Package evaluation of TMLECLI on Julia 1.13.0-DEV.123 (e910e6fb06*) started at 2025-03-02T03:24:53.448 ################################################################################ # Set-up # Set-up completed after 0.25s ################################################################################ # Installation # Installing TMLECLI... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [2573d147] + TMLECLI v0.10.1 Updating `~/.julia/environments/v1.13/Manifest.toml` [da404889] + ARFFFiles v1.5.0 [c29ec348] + AbstractDifferentiation v0.6.2 [621f4979] + AbstractFFTs v1.5.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.2.0 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.4.0 [c7e460c6] + ArgParse v1.2.0 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.18.0 [69666777] + Arrow v2.8.0 [31f734f8] + ArrowTypes v2.3.0 [a9b6321e] + Atomix v1.1.1 [15f4f7f2] + AutoHashEquals v2.2.0 [fbb218c0] + BSON v0.3.9 [198e06fe] + BangBang v0.4.4 [9718e550] + Baselet v0.1.1 [d1d4a3ce] + BitFlags v0.1.9 [c3b6d118] + BitIntegers v0.3.2 [fa961155] + CEnum v0.5.0 [336ed68f] + CSV v0.10.15 [324d7699] + CategoricalArrays v0.10.8 [af321ab8] + CategoricalDistributions v0.1.15 [082447d4] + ChainRules v1.72.3 [d360d2e6] + ChainRulesCore v1.25.1 [5ba52731] + CodecLz4 v0.4.5 [944b1d66] + CodecZlib v0.7.8 [6b39b394] + CodecZstd v0.8.6 [3da002f7] + ColorTypes v0.12.0 [861a8166] + Combinatorics v1.0.2 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [ed09eef8] + ComputationalResources v0.3.2 [f0e56b4a] + ConcurrentUtilities v2.5.0 [5218b696] + Configurations v0.17.6 [187b0558] + ConstructionBase v1.5.8 [6add18c4] + ContextVariablesX v0.1.3 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.20 [e2d170a0] + DataValueInterfaces v1.0.0 [244e2a9f] + DefineSingletons v0.1.2 [8bb1440f] + DelimitedFiles v1.9.1 [85a47980] + Dictionaries v0.4.4 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.117 [ffbed154] + DocStringExtensions v0.9.3 [792122b4] + EarlyStopping v0.3.0 [4e289a0a] + EnumX v1.0.4 ⌅ [f6006082] + EvoTrees v0.16.9 [460bff9d] + 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[08abe8d2] + PrettyTables v2.4.0 [92933f4c] + ProgressMeter v1.10.2 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [c1ae055f] + RealDot v0.1.0 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [05181044] + RelocatableFolders v1.0.1 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [f2b01f46] + Roots v2.2.6 [321657f4] + ScientificTypes v3.1.0 [30f210dd] + ScientificTypesBase v3.0.0 [7e506255] + ScopedValues v1.3.0 [6c6a2e73] + Scratch v1.2.1 [91c51154] + SentinelArrays v1.4.8 [efcf1570] + Setfield v1.1.2 [1277b4bf] + ShiftedArrays v2.0.0 [605ecd9f] + ShowCases v0.1.0 [777ac1f9] + SimpleBufferStream v1.2.0 [699a6c99] + SimpleTraits v0.9.4 [a2af1166] + SortingAlgorithms v1.2.1 [dc90abb0] + SparseInverseSubset v0.1.2 [a0a7dd2c] + SparseMatricesCSR v0.6.8 [276daf66] + SpecialFunctions v2.5.0 [03a91e81] + SplitApplyCombine v1.2.3 [171d559e] + SplittablesBase v0.1.15 [860ef19b] + StableRNGs v1.0.2 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 ⌅ [a19d573c] + StatisticalMeasures v0.1.7 [c062fc1d] + StatisticalMeasuresBase v0.1.2 [64bff920] + StatisticalTraits v3.4.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 ⌅ [2913bbd2] + StatsBase v0.33.21 [4c63d2b9] + StatsFuns v1.3.2 [3eaba693] + StatsModels v0.7.4 [69024149] + StringEncodings v0.3.7 [892a3eda] + StringManipulation v0.4.1 [354b36f9] + StringViews v1.3.4 [09ab397b] + StructArrays v0.7.0 [856f2bd8] + StructTypes v1.11.0 [8afdd2fb] + TMLE v0.17.1 [2573d147] + TMLECLI v0.10.1 [dc5dba14] + TZJData v1.4.0+2025a [ab02a1b2] + TableOperations v1.2.