchmarkTools 2162.3 ms ✓ WeakRefStrings 1288.1 ms ✓ Fontconfig_jll 1687.2 ms ✓ HypergeometricFunctions 1026.4 ms ✓ DiffRules 1229.8 ms ✓ Glib_jll 1127.2 ms ✓ Xorg_libX11_jll 750.7 ms ✓ Git 1050.2 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 1023.4 ms ✓ FiniteDiff → FiniteDiffSparseArraysExt 998.8 ms ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt 2023.3 ms ✓ FASTX → BioSequencesExt 27401.1 ms ✓ CSV 2883.9 ms ✓ StatsFuns 6108.0 ms ✓ ForwardDiff 1391.1 ms ✓ Graphene_jll 1406.3 ms ✓ Xorg_libXfixes_jll 1512.3 ms ✓ Xorg_libXrender_jll 1363.3 ms ✓ Xorg_libXext_jll 1411.5 ms ✓ Xorg_libxkbfile_jll 1498.3 ms ✓ gdk_pixbuf_jll 4002.6 ms ✓ DocumenterTools 4950.3 ms ✓ StatsModels 9664.1 ms ✓ Distributions 1629.0 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 1352.5 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 75085.9 ms ✓ MathOptInterface 1527.7 ms ✓ Xorg_libXdamage_jll 1524.5 ms ✓ Xorg_libXcursor_jll 1556.8 ms ✓ Xorg_libXrandr_jll 1501.9 ms ✓ Xorg_libXinerama_jll 1522.5 ms ✓ Xorg_libXi_jll 1614.1 ms ✓ Cairo_jll 1603.8 ms ✓ Libglvnd_jll 1537.4 ms ✓ Xorg_xkbcomp_jll 6182.5 ms ✓ GLM 3831.5 ms ✓ Distributions → DistributionsTestExt 1921.5 ms ✓ NLSolversBase 7568.3 ms ✓ NLopt 1638.5 ms ✓ HarfBuzz_jll 1527.9 ms ✓ Libepoxy_jll 1392.9 ms ✓ Xorg_xkeyboard_config_jll 2477.5 ms ✓ LineSearches 29583.1 ms ✓ PhyloNetworks 1534.2 ms ✓ Pango_jll 1424.4 ms ✓ xkbcommon_jll 7207.0 ms ✓ Optim 2597.5 ms ✓ Cairo 1658.4 ms ✓ Librsvg_jll 1620.0 ms ✓ GTK4_jll 6544.1 ms ✓ Optim → OptimMOIExt 51480.3 ms ✓ Gtk4  (julia:876): Gtk-WARNING **: 10:00:58.269: Unable to acquire session bus: Cannot spawn a message bus without a machine-id: Invalid machine ID in /workspace/destdir/var/lib/dbus/machine-id or /etc/machine-id 25847.8 ms ✓ GtkObservables  (julia:885): Gtk-WARNING **: 10:01:32.720: Unable to acquire session bus: Cannot spawn a message bus without a machine-id: Invalid machine ID in /workspace/destdir/var/lib/dbus/machine-id or /etc/machine-id 17862.9 ms ✓ ProfileView 21141.4 ms ✓ PhyNEST 210 dependencies successfully precompiled in 839 seconds. 40 already precompiled. 2 dependencies had output during precompilation: ┌ GtkObservables │ (julia:876): Gtk-WARNING **: 10:00:58.269: Unable to acquire session bus: Cannot spawn a message bus without a machine-id: Invalid machine ID in /workspace/destdir/var/lib/dbus/machine-id or /etc/machine-id └ ┌ ProfileView │ (julia:885): Gtk-WARNING **: 10:01:32.720: Unable to acquire session bus: Cannot spawn a message bus without a machine-id: Invalid machine ID in /workspace/destdir/var/lib/dbus/machine-id or /etc/machine-id └ Precompilation completed after 858.77s ################################################################################ # Testing # Testing PhyNEST Status `/tmp/jl_Rnhn78/Project.toml` [336ed68f] CSV v0.10.15 [a93c6f00] DataFrames v1.8.1 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.123 ⌅ [e30172f5] Documenter v0.27.25 [35a29f4d] DocumenterTools v0.1.21 ⌃ [d3d80556] LineSearches v7.5.1 ⌅ [429524aa] Optim v1.13.3 [115de871] PhyNEST