Package evaluation of LinearMixingModels on Julia 1.12.0-DEV.2007 (ebef610801*) started at 2025-02-14T05:08:20.492 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.05s ################################################################################ # Installation # Installing LinearMixingModels... Resolving package versions... Installed IrrationalConstants ───── v0.2.4 Installed Rmath ─────────────────── v0.8.0 Installed PtrArrays ─────────────── v1.3.0 Installed TensorCore ────────────── v0.1.1 Installed StatsFuns ─────────────── v1.3.2 Installed Functors ──────────────── v0.4.12 Installed HypergeometricFunctions ─ v0.3.27 Installed Preferences ───────────── v1.4.3 Installed PDMats ────────────────── v0.11.32 Installed DataAPI ───────────────── v1.16.0 Installed RecipesBase ───────────── v1.3.4 Installed Richardson ────────────── v1.4.2 Installed JLLWrappers ───────────── v1.7.0 Installed SpecialFunctions ──────── v2.5.0 Installed FiniteDifferences ─────── v0.12.32 Installed StaticArrays ──────────── v1.9.12 Installed StaticArraysCore ──────── v1.4.3 Installed BlockDiagonals ────────── v0.1.42 Installed OrderedCollections ────── v1.8.0 Installed PrecompileTools ───────── v1.2.1 Installed Reexport ──────────────── v1.2.2 Installed ChainRulesCore ────────── v1.25.1 Installed FillArrays ────────────── v0.13.11 Installed Rmath_jll ─────────────── v0.5.1+0 Installed QuadGK ────────────────── v2.11.2 Installed AbstractGPs ───────────── v0.5.21 Installed Statistics ────────────── v1.11.1 Installed LogExpFunctions ───────── v0.3.29 Installed Requires ──────────────── v1.3.0 Installed AliasTables ───────────── v1.1.3 Installed KernelFunctions ───────── v0.10.64 Installed DataStructures ────────── v0.18.20 Installed ZygoteRules ───────────── v0.2.7 Installed MacroTools ────────────── v0.5.15 Installed StatsAPI ──────────────── v1.7.0 Installed OpenSpecFun_jll ───────── v0.5.6+0 Installed Compat ────────────────── v4.16.0 Installed CompositionsBase ──────── v0.1.2 Installed Distributions ─────────── v0.25.117 Installed LinearMixingModels ────── v0.1.11 Installed Distances ─────────────── v0.10.12 Installed Missings ──────────────── v1.2.0 Installed DocStringExtensions ───── v0.9.3 Installed SortingAlgorithms ─────── v1.2.1 Installed StatsBase ─────────────── v0.34.4 Installing 2 artifacts Installed artifact Rmath 121.9 KiB Installed artifact OpenSpecFun 194.9 KiB Updating `~/.julia/environments/v1.12/Project.toml` [b8ce4b42] + LinearMixingModels v0.1.11 Updating `~/.julia/environments/v1.12/Manifest.toml` [99985d1d] + AbstractGPs v0.5.21 [66dad0bd] + AliasTables v1.1.3 [0a1fb500] + BlockDiagonals v0.1.42 [d360d2e6] + ChainRulesCore v1.25.1 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.20 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.117 [ffbed154] + DocStringExtensions v0.9.3 ⌅ [1a297f60] + FillArrays v0.13.11 [26cc04aa] + FiniteDifferences v0.12.32 ⌅ [d9f16b24] + Functors v0.4.12 [34004b35] + HypergeometricFunctions v0.3.27 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.0 [ec8451be] + KernelFunctions v0.10.64 [b8ce4b42] + LinearMixingModels v0.1.11 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.15 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.32 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.0 [708f8203] + Richardson v1.4.2 [79098fc4] + Rmath v0.8.0 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.0 [90137ffa] + StaticArrays v1.9.12 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [4c63d2b9] + StatsFuns v1.3.2 [62fd8b95] + TensorCore v0.1.1 [700de1a5] + ZygoteRules v0.2.7 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.3.