Package evaluation to load AlgebraicPetri on Julia 1.14.0-DEV.1688 (ee54f91d68*) started at 2026-02-10T06:49:45.759


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# Set-up
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Set-up completed after 0.13s


################################################################################
# Installation
#

Installing AlgebraicPetri...
   Resolving package versions...
┌ Warning: tarball content of url https://api.github.com/repos/AlgebraicJulia/ACSets.jl/tarball/80ca69d6844aa5a1e67338b5362e393007c4c168 does not match git-tree-sha1, expected 80ca69d6844aa5a1e67338b5362e393007c4c168, got UInt8[0xd1, 0x1b, 0xa5, 0x13, 0x1c, 0x10, 0xde, 0x7a, 0x07, 0x55, 0x00, 0x30, 0xe6, 0x80, 0xaf, 0xa0, 0x1e, 0x32, 0xbf, 0xfb]
└ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:1176
     Cloning [227ef7b5-1206-438b-ac65-934d6da304b8] ACSets from https://github.com/AlgebraicJulia/ACSets.jl.git
    Updating git-repo `https://github.com/AlgebraicJulia/ACSets.jl.git`
   Installed ACSets ─ v0.2.26
    Updating `~/.julia/environments/v1.14/Project.toml`
  [4f99eebe] + AlgebraicPetri v0.10.0
    Updating `~/.julia/environments/v1.14/Manifest.toml`
⌃ [227ef7b5] + ACSets v0.2.26
  [7d9f7c33] + Accessors v0.1.43
  [79e6a3ab] + Adapt v4.4.0
  [23cfdc9f] + AlgebraicInterfaces v0.1.4
  [4f99eebe] + AlgebraicPetri v0.10.0
  [4fba245c] + ArrayInterface v7.22.0
  [134e5e36] + Catlab v0.17.4
  [d360d2e6] + ChainRulesCore v1.26.0
  [3da002f7] + ColorTypes v0.12.1
  [5ae59095] + Colors v0.13.1
  [861a8166] + Combinatorics v1.1.0
  [bbf7d656] + CommonSubexpressions v0.3.1
  [0fb5dd42] + CompTime v0.1.2
  [34da2185] + Compat v4.18.1
  [a81c6b42] + Compose v0.9.6
  [a33af91c] + CompositionsBase v0.1.2
  [187b0558] + ConstructionBase v1.6.0
  [a8cc5b0e] + Crayons v4.1.1
  [9a962f9c] + DataAPI v1.16.0
⌅ [864edb3b] + DataStructures v0.18.22
  [e2d170a0] + DataValueInterfaces v1.0.0
  [163ba53b] + DiffResults v1.1.0
  [b552c78f] + DiffRules v1.15.1
  [ffbed154] + DocStringExtensions v0.9.5
  [e2ba6199] + ExprTools v0.1.10
  [53c48c17] + FixedPointNumbers v0.8.5
  [f6369f11] + ForwardDiff v1.3.2
  [f0ffcf3b] + GATlab v0.2.2
  [46192b85] + GPUArraysCore v0.2.0
  [6b9d7cbe] + GeneralizedGenerated v0.3.3
  [3587e190] + InverseFunctions v0.1.17
  [92d709cd] + IrrationalConstants v0.2.6
  [c8e1da08] + IterTools v1.10.0
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [692b3bcd] + JLLWrappers v1.7.1
⌅ [682c06a0] + JSON v0.21.4
  [0f8b85d8] + JSON3 v1.14.3
  [b14d175d] + JuliaVariables v0.2.4
  [b964fa9f] + LaTeXStrings v1.4.0
  [2ee39098] + LabelledArrays v1.18.0
  [9c8b4983] + LightXML v0.9.3
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [d8e11817] + MLStyle v0.4.17
  [1914dd2f] + MacroTools v0.5.16
  [442fdcdd] + Measures v0.3.3
  [77ba4419] + NaNMath v1.1.3
  [71a1bf82] + NameResolution v0.1.5
  [bac558e1] + OrderedCollections v1.8.1
  [12d937ae] + PEG v1.0.4
  [69de0a69] + Parsers v2.8.3
  [2ae35dd2] + Permutations v0.4.23
  [d236fae5] + PreallocationTools v1.1.2
  [aea7be01] + PrecompileTools v1.3.3
  [21216c6a] + Preferences v1.5.1
  [8162dcfd] + PrettyPrint v0.2.0
⌅ [08abe8d2] + PrettyTables v2.4.0
  [3cdcf5f2] + RecipesBase v1.3.4
  [731186ca] + RecursiveArrayTools v3.47.0
  [189a3867] + Reexport v1.2.2
  [ae029012] + Requires v1.3.1
  [7e49a35a] + RuntimeGeneratedFunctions v0.5.17
  [276daf66] + SpecialFunctions v2.6.1
  [90137ffa] + StaticArrays v1.9.16
  [1e83bf80] + StaticArraysCore v1.4.4
  [10745b16] + Statistics v1.11.1
  [892a3eda] + StringManipulation v0.4.2
  [6ec83bb0] + StructEquality v2.1.0
  [856f2bd8] + StructTypes v1.11.0
⌃ [2efcf032] + SymbolicIndexingInterface v0.3.44
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.1
  [94ce4f54] + Libiconv_jll v1.18.0+0
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [02c8fc9c] + XML2_jll v2.15.1+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [f43a241f] + Downloads v1.7.0
  [7b1f6079] + FileWatching v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0
  [b27032c2] + LibCURL v1.0.0
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.13.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [44cfe95a] + Pkg v1.14.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.0.0
  [9e88b42a] + Serialization v1.11.0
  [2f01184e] + SparseArrays v1.13.0
  [f489334b] + StyledStrings v1.13.0
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] + LibCURL_jll v8.18.0+0
  [e37daf67] + LibGit2_jll v1.9.2+0
  [29816b5a] + LibSSH2_jll v1.11.3+1
  [14a3606d] + MozillaCACerts_jll v2025.12.2
  [4536629a] + OpenBLAS_jll v0.3.30+0
  [05823500] + OpenLibm_jll v0.8.7+0
  [458c3c95] + OpenSSL_jll v3.5.4+0
  [efcefdf7] + PCRE2_jll v10.47.0+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [83775a58] + Zlib_jll v1.3.1+2
  [3161d3a3] + Zstd_jll v1.5.7+1
  [8e850b90] + libblastrampoline_jll v5.15.0+0
  [8e850ede] + nghttp2_jll v1.68.0+1
  [3f19e933] + p7zip_jll v17.7.0+0
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`

