Package evaluation to load Minc2 on Julia 1.14.0-DEV.1688 (ee54f91d68*) started at 2026-02-10T06:39:08.454


################################################################################
# Set-up
#


Set-up completed after 0.14s


################################################################################
# Installation
#

Installing Minc2...
   Resolving package versions...
    Updating `~/.julia/environments/v1.14/Project.toml`
  [8e6f2f06] + Minc2 v0.1.9
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [79e6a3ab] + Adapt v4.4.0
  [66dad0bd] + AliasTables v1.1.3
  [13072b0f] + AxisAlgorithms v1.1.0
  [d43a6710] + CBinding v1.1.0
  [d360d2e6] + ChainRulesCore v1.26.0
  [944b1d66] + CodecZlib v0.7.8
  [34da2185] + Compat v4.18.1
  [9a962f9c] + DataAPI v1.16.0
  [864edb3b] + DataStructures v0.19.3
  [ffbed154] + DocStringExtensions v0.9.5
  [a98d9a8b] + Interpolations v0.16.2
  [92d709cd] + IrrationalConstants v0.2.6
  [692b3bcd] + JLLWrappers v1.7.1
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [3da0fdf6] + MPIPreferences v0.1.11
  [dbb5928d] + MappedArrays v0.4.3
  [8e6f2f06] + Minc2 v0.1.9
  [e1d29d7a] + Missings v1.2.0
  [a3a9e032] + NIfTI v0.6.1
  [6fe1bfb0] + OffsetArrays v1.17.0
  [bac558e1] + OrderedCollections v1.8.1
  [aea7be01] + PrecompileTools v1.3.3
  [21216c6a] + Preferences v1.5.1
  [43287f4e] + PtrArrays v1.3.0
  [94ee1d12] + Quaternions v0.7.7
  [c84ed2f1] + Ratios v0.4.5
  [c1ae055f] + RealDot v0.1.0
  [ae029012] + Requires v1.3.1
  [6038ab10] + Rotations v1.7.1
  [6c6a2e73] + Scratch v1.3.0
  [a2af1166] + SortingAlgorithms v1.2.2
  [90137ffa] + StaticArrays v1.9.16
  [1e83bf80] + StaticArraysCore v1.4.4
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.8.0
  [2913bbd2] + StatsBase v0.34.10
⌅ [3bb67fe8] + TranscodingStreams v0.9.13
  [efce3f68] + WoodburyMatrices v1.1.0
  [0b7ba130] + Blosc_jll v1.21.7+0
  [6e34b625] + Bzip2_jll v1.0.9+0
⌅ [0ee61d77] + Clang_jll v18.1.7+4
⌅ [0234f1f7] + HDF5_jll v1.14.6+0
  [e33a78d0] + Hwloc_jll v2.12.2+0
  [94ce4f54] + Libiconv_jll v1.18.0+0
  [5ced341a] + Lz4_jll v1.10.1+0
⌅ [7cb0a576] + MPICH_jll v4.3.2+0
  [f1f71cc9] + MPItrampoline_jll v5.5.4+0
  [9237b28f] + MicrosoftMPI_jll v10.1.4+3
  [7243133f] + NetCDF_jll v401.900.300+0
  [fe0851c0] + OpenMPI_jll v5.0.9+0
⌅ [02c8fc9c] + XML2_jll v2.13.9+0
  [ffd25f8a] + XZ_jll v5.8.2+0
  [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0
  [477f73a3] + libaec_jll v1.1.5+0
  [dce2f2bf] + libminc_jll v2.4.7+0
  [337d8026] + libzip_jll v1.11.3+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [f43a241f] + Downloads v1.7.0
  [7b1f6079] + FileWatching v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0
  [4af54fe1] + LazyArtifacts v1.11.0
  [b27032c2] + LibCURL v1.0.0
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.13.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [44cfe95a] + Pkg v1.14.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.0.0
  [9e88b42a] + Serialization v1.11.0
  [1a1011a3] + SharedArrays v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.13.0
  [f489334b] + StyledStrings v1.13.0
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] + LibCURL_jll v8.18.0+0
  [e37daf67] + LibGit2_jll v1.9.2+0
  [29816b5a] + LibSSH2_jll v1.11.3+1
  [14a3606d] + MozillaCACerts_jll v2025.12.2
  [4536629a] + OpenBLAS_jll v0.3.30+0
  [458c3c95] + OpenSSL_jll v3.5.4+0
  [efcefdf7] + PCRE2_jll v10.47.0+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [83775a58] + Zlib_jll v1.3.1+2
  [3161d3a3] + Zstd_jll v1.5.7+1
  [8e850b90] + libblastrampoline_jll v5.15.0+0
  [8e850ede] + nghttp2_jll v1.68.0+1
  [3f19e933] + p7zip_jll v17.7.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 13.41s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...
     Project No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml`
    Manifest No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml`