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [b718987f] + TextWrap v1.0.2 [f269a46b] + TimeZones v1.21.2 [3bb67fe8] + TranscodingStreams v0.11.3 [28d57a85] + Transducers v0.4.84 [5c2747f8] + URIs v1.5.1 [3a884ed6] + UnPack v1.0.2 [013be700] + UnsafeAtomics v0.3.0 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [009559a3] + XGBoost v2.5.1 [ddb6d928] + YAML v0.4.13 ⌅ [e88e6eb3] + Zygote v0.6.75 [700de1a5] + ZygoteRules v0.2.7 [4ee394cb] + CUDA_Driver_jll v0.12.0+0 [76a88914] + CUDA_Runtime_jll v0.16.0+0 [5ae413db] + EarCut_jll v2.2.4+0 [dad2f222] + LLVMExtra_jll v0.0.35+0 [1d63c593] + LLVMOpenMP_jll v18.1.7+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [5ced341a] + Lz4_jll v1.10.1+0 [c8ffd9c3] + MbedTLS_jll v2.28.6+2 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [a5c6f535] + XGBoost_jll v2.0.1+0 [3161d3a3] + Zstd_jll v1.5.7+1 [78c6b45d] + glmnet_jll v5.0.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.11.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2024.12.31 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 17.6s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml` No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml` Precompiling package dependencies... Precompiling packages... 32333.7 ms ✓ MLJGLMInterface 21396.9 ms ✓ CategoricalDistributions 45377.2 ms ✓ EvoTrees 48746.2 ms ✓ StatisticalMeasuresBase 14949.1 ms ✓ MLJLinearModels 6181.3 ms ✓ AbstractDifferentiation → AbstractDifferentiationZygoteExt 29800.8 ms ✓ MLJModels 171979.2 ms ✓ StatisticalMeasures 22266.4 ms ✓ MLJBase 14183.0 ms ✓ MLJEnsembles 12536.4 ms ✓ StatisticalMeasures → ScientificTypesExt 13401.8 ms ✓ MLJBase → DefaultMeasuresExt 16571.4 ms ✓ MLJIteration 22679.7 ms ✓ MLJFlow 24890.7 ms ✓ MLJTuning 276755.1 ms ✓ TMLE 47387.8 ms ✓ MLJ 31798.6 ms ✓ TMLE → JSONExt 513903.1 ms ✓ TMLE → YAMLExt 36502.3 ms ? TMLECLI 19 dependencies successfully precompiled in 1426 seconds. 323 already precompiled. 1 dependencies failed but may be precompilable after restarting julia 3 dependencies had output during precompilation: ┌ TMLE → YAMLExt │ WARNING: Constructor for type "Variable" was extended in `Zygote` without explicit qualification or import. │ NOTE: Assumed "Variable" refers to `IRTools.Variable`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Variable end`. │ Hint: To silence the warning, qualify `Variable` as `IRTools.Variable` in the method signature or explicitly `import IRTools: Variable`. └ ┌ TMLE │ WARNING: Constructor for type "Variable" was extended in `Zygote` without explicit qualification or import. │ NOTE: Assumed "Variable" refers to `IRTools.Variable`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Variable end`. │ Hint: To silence the warning, qualify `Variable` as `IRTools.Variable` in the method signature or explicitly `import IRTools: Variable`. └ ┌ TMLECLI │ WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Statistics.cov), SparseArrays.SparseMatrixCSC{Tv, Ti} where Ti<:Integer where Tv) in module SparseArraysExt at /home/pkgeval/.julia/packages/Statistics/gbcbG/ext/SparseArraysExt.jl:14 overwritten in module SparseArraysExt on the same line (check for duplicate calls to `include`). │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ Precompilation completed after 1431.74s ################################################################################ # Loading # Loading TMLECLI... Precompiling packages... 10016.5 ms ✓ CategoricalDistributions 22285.5 ms ✓ EvoTrees 37311.7 ms ? StatisticalMeasures 29300.4 ms ✓ MLJModels 108813.0 ms ✓ MLJBase 16342.7 ms ✓ MLJEnsembles 62752.3 ms ✓ StatisticalMeasures → ScientificTypesExt 13551.5 ms ✓ MLJBase → DefaultMeasuresExt 15958.6 ms ✓ MLJIteration 23254.2 ms ✓ MLJFlow 26054.6 ms ✓ MLJTuning 207229.4 ms ✓ TMLE 77243.1 ms ✓ MLJ 31457.6 ms ✓ TMLE → JSONExt 84186.1 ms ? TMLE → YAMLExt Info Given TMLECLI was explicitly requested, output will be shown live  WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Statistics.cov), SparseArrays.SparseMatrixCSC{Tv, Ti} where Ti<:Integer where Tv) in module SparseArraysExt at /home/pkgeval/.julia/packages/Statistics/gbcbG/ext/SparseArraysExt.jl:14 overwritten in module SparseArraysExt on the same line (check for duplicate calls to `include`). ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 61299.1 ms ? TMLECLI 13 dependencies successfully precompiled in 840 seconds. 327 already precompiled. 