Package evaluation of SimSearchManifoldLearning on Julia 1.13.0-DEV.123 (e910e6fb06*) started at 2025-03-01T20:57:08.337 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 7.32s ################################################################################ # Installation # Installing SimSearchManifoldLearning... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [ca7ab67e] + SimSearchManifoldLearning v0.2.10 Updating `~/.julia/environments/v1.13/Manifest.toml` [79e6a3ab] + Adapt v4.2.0 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [7d9fca2a] + Arpack v0.5.4 [4fba245c] + ArrayInterface v7.18.0 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [2a0fbf3d] + CPUSummary v0.2.6 [fb6a15b2] + CloseOpenIntervals v0.1.13 [861a8166] + Combinatorics v1.0.2 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.16.0 [187b0558] + ConstructionBase v1.5.8 [adafc99b] + CpuId v0.3.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.20 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.117 [ffbed154] + DocStringExtensions v0.9.3 [5789e2e9] + FileIO v1.17.0 [1a297f60] + FillArrays v1.13.0 [6a86dc24] + FiniteDiff v2.27.0 [f6369f11] + ForwardDiff v0.10.38 [86223c79] + Graphs v1.12.0 [3e5b6fbb] + HostCPUFeatures v0.1.17 [34004b35] + HypergeometricFunctions v0.3.27 [615f187c] + IfElse v0.1.1 [d25df0c9] + Inflate v0.1.5 [92d709cd] + IrrationalConstants v0.2.4 ⌅ [033835bb] + JLD2 v0.4.54 [692b3bcd] + JLLWrappers v1.7.0 [10f19ff3] + LayoutPointers v0.1.17 [2ab3a3ac] + LogExpFunctions v0.3.29 [bdcacae8] + LoopVectorization v0.12.171 ⌅ [2fda8390] + LsqFit v0.12.1 [1914dd2f] + MacroTools v0.5.15 [06eb3307] + ManifoldLearning v0.9.0 [d125e4d3] + ManualMemory v0.1.8 [e1d29d7a] + Missings v1.2.0 ⌅ [6f286f6a] + MultivariateStats v0.9.0 [d41bc354] + NLSolversBase v7.8.3 [77ba4419] + NaNMath v1.1.2 [6fe1bfb0] + OffsetArrays v1.15.0 [87e2bd06] + OptimBase v2.0.2 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.32 [d96e819e] + Parameters v0.12.3 [f517fe37] + Polyester v0.7.16 [1d0040c9] + PolyesterWeave v0.2.2 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [94e857df] + SIMDTypes v0.1.0 [476501e8] + SLEEFPirates v0.6.43 ⌅ [0e966ebe] + SearchModels v0.3.3 [efcf1570] + Setfield v1.1.2 [ca7ab67e] + SimSearchManifoldLearning v0.2.10 [053f045d] + SimilaritySearch v0.11.10 [699a6c99] + SimpleTraits v0.9.4 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.0 [aedffcd0] + Static v1.1.1 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 ⌅ [2913bbd2] + StatsBase v0.33.21 [4c63d2b9] + StatsFuns v1.3.2 [7792a7ef] + StrideArraysCore v0.5.7 [8290d209] + ThreadingUtilities v0.5.2 [3bb67fe8] + TranscodingStreams v0.11.3 [3a884ed6] + UnPack v1.0.2 [3d5dd08c] + VectorizationBase v0.21.71 ⌅ [68821587] + Arpack_jll v3.5.1+1 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.11.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2024.12.31 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 3.46s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 267.49s ################################################################################ # Testing # Testing SimSearchManifoldLearning Status `/tmp/jl_9E1EoG/Project.toml` [7d9fca2a] Arpack v0.5.4 [b4f34e82] Distances v0.10.12 ⌅ [2fda8390] LsqFit v0.12.1 [06eb3307] ManifoldLearning v0.9.0 [f517fe37] Polyester v0.7.16 [ca7ab67e] SimSearchManifoldLearning v0.2.10 [053f045d] SimilaritySearch v0.11.10 [82ae8749] StatsAPI v1.7.0 [37e2e46d] LinearAlgebra v1.12.