Precompiling package dependencies...
Precompiling packages...
   1386.4 ms  ✓ Clang_jll
   5178.2 ms  ✓ libminc_jll
ERROR: LoadError: UndefVarError: `libclang_path` not defined in `Clang_jll`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
  [1] getproperty(x::Module, f::Symbol)
    @ Base ./Base_compiler.jl:50
  [2] top-level scope
    @ ~/.julia/packages/CBinding/nBAFM/src/libclang.jl:21
  [3] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:310
  [4] top-level scope
    @ ~/.julia/packages/CBinding/nBAFM/src/CBinding.jl:112
  [5] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
  [6] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3309
  [7] top-level scope
    @ stdin:5
  [8] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
  [9] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:3151
 [10] include_string
    @ ./loading.jl:3161 [inlined]
 [11] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [12] _start()
    @ Base ./client.jl:585
in expression starting at /home/pkgeval/.julia/packages/CBinding/nBAFM/src/libclang.jl:17
in expression starting at /home/pkgeval/.julia/packages/CBinding/nBAFM/src/CBinding.jl:1
in expression starting at stdin:5
              ✗ CBinding
ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("d43a6710-96b8-4a2d-833c-c424785e5374"), "CBinding") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0)
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2861
  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2715
  [4] macro expansion
    @ ./loading.jl:2642 [inlined]
  [5] macro expansion
    @ ./lock.jl:376 [inlined]
  [6] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2606
  [7] require
    @ ./loading.jl:2582 [inlined]
  [8] eval_import_path
    @ ./module.jl:36 [inlined]
  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base ./module.jl:60
 [10] _eval_using
    @ ./module.jl:137 [inlined]
 [11] _eval_using(to::Module, path::Expr)
    @ Base ./module.jl:137
 [12] top-level scope
    @ ~/.julia/packages/Minc2/NU5hz/src/minc2_simple.jl:6
 [13] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:310
 [14] top-level scope
    @ ~/.julia/packages/Minc2/NU5hz/src/Minc2.jl:16
 [15] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [16] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3309
 [17] top-level scope
    @ stdin:5
 [18] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [19] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:3151
 [20] include_string
    @ ./loading.jl:3161 [inlined]
 [21] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [22] _start()
    @ Base ./client.jl:585
in expression starting at /home/pkgeval/.julia/packages/Minc2/NU5hz/src/minc2_simple.jl:3
in expression starting at /home/pkgeval/.julia/packages/Minc2/NU5hz/src/Minc2.jl:1
in expression starting at stdin:5
              ✗ Minc2
  2 dependencies successfully precompiled in 26 seconds. 97 already precompiled.

Precompilation completed after 34.24s


################################################################################
# Loading
#