3 dependencies failed but may be precompilable after restarting julia 4 dependencies had output during precompilation: ┌ StatisticalMeasures │ WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Statistics.cov), SparseArrays.SparseMatrixCSC{Tv, Ti} where Ti<:Integer where Tv) in module SparseArraysExt at /home/pkgeval/.julia/packages/Statistics/gbcbG/ext/SparseArraysExt.jl:14 overwritten in module SparseArraysExt on the same line (check for duplicate calls to `include`). │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ TMLE → YAMLExt │ WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Statistics.cov), SparseArrays.SparseMatrixCSC{Tv, Ti} where Ti<:Integer where Tv) in module SparseArraysExt at /home/pkgeval/.julia/packages/Statistics/gbcbG/ext/SparseArraysExt.jl:14 overwritten in module SparseArraysExt on the same line (check for duplicate calls to `include`). │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ TMLE │ WARNING: Constructor for type "Variable" was extended in `Zygote` without explicit qualification or import. │ NOTE: Assumed "Variable" refers to `IRTools.Variable`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Variable end`. │ Hint: To silence the warning, qualify `Variable` as `IRTools.Variable` in the method signature or explicitly `import IRTools: Variable`. └ ┌ TMLECLI │ [Output was shown above] └ ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 687 running 1 of 1 signal (10): User defined signal 1 ijl_alloc_vec_any at /source/src/array.c:179 jl_exprn at /source/src/builtins.c:1662 jl_decode_value_expr at /source/src/ircode.c:678 [inlined] jl_decode_value at /source/src/ircode.c:841 ijl_uncompress_ir at /source/src/ircode.c:1160 _uncompressed_ir at ./runtime_internals.jl:1393 [inlined] invalidate_method_for_globalref! at ./invalidation.jl:99 #invalidate_code_for_globalref!##0 at ./invalidation.jl:122 foreach_module_mtable at ./invalidation.jl:35 invalidate_code_for_globalref! at ./invalidation.jl:120 invalidate_code_for_globalref! at ./invalidation.jl:161 jfptr_invalidate_code_for_globalrefNOT._120883.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 jl_apply at /source/src/julia.h:2290 [inlined] jl_invalidate_binding_refs at /source/src/module.c:1254 jl_replace_binding_locked2 at /source/src/module.c:1341 ijl_module_public at /source/src/module.c:1088 jl_toplevel_eval_flex at /source/src/toplevel.c:943 ijl_toplevel_eval at /source/src/toplevel.c:1044 ijl_toplevel_eval_in at /source/src/toplevel.c:1089 eval at ./boot.jl:488 jfptr_eval_64089.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 top-level scope at /home/pkgeval/.julia/packages/StatisticalMeasures/UTtxb/src/StatisticalMeasures.jl:63 _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_invoke at /source/src/gf.c:3482 jl_toplevel_eval_flex at /source/src/toplevel.c:1021 jl_eval_module_expr at /source/src/toplevel.c:210 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:826 jl_toplevel_eval_flex at /source/src/toplevel.c:972 ijl_toplevel_eval at /source/src/toplevel.c:1044 ijl_toplevel_eval_in at /source/src/toplevel.c:1089 eval at ./boot.jl:488 include_string at ./loading.jl:2855 _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 _include at ./loading.jl:2915 include at ./Base.jl:307 include_package_for_output at ./loading.jl:3004 jfptr_include_package_for_output_65872.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 jl_apply at /source/src/julia.h:2290 [inlined] do_call at /source/src/interpreter.c:124 eval_value at /source/src/interpreter.c:242 eval_stmt_value at /source/src/interpreter.c:193 [inlined] eval_body at /source/src/interpreter.c:692 jl_interpret_toplevel_thunk at /source/src/interpreter.c:897 jl_toplevel_eval_flex at /source/src/toplevel.c:1032 jl_toplevel_eval_flex at /source/src/toplevel.c:972 ijl_toplevel_eval at /source/src/toplevel.c:1044 ijl_toplevel_eval_in at /source/src/toplevel.c:1089 eval at ./boot.jl:488 include_string at ./loading.jl:2855 include_string at ./loading.jl:2865 [inlined] exec_options at ./client.jl:326 _start at ./client.jl:560 jfptr__start_63968.