Package evaluation to test CrystalNets on Julia 1.14.0-DEV.1688 (ee54f91d68*) started at 2026-02-10T04:14:32.672 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 12.18s ################################################################################ # Installation # Installing CrystalNets... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [7952bbbe] + CrystalNets v1.1.1 Updating `~/.julia/environments/v1.14/Manifest.toml` [c7e460c6] + ArgParse v1.2.0 [ec485272] + ArnoldiMethod v0.4.0 [a963bdd2] + AtomsBase v0.5.2 [46823bd8] + Chemfiles v0.10.43 [7952bbbe] + CrystalNets v1.1.1 [864edb3b] + DataStructures v0.19.3 [ffbed154] + DocStringExtensions v0.9.5 [86223c79] + Graphs v1.13.4 [d25df0c9] + Inflate v0.1.5 [692b3bcd] + JLLWrappers v1.7.1 [1914dd2f] + MacroTools v0.5.16 [bac558e1] + OrderedCollections v1.8.1 [f305370e] + PeriodicGraphEmbeddings v0.3.3 [72a2d4b8] + PeriodicGraphEquilibriumPlacement v0.2.2 [18c5b727] + PeriodicGraphs v0.10.4 [7b2266bf] + PeriodicTable v1.2.1 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [92933f4c] + ProgressMeter v1.11.0 [ae029012] + Requires v1.3.1 [699a6c99] + SimpleTraits v0.9.5 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [b718987f] + TextWrap v1.0.2 [0796e94c] + Tokenize v0.5.29 [1986cc42] + Unitful v1.28.0 [a7773ee8] + UnitfulAtomic v1.0.0 [78a364fa] + Chemfiles_jll v0.10.4+0 [ac4a9f1e] + spglib_jll v2.7.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.18.0+0 [e37daf67] + LibGit2_jll v1.9.2+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.12.2 [4536629a] + OpenBLAS_jll v0.3.30+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Installation completed after 5.04s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 1568.3 ms ✓ spglib_jll 74557.7 ms ✓ PeriodicGraphs 90033.4 ms ✓ PeriodicGraphEmbeddings 24000.9 ms ✓ PeriodicGraphEquilibriumPlacement 340853.0 ms ✓ CrystalNets 5 dependencies successfully precompiled in 532 seconds. 62 already precompiled. Precompilation completed after 552.21s ################################################################################ # Testing # Testing CrystalNets Status `/tmp/jl_MOozIv/Project.toml` [861a8166] Combinatorics v1.1.0 [7952bbbe] CrystalNets v1.1.1 [86223c79] Graphs v1.13.4 [18c5b727] PeriodicGraphs v0.10.4 [90137ffa] StaticArrays v1.9.16 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_MOozIv/Manifest.toml` [c7e460c6] ArgParse v1.2.0 [ec485272] ArnoldiMethod v0.4.0 [a963bdd2] AtomsBase v0.5.2 [46823bd8] Chemfiles v0.10.43 [861a8166] Combinatorics v1.1.0 [7952bbbe] CrystalNets v1.1.1 [864edb3b] DataStructures v0.19.3 [ffbed154] DocStringExtensions v0.9.5 [86223c79] Graphs v1.13.4 [d25df0c9] Inflate v0.1.5 [692b3bcd] JLLWrappers v1.7.1 [1914dd2f] MacroTools v0.5.16 [bac558e1] OrderedCollections v1.8.1 [f305370e] PeriodicGraphEmbeddings v0.3.3 [72a2d4b8] PeriodicGraphEquilibriumPlacement v0.2.2 [18c5b727] PeriodicGraphs v0.10.4 [7b2266bf] PeriodicTable v1.2.1 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [92933f4c] ProgressMeter v1.11.0 [ae029012] Requires v1.3.1 [699a6c99] SimpleTraits v0.9.5 [90137ffa] StaticArrays v1.9.16 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [b718987f] TextWrap v1.0.2 [0796e94c] Tokenize v0.5.29 [1986cc42] Unitful v1.28.0 [a7773ee8] UnitfulAtomic v1.0.0 [78a364fa] Chemfiles_jll v0.10.4+0 [ac4a9f1e] spglib_jll v2.7.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.18.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.30+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Testing Running tests... The following warning about altering performance, the two messages on warning toggling and the three error statements are expected. [ Warning: Warnings may critically alter performance for this operation and were turned off. [ Info: Use CrystalNets.toggle_warning(false) or the --no-warn option to remove this warning [ Info: Use the force_warn option to force printing warnings [ Error: Very suspicious connectivity found for MIL-100. [ Error: Atom ?, used in a bond, has either zero or multiple placements in CIF file MIL-101. This invalidates all bonds from the file, which will thus be discarded. [ Error: Atom ?, used in a bond, has either zero or multiple placements in CIF file MIL-53. This invalidates all bonds from the file, which will thus be discarded. The following warning about symmetry and the three warnings about 0-dimensional structures are expected. [ Warning: Missing _symmetry_equiv_pos_as_xyz and _space_group_symop_operation_xyz fields, will rely on other symmetry indications. [ Warning: Detected 192 structures of dimension 0 in NOTT-112, possibly complex solvent residues. They will be ignored for topology computation. [ Warning: Detected 40 structures of dimension 0 in FOWWAR, possibly complex solvent residues. They will be ignored for topology computation. [ Warning: Detected 2 structures of dimension 0 in CALFIG, possibly complex solvent residues. They will be ignored for topology computation. The following @error about carbon cycle disorder is expected. [ Info: Initial pass found C with invalid number of bonds. [ Error: Found what looks like a disordered carbon ring for CIZPOS: use of disordered input is not advised, please double-check the detected topology or provide a clean input. [ Info: Initial pass found O and C with invalid number of bonds. Test Summary: | Pass Broken Total Time MOF examples | 74 3 77 20m33.7s [ Warning: Guessing bonds with custom algorithm (from Chemfiles and VMD). This may take a while for big structures and may be inexact. [ Info: To avoid guessing bonds, use a file format that contains the bonds. [ Warning: Detected 6 structures of dimension 0 in Clathrate_hydrate, possibly complex solvent residues. They will be ignored for topology computation. [ Warning: Guessing bonds with custom algorithm (from Chemfiles and VMD). This may take a while for big structures and may be inexact. [ Info: To avoid guessing bonds, use a file format that contains the bonds. [ Warning: Detected 6 structures of dimension 0 in Clathrate_hydrate, possibly complex solvent residues. They will be ignored for topology computation. [ Warning: Missing _symmetry_equiv_pos_as_xyz and _space_group_symop_operation_xyz fields, will rely on other symmetry indications. [ Warning: Guessing bonds with custom algorithm (from Chemfiles and VMD). This may take a while for big structures and may be inexact. [ Info: To avoid guessing bonds, use a file format that contains the bonds. Test Summary: | Pass Total Time Other kinds of structures | 4 4 1.0s [ Info: Checking that all known topologies are recognized (this can take a few minutes). [ Info: Use multiple threads to reduce this time Test Summary: | Pass Total Time Archive | 17494 17494 10m17.3s [ Info: Testing pcu [ Info: Testing afy, AFY [ Info: Testing apc, APC [ Info: Testing bam [ Info: Testing bcf [ Info: Testing cdp [ Info: Testing cnd [ Info: Testing ecb [ Info: Testing fiv [ Info: Testing ftd [ Info: Testing ftj [ Info: Testing ins [ Info: Testing kgt [ Info: Testing mot [ Info: Testing moz [ Info: Testing muh [ Info: Testing pbz [ Info: Testing qom [ Info: Testing sig [ Info: Testing sma [ Info: Testing sod-f [ Info: Testing sod-h [ Info: Testing utj [ Info: Testing utp [ Info: Testing nts [ Info: Testing lth [ Info: Testing cys [ Info: Testing llw-z [ Info: Testing nts Test Summary: | Pass Total Time Module | 31 31 57.5s Test Summary: | Pass Broken Total Time Executable | 29 1 30 9.1s 1 / 36 .................................................................................................... 2 / 36 .................................................................................................... 3 / 36 .................................................................................................... 4 / 36 .................................................................................................... 5 / 36 .................................................................................................... 6 / 36 .................................................................................................... 7 / 36 .................................................................................................... 8 / 36 .................................................................................................... 9 / 36 .................................................................................................... 10 / 36 .................................................................................................... 11 / 36 .................................................................................................... 12 / 36 .................................................................................................... 13 / 36 .................................................................................................... 14 / 36 .................................................................................................... 15 / 36 .................................................................................................... 16 / 36 .................................................................................................... 17 / 36 ......................................... ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 28 running 1 of 1 signal (10): User defined signal 1 gc_sweep_sysimg at /source/src/staticdata.c:2184 gc_sweep_perm_alloc at /source/src/gc-stock.c:1488 [inlined] _jl_gc_collect at /source/src/gc-stock.c:3204 ijl_gc_collect at /source/src/gc-stock.c:3510 maybe_collect at /source/src/gc-stock.c:356 [inlined] jl_gc_small_alloc_inner at /source/src/gc-stock.c:733 jl_gc_small_alloc_noinline at /source/src/gc-stock.c:791 [inlined] jl_gc_alloc_ at /source/src/gc-stock.c:805 jl_alloc_genericmemory_unchecked at /source/src/genericmemory.c:41 GenericMemory at ./boot.jl:615 [inlined] Array at ./boot.jl:675 [inlined] getindex_cols at /source/usr/share/julia/stdlib/v1.14/SparseArrays/src/sparsematrix.jl:2776 getindex at /source/usr/share/julia/stdlib/v1.14/SparseArrays/src/sparsematrix.jl:2800 linsolve! at /home/pkgeval/.julia/packages/PeriodicGraphEquilibriumPlacement/fjnmR/src/solver.jl:309 unknown function (ip: 0x7eef03d53f6e) at (unknown file) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_invoke at /source/src/gf.c:4120 unknown function (ip: 0x7eef04d0993c) at (unknown file) unknown function (ip: 0x7eef04d09a1e) at (unknown file) dixon_p at /home/pkgeval/.julia/packages/PeriodicGraphEquilibriumPlacement/fjnmR/src/solver.jl:442 try_modulo at /home/pkgeval/.julia/packages/PeriodicGraphEquilibriumPlacement/fjnmR/src/solver.jl:487 [inlined] dixon_solve at /home/pkgeval/.julia/packages/PeriodicGraphEquilibriumPlacement/fjnmR/src/solver.jl:507 equilibrium at /home/pkgeval/.julia/packages/PeriodicGraphEquilibriumPlacement/fjnmR/src/embedding.jl:41 CrystalNet at /home/pkgeval/.julia/packages/CrystalNets/BL1Km/src/types.jl:675 UnderlyingNets at /home/pkgeval/.julia/packages/CrystalNets/BL1Km/src/types.jl:1000 topological_genome at /home/pkgeval/.julia/packages/CrystalNets/BL1Km/src/query.jl:86 [inlined] #topological_genome#222 at /home/pkgeval/.julia/packages/CrystalNets/BL1Km/src/query.jl:90 [inlined] topological_genome at /home/pkgeval/.julia/packages/CrystalNets/BL1Km/src/query.jl:90 unknown function (ip: 0x7eeec504e11c) at (unknown file) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4310 jl_apply at /source/src/julia.h:2285 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 eval_body at /source/src/interpreter.c:550 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 ijl_eval_thunk at /source/src/toplevel.c:765 jl_toplevel_eval_flex at /source/src/toplevel.c:712 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_toplevel_eval_flex at /source/src/toplevel.c:684 ijl_toplevel_eval at /source/src/toplevel.c:779 ijl_toplevel_eval_in at /source/src/toplevel.c:824 eval at ./boot.jl:489 include_string at ./loading.jl:3151 _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4310 _include at ./loading.jl:3211 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 jfptr_IncludeInto_1.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4310 jl_apply at /source/src/julia.h:2285 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 ijl_eval_thunk at /source/src/toplevel.c:765 jl_toplevel_eval_flex at /source/src/toplevel.c:712 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_toplevel_eval_flex at /source/src/toplevel.c:684 ijl_toplevel_eval at /source/src/toplevel.c:779 ijl_toplevel_eval_in at /source/src/toplevel.c:824 eval at ./boot.jl:489 exec_options at ./client.jl:310 _start at ./client.jl:585 jfptr__start_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4310 jl_apply at /source/src/julia.h:2285 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7eef29521249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007eef0effc010 Total snapshots: 54. Utilization: 100% ╎52 @Base/client.jl:585 _start() ╎ 52 @Base/client.jl:310 exec_options(opts::Base.JLOptions) ╎ 52 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ 52 @Base/Base.jl:311 (::Base.IncludeInto)(fname::String) ╎ 52 @Base/Base.jl:310 include(mapexpr::Function, mod::Module, _path::Stri… ╎ 52 @Base/loading.jl:3211 _include(mapexpr::Function, mod::Module, _path… ╎ ╎ 52 @Base/loading.jl:3151 include_string(mapexpr::typeof(identity), mod… ╎ ╎ 52 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ ╎ 52 @CrystalNets/…query.jl:90 topological_genome(g::PeriodicGraph3D) ╎ ╎ 52 @CrystalNets/…uery.jl:90 #topological_genome#222 ╎ ╎ 6 @CrystalNets/…uery.jl:86 topological_genome ╎ ╎ ╎ 6 @CrystalNets/…pes.jl:1000 UnderlyingNets(g::PeriodicGraph3D, o… ╎ ╎ ╎ 6 @CrystalNets/…pes.jl:675 (CrystalNet3D)(cell::PeriodicGraphEm… ╎ ╎ ╎ 6 @PeriodicGraphEquilibriumPlacement/…:41 equilibrium(g::Perio… ╎ ╎ ╎ 6 @PeriodicGraphEquilibriumPlacement/…:507 dixon_solve(::Val{… ╎ ╎ ╎ 6 @PeriodicGraphEquilibriumPlacement/…:487 try_modulo ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:441 dixon_p(::Val{3}… ╎ ╎ ╎ ╎ 1 @LinearAlgebra/…jl:116 * ╎ ╎ ╎ ╎ 1 @LinearAlgebra/…l:119 mul ╎ ╎ ╎ ╎ 1 @LinearAlgebra/…l:123 _mul ╎ ╎ ╎ ╎ 1 @LinearAlgebra/…:270 mul! ╎ ╎ ╎ ╎ ╎ 1 @LinearAlgebra/…:302 mul! ╎ ╎ ╎ ╎ ╎ 1 @LinearAlgebra/…:333 _mul! ╎ ╎ ╎ ╎ ╎ 1 @LinearAlgebra/…:348 generic_matmatmul_wrapper! ╎ ╎ ╎ ╎ ╎ 1 @SparseArrays/…:50 generic_matmatmul! ╎ ╎ ╎ ╎ ╎ 1 @SparseArrays/…:60 spdensemul! ╎ ╎ ╎ ╎ ╎ ╎ 1 @SparseArrays/…:91 _spmatmul!