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 8.83s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 7504.5 ms ✓ TestEnv 1 dependency successfully precompiled in 10 seconds. 25 already precompiled. Precompiling package dependencies... ERROR: LoadError: The following 2 direct dependencies failed to precompile: ZygoteDistancesExt Failed to precompile ZygoteDistancesExt [5865c103-18d1-586a-9b11-010bbc2260a8] to "/home/pkgeval/.julia/compiled/v1.12/ZygoteDistancesExt/jl_Qrh76K". WARNING: Detected access to binding `Forward._pushforward` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. WARNING: Constructor for type "Variable" was extended in `Zygote` without explicit qualification or import. NOTE: Assumed "Variable" refers to `IRTools.Variable`. This behavior is deprecated and may differ in future versions.` NOTE: This behavior may have differed in Julia versions prior to 1.12. Hint: If you intended to create a new generic function of the same name, use `function Variable end`. Hint: To silence the warning, qualify `Variable` as `IRTools.Variable` or explicitly `import IRTools: Variable` WARNING: Constructor for type "Variable" was extended in `Zygote` without explicit qualification or import. NOTE: Assumed "Variable" refers to `IRTools.Variable`. This behavior is deprecated and may differ in future versions.` NOTE: This behavior may have differed in Julia versions prior to 1.12. Hint: If you intended to create a new generic function of the same name, use `function Variable end`. Hint: To silence the warning, qualify `Variable` as `IRTools.Variable` or explicitly `import IRTools: Variable` ERROR: LoadError: UndefVarError: `chain_rrule` not defined in `Base` Stacktrace: [1] macro expansion @ ~/.julia/packages/Zygote/3To5I/src/compiler/interface2.jl:-1 [inlined] [2] _pullback(::Zygote.Context{false}, ::typeof(>), ::Int64, ::Int64) @ Zygote ~/.julia/packages/Zygote/3To5I/src/compiler/interface2.jl:91 [3] _pullback(::Zygote.Context{false}, ::typeof(Zygote.pow), ::Int64, ::Int64) @ Zygote ~/.julia/packages/Zygote/3To5I/src/compiler/interface2.jl:91 [4] pullback(::Function, ::Zygote.Context{false}, ::Int64, ::Vararg{Int64}) @ Zygote ~/.julia/packages/Zygote/3To5I/src/compiler/interface.jl:96 [5] pullback(::Function, ::Int64, ::Int64) @ Zygote ~/.julia/packages/Zygote/3To5I/src/compiler/interface.jl:94 [6] gradient(::Function, ::Int64, ::Vararg{Int64}) @ Zygote ~/.julia/packages/Zygote/3To5I/src/compiler/interface.jl:153 [7] top-level scope @ ~/.julia/packages/Zygote/3To5I/src/precompile.jl:17 [8] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:308 [9] IncludeInto @ ./Base.jl:309 [inlined] [10] macro expansion @ ~/.julia/packages/Requires/Z8rfN/src/Requires.jl:40 [inlined] [11] precompile() @ Zygote ~/.julia/packages/Zygote/3To5I/src/Zygote.jl:64 [12] macro expansion @ ~/.julia/packages/PrecompileTools/L8A3n/src/workloads.jl:78 [inlined] [13] top-level scope @ ~/.julia/packages/Zygote/3To5I/src/Zygote.jl:85 [14] include(mod::Module, _path::String) @ Base ./Base.jl:307 [15] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3004 [16] top-level scope @ stdin:6 [17] eval(m::Module, e::Any) @ Core ./boot.jl:486 [18] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2855 [19] include_string @ ./loading.jl:2865 [inlined] [20] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [21] _start() @ Base ./client.jl:556 in expression starting at /home/pkgeval/.julia/packages/Zygote/3To5I/src/precompile.jl:17 in expression starting at /home/pkgeval/.julia/packages/Zygote/3To5I/src/Zygote.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile Zygote [e88e6eb3-aa80-5325-afca-941959d7151f] to "/home/pkgeval/.julia/compiled/v1.12/Zygote/jl_DpEpSD". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3291 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2682 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1280 [8] #invokelatest_gr#227 @ ./reflection.jl:1288 [inlined] [9] invokelatest_gr @ ./reflection.jl:1282 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3862 [11] maybe_cachefile_lock @ ./loading.jl:3859 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2668 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2493 [14] macro expansion @ ./loading.jl:2421 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2386 [17] #invoke_in_world#2 @ ./essentials.jl:1092 [inlined] [18] invoke_in_world @ ./essentials.jl:1088 [inlined] [19] require(into::Module, mod::Symbol) @ Base ./loading.jl:2366 [20] top-level scope @ ~/.julia/packages/Zygote/3To5I/ext/ZygoteDistancesExt.jl:4 [21] include(mod::Module, _path::String) @ Base ./Base.jl:307 [22] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3004 [23] top-level scope @ stdin:6 [24] eval(m::Module, e::Any) @ Core ./boot.jl:486 [25] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2855 [26] include_string @ ./loading.jl:2865 [inlined] [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [28] _start() @ Base ./client.jl:556 in expression starting at /home/pkgeval/.julia/packages/Zygote/3To5I/ext/ZygoteDistancesExt.jl:1 in expression starting at stdin:6 Zygote Failed to precompile Zygote [e88e6eb3-aa80-5325-afca-941959d7151f] to "/home/pkgeval/.julia/compiled/v1.12/Zygote/jl_pGmUtI". WARNING: Detected access to binding `Forward._pushforward` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. WARNING: Constructor for type "Variable" was extended in `Zygote` without explicit qualification or import. NOTE: Assumed "Variable" refers to `IRTools.Variable`. This behavior is deprecated and may differ in future versions.` NOTE: This behavior may have differed in Julia versions prior to 1.12. Hint: If you intended to create a new generic function of the same name, use `function Variable end`. Hint: To silence the warning, qualify `Variable` as `IRTools.Variable` or explicitly `import IRTools: Variable` WARNING: Constructor for type "Variable" was extended in `Zygote` without explicit qualification or import. NOTE: Assumed "Variable" refers to `IRTools.Variable`. This behavior is deprecated and may differ in future versions.` NOTE: This behavior may have differed in Julia versions prior to 1.12. Hint: If you intended to create a new generic function of the same name, use `function Variable end`. Hint: To silence the warning, qualify `Variable` as `IRTools.Variable` or explicitly `import IRTools: Variable` ERROR: LoadError: UndefVarError: `chain_rrule` not defined in `Base` Stacktrace: [1] macro expansion @ ~/.julia/packages/Zygote/3To5I/src/compiler/interface2.jl:-1 [inlined] [2] _pullback(::Zygote.Context{false}, ::typeof(>), ::Int64, ::Int64) @ Zygote ~/.julia/packages/Zygote/3To5I/src/compiler/interface2.jl:91 [3] _pullback(::Zygote.Context{false}, ::typeof(Zygote.pow), ::Int64, ::Int64) @ Zygote ~/.julia/packages/Zygote/3To5I/src/compiler/interface2.jl:91 [4] pullback(::Function, ::Zygote.Context{false}, ::Int64, ::Vararg{Int64}) @ Zygote ~/.julia/packages/Zygote/3To5I/src/compiler/interface.jl:96 [5] pullback(::Function, ::Int64, ::Int64) @ Zygote ~/.julia/packages/Zygote/3To5I/src/compiler/interface.jl:94 [6] gradient(::Function, ::Int64, ::Vararg{Int64}) @ Zygote ~/.julia/packages/Zygote/3To5I/src/compiler/interface.jl:153 [7] top-level scope @ ~/.julia/packages/Zygote/3To5I/src/precompile.jl:17 [8] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:308 [9] IncludeInto @ ./Base.jl:309 [inlined] [10] macro expansion @ ~/.julia/packages/Requires/Z8rfN/src/Requires.jl:40 [inlined] [11] precompile() @ Zygote ~/.julia/packages/Zygote/3To5I/src/Zygote.jl:64 [12] macro expansion @ ~/.julia/packages/PrecompileTools/L8A3n/src/workloads.jl:78 [inlined] [13] top-level scope @ ~/.julia/packages/Zygote/3To5I/src/Zygote.jl:85 [14] include(mod::Module, _path::String) @ Base ./Base.jl:307 [15] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3004 [16] top-level scope @ stdin:6 [17] eval(m::Module, e::Any) @ Core ./boot.jl:486 [18] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2855 [19] include_string @ ./loading.jl:2865 [inlined] [20] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [21] _start() @ Base ./client.jl:556 in expression starting at /home/pkgeval/.julia/packages/Zygote/3To5I/src/precompile.jl:17 in expression starting at /home/pkgeval/.julia/packages/Zygote/3To5I/src/Zygote.jl:1 in expression starting at stdin:6 in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 672.07s ################################################################################ # Testing # Testing LinearMixingModels Status `/tmp/jl_XWLNGz/Project.toml` [99985d1d] AbstractGPs v0.5.21 [31c24e10] Distributions v0.25.117 [e30172f5] Documenter v1.8.1 ⌅ [1a297f60] FillArrays v0.13.11 [ec8451be] KernelFunctions v0.10.64 [b8ce4b42] LinearMixingModels v0.1.11 [e88e6eb3] Zygote v0.7.4 [37e2e46d] LinearAlgebra v1.12.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_XWLNGz/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [99985d1d] AbstractGPs v0.5.21 [1520ce14] AbstractTrees v0.4.5 [79e6a3ab] Adapt v4.1.1 [66dad0bd] AliasTables v1.1.3 [a9b6321e] Atomix v1.1.0 [0a1fb500] BlockDiagonals v0.1.42 [fa961155] CEnum v0.5.0 [082447d4] ChainRules v1.72.2 [d360d2e6] ChainRulesCore v1.25.1 [944b1d66] CodecZlib v0.7.8 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.16.0 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.5.8 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.20 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.117 [ffbed154] DocStringExtensions v0.9.3 [e30172f5] Documenter v1.8.1 ⌅ [1a297f60] FillArrays v0.13.11 [26cc04aa] FiniteDifferences v0.12.32 [f6369f11] ForwardDiff v0.10.38 ⌅ [d9f16b24] Functors v0.4.12 [0c68f7d7] GPUArrays v11.2.2 [46192b85] GPUArraysCore v0.2.0 [d7ba0133] Git v1.3.1 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.27 [b5f81e59] IOCapture v0.2.5 [7869d1d1] IRTools v0.4.14 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [63c18a36] KernelAbstractions v0.9.33 [ec8451be] KernelFunctions v0.10.64 [929cbde3] LLVM v9.2.0 [0e77f7df] LazilyInitializedFields v1.3.0 [b8ce4b42] LinearMixingModels v0.1.11 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.15 [d0879d2d] MarkdownAST v0.1.2 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.2 [bac558e1] OrderedCollections v1.8.0 [90014a1f] PDMats v0.11.32 [69de0a69] Parsers v2.8.1 [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [2792f1a3] RegistryInstances v0.1.0 [ae029012] Requires v1.3.0 [708f8203] Richardson v1.4.2 [79098fc4] Rmath v0.8.0 [7e506255] ScopedValues v1.3.0 [a2af1166] SortingAlgorithms v1.2.1 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.5.0 [90137ffa] StaticArrays v1.9.12 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [4c63d2b9] StatsFuns v1.3.2 [09ab397b] StructArrays v0.7.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [62fd8b95] TensorCore v0.1.1 [3bb67fe8] TranscodingStreams v0.11.3 [013be700] UnsafeAtomics v0.3.0 [e88e6eb3] Zygote v0.7.4 [700de1a5] ZygoteRules v0.2.7 [2e619515] Expat_jll v2.6.5+0 [f8c6e375] Git_jll v2.47.1+0 [dad2f222] LLVMExtra_jll v0.0.35+0 [94ce4f54] Libiconv_jll v1.18.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.11.