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 jl_apply at /source/src/julia.h:2290 [inlined] true_main at /source/src/jlapi.c:964 jl_repl_entrypoint at /source/src/jlapi.c:1124 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7500e8a4e249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 659 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 poptask at ./task.jl:1187 wait at ./task.jl:1199 #wait#400 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] wait at ./process.jl:694 wait at ./process.jl:687 [inlined] success at ./process.jl:556 jfptr_success_55798.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 #compilecache#890 at ./loading.jl:3213 compilecache at ./loading.jl:3169 compilecache at ./loading.jl:3169 unknown function (ip: 0x7dd7636411c3) at (unknown file) _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 #__require_prelocked##0 at ./loading.jl:2682 #mkpidlock#8 at /source/usr/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93 unknown function (ip: 0x7dd76360081d) at (unknown file) _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 mkpidlock at /source/usr/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:90 #mkpidlock#7 at /source/usr/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined] mkpidlock at /source/usr/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 jfptr_mkpidlock_115785.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 jl_apply at /source/src/julia.h:2290 [inlined] do_apply at /source/src/builtins.c:839 #trymkpidlock#13 at /source/usr/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114 _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 jl_apply at /source/src/julia.h:2290 [inlined] do_apply at /source/src/builtins.c:839 trymkpidlock at /source/usr/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:112 _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 jl_apply at /source/src/julia.h:2290 [inlined] do_apply at /source/src/builtins.c:839 apply_gr_kw at ./reflection.jl:1280 _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 jl_apply at /source/src/julia.h:2290 [inlined] jl_f__call_latest at /source/src/builtins.c:883 #invokelatest_gr#229 at ./reflection.jl:1288 [inlined] invokelatest_gr at ./reflection.jl:1282 [inlined] #maybe_cachefile_lock#900 at ./loading.jl:3862 maybe_cachefile_lock at ./loading.jl:3859 [inlined] __require_prelocked at ./loading.jl:2668 _require_prelocked at ./loading.jl:2493 _require_prelocked at ./loading.jl:2487 [inlined] run_extension_callbacks at ./loading.jl:1590 run_extension_callbacks at ./loading.jl:1627 run_package_callbacks at ./loading.jl:1442 _require_prelocked at ./loading.jl:2504 macro expansion at ./loading.jl:2421 [inlined] macro expansion at ./lock.jl:376 [inlined] __require at ./loading.jl:2386 jfptr___require_67948.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 jl_apply at /source/src/julia.h:2290 [inlined] jl_f__call_in_world at /source/src/builtins.c:902 #invoke_in_world#2 at ./essentials.jl:1125 [inlined] invoke_in_world at ./essentials.jl:1121 [inlined] require at ./loading.jl:2366 jfptr_require_68003.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 jl_apply at /source/src/julia.h:2290 [inlined] call_require at /source/src/toplevel.c:510 [inlined] eval_import_path at /source/src/toplevel.c:548 jl_toplevel_eval_flex at /source/src/toplevel.c:842 jl_toplevel_eval_flex at /source/src/toplevel.c:972 jl_eval_module_expr at /source/src/toplevel.c:210 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:826 jl_toplevel_eval_flex at /source/src/toplevel.c:972 jl_toplevel_eval_flex at /source/src/toplevel.c:972 ijl_toplevel_eval at /source/src/toplevel.c:1044 ijl_toplevel_eval_in at /source/src/toplevel.c:1089 eval at ./boot.jl:488 include_string at ./loading.jl:2855 _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 _include at ./loading.jl:2915 include at ./Base.jl:307 include_package_for_output at ./loading.jl:3004 jfptr_include_package_for_output_65872.