(C::Matrix{BigInt}… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:563 * ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:562 * ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:201 mul_si(a::BigInt, b::Int64) ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:69 BigInt ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:70 _ 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:157 init2! ╎ ╎ ╎ ╎ 3 @PeriodicGraphEquilibriumPlacement/…:442 dixon_p(::Val{3}… ╎ ╎ ╎ ╎ 2 @PeriodicGraphEquilibriumPlacement/…:309 linsolve!(F::Li… ╎ ╎ ╎ ╎ 2 @SparseArrays/…jl:2800 getindex(A::SparseArrays.SparseM… ╎ ╎ ╎ ╎ 2 @SparseArrays/…l:2785 getindex_cols(A::SparseArrays.Sp… ╎ ╎ ╎ ╎ 1 @Base/array.jl:1020 setindex! ╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:1025 _setindex! 1╎ ╎ ╎ ╎ 1 @Base/…ntials.jl:1003 getindex ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:311 linsolve!(F::Li… ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:271 forward_substi… 1╎ ╎ ╎ ╎ 1 @Base/…ntials.jl:1003 getindex ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:444 dixon_p(::Val{3}… ╎ ╎ ╎ ╎ 1 @Base/broadcast.jl:901 materialize! ╎ ╎ ╎ ╎ 1 @Base/…oadcast.jl:904 materialize! ╎ ╎ ╎ ╎ 1 @Base/…oadcast.jl:946 copyto! ╎ ╎ ╎ ╎ 1 @Base/…adcast.jl:993 copyto! ╎ ╎ ╎ ╎ ╎ 1 @Base/…mdloop.jl:77 macro expansion ╎ ╎ ╎ ╎ ╎ 1 @Base/…adcast.jl:994 macro expansion ╎ ╎ ╎ ╎ ╎ 1 @Base/…ional.jl:774 setindex! ╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:1030 setindex! ╎ ╎ ╎ ╎ ╎ 1 @Base/number.jl:7 convert ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:315 BigInt ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:218 set_si(a::Int32) ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:69 BigInt ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:70 _ 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:157 init2! ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:455 dixon_p(::Val{3}… 1╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:404 _inner_dixon_p!… ╎ ╎ 46 @CrystalNets/…uery.jl:87 topological_genome ╎ ╎ ╎ 46 @CrystalNets/…ery.jl:153 topological_genome(group::UnderlyingN… ╎ ╎ ╎ 4 @CrystalNets/…ery.jl:22 topological_genome(net::CrystalNet3D{… ╎ ╎ ╎ 4 @CrystalNets/…ty.jl:232 collision_nodes(net::CrystalNet3D{Ra… ╎ ╎ ╎ 4 @CrystalNets/…ty.jl:87 get_CollisionList(g::PeriodicGraph3D… ╎ ╎ ╎ 4 @CrystalNets/…ty.jl:28 get_CollisionNode(g::PeriodicGraph3… ╎ ╎ ╎ ╎ 1 @Base/array.jl:828 collect(itr::Base.Generator{UnitRange{… ╎ ╎ ╎ ╎ 1 @Base/generator.jl:48 iterate ╎ ╎ ╎ ╎ 1 none:? #get_CollisionNode##0 ╎ ╎ ╎ ╎ 1 @PeriodicGraphs/…:148 coordination_sequence(g::Periodi… ╎ ╎ ╎ ╎ 1 @PeriodicGraphs/…:110 _neighborhood(g::PeriodicGraph3… ╎ ╎ ╎ ╎ ╎ 1 @Base/…tarray.jl:1245 iterate ╎ ╎ ╎ ╎ ╎ 1 @Base/…array.jl:1253 _iterate_abstractarray ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphs/…:340 getindex 1╎ ╎ ╎ ╎ ╎ 1 @Base/…ials.jl:1003 getindex ╎ ╎ ╎ ╎ 3 @Base/array.jl:838 collect(itr::Base.Generator{UnitRange{… ╎ ╎ ╎ ╎ 3 @Base/array.jl:864 collect_to_with_first! ╎ ╎ ╎ ╎ 3 @Base/array.jl:886 collect_to! ╎ ╎ ╎ ╎ 3 @Base/…nerator.jl:48 iterate ╎ ╎ ╎ ╎ 3 none:? #get_CollisionNode##0 ╎ ╎ ╎ ╎ ╎ 3 @PeriodicGraphs/…:148 coordination_sequence(g::Perio… ╎ ╎ ╎ ╎ ╎ 2 @PeriodicGraphs/…:101 _neighborhood(g::PeriodicGrap… ╎ ╎ ╎ ╎ ╎ 1 @Base/…array.jl:758 append! ╎ ╎ ╎ ╎ ╎ 1 @Base/…array.jl:103 length 1╎ ╎ ╎ ╎ ╎ 1 @Base/…piler.jl:57 getproperty ╎ ╎ ╎ ╎ ╎ 1 @Base/…array.jl:765 append! ╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:1205 _growend! ╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:1181 _growend_internal!(a::Vector… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:1101 array_new_memory 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/boot.jl:615 GenericMemory ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphs/…:107 _neighborhood(g::PeriodicGrap… ╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:1345 push! ╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:1348 _push! 1╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:1202 _growend! ╎ ╎ ╎ 1 @CrystalNets/…ery.jl:34 topological_genome(net::CrystalNet3D{… ╎ ╎ ╎ 1 @CrystalNets/…on.jl:274 minimize ╎ ╎ ╎ 1 @CrystalNets/…on.jl:287 minimize_unstable ╎ ╎ ╎ 1 @CrystalNets/…n.jl:796 find_first_valid_translation_unstab… ╎ ╎ ╎ ╎ 1 @CrystalNets/…y.jl:251 (::CrystalNets.CheckSymmetryWithCo… ╎ ╎ ╎ ╎ 1 @PeriodicGraphEmbeddings/…:392 check_valid_symmetry(pge:… ╎ ╎ ╎ ╎ 1 @PeriodicGraphEmbeddings/…:343 _find_closest_point_afte… ╎ ╎ ╎ ╎ 1 @Base/…oadcast.jl:901 materialize! ╎ ╎ ╎ ╎ 1 @Base/…adcast.jl:904 materialize! ╎ ╎ ╎ ╎ ╎ 1 @StaticArrays/…l:63 copyto! ╎ ╎ ╎ ╎ ╎ 1 @StaticArrays/…l:70 _copyto! ╎ ╎ ╎ ╎ ╎ 1 @StaticArrays/…:143 _broadcast! ╎ ╎ ╎ ╎ ╎ 1 @StaticArrays/…:158 macro expansion ╎ ╎ ╎ ╎ ╎ 1 @Base/…onal.jl:404 - ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…onal.jl:61 divgcd(x::Int64, y::Int64) ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:269 div 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:343 div ╎ ╎ ╎ 41 @CrystalNets/…ery.jl:56 topological_genome(net::CrystalNet3D{… ╎ ╎ ╎ 41 @CrystalNets/…ery.jl:63 topological_genome(net::CrystalNet3D… ╎ ╎ ╎ 1 @CrystalNets/…gy.jl:661 topological_key(net::CrystalNet3D{R… ╎ ╎ ╎ 1 @CrystalNets/…y.jl:297 find_candidates(net::CrystalNet3D{R… ╎ ╎ ╎ ╎ 1 @CrystalNets/…y.jl:436 find_candidates_onlyneighbors(net:… ╎ ╎ ╎ ╎ 1 @CrystalNets/…s.jl:359 issingular(x::SMatrix{3, 3, Ratio… ╎ ╎ ╎ ╎ 1 @Base/rational.jl:103 // 1╎ ╎ ╎ ╎ 1 @Base/rational.jl:59 divgcd(x::Int64, y::Int64) ╎ ╎ ╎ 13 @CrystalNets/…gy.jl:669 topological_key(net::CrystalNet3D{R… ╎ ╎ ╎ 13 @CrystalNets/…y.jl:112 candidate_key ╎ ╎ ╎ ╎ 2 @CrystalNets/…y.jl:127 candidate_key(net::CrystalNet3D{Ra… ╎ ╎ ╎ ╎ 2 @StaticArrays/….jl:5 inv ╎ ╎ ╎ ╎ 1 @StaticArrays/….jl:25 _inv ╎ ╎ ╎ ╎ 1 @StaticArrays/…jl:193 cross ╎ ╎ ╎ ╎ 1 @StaticArrays/…l:199 _cross ╎ ╎ ╎ ╎ ╎ 1 @Base/…tional.jl:442 * ╎ ╎ ╎ ╎ ╎ 1 @Base/checked.jl:297 checked_mul ╎ ╎ ╎ ╎ ╎ 1 @Base/…ecked.jl:268 mul_with_overflow(x::Int128, y… ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:336 fld ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:366 div ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:325 div 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:1045 div ╎ ╎ ╎ ╎ 1 @StaticArrays/….jl:26 _inv ╎ ╎ ╎ ╎ 1 @StaticArrays/…jl:209 bilinear_vecdot ╎ ╎ ╎ ╎ 1 @StaticArrays/…l:221 _vecdot ╎ ╎ ╎ ╎ ╎ 1 @Base/…mdloop.jl:77 macro expansion ╎ ╎ ╎ ╎ ╎ 1 @StaticArrays/…l:222 macro expansion ╎ ╎ ╎ ╎ ╎ 1 @Base/…ional.jl:442 * 1╎ ╎ ╎ ╎ ╎ 1 @Base/…ecked.jl:297 checked_mul ╎ ╎ ╎ ╎ 3 @CrystalNets/…y.jl:133 candidate_key(net::CrystalNet3D{Ra… ╎ ╎ ╎ ╎ 2 @Base/broadcast.jl:893 materialize ╎ ╎ ╎ ╎ 2 @StaticArrays/….jl:60 copy ╎ ╎ ╎ ╎ 2 @StaticArrays/…jl:119 _broadcast ╎ ╎ ╎ ╎ 2 @StaticArrays/…l:123 __broadcast ╎ ╎ ╎ ╎ ╎ 2 @StaticArrays/…l:135 macro expansion ╎ ╎ ╎ ╎ ╎ 2 @Base/…adcast.jl:357 #flatten##0 ╎ ╎ ╎ ╎ ╎ 2 @Base/…dcast.jl:405 prepare_args ╎ ╎ ╎ ╎ ╎ 2 @Base/…dcast.jl:401 #_make_makeargs1##0 ╎ ╎ ╎ ╎ ╎ 1 @Base/…onal.jl:404 - ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…onal.jl:60 divgcd(x::Int64, y::Int64) ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…uncs.jl:63 gcd ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…uncs.jl:87 _gcd ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:580 >> 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:574 >> ╎ ╎ ╎ ╎ ╎ 1 @Base/…onal.jl:405 - ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…onal.jl:48 Rational ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…onal.jl:43 Rational ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…onal.jl:60 divgcd(x::Int64, y::Int64) ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ncs.jl:63 gcd ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ncs.jl:93 _gcd ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:582 << 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:575 << ╎ ╎ ╎ ╎ 1 @StaticArrays/….jl:10 * ╎ ╎ ╎ ╎ 1 @StaticArrays/….jl:89 _mul ╎ ╎ ╎ ╎ 1 @StaticArrays/…jl:108 macro expansion ╎ ╎ ╎ ╎ 1 @Base/…tional.jl:440 * 1╎ ╎ ╎ ╎ ╎ 1 @Base/…tional.jl:61 divgcd(x::Int64, y::Int64) ╎ ╎ ╎ ╎ 3 @CrystalNets/…y.jl:136 candidate_key(net::CrystalNet3D{Ra… ╎ ╎ ╎ ╎ 1 @Base/…oadcast.jl:893 materialize ╎ ╎ ╎ ╎ 1 @Base/…oadcast.jl:918 copy ╎ ╎ ╎ ╎ 1 @Base/…oadcast.jl:227 similar ╎ ╎ ╎ ╎ 1 @Base/…adcast.jl:228 similar ╎ ╎ ╎ ╎ ╎ 1 @Base/…tarray.jl:876 similar ╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:409 similar ╎ ╎ ╎ ╎ ╎ 1 @Base/…array.jl:877 similar ╎ ╎ ╎ ╎ ╎ 1 @Base/boot.jl:696 Array ╎ ╎ ╎ ╎ ╎ 1 @Base/boot.jl:688 Array 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/boot.jl:676 Array ╎ ╎ ╎ ╎ 1 @Base/…nsional.jl:1752 unique ╎ ╎ ╎ ╎ 1 @Base/…nsional.jl:1752 #unique#543 ╎ ╎ ╎ ╎ 1 @Base/…sional.jl:1754 _unique_dims ╎ ╎ ╎ ╎ 1 @Base/set.jl:230 unique(itr::Vector{Int64}) ╎ ╎ ╎ ╎ ╎ 1 @Base/set.jl:131 in! ╎ ╎ ╎ ╎ ╎ 1 @Base/dict.jl:268 ht_keyindex2_shorthash!(h::Dict{I… 1╎ ╎ ╎ ╎ ╎ 1 @Base/…mpiler.jl:57 getproperty ╎ ╎ ╎ ╎ 1 @Base/sort.jl:1782 sort ╎ ╎ ╎ ╎ 1 @Base/sort.jl:1782 #sort#25 ╎ ╎ ╎ ╎ 1 @Base/…tarray.jl:1211 copymutable ╎ ╎ ╎ ╎ 1 @Base/array.jl:402 similar ╎ ╎ ╎ ╎ ╎ 1 @Base/boot.jl:675 Array 1╎ ╎ ╎ ╎ ╎ 1 @Base/boot.jl:615 GenericMemory ╎ ╎ ╎ ╎ 2 @CrystalNets/…y.jl:152 candidate_key(net::CrystalNet3D{Ra… ╎ ╎ ╎ ╎ 2 @StaticArrays/….jl:10 * ╎ ╎ ╎ ╎ 2 @StaticArrays/….jl:89 _mul ╎ ╎ ╎ ╎ 2 @StaticArrays/…jl:108 macro expansion ╎ ╎ ╎ ╎ 1 @Base/…motion.jl:485 muladd ╎ ╎ ╎ ╎ ╎ 1 @Base/…motion.jl:631 muladd ╎ ╎ ╎ ╎ ╎ 1 @Base/…tional.jl:396 +(x::Rational{Int128}, y::Rati… ╎ ╎ ╎ ╎ ╎ 1 @Base/…ecked.jl:297 checked_mul 1╎ ╎ ╎ ╎ ╎ 1 @Base/…ecked.jl:264 mul_with_overflow(x::Int128, … ╎ ╎ ╎ ╎ 1 @Base/…tional.jl:442 * ╎ ╎ ╎ ╎ ╎ 1 @Base/checked.jl:297 checked_mul ╎ ╎ ╎ ╎ ╎ 1 @Base/checked.jl:268 