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_9E1EoG/Manifest.toml` [79e6a3ab] Adapt v4.2.0 [66dad0bd] AliasTables v1.1.3 [ec485272] ArnoldiMethod v0.4.0 [7d9fca2a] Arpack v0.5.4 [4fba245c] ArrayInterface v7.18.0 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [2a0fbf3d] CPUSummary v0.2.6 [fb6a15b2] CloseOpenIntervals v0.1.13 [861a8166] Combinatorics v1.0.2 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.16.0 [187b0558] ConstructionBase v1.5.8 [adafc99b] CpuId v0.3.1 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.20 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.117 [ffbed154] DocStringExtensions v0.9.3 [5789e2e9] FileIO v1.17.0 [1a297f60] FillArrays v1.13.0 [6a86dc24] FiniteDiff v2.27.0 [f6369f11] ForwardDiff v0.10.38 [86223c79] Graphs v1.12.0 [3e5b6fbb] HostCPUFeatures v0.1.17 [34004b35] HypergeometricFunctions v0.3.27 [615f187c] IfElse v0.1.1 [d25df0c9] Inflate v0.1.5 [92d709cd] IrrationalConstants v0.2.4 ⌅ [033835bb] JLD2 v0.4.54 [692b3bcd] JLLWrappers v1.7.0 [10f19ff3] LayoutPointers v0.1.17 [2ab3a3ac] LogExpFunctions v0.3.29 [bdcacae8] LoopVectorization v0.12.171 ⌅ [2fda8390] LsqFit v0.12.1 [1914dd2f] MacroTools v0.5.15 [06eb3307] ManifoldLearning v0.9.0 [d125e4d3] ManualMemory v0.1.8 [e1d29d7a] Missings v1.2.0 ⌅ [6f286f6a] MultivariateStats v0.9.0 [d41bc354] NLSolversBase v7.8.3 [77ba4419] NaNMath v1.1.2 [6fe1bfb0] OffsetArrays v1.15.0 [87e2bd06] OptimBase v2.0.2 [bac558e1] OrderedCollections v1.8.0 [90014a1f] PDMats v0.11.32 [d96e819e] Parameters v0.12.3 [f517fe37] Polyester v0.7.16 [1d0040c9] PolyesterWeave v0.2.2 [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [94e857df] SIMDTypes v0.1.0 [476501e8] SLEEFPirates v0.6.43 ⌅ [0e966ebe] SearchModels v0.3.3 [efcf1570] Setfield v1.1.2 [ca7ab67e] SimSearchManifoldLearning v0.2.10 [053f045d] SimilaritySearch v0.11.10 [699a6c99] SimpleTraits v0.9.4 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.0 [aedffcd0] Static v1.1.1 [0d7ed370] StaticArrayInterface v1.8.0 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 ⌅ [2913bbd2] StatsBase v0.33.21 [4c63d2b9] StatsFuns v1.3.2 [7792a7ef] StrideArraysCore v0.5.7 [8290d209] ThreadingUtilities v0.5.2 [3bb67fe8] TranscodingStreams v0.11.3 [3a884ed6] UnPack v1.0.2 [3d5dd08c] VectorizationBase v0.21.71 ⌅ [68821587] Arpack_jll v3.5.1+1 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.11.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2024.12.31 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.0.16+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.12.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/3z3g0/src/ThreadingUtilities.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in searchbatch(SimilaritySearch.AbstractSearchIndex, SimilaritySearch.AbstractContext, SimilaritySearch.AbstractDatabase, AbstractArray{SimilaritySearch.KnnResult, 1}) at /home/pkgeval/.julia/packages/SimilaritySearch/fkUaT/src/SimilaritySearch.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in checktask(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/3z3g0/src/threadtasks.jl 1.960700 seconds (703.03 k allocations: 36.842 MiB, 95.96% compilation time) WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in _parallel_append_items_loop!(SimilaritySearch.SearchGraph{DistType, DataType, AdjType, SType} where SType<:SimilaritySearch.LocalSearchAlgorithm where AdjType<:(SimilaritySearch.AdjacencyLists.AbstractAdjacencyList{EndPointType} where EndPointType) where DataType<:SimilaritySearch.AbstractDatabase where DistType<:Distances.SemiMetric, SimilaritySearch.SearchGraphContext, Any, Any) at /home/pkgeval/.julia/packages/SimilaritySearch/fkUaT/src/searchgraph/insertions.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in connect_reverse_links(SimilaritySearch.AdjacencyLists.AbstractAdjacencyList{EndPointType} where EndPointType, Integer, Integer) at /home/pkgeval/.julia/packages/SimilaritySearch/fkUaT/src/searchgraph/neighborhood.