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 jl_apply at /source/src/julia.h:2290 [inlined] do_call at /source/src/interpreter.c:124 eval_value at /source/src/interpreter.c:242 eval_stmt_value at /source/src/interpreter.c:193 [inlined] eval_body at /source/src/interpreter.c:692 jl_interpret_toplevel_thunk at /source/src/interpreter.c:897 jl_toplevel_eval_flex at /source/src/toplevel.c:1032 jl_toplevel_eval_flex at /source/src/toplevel.c:972 ijl_toplevel_eval at /source/src/toplevel.c:1044 ijl_toplevel_eval_in at /source/src/toplevel.c:1089 eval at ./boot.jl:488 include_string at ./loading.jl:2855 include_string at ./loading.jl:2865 [inlined] exec_options at ./client.jl:326 _start at ./client.jl:560 jfptr__start_63968.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 jl_apply at /source/src/julia.h:2290 [inlined] true_main at /source/src/jlapi.c:964 jl_repl_entrypoint at /source/src/jlapi.c:1124 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7dd78c06f249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Error: Profile printing listener crashed │ exception = │ This interactive function requires a stdlib to be loaded, and package code should instead use it directly from that stdlib. │ Stacktrace: │ [1] error(s::String) │ @ Base ./error.jl:44 │ [2] require_stdlib(package_uuidkey::Base.PkgId, ext::Nothing) │ @ Base ./loading.jl:2790 │ [3] require_stdlib │ @ ./loading.jl:2788 [inlined] │ [4] macro expansion │ @ ./some.jl:158 [inlined] │ [5] profile_printing_listener(cond::Base.AsyncCondition) │ @ Base ./Base.jl:334 │ [6] (::Base.var"#start_profile_listener##0#start_profile_listener##1"{Base.AsyncCondition})() │ @ Base ./Base.jl:353 └ @ Base Base.jl:344 ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 611 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 poptask at ./task.jl:1187 wait at ./task.jl:1199 #wait#400 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:185 #633 at ./asyncevent.jl:359 jfptr_YY.633_73496.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 jl_apply at /source/src/julia.h:2290 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Error: Profile printing listener crashed │ exception = │ This interactive function requires a stdlib to be loaded, and package code should instead use it directly from that stdlib. │ Stacktrace: │ [1] error(s::String) │ @ Base ./error.jl:44 │ [2] require_stdlib(package_uuidkey::Base.PkgId, ext::Nothing) │ @ Base ./loading.jl:2790 │ [3] require_stdlib │ @ ./loading.jl:2788 [inlined] │ [4] macro expansion │ @ ./some.jl:158 [inlined] │ [5] profile_printing_listener(cond::Base.AsyncCondition) │ @ Base ./Base.jl:334 │ [6] (::Base.var"#start_profile_listener##0#start_profile_listener##1"{Base.AsyncCondition})() │ @ Base ./Base.jl:353 └ @ Base Base.jl:344 ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 418 running 0 of 2 signal (10): User defined signal 1 unknown function (ip: 0x70139fbb8f14) at /lib/x86_64-linux-gnu/libc.so.6 pthread_cond_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv_cond_wait at /workspace/srcdir/libuv/src/unix/thread.c:822 ijl_task_get_next at /source/src/scheduler.c:520 poptask at ./task.jl:1187 wait at ./task.jl:1199 #wait#400 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:185 profile_printing_listener at ./Base.jl:333 #start_profile_listener##0 at ./Base.jl:353 jfptr_YY.start_profile_listenerYY.YY.0_59886.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 jl_apply at /source/src/julia.h:2290 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 poptask at ./task.jl:1187 wait at ./task.jl:1199 #wait#400 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:185 #633 at ./asyncevent.jl:359 jfptr_YY.633_73496.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 jl_apply at /source/src/julia.h:2290 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 2 signal (10): User defined signal 1 unknown function (ip: 0x774de31bef14) at /lib/x86_64-linux-gnu/libc.so.6 pthread_cond_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv_cond_wait at /workspace/srcdir/libuv/src/unix/thread.c:822 ijl_task_get_next at /source/src/scheduler.c:520 poptask at ./task.jl:1187 wait at ./task.jl:1199 #wait#400 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:185 profile_printing_listener at ./Base.jl:333 #start_profile_listener##0 at ./Base.jl:353 jfptr_YY.start_profile_listenerYY.YY.0_59886.