v0.1.12 ⌅ [33ad39ac] PhyloNetworks v0.15.3 [c46f51b8] ProfileView v1.10.2 ⌅ [2913bbd2] StatsBase v0.33.21 [fd094767] Suppressor v0.2.8 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [56ddb016] Logging v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_Rnhn78/Manifest.toml` [47edcb42] ADTypes v1.21.0 [a4c015fc] ANSIColoredPrinters v0.0.1 [1520ce14] AbstractTrees v0.4.5 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [4fba245c] ArrayInterface v7.22.0 [67c07d97] Automa v1.1.0 [6e4b80f9] BenchmarkTools v1.6.3 [47718e42] BioGenerics v0.1.5 [7e6ae17a] BioSequences v3.5.1 [3c28c6f8] BioSymbols v5.2.0 [d1d4a3ce] BitFlags v0.1.9 [fa961155] CEnum v0.5.0 [336ed68f] CSV v0.10.15 [159f3aea] Cairo v1.1.1 [523fee87] CodecBzip2 v0.8.5 [944b1d66] CodecZlib v0.7.8 [3da002f7] ColorTypes v0.12.1 [5ae59095] Colors v0.13.1 [861a8166] Combinatorics v1.1.0 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.16 [31c24e10] Distributions v0.25.123 [ffbed154] DocStringExtensions v0.9.5 ⌅ [e30172f5] Documenter v0.27.25 [35a29f4d] DocumenterTools v0.1.21 [4e289a0a] EnumX v1.0.6 [c2308a5c] FASTX v2.1.7 [5789e2e9] FileIO v1.18.0 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.16.0 [6a86dc24] FiniteDiff v2.29.0 [53c48c17] FixedPointNumbers v0.8.5 [08572546] FlameGraphs v1.1.0 [f6369f11] ForwardDiff v1.3.2 ⌅ [d9f16b24] Functors v0.3.0 ⌃ [38e38edf] GLM v1.8.3 [d7ba0133] Git v1.5.0 [a2bd30eb] Graphics v1.1.3 [9db2cae5] Gtk4 v0.7.12 [8710efd8] GtkObservables v2.2.2 [708ec375] Gumbo v0.8.3 [34004b35] HypergeometricFunctions v0.3.28 ⌅ [b5f81e59] IOCapture v0.2.5 [9b13fd28] IndirectArrays v1.0.0 [842dd82b] InlineStrings v1.4.5 [8197267c] IntervalSets v0.7.13 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 [b964fa9f] LaTeXStrings v1.4.0 [1d6d02ad] LeftChildRightSiblingTrees v0.2.1 ⌃ [d3d80556] LineSearches v7.5.1 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [b8f27783] MathOptInterface v1.49.0 [fdba3010] MathProgBase v0.7.8 [85b6ec6f] MethodAnalysis v1.0.0 [e1d29d7a] Missings v1.2.0 [d8a4904e] MutableArithmetics v1.6.7 ⌅ [d41bc354] NLSolversBase v7.10.0 ⌅ [76087f3c] NLopt v0.6.5 [77ba4419] NaNMath v1.1.3 [510215fc] Observables v0.5.5 ⌅ [429524aa] Optim v1.13.3 [bac558e1] OrderedCollections v1.8.1 ⌃ [90014a1f] PDMats v0.11.35 [69de0a69] Parsers v2.8.3 [115de871] PhyNEST v0.1.12 ⌅ [33ad39ac] PhyloNetworks v0.15.3 [2dfb63ee] PooledArrays v1.4.3 [85a6dd25] PositiveFactorizations v0.2.4 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [08abe8d2] PrettyTables v3.1.2 [c46f51b8] ProfileView v1.10.2 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [d5f540fe] RoundingIntegers v1.1.0 [fdea26ae] SIMD v3.7.2 [322a6be2] Sass v0.2.0 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.9 [efcf1570] Setfield v1.1.2 [1277b4bf] ShiftedArrays v2.0.