mul_with_overflow(x::Int128, y… ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:337 cld ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:376 div ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:325 div 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:1045 div ╎ ╎ ╎ ╎ 2 @CrystalNets/…y.jl:156 candidate_key(net::CrystalNet3D{Ra… ╎ ╎ ╎ ╎ 2 @Base/broadcast.jl:893 materialize ╎ ╎ ╎ ╎ 2 @StaticArrays/….jl:60 copy ╎ ╎ ╎ ╎ 2 @StaticArrays/…jl:119 _broadcast ╎ ╎ ╎ ╎ 2 @StaticArrays/…l:123 __broadcast ╎ ╎ ╎ ╎ ╎ 2 @StaticArrays/…l:135 macro expansion ╎ ╎ ╎ ╎ ╎ 1 @Base/…tional.jl:404 - 1╎ ╎ ╎ ╎ ╎ 1 @Base/…tional.jl:59 divgcd(x::Int64, y::Int64) ╎ ╎ ╎ ╎ ╎ 1 @Base/…tional.jl:405 - ╎ ╎ ╎ ╎ ╎ 1 @Base/…ecked.jl:297 checked_mul 1╎ ╎ ╎ ╎ ╎ 1 @Base/…ecked.jl:244 mul_with_overflow ╎ ╎ ╎ ╎ 1 @CrystalNets/…y.jl:168 candidate_key(net::CrystalNet3D{Ra… ╎ ╎ ╎ ╎ 1 @CrystalNets/…s.jl:32 macro expansion ╎ ╎ ╎ ╎ 1 @Base/set.jl:570 allunique ╎ ╎ ╎ ╎ 1 @Base/set.jl:538 _hashed_allunique(C::Vector{Tuple{Int… 1╎ ╎ ╎ ╎ 1 @Base/set.jl:131 in! ╎ ╎ ╎ 27 @CrystalNets/…gy.jl:684 topological_key(net::CrystalNet3D{R… ╎ ╎ ╎ 4 @CrystalNets/…y.jl:402 topological_key_unstable(net::Cryst… ╎ ╎ ╎ ╎ 3 @CrystalNets/…y.jl:152 candidate_key(net::CrystalNet3D{Ra… ╎ ╎ ╎ ╎ 1 @Base/broadcast.jl:893 materialize ╎ ╎ ╎ ╎ 1 @StaticArrays/….jl:60 copy ╎ ╎ ╎ ╎ 1 @StaticArrays/…jl:119 _broadcast ╎ ╎ ╎ ╎ 1 @StaticArrays/…l:123 __broadcast ╎ ╎ ╎ ╎ ╎ 1 @StaticArrays/…l:135 macro expansion ╎ ╎ ╎ ╎ ╎ 1 @Base/…adcast.jl:357 #flatten##0 ╎ ╎ ╎ ╎ ╎ 1 @Base/…ional.jl:405 -(x::Rational{Int128}, y::Rati… ╎ ╎ ╎ ╎ ╎ 1 @Base/…ecked.jl:297 checked_mul ╎ ╎ ╎ ╎ ╎ 1 @Base/…cked.jl:268 mul_with_overflow(x::Int128, … ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:336 fld ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:366 div ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:325 div 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:1045 div ╎ ╎ ╎ ╎ 2 @StaticArrays/….jl:10 * ╎ ╎ ╎ ╎ 2 @StaticArrays/….jl:89 _mul ╎ ╎ ╎ ╎ 2 @StaticArrays/…jl:108 macro expansion ╎ ╎ ╎ ╎ 2 @Base/…motion.jl:485 muladd ╎ ╎ ╎ ╎ ╎ 2 @Base/…motion.jl:631 muladd ╎ ╎ ╎ ╎ ╎ 1 @Base/…tional.jl:441 * ╎ ╎ ╎ ╎ ╎ 1 @Base/…tional.jl:60 divgcd(x::Int128, y::Int128) ╎ ╎ ╎ ╎ ╎ 1 @Base/…funcs.jl:63 gcd ╎ ╎ ╎ ╎ ╎ 1 @Base/…funcs.jl:93 _gcd ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:582 << 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:575 << ╎ ╎ ╎ ╎ ╎ 1 @Base/…tional.jl:396 +(x::Rational{Int128}, y::Rati… ╎ ╎ ╎ ╎ ╎ 1 @Base/…ecked.jl:297 checked_mul ╎ ╎ ╎ ╎ ╎ 1 @Base/…ecked.jl:268 mul_with_overflow(x::Int128, … ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:336 fld ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:366 div ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:325 div 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:1045 div ╎ ╎ ╎ ╎ 1 @CrystalNets/…y.jl:168 candidate_key(net::CrystalNet3D{Ra… ╎ ╎ ╎ ╎ 1 @CrystalNets/…s.jl:32 macro expansion ╎ ╎ ╎ ╎ 1 @Base/set.jl:570 allunique ╎ ╎ ╎ ╎ 1 @Base/set.jl:538 _hashed_allunique(C::Vector{Tuple{Int… ╎ ╎ ╎ ╎ 1 @Base/set.jl:131 in! ╎ ╎ ╎ ╎ ╎ 1 @Base/dict.jl:275 ht_keyindex2_shorthash!(h::Dict{Tu… 1╎ ╎ ╎ ╎ ╎ 1 @Base/…mpiler.jl:57 getproperty ╎ ╎ ╎ 22 @CrystalNets/…y.jl:403 topological_key_unstable(net::Cryst… ╎ ╎ ╎ ╎ 1 @CrystalNets/…y.jl:341 candidate_key_unstable(net::Crysta… ╎ ╎ ╎ ╎ 1 @Base/…oadcast.jl:1249 dotview ╎ ╎ ╎ ╎ 1 @Base/views.jl:236 maybeview ╎ ╎ ╎ ╎ 1 @Base/subarray.jl:216 view ╎ ╎ ╎ ╎ 1 @Base/…tarray.jl:702 checkbounds ╎ ╎ ╎ ╎ ╎ 1 @Base/…tarray.jl:692 checkbounds ╎ ╎ ╎ ╎ ╎ 1 @Base/…tarray.jl:760 checkindex ╎ ╎ ╎ ╎ ╎ 1 @Base/…array.jl:757 checkindex 1╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:559 < ╎ ╎ ╎ ╎ 1 @CrystalNets/…y.jl:351 candidate_key_unstable(net::Crysta… ╎ ╎ ╎ ╎ 1 @StaticArrays/….jl:5 inv ╎ ╎ ╎ ╎ 1 @StaticArrays/….jl:30 _inv ╎ ╎ ╎ ╎ 1 @StaticArrays/…jl:193 cross ╎ ╎ ╎ ╎ 1 @StaticArrays/…l:199 _cross ╎ ╎ ╎ ╎ ╎ 1 @Base/…tional.jl:404 -(x::Rational{Int128}, y::Ratio… ╎ ╎ ╎ ╎ ╎ 1 @Base/…tional.jl:60 divgcd(x::Int128, y::Int128) ╎ ╎ ╎ ╎ ╎ 1 @Base/…tfuncs.jl:63 gcd ╎ ╎ ╎ ╎ ╎ 1 @Base/…funcs.jl:82 _gcd 1╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:487 trailing_zeros ╎ ╎ ╎ ╎ 11 @CrystalNets/…y.jl:356 candidate_key_unstable(net::Crysta… ╎ ╎ ╎ ╎ 11 @StaticArrays/….jl:10 * ╎ ╎ ╎ ╎ 11 @StaticArrays/….jl:89 _mul ╎ ╎ ╎ ╎ 11 @StaticArrays/…jl:108 macro expansion ╎ ╎ ╎ ╎ 10 @Base/…motion.jl:485 muladd ╎ ╎ ╎ ╎ ╎ 10 @Base/…motion.jl:631 muladd ╎ ╎ ╎ ╎ ╎ 1 @Base/…tional.jl:441 * ╎ ╎ ╎ ╎ ╎ 1 @Base/…tional.jl:61 divgcd(x::Int128, y::Int128) ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:269 div 1╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:1046 div ╎ ╎ ╎ ╎ ╎ 2 @Base/…tional.jl:442 * ╎ ╎ ╎ ╎ ╎ 2 @Base/…ecked.jl:297 checked_mul ╎ ╎ ╎ ╎ ╎ 2 @Base/…ecked.jl:268 mul_with_overflow(x::Int128, … ╎ ╎ ╎ ╎ ╎ 2 @Base/div.jl:336 fld ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/div.jl:366 div ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/div.jl:325 div 2╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/int.jl:1045 div 1╎ ╎ ╎ ╎ ╎ 1 @Base/…tional.jl:0 +(x::Rational{Int128}, y::Ration… ╎ ╎ ╎ ╎ ╎ 1 @Base/…tional.jl:395 +(x::Rational{Int128}, y::Rati… ╎ ╎ ╎ ╎ ╎ 1 @Base/…tional.jl:61 divgcd(x::Int128, y::Int128) ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:269 div 1╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:1046 div ╎ ╎ ╎ ╎ ╎ 5 @Base/…tional.jl:396 +(x::Rational{Int128}, y::Rati… ╎ ╎ ╎ ╎ ╎ 5 @Base/…ecked.jl:297 checked_mul ╎ ╎ ╎ ╎ ╎ 5 @Base/…ecked.jl:268 mul_with_overflow(x::Int128, … ╎ ╎ ╎ ╎ ╎ 3 @Base/div.jl:337 cld ╎ ╎ ╎ ╎ ╎ ╎ 3 @Base/div.jl:376 div ╎ ╎ ╎ ╎ ╎ ╎ 3 @Base/div.jl:325 div 3╎ ╎ ╎ ╎ ╎ ╎ 3 @Base/int.jl:1045 div ╎ ╎ ╎ ╎ ╎ 2 @Base/div.jl:336 fld ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/div.jl:366 div ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/div.jl:325 div 2╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/int.jl:1045 div ╎ ╎ ╎ ╎ 1 @Base/…tional.jl:442 * ╎ ╎ ╎ ╎ ╎ 1 @Base/checked.jl:297 checked_mul ╎ ╎ ╎ ╎ ╎ 1 @Base/checked.jl:268 mul_with_overflow(x::Int128, y… ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:336 fld ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:366 div ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:325 div 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:1045 div ╎ ╎ ╎ ╎ 4 @CrystalNets/…y.jl:358 candidate_key_unstable(net::Crysta… ╎ ╎ ╎ ╎ 4 @Base/broadcast.jl:893 materialize ╎ ╎ ╎ ╎ 4 @StaticArrays/….jl:60 copy ╎ ╎ ╎ ╎ 4 @StaticArrays/…jl:119 _broadcast ╎ ╎ ╎ ╎ 4 @StaticArrays/…l:123 __broadcast ╎ ╎ ╎ ╎ ╎ 4 @StaticArrays/…l:135 macro expansion 1╎ ╎ ╎ ╎ ╎ 1 @Base/checked.jl:264 mul_with_overflow(x::Int128, y… ╎ ╎ ╎ ╎ ╎ 1 @Base/…tional.jl:404 -(x::Rational{Int128}, y::Rati… ╎ ╎ ╎ ╎ ╎ 1 @Base/…tional.jl:60 divgcd(x::Int128, y::Int128) ╎ ╎ ╎ ╎ ╎ 1 @Base/…funcs.jl:63 gcd ╎ ╎ ╎ ╎ ╎ 1 @Base/…funcs.jl:89 _gcd 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:487 trailing_zeros ╎ ╎ ╎ ╎ ╎ 2 @Base/…tional.jl:405 -(x::Rational{Int128}, y::Rati… 1╎ ╎ ╎ ╎ ╎ 2 @Base/…ecked.jl:297 checked_mul ╎ ╎ ╎ ╎ ╎ 1 @Base/…ecked.jl:268 mul_with_overflow(x::Int128, … ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:336 fld ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:366 div ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:325 div 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:1045 div ╎ ╎ ╎ ╎ 3 @CrystalNets/…y.jl:359 candidate_key_unstable(net::Crysta… ╎ ╎ ╎ ╎ 3 @Base/array.jl:1345 push! ╎ ╎ ╎ ╎ 3 @Base/array.jl:1348 _push! ╎ ╎ ╎ ╎ 3 @Base/array.jl:1205 _growend! ╎ ╎ ╎ ╎ 3 @Base/array.jl:1181 _growend_internal!(a::Vector{Tupl… ╎ ╎ ╎ ╎ ╎ 3 @Base/array.jl:1101 array_new_memory 3╎ ╎ ╎ ╎ ╎ 3 @Base/boot.jl:615 GenericMemory ╎ ╎ ╎ ╎ 2 @CrystalNets/…y.jl:362 candidate_key_unstable(net::Crysta… ╎ ╎ ╎ ╎ 2 @CrystalNets/…s.jl:32 macro expansion ╎ ╎ ╎ ╎ 2 @Base/set.jl:570 allunique ╎ ╎ ╎ ╎ 2 @Base/set.jl:538 _hashed_allunique(C::Vector{Tuple{Int… ╎ ╎ ╎ ╎ 2 @Base/set.jl:131 in! ╎ ╎ ╎ ╎ ╎ 2 @Base/dict.jl:276 ht_keyindex2_shorthash!(h::Dict{Tu… ╎ ╎ ╎ ╎ ╎ 1 @Base/dict.jl:129 hashindex ╎ ╎ ╎ ╎ ╎ 1 @Base/hashing.jl:40 hash ╎ ╎ ╎ ╎ ╎ 1 @Base/tuple.jl:575 hash ╎ ╎ ╎ ╎ ╎ 1 @Base/tuple.jl:575 hash ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/tuple.jl:575 hash ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…nal.jl:2110 hash ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…nal.jl:2075 hash_shaped ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…al.jl:2085 hash_shaped 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…al.jl:2072 union_split ╎ ╎ ╎ ╎ ╎ 1 @Base/dict.jl:130 hashindex 1╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:87 + ╎ ╎ ╎ 1 @CrystalNets/…y.jl:422 topological_key_unstable(net::Cryst… ╎ ╎ ╎ ╎ 1 @Base/sort.jl:1734 sort! ╎ ╎ ╎ ╎ 1 @Base/sort.jl:1741 #sort!#24 ╎ ╎ ╎ ╎ 1 @Base/sort.jl:1594 _sort! ╎ ╎ ╎ ╎ 1 @Base/sort.jl:561 _sort! ╎ ╎ ╎ ╎ 1 @Base/sort.jl:686 _sort! ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:747 _sort! ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:802 _sort! ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:731 _sort! ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:780 _sort! ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:1372 _sort!(v::Vector{Tuple{Int64,… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:1450 _issorted ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ring.jl:118 lt 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ple.jl:622 isless . ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1246 wait_forever at ./task.jl:1168 jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4310 jl_apply at /source/src/julia.h:2285 [inlined] start_task at /source/src/task.c:1275 unknown function (ip: (nil)) at (unknown file) .. ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x0000720a21024010 Total snapshots: 403. Utilization: 0% ╎403 @Base/task.jl:1168 wait_forever() 402╎ 403 @Base/task.jl:1246 wait() ... [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1246 wait_forever at ./task.jl:1168 jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4310 jl_apply at /source/src/julia.h:2285 [inlined] start_task at /source/src/task.c:1275 unknown function (ip: (nil)) at (unknown file) Allocations: 17191388 (Pool: 17190741; Big: 647); GC: 16 [28] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/CrystalNets/BL1Km/test/runtests.jl:416 __madvise at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) jl_gc_free_page at /source/src/gc-pages.c:201 gc_free_pages at /source/src/gc-stock.c:1339 gc_sweep_pool at /source/src/gc-stock.c:1474 [inlined] _jl_gc_collect at /source/src/gc-stock.c:3202 ijl_gc_collect at /source/src/gc-stock.c:3510 maybe_collect at /source/src/gc-stock.c:356 [inlined] jl_gc_small_alloc_inner at /source/src/gc-stock.c:733 jl_gc_small_alloc_noinline at /source/src/gc-stock.c:791 [inlined] jl_gc_alloc_ at /source/src/gc-stock.c:805 jl_alloc_genericmemory_unchecked at /source/src/genericmemory.c:41 GenericMemory at ./boot.jl:615 [inlined] array_new_memory at ./array.jl:1101 [inlined] _growend_internal! at ./array.jl:1181 _growend! at ./array.jl:1205 [inlined] _push! at ./array.jl:1348 [inlined] push! at ./array.jl:1345 [inlined] _neighborhood at /home/pkgeval/.julia/packages/PeriodicGraphs/jkIeq/src/algorithms/neighborhood.jl:107 coordination_sequence at /home/pkgeval/.julia/packages/PeriodicGraphs/jkIeq/src/algorithms/neighborhood.jl:148 #get_CollisionNode##0 at ./none (unknown line) [inlined] iterate at ./generator.jl:48 [inlined] collect_to! at ./array.jl:886 [inlined] collect_to_with_first! at ./array.jl:864 [inlined] collect at ./array.jl:838 get_CollisionNode at /home/pkgeval/.julia/packages/CrystalNets/BL1Km/src/stability.jl:28 get_CollisionList at /home/pkgeval/.julia/packages/CrystalNets/BL1Km/src/stability.jl:87 unknown function (ip: 0x7eeed15f079a) at (unknown file) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_invoke at /source/src/gf.c:4120 unknown function (ip: 0x7eeee8b9b27c) at (unknown file) unknown function (ip: 0x7eeee8b9b32c) at (unknown file) collision_nodes at /home/pkgeval/.julia/packages/CrystalNets/BL1Km/src/stability.jl:232 topological_genome at /home/pkgeval/.julia/packages/CrystalNets/BL1Km/src/query.jl:22 unknown function (ip: 0x7eeee8b6e023) at (unknown file) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4310 topological_genome at /home/pkgeval/.julia/packages/CrystalNets/BL1Km/src/query.jl:153 topological_genome at /home/pkgeval/.julia/packages/CrystalNets/BL1Km/src/query.jl:87 [inlined] #topological_genome#222 at /home/pkgeval/.julia/packages/CrystalNets/BL1Km/src/query.jl:90 [inlined] topological_genome at /home/pkgeval/.julia/packages/CrystalNets/BL1Km/src/query.jl:90 unknown function (ip: 0x7eeec504e11c) at (unknown file) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4310 jl_apply at /source/src/julia.h:2285 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 eval_body at /source/src/interpreter.c:550 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 ijl_eval_thunk at /source/src/toplevel.c:765 jl_toplevel_eval_flex at /source/src/toplevel.c:712 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_toplevel_eval_flex at /source/src/toplevel.c:684 ijl_toplevel_eval at /source/src/toplevel.c:779 ijl_toplevel_eval_in at /source/src/toplevel.c:824 eval at ./boot.jl:489 include_string at ./loading.jl:3151 _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4310 _include at ./loading.jl:3211 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 jfptr_IncludeInto_1.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4310 jl_apply at /source/src/julia.h:2285 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 ijl_eval_thunk at /source/src/toplevel.c:765 jl_toplevel_eval_flex at /source/src/toplevel.c:712 jl_eval_toplevel_stmts at /source/src/toplevel.c:602 jl_toplevel_eval_flex at /source/src/toplevel.c:684 ijl_toplevel_eval at /source/src/toplevel.c:779 ijl_toplevel_eval_in at /source/src/toplevel.c:824 eval at ./boot.jl:489 exec_options at ./client.jl:310 _start at ./client.jl:585 jfptr__start_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113 [inlined] ijl_apply_generic at /source/src/gf.c:4310 jl_apply at /source/src/julia.h:2285 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7eef29521249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) Allocations: 3045605698 (Pool: 3045601063; Big: 4635); GC: 2378 PkgEval terminated after 2725.77s: test duration exceeded the time limit