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 jl_apply at /source/src/julia.h:2290 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 poptask at ./task.jl:1187 wait at ./task.jl:1199 #wait#400 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] wait at ./process.jl:694 wait at ./process.jl:687 [inlined] success at ./process.jl:556 #run#704 at ./process.jl:513 run at ./process.jl:510 unknown function (ip: 0x774dd9a4453b) at (unknown file) _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 jl_apply at /source/src/julia.h:2290 [inlined] do_call at /source/src/interpreter.c:124 eval_value at /source/src/interpreter.c:242 eval_stmt_value at /source/src/interpreter.c:193 [inlined] eval_body at /source/src/interpreter.c:692 eval_body at /source/src/interpreter.c:557 eval_body at /source/src/interpreter.c:557 jl_interpret_toplevel_thunk at /source/src/interpreter.c:897 jl_toplevel_eval_flex at /source/src/toplevel.c:1032 jl_toplevel_eval_flex at /source/src/toplevel.c:972 ijl_toplevel_eval at /source/src/toplevel.c:1044 ijl_toplevel_eval_in at /source/src/toplevel.c:1089 eval at ./boot.jl:488 include_string at ./loading.jl:2855 _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 _include at ./loading.jl:2915 include at ./Base.jl:307 exec_options at ./client.jl:328 _start at ./client.jl:560 jfptr__start_63968.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 jl_apply at /source/src/julia.h:2290 [inlined] true_main at /source/src/jlapi.c:964 jl_repl_entrypoint at /source/src/jlapi.c:1124 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x774de3160249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (interactive) Task 0x0000774dd5400010 Total snapshots: 1. Utilization: 0% ╎1 @Base/client.jl:560 _start() ╎ 1 @Base/client.jl:328 exec_options(opts::Base.JLOptions) ╎ 1 @Base/Base.jl:307 include(mod::Module, _path::String) ╎ 1 @Base/loading.jl:2915 _include(mapexpr::Function, mod::Module, _path::S… ╎ 1 @Base/loading.jl:2855 include_string(mapexpr::typeof(identity), mod::M… ╎ 1 @Base/boot.jl:488 eval(m::Module, e::Any) ╎ ╎ 1 @Base/process.jl:510 run(::Cmd) ╎ ╎ 1 @Base/process.jl:513 run(::Cmd; wait::Bool) ╎ ╎ 1 @Base/process.jl:556 success(x::Base.Process) ╎ ╎ 1 @Base/process.jl:687 wait ╎ ╎ 1 @Base/process.jl:694 wait(x::Base.Process, syncd::Bool) ╎ ╎ ╎ 1 @Base/condition.jl:136 wait ╎ ╎ ╎ 1 @Base/condition.jl:141 wait(c::Base.GenericCondition{Base.Thre… ╎ ╎ ╎ 1 @Base/task.jl:1199 wait() ╎ ╎ ╎ 1 @Base/task.jl:1187 poptask(W::Base.IntrusiveLinkedListSynchr… Thread 2 (default) Task 0x0000774dd5400100 Total snapshots: 1. Utilization: 0% ╎1 @Base/Base.jl:353 (::Base.var"#start_profile_listener##0#start_profile_lis… ╎ 1 @Base/Base.jl:333 profile_printing_listener(cond::Base.AsyncCondition) ╎ 1 @Base/asyncevent.jl:185 _trywait(t::Base.AsyncCondition) ╎ 1 @Base/condition.jl:136 wait ╎ 1 @Base/condition.jl:141 wait(c::Base.GenericCondition{Base.Threads.Spin… ╎ 1 @Base/task.jl:1199 wait() ╎ ╎ 1 @Base/task.jl:1187 poptask(W::Base.IntrusiveLinkedListSynchronized{T… [418] signal 15: Terminated in expression starting at none:1 unknown function (ip: 0x70139fbb8f14) at /lib/x86_64-linux-gnu/libc.so.6 pthread_cond_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv_cond_wait at /workspace/srcdir/libuv/src/unix/thread.c:822 ijl_task_get_next at /source/src/scheduler.c:520 [659] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/MLJ/o25pB/src/MLJ.jl:53 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:184 unknown function (ip: 0x774de31bef14) at /lib/x86_64-linux-gnu/libc.so.6 pthread_cond_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv_cond_wait at /workspace/srcdir/libuv/src/unix/thread.c:822 ijl_task_get_next at /source/src/scheduler.c:520 [611] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/TMLECLI/6jtBg/src/TMLECLI.jl:6 