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.6.1 [90137ffa] StaticArrays v1.9.16 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 ⌅ [2913bbd2] StatsBase v0.33.21 [4c63d2b9] StatsFuns v1.5.2 ⌅ [3eaba693] StatsModels v0.6.33 [892a3eda] StringManipulation v0.4.2 [354b36f9] StringViews v1.3.7 [fd094767] Suppressor v0.2.8 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [3bb67fe8] TranscodingStreams v0.11.3 [7200193e] Twiddle v1.1.2 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [6e34b625] Bzip2_jll v1.0.9+0 [83423d85] Cairo_jll v1.18.5+0 [2702e6a9] EpollShim_jll v0.0.20230411+1 [2e619515] Expat_jll v2.7.3+0 [a3f928ae] Fontconfig_jll v2.17.1+0 [d7e528f0] FreeType2_jll v2.13.4+0 [559328eb] FriBidi_jll v1.0.17+0 [6ebb71f1] GTK4_jll v4.18.6+0 [b0724c58] GettextRuntime_jll v0.22.4+0 [020c3dae] Git_LFS_jll v3.7.0+0 [f8c6e375] Git_jll v2.53.0+0 [7746bdde] Glib_jll v2.86.3+0 [75302f13] Graphene_jll v1.10.8+0 [3b182d85] Graphite2_jll v1.3.15+0 [528830af] Gumbo_jll v0.10.2+0 [2e76f6c2] HarfBuzz_jll v8.5.1+0 [aacddb02] JpegTurbo_jll v3.1.4+0 [88015f11] LERC_jll v4.0.1+0 [1d63c593] LLVMOpenMP_jll v18.1.8+0 [dd4b983a] LZO_jll v2.10.3+0 [42c93a91] Libepoxy_jll v1.5.11+0 ⌅ [e9f186c6] Libffi_jll v3.4.7+0 [7e76a0d4] Libglvnd_jll v1.7.1+1 [94ce4f54] Libiconv_jll v1.18.0+0 [4b2f31a3] Libmount_jll v2.41.3+0 [925c91fb] Librsvg_jll v2.54.7+0 [89763e89] Libtiff_jll v4.7.2+0 [38a345b3] Libuuid_jll v2.41.3+0 [079eb43e] NLopt_jll v2.10.0+0 [9bd350c2] OpenSSH_jll v10.2.1+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [36c8627f] Pango_jll v1.57.0+0 ⌅ [30392449] Pixman_jll v0.44.2+0 [f50d1b31] Rmath_jll v0.5.1+0 [a2964d1f] Wayland_jll v1.24.0+0 [2381bf8a] Wayland_protocols_jll v1.44.0+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [ffd25f8a] XZ_jll v5.8.2+0 [4f6342f7] Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] Xorg_libXau_jll v1.0.13+0 [935fb764] Xorg_libXcursor_jll v1.2.4+0 [0aeada51] Xorg_libXdamage_jll v1.1.6+0 [a3789734] Xorg_libXdmcp_jll v1.1.6+0 [1082639a] Xorg_libXext_jll v1.3.7+0 [d091e8ba] Xorg_libXfixes_jll v6.0.2+0 [a51aa0fd] Xorg_libXi_jll v1.8.3+0 [d1454406] Xorg_libXinerama_jll v1.1.6+0 [ec84b674] Xorg_libXrandr_jll v1.5.5+0 [ea2f1a96] Xorg_libXrender_jll v0.9.12+0 [c7cfdc94] Xorg_libxcb_jll v1.17.1+0 [cc61e674] Xorg_libxkbfile_jll v1.1.3+0 [35661453] Xorg_xkbcomp_jll v1.4.7+0 [33bec58e] Xorg_xkeyboard_config_jll v2.44.0+0 [c5fb5394] Xorg_xtrans_jll v1.6.0+0 [b437f822] adwaita_icon_theme_jll v43.0.1+0 [da03df04] gdk_pixbuf_jll v2.42.13+0 [059c91fe] hicolor_icon_theme_jll v0.18.0+0 [bf975903] iso_codes_jll v4.18.0+0 [b53b4c65] libpng_jll v1.6.54+0 [47bcb7c8] libsass_jll v3.6.6+0 [d8fb68d0] xkbcommon_jll v1.13.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [9abbd945] Profile v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.18.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.30+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Test Summary: | Pass Total Time Testing misc.function get_average | 100 100 1.8s Test Summary: | Pass Total Time Testing site pattern proabilities | 1000 1000 0.2s Test Summary: | Pass Total Time Testing Method-of-moment estimates of speciation times | 1500 1500 0.0s Testing PhyNEST tests passed Testing completed after 50.89s PkgEval succeeded after 972.12s