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2024.12.31 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.0.16+0 [efcefdf7] PCRE2_jll v10.44.0+1 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.12.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... Info Given Zygote was explicitly requested, output will be shown live  WARNING: Detected access to binding `Forward._pushforward` in a world prior to its definition world.  Julia 1.12 has introduced more strict world age semantics for global bindings.  !!! This code may malfunction under Revise.  !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. WARNING: Constructor for type "Variable" was extended in `Zygote` without explicit qualification or import.  NOTE: Assumed "Variable" refers to `IRTools.Variable`. This behavior is deprecated and may differ in future versions.`  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function Variable end`.  Hint: To silence the warning, qualify `Variable` as `IRTools.Variable` or explicitly `import IRTools: Variable` WARNING: Constructor for type "Variable" was extended in `Zygote` without explicit qualification or import.  NOTE: Assumed "Variable" refers to `IRTools.Variable`. This behavior is deprecated and may differ in future versions.`  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function Variable end`.  Hint: To silence the warning, qualify `Variable` as `IRTools.Variable` or explicitly `import IRTools: Variable` ERROR: LoadError: UndefVarError: `chain_rrule` not defined in `Base` Stacktrace:  [1] macro expansion  @ ~/.julia/packages/Zygote/3To5I/src/compiler/interface2.jl:-1 [inlined]  [2] _pullback(::Zygote.Context{false}, ::typeof(>), ::Int64, ::Int64)  @ Zygote ~/.julia/packages/Zygote/3To5I/src/compiler/interface2.jl:91  [3] _pullback(::Zygote.Context{false}, ::typeof(Zygote.pow), ::Int64, ::Int64)  @ Zygote ~/.julia/packages/Zygote/3To5I/src/compiler/interface2.jl:91  [4] pullback(::Function, ::Zygote.Context{false}, ::Int64, ::Vararg{Int64})  @ Zygote ~/.julia/packages/Zygote/3To5I/src/compiler/interface.jl:96  [5] pullback(::Function, ::Int64, ::Int64)  @ Zygote ~/.julia/packages/Zygote/3To5I/src/compiler/interface.jl:94  [6] gradient(::Function, ::Int64, ::Vararg{Int64})  @ Zygote ~/.julia/packages/Zygote/3To5I/src/compiler/interface.jl:153  [7] top-level scope  @ ~/.julia/packages/Zygote/3To5I/src/precompile.jl:17  [8] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:308  [9] IncludeInto  @ ./Base.jl:309 [inlined]  [10] macro expansion  @ ~/.julia/packages/Requires/Z8rfN/src/Requires.jl:40 [inlined]  [11] precompile()  @ Zygote ~/.julia/packages/Zygote/3To5I/src/Zygote.jl:64  [12] macro expansion  @ ~/.julia/packages/PrecompileTools/L8A3n/src/workloads.jl:78 [inlined]  [13] top-level scope  @ ~/.julia/packages/Zygote/3To5I/src/Zygote.jl:85  [14] include(mod::Module, _path::String)  @ Base ./Base.jl:307  [15] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3004  [16] top-level scope  @ stdin:6  [17] eval(m::Module, e::Any)  @ Core ./boot.jl:486  [18] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2855  [19] include_string  @ ./loading.jl:2865 [inlined]  [20] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:326  [21] _start()  @ Base ./client.jl:556 in expression starting at /home/pkgeval/.julia/packages/Zygote/3To5I/src/precompile.jl:17 in expression starting at /home/pkgeval/.julia/packages/Zygote/3To5I/src/Zygote.jl:1 in expression starting at stdin:6 ✗ Zygote 0 dependencies successfully precompiled in 84 seconds. 