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in var"#fft#138"(Any, SimilaritySearch.var"#fft", Distances.SemiMetric, SimilaritySearch.AbstractDatabase, Integer) at /home/pkgeval/.julia/packages/SimilaritySearch/fkUaT/src/fft.jl computing farthest point 1, dmax: Inf, imax: 2, n: 3 computing farthest point 2, dmax: 3.6098778, imax: 3, n: 3 computing farthest point 3, dmax: 1.0202479, imax: 1, n: 3 (n, m, k, length(A.centers)) = (14, 4, 3, 3) WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in (::SimilaritySearch.var"#lossfun#create_error_function##2"{index, context, gold, knnlist, queries, ksearch, verbose, R, cov, vacc, vmax, vmin, m})(Any) at /home/pkgeval/.julia/packages/SimilaritySearch/fkUaT/src/opt.jl computing farthest point 1, dmax: Inf, imax: 3, n: 5 computing farthest point 2, dmax: 3.7552075, imax: 5, n: 5 computing farthest point 3, dmax: 1.5163763, imax: 2, n: 5 computing farthest point 4, dmax: 1.4943231, imax: 4, n: 5 (n, m, k, length(A.centers)) = (19, 5, 4, 4) computing farthest point 1, dmax: Inf, imax: 1, n: 5 computing farthest point 2, dmax: 3.6229951, imax: 4, n: 5 computing farthest point 3, dmax: 1.7430116, imax: 3, n: 5 computing farthest point 4, dmax: 1.2963961, imax: 2, n: 5 computing farthest point 5, dmax: 0.8943579, imax: 5, n: 5 (n, m, k, length(A.centers)) = (29, 6, 5, 5) computing farthest point 1, dmax: Inf, imax: 1, n: 6 computing farthest point 2, dmax: 3.6363845, imax: 4, n: 6 computing farthest point 3, dmax: 2.3886714, imax: 6, n: 6 computing farthest point 4, dmax: 1.9050175, imax: 3, n: 6 computing farthest point 5, dmax: 0.7750904, imax: 2, n: 6 computing farthest point 6, dmax: 0.5120731, imax: 5, n: 6 (n, m, k, length(A.centers)) = (39, 7, 6, 6) computing farthest point 1, dmax: Inf, imax: 3, n: 7 computing farthest point 2, dmax: 3.0959246, imax: 4, n: 7 computing farthest point 3, dmax: 1.8819991, imax: 5, n: 7 computing farthest point 4, dmax: 1.8364787, imax: 1, n: 7 computing farthest point 5, dmax: 1.4417367, imax: 7, n: 7 computing farthest point 6, dmax: 1.1939807, imax: 2, n: 7 computing farthest point 7, dmax: 0.88711107, imax: 6, n: 7 (n, m, k, length(A.centers)) = (59, 8, 7, 7) computing farthest point 1, dmax: Inf, imax: 10, n: 10 computing farthest point 2, dmax: 3.7365258, imax: 7, n: 10 computing farthest point 3, dmax: 2.0754478, imax: 6, n: 10 computing farthest point 4, dmax: 1.9597338, imax: 5, n: 10 computing farthest point 5, dmax: 1.0735824, imax: 3, n: 10 computing farthest point 6, dmax: 1.0727998, imax: 9, n: 10 computing farthest point 7, dmax: 0.7831395, imax: 1, n: 10 computing farthest point 8, dmax: 0.7750904, imax: 2, n: 10 computing farthest point 9, dmax: 0.40420613, imax: 8, n: 10 (n, m, k, length(A.centers)) = (89, 10, 9, 9) append_items! sp=125, ep=129, n=129, BeamSearch bsize: Int32 2 Δ: Float32 0.8162979f0 maxvisits: Int64 74 , 2025-03-01T21:03:35.521 append_items! sp=185, ep=189, n=189, BeamSearch bsize: Int32 2 Δ: Float32 0.8162979f0 maxvisits: Int64 74 , 2025-03-01T21:03:35.522 computing farthest point 1, dmax: Inf, imax: 2, n: 18 computing farthest point 2, dmax: 3.2402751, imax: 5, n: 18 computing farthest point 3, dmax: 2.009526, imax: 14, n: 18 computing farthest point 4, dmax: 1.9897327, imax: 7, n: 18 computing farthest point 5, dmax: 1.534472, imax: 1, n: 18 computing farthest point 6, dmax: 1.2474085, imax: 15, n: 18 computing farthest point 7, dmax: 1.2412522, imax: 18, n: 18 computing farthest point 8, dmax: 1.1913879, imax: 8, n: 18 computing farthest point 9, dmax: 1.0804392, imax: 17, n: 