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 [699] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/MLJIteration/gRW1S/src/MLJIteration.jl:4 __libc_free at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: (nil)) at (unknown file) Allocations: 3069346 (Pool: 3069315; Big: 31); GC: 5 poptask at ./task.jl:1187 poptask at ./task.jl:1187 poptask at ./task.jl:1187 poptask at ./task.jl:1187 wait at ./task.jl:1199 wait at ./task.jl:1199 wait at ./task.jl:1199 wait at ./task.jl:1199 wait_no_relock at ./lock.jl:253 #wait#400 at ./condition.jl:141 #wait#400 at ./condition.jl:141 #wait#400 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:185 wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:185 #633 at ./asyncevent.jl:359 unknown function (ip: 0x7dd76362826f) at (unknown file) _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:185 jl_apply at /source/src/julia.h:2290 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) Allocations: 21733978 (Pool: 21733601; Big: 377); GC: 15 slowlock at ./lock.jl:239 profile_printing_listener at ./Base.jl:333 #633 at ./asyncevent.jl:359 lock at ./lock.jl:195 [inlined] macro expansion at ./lock.jl:374 [inlined] require_stdlib at ./loading.jl:2792 #start_profile_listener##0 at ./Base.jl:353 jfptr_YY.633_73496.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 jl_apply at /source/src/julia.h:2290 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) Allocations: 17551657 (Pool: 17551376; Big: 281); GC: 16 require_stdlib at ./loading.jl:2788 [inlined] macro expansion at ./some.jl:158 [inlined] profile_printing_listener at ./Base.jl:334 jfptr_YY.start_profile_listenerYY.YY.0_59886.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 jl_apply at /source/src/julia.h:2290 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 #start_profile_listener##0 at ./Base.jl:353 poptask at ./task.jl:1187 jfptr_YY.start_profile_listenerYY.YY.0_59886.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 jl_apply at /source/src/julia.h:2290 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 wait at ./task.jl:1199 poptask at ./task.jl:1187 #wait#400 at ./condition.jl:141 wait at ./task.jl:1199 wait at ./condition.jl:136 [inlined] wait at ./process.jl:694 #wait#400 at ./condition.jl:141 wait at ./process.jl:687 [inlined] success at ./process.jl:556 wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:185 #run#704 at ./process.jl:513 run at ./process.jl:510 unknown function (ip: 0x774dd9a4453b) at (unknown file) _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 jl_apply at /source/src/julia.h:2290 [inlined] do_call at /source/src/interpreter.c:124 eval_value at /source/src/interpreter.c:242 #633 at ./asyncevent.jl:359 eval_stmt_value at /source/src/interpreter.c:193 [inlined] eval_body at /source/src/interpreter.c:692 eval_body at /source/src/interpreter.c:557 eval_body at /source/src/interpreter.c:557 jl_interpret_toplevel_thunk at /source/src/interpreter.c:897 jl_toplevel_eval_flex at /source/src/toplevel.c:1032 jl_toplevel_eval_flex at /source/src/toplevel.c:972 ijl_toplevel_eval at /source/src/toplevel.c:1044 ijl_toplevel_eval_in at /source/src/toplevel.c:1089 jfptr_YY.633_73496.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 jl_apply at /source/src/julia.h:2290 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) Allocations: 15340012 (Pool: 15339836; Big: 176); GC: 29 eval at ./boot.jl:488 include_string at ./loading.jl:2855 _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 _include at ./loading.jl:2915 include at ./Base.jl:307 exec_options at ./client.jl:328 _start at ./client.jl:560 jfptr__start_63968.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 jl_apply at /source/src/julia.h:2290 [inlined] true_main at /source/src/jlapi.c:964 jl_repl_entrypoint at /source/src/jlapi.c:1124 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x774de3160249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) Allocations: 16767724 (Pool: 16766304; Big: 1420); GC: 12 PkgEval terminated after 2766.54s: test duration exceeded the time limit