Installation completed after 8.62s


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# Precompilation
#

Precompiling PkgEval dependencies...
     Project No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml`
    Manifest No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml`

Precompiling package dependencies...
Precompiling packages...
  36785.7 ms  ✓ ACSets
   7235.6 ms  ✓ Compose
   6697.3 ms  ✓ LabelledArrays
 236335.3 ms  ✓ Catlab
ERROR: LoadError: UndefVarError: `collect` not defined in `AlgebraicPetri`
Hint: It looks like two or more modules export different bindings with this name, resulting in ambiguity. Try explicitly importing it from a particular module, or qualifying the name with the module it should come from.
Hint: a global variable of this name also exists in Base.
Stacktrace:
  [1] AlgebraicPetri.LabelledPetriNet(n::Vector{Symbol}, ts::Pair{Symbol, Pair{Tuple{Symbol, Symbol}, Tuple{Symbol, Symbol}}})
    @ AlgebraicPetri ~/.julia/packages/AlgebraicPetri/Oxc0f/src/AlgebraicPetri.jl:494
  [2] exposure_petri(x::Symbol, y::Symbol, z::Symbol, transition::Symbol)
    @ AlgebraicPetri.Epidemiology ~/.julia/packages/AlgebraicPetri/Oxc0f/src/Epidemiology.jl:23
  [3] top-level scope
    @ ~/.julia/packages/AlgebraicPetri/Oxc0f/src/Epidemiology.jl:26
  [4] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:310
  [5] top-level scope
    @ ~/.julia/packages/AlgebraicPetri/Oxc0f/src/AlgebraicPetri.jl:770
  [6] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
  [7] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3309
  [8] top-level scope
    @ stdin:5
  [9] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [10] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:3151
 [11] include_string
    @ ./loading.jl:3161 [inlined]
 [12] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [13] _start()
    @ Base ./client.jl:585
in expression starting at /home/pkgeval/.julia/packages/AlgebraicPetri/Oxc0f/src/Epidemiology.jl:1
in expression starting at /home/pkgeval/.julia/packages/AlgebraicPetri/Oxc0f/src/AlgebraicPetri.jl:1
in expression starting at stdin:5
              ✗ AlgebraicPetri
  4 dependencies successfully precompiled in 322 seconds. 130 already precompiled.