18 computing farthest point 10, dmax: 0.86241645, imax: 4, n: 18 computing farthest point 11, dmax: 0.8341119, imax: 11, n: 18 computing farthest point 12, dmax: 0.7947044, imax: 9, n: 18 computing farthest point 13, dmax: 0.77986425, imax: 10, n: 18 computing farthest point 14, dmax: 0.60282207, imax: 12, n: 18 computing farthest point 15, dmax: 0.30829573, imax: 13, n: 18 computing farthest point 16, dmax: 0.30434844, imax: 3, n: 18 computing farthest point 17, dmax: 0.277551, imax: 6, n: 18 (n, m, k, length(A.centers)) = (294, 18, 17, 17) computing farthest point 1, dmax: Inf, imax: 10, n: 20 computing farthest point 2, dmax: 4.158539, imax: 6, n: 20 computing farthest point 3, dmax: 2.383359, imax: 4, n: 20 computing farthest point 4, dmax: 2.1898685, imax: 9, n: 20 computing farthest point 5, dmax: 1.6483208, imax: 18, n: 20 computing farthest point 6, dmax: 1.2085334, imax: 13, n: 20 computing farthest point 7, dmax: 1.1739198, imax: 20, n: 20 computing farthest point 8, dmax: 1.1383662, imax: 2, n: 20 computing farthest point 9, dmax: 1.03468, imax: 15, n: 20 computing farthest point 10, dmax: 0.90336514, imax: 3, n: 20 computing farthest point 11, dmax: 0.88146883, imax: 7, n: 20 computing farthest point 12, dmax: 0.8210247, imax: 19, n: 20 computing farthest point 13, dmax: 0.6089239, imax: 17, n: 20 computing farthest point 14, dmax: 0.57847196, imax: 11, n: 20 computing farthest point 15, dmax: 0.5737279, imax: 16, n: 20 computing farthest point 16, dmax: 0.56662655, imax: 14, n: 20 computing farthest point 17, dmax: 0.5417126, imax: 8, n: 20 computing farthest point 18, dmax: 0.5054387, imax: 1, n: 20 computing farthest point 19, dmax: 0.36289948, imax: 12, n: 20 computing farthest point 20, dmax: 0.07270083, imax: 5, n: 20 (n, m, k, length(A.centers)) = (439, 21, 20, 20) computing farthest point 1, dmax: Inf, imax: 6, n: 25 computing farthest point 2, dmax: 3.5956485, imax: 9, n: 25 computing farthest point 3, dmax: 2.0977569, imax: 5, n: 25 computing farthest point 4, dmax: 1.8865482, imax: 20, n: 25 computing farthest point 5, dmax: 1.840197, imax: 11, n: 25 computing farthest point 6, dmax: 1.7205224, imax: 10, n: 25 computing farthest point 7, dmax: 1.2052239, imax: 18, n: 25 computing farthest point 8, dmax: 1.1981373, imax: 2, n: 25 computing farthest point 9, dmax: 0.9256827, imax: 22, n: 25 computing farthest point 10, dmax: 0.85550004, imax: 19, n: 25 computing farthest point 11, dmax: 0.7702824, imax: 21, n: 25 computing farthest point 12, dmax: 0.71237427, imax: 12, n: 25 computing farthest point 13, dmax: 0.60557735, imax: 8, n: 25 computing farthest point 14, dmax: 0.5948549, imax: 13, n: 25 computing farthest point 15, dmax: 0.5471629, imax: 14, n: 25 computing farthest point 16, dmax: 0.5231309, imax: 23, n: 25 computing farthest point 17, dmax: 0.5225013, imax: 15, n: 25 computing farthest point 18, dmax: 0.40282375, imax: 7, n: 25 computing farthest point 19, dmax: 0.3950917, imax: 17, n: 25 computing farthest point 20, dmax: 0.33140084, imax: 16, n: 25 computing farthest point 21, dmax: 0.28928173, imax: 4, n: 25 computing farthest point 22, dmax: 0.24142656, imax: 3, n: 25 computing farthest point 23, dmax: 0.18795839, imax: 24, n: 25 computing farthest point 24, dmax: 0.18109222, imax: 25, n: 25 computing farthest point 25, dmax: 0.14793125, imax: 1, n: 25 (n, m, k, length(A.centers)) = (659, 26, 25, 25) computing farthest point 1, dmax: Inf, imax: 24, n: 30 computing farthest point 2, dmax: 3.825081, imax: 2, n: 30 computing farthest point 3, dmax: 2.0288012, imax: 7, n: 30 computing farthest point 4, dmax: 1.9444926, imax: 23, n: 30 computing