101 already precompiled. ERROR: LoadError: The following 1 direct dependency failed to precompile: Zygote Failed to precompile Zygote [e88e6eb3-aa80-5325-afca-941959d7151f] to "/home/pkgeval/.julia/compiled/v1.12/Zygote/jl_tLF83h". WARNING: Detected access to binding `Forward._pushforward` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. WARNING: Constructor for type "Variable" was extended in `Zygote` without explicit qualification or import. NOTE: Assumed "Variable" refers to `IRTools.Variable`. This behavior is deprecated and may differ in future versions.` NOTE: This behavior may have differed in Julia versions prior to 1.12. Hint: If you intended to create a new generic function of the same name, use `function Variable end`. Hint: To silence the warning, qualify `Variable` as `IRTools.Variable` or explicitly `import IRTools: Variable` WARNING: Constructor for type "Variable" was extended in `Zygote` without explicit qualification or import. NOTE: Assumed "Variable" refers to `IRTools.Variable`. This behavior is deprecated and may differ in future versions.` NOTE: This behavior may have differed in Julia versions prior to 1.12. Hint: If you intended to create a new generic function of the same name, use `function Variable end`. Hint: To silence the warning, qualify `Variable` as `IRTools.Variable` or explicitly `import IRTools: Variable` ERROR: LoadError: UndefVarError: `chain_rrule` not defined in `Base` Stacktrace: [1] macro expansion @ ~/.julia/packages/Zygote/3To5I/src/compiler/interface2.jl:-1 [inlined] [2] _pullback(::Zygote.Context{false}, ::typeof(>), ::Int64, ::Int64) @ Zygote ~/.julia/packages/Zygote/3To5I/src/compiler/interface2.jl:91 [3] _pullback(::Zygote.Context{false}, ::typeof(Zygote.pow), ::Int64, ::Int64) @ Zygote ~/.julia/packages/Zygote/3To5I/src/compiler/interface2.jl:91 [4] pullback(::Function, ::Zygote.Context{false}, ::Int64, ::Vararg{Int64}) @ Zygote ~/.julia/packages/Zygote/3To5I/src/compiler/interface.jl:96 [5] pullback(::Function, ::Int64, ::Int64) @ Zygote ~/.julia/packages/Zygote/3To5I/src/compiler/interface.jl:94 [6] gradient(::Function, ::Int64, ::Vararg{Int64}) @ Zygote ~/.julia/packages/Zygote/3To5I/src/compiler/interface.jl:153 [7] top-level scope @ ~/.julia/packages/Zygote/3To5I/src/precompile.jl:17 [8] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:308 [9] IncludeInto @ ./Base.jl:309 [inlined] [10] macro expansion @ ~/.julia/packages/Requires/Z8rfN/src/Requires.jl:40 [inlined] [11] precompile() @ Zygote ~/.julia/packages/Zygote/3To5I/src/Zygote.jl:64 [12] macro expansion @ ~/.julia/packages/PrecompileTools/L8A3n/src/workloads.jl:78 [inlined] [13] top-level scope @ ~/.julia/packages/Zygote/3To5I/src/Zygote.jl:85 [14] include(mod::Module, _path::String) @ Base ./Base.jl:307 [15] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3004 [16] top-level scope @ stdin:6 [17] eval(m::Module, e::Any) @ Core ./boot.jl:486 [18] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2855 [19] include_string @ ./loading.jl:2865 [inlined] [20] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [21] _start() @ Base ./client.jl:556 in expression starting at /home/pkgeval/.julia/packages/Zygote/3To5I/src/precompile.jl:17 in expression starting at /home/pkgeval/.julia/packages/Zygote/3To5I/src/Zygote.jl:1 in expression starting at stdin: in expression starting at /home/pkgeval/.julia/packages/LinearMixingModels/AOZwG/test/runtests.jl:10 Testing failed after 109.33s ERROR: LoadError: Package LinearMixingModels errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2365 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2220 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:486 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:307 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [12] _start() @ Base ./client.jl:556 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 868.03s: package fails to precompile