Loading Minc2...
ERROR: LoadError: UndefVarError: `libclang_path` not defined in `Clang_jll`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
  [1] getproperty(x::Module, f::Symbol)
    @ Base ./Base_compiler.jl:50
  [2] top-level scope
    @ ~/.julia/packages/CBinding/nBAFM/src/libclang.jl:21
  [3] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:310
  [4] top-level scope
    @ ~/.julia/packages/CBinding/nBAFM/src/CBinding.jl:112
  [5] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
  [6] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3309
  [7] top-level scope
    @ stdin:5
  [8] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
  [9] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:3151
 [10] include_string
    @ ./loading.jl:3161 [inlined]
 [11] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [12] _start()
    @ Base ./client.jl:585
in expression starting at /home/pkgeval/.julia/packages/CBinding/nBAFM/src/libclang.jl:17
in expression starting at /home/pkgeval/.julia/packages/CBinding/nBAFM/src/CBinding.jl:1
in expression starting at stdin:5
ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("d43a6710-96b8-4a2d-833c-c424785e5374"), "CBinding") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0)
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2861
  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2715
  [4] macro expansion
    @ ./loading.jl:2642 [inlined]
  [5] macro expansion
    @ ./lock.jl:376 [inlined]
  [6] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2606
  [7] require
    @ ./loading.jl:2582 [inlined]
  [8] eval_import_path
    @ ./module.jl:36 [inlined]
  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base ./module.jl:60
 [10] _eval_using
    @ ./module.jl:137 [inlined]
 [11] _eval_using(to::Module, path::Expr)
    @ Base ./module.jl:137
 [12] top-level scope
    @ ~/.julia/packages/Minc2/NU5hz/src/minc2_simple.jl:6
 [13] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:310
 [14] top-level scope
    @ ~/.julia/packages/Minc2/NU5hz/src/Minc2.jl:16
 [15] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [16] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3309
 [17] top-level scope
    @ stdin:5
 [18] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [19] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:3151
 [20] include_string
    @ ./loading.jl:3161 [inlined]
 [21] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [22] _start()
    @ Base ./client.jl:585
in expression starting at /home/pkgeval/.julia/packages/Minc2/NU5hz/src/minc2_simple.jl:3
in expression starting at /home/pkgeval/.julia/packages/Minc2/NU5hz/src/Minc2.jl:1
in expression starting at stdin:5

  2 dependencies had output during precompilation:
┌ CBinding
│  ERROR: LoadError: UndefVarError: `libclang_path` not defined in `Clang_jll`
│  Suggestion: check for spelling errors or missing imports.
│  Stacktrace:
│    [1] getproperty(x::Module, f::Symbol)
│      @ Base ./Base_compiler.jl:50
│    [2] top-level scope
│      @ ~/.julia/packages/CBinding/nBAFM/src/libclang.jl:21
│    [3] include(mapexpr::Function, mod::Module, _path::String)
│      @ Base ./Base.jl:310
│    [4] top-level scope
│      @ ~/.julia/packages/CBinding/nBAFM/src/CBinding.jl:112
│    [5] include(mod::Module, _path::String)
│      @ Base ./Base.jl:309
│    [6] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
│      @ Base ./loading.jl:3309
│    [7] top-level scope
│      @ stdin:5
│    [8] eval(m::Module, e::Any)
│      @ Core ./boot.jl:489
│    [9] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
│      @ Base ./loading.jl:3151
│   [10] include_string
│      @ ./loading.jl:3161 [inlined]
│   [11] exec_options(opts::Base.JLOptions)
│      @ Base ./client.jl:342
│   [12] _start()
│      @ Base ./client.jl:585
│  in expression starting at /home/pkgeval/.julia/packages/CBinding/nBAFM/src/libclang.jl:17
│  in expression starting at /home/pkgeval/.julia/packages/CBinding/nBAFM/src/CBinding.jl:1
│  in expression starting at stdin:5
└  
┌ Minc2
│  [Output was shown above]
└  
ERROR: The following 2 packages failed to precompile:

CBinding 
Failed to precompile CBinding [d43a6710-96b8-4a2d-833c-c424785e5374] to "/home/pkgeval/.julia/compiled/v1.14/CBinding/jl_pjUbc5" (ProcessExited(1)).

Minc2 
Failed to precompile Minc2 [8e6f2f06-34e2-40fe-8437-e396464d2a7f] to "/home/pkgeval/.julia/compiled/v1.14/Minc2/jl_GXoTu6" (ProcessExited(1)).


Loading failed after 19.87s

ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so -g1 --check-bounds=yes --inline=yes --check-bounds=yes --pkgimages=existing -e 'using Minc2'`, ProcessExited(1)) [1]

Stacktrace:
 [1] pipeline_error
   @ ./process.jl:610 [inlined]
 [2] run(::Cmd; wait::Bool)
   @ Base ./process.jl:525
 [3] run(::Cmd)
   @ Base ./process.jl:522
 [4] top-level scope
   @ /PkgEval.jl/scripts/evaluate.jl:197
 [5] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [6] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [7] _start()
   @ Base ./client.jl:585
in expression starting at /PkgEval.jl/scripts/evaluate.jl:188

PkgEval failed after 97.52s: package fails to precompile