Precompilation completed after 330.4s


################################################################################
# Loading
#

Loading AlgebraicPetri...
ERROR: LoadError: UndefVarError: `collect` not defined in `AlgebraicPetri`
Hint: It looks like two or more modules export different bindings with this name, resulting in ambiguity. Try explicitly importing it from a particular module, or qualifying the name with the module it should come from.
Hint: a global variable of this name also exists in Base.
Stacktrace:
  [1] AlgebraicPetri.LabelledPetriNet(n::Vector{Symbol}, ts::Pair{Symbol, Pair{Tuple{Symbol, Symbol}, Tuple{Symbol, Symbol}}})
    @ AlgebraicPetri ~/.julia/packages/AlgebraicPetri/Oxc0f/src/AlgebraicPetri.jl:494
  [2] exposure_petri(x::Symbol, y::Symbol, z::Symbol, transition::Symbol)
    @ AlgebraicPetri.Epidemiology ~/.julia/packages/AlgebraicPetri/Oxc0f/src/Epidemiology.jl:23
  [3] top-level scope
    @ ~/.julia/packages/AlgebraicPetri/Oxc0f/src/Epidemiology.jl:26
  [4] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:310
  [5] top-level scope
    @ ~/.julia/packages/AlgebraicPetri/Oxc0f/src/AlgebraicPetri.jl:770
  [6] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
  [7] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3309
  [8] top-level scope
    @ stdin:5
  [9] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [10] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:3151
 [11] include_string
    @ ./loading.jl:3161 [inlined]
 [12] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [13] _start()
    @ Base ./client.jl:585
in expression starting at /home/pkgeval/.julia/packages/AlgebraicPetri/Oxc0f/src/Epidemiology.jl:1
in expression starting at /home/pkgeval/.julia/packages/AlgebraicPetri/Oxc0f/src/AlgebraicPetri.jl:1
in expression starting at stdin:5

  1 dependency had output during precompilation:
┌ AlgebraicPetri
│  [Output was shown above]
└  
ERROR: The following 1 package failed to precompile:

AlgebraicPetri 
Failed to precompile AlgebraicPetri [4f99eebe-17bf-4e98-b6a1-2c4f205a959b] to "/home/pkgeval/.julia/compiled/v1.14/AlgebraicPetri/jl_51WlaM" (ProcessExited(1)).


Loading failed after 41.42s

ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so -g1 --check-bounds=yes --inline=yes --check-bounds=yes --pkgimages=existing -e 'using AlgebraicPetri'`, ProcessExited(1)) [1]

Stacktrace:
 [1] pipeline_error
   @ ./process.jl:610 [inlined]
 [2] run(::Cmd; wait::Bool)
   @ Base ./process.jl:525
 [3] run(::Cmd)
   @ Base ./process.jl:522
 [4] top-level scope
   @ /PkgEval.jl/scripts/evaluate.jl:197
 [5] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [6] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [7] _start()
   @ Base ./client.jl:585
in expression starting at /PkgEval.jl/scripts/evaluate.jl:188

PkgEval failed after 401.3s: package fails to precompile