farthest point 5, dmax: 1.7524493, imax: 25, n: 30 computing farthest point 6, dmax: 1.6004231, imax: 26, n: 30 computing farthest point 7, dmax: 1.3161142, imax: 14, n: 30 computing farthest point 8, dmax: 1.2501975, imax: 6, n: 30 computing farthest point 9, dmax: 1.2246335, imax: 13, n: 30 computing farthest point 10, dmax: 1.1956276, imax: 16, n: 30 computing farthest point 11, dmax: 0.96553206, imax: 28, n: 30 computing farthest point 12, dmax: 0.9134348, imax: 1, n: 30 computing farthest point 13, dmax: 0.90887785, imax: 3, n: 30 computing farthest point 14, dmax: 0.76196474, imax: 18, n: 30 computing farthest point 15, dmax: 0.6593309, imax: 5, n: 30 computing farthest point 16, dmax: 0.65278774, imax: 9, n: 30 computing farthest point 17, dmax: 0.605809, imax: 29, n: 30 computing farthest point 18, dmax: 0.5428074, imax: 21, n: 30 computing farthest point 19, dmax: 0.518078, imax: 22, n: 30 computing farthest point 20, dmax: 0.46922576, imax: 30, n: 30 computing farthest point 21, dmax: 0.4111538, imax: 17, n: 30 computing farthest point 22, dmax: 0.4054809, imax: 11, n: 30 computing farthest point 23, dmax: 0.34682643, imax: 20, n: 30 computing farthest point 24, dmax: 0.3205554, imax: 4, n: 30 computing farthest point 25, dmax: 0.29907236, imax: 19, n: 30 computing farthest point 26, dmax: 0.28414288, imax: 10, n: 30 computing farthest point 27, dmax: 0.16594455, imax: 27, n: 30 computing farthest point 28, dmax: 0.16466875, imax: 15, n: 30 computing farthest point 29, dmax: 0.13764359, imax: 8, n: 30 computing farthest point 30, dmax: 0.11111894, imax: 12, n: 30 computing farthest point 31, dmax: 0.0, imax: 1, n: 30 (n, m, k, length(A.centers)) = (989, 32, 31, 31) 0.364713 seconds (255.59 k allocations: 13.221 MiB, 97.16% compilation time) 0.643750 seconds (340.61 k allocations: 17.731 MiB, 3.20% gc time, 95.35% compilation time) computing farthest point 1, dmax: Inf, imax: 1, n: 2 computing farthest point 2, dmax: 2.1409936, imax: 2, n: 2 computing farthest point 3, dmax: 0.0, imax: 1, n: 2 (n, m, k, length(A.centers)) = (14, 4, 3, 3) computing farthest point 1, dmax: Inf, imax: 5, n: 5 computing farthest point 2, dmax: 3.5347106, imax: 1, n: 5 computing farthest point 3, dmax: 1.7206368, imax: 2, n: 5 computing farthest point 4, dmax: 0.88817406, imax: 4, n: 5 (n, m, k, length(A.centers)) = (19, 5, 4, 4) computing farthest point 1, dmax: Inf, imax: 2, n: 5 computing farthest point 2, dmax: 1.8881975, imax: 4, n: 5 computing farthest point 3, dmax: 1.058062, imax: 1, n: 5 computing farthest point 4, dmax: 0.6812944, imax: 5, n: 5 computing farthest point 5, dmax: 0.43081364, imax: 3, n: 5 (n, m, k, length(A.centers)) = (29, 6, 5, 5) computing farthest point 1, dmax: Inf, imax: 7, n: 7 computing farthest point 2, dmax: 3.2477686, imax: 4, n: 7 computing farthest point 3, dmax: 2.0027223, imax: 6, n: 7 computing farthest point 4, dmax: 1.4924868, imax: 2, n: 7 computing farthest point 5, dmax: 1.0673798, imax: 1, n: 7 computing farthest point 6, dmax: 0.51913124, imax: 5, n: 7 (n, m, k, length(A.centers)) = (39, 7, 6, 6) computing farthest point 1, dmax: Inf, imax: 3, n: 7 computing farthest point 2, dmax: 1.7646769, imax: 2, n: 7 computing farthest point 3, dmax: 1.4851568, imax: 6, n: 7 computing farthest point 4, dmax: 1.172286, imax: 1, n: 7 computing farthest point 5, dmax: 1.1269898, imax: 4, n: 7 computing farthest point 6, dmax: 0.7307053, imax: 5, n: 7 computing farthest point 7, dmax: 0.69734675, imax: 7, n: 7 (n, m, k, length(A.centers)) = (59, 8, 7, 7) computing farthest point 1, dmax: Inf, imax: 10, n: 10 computing farthest point 2, dmax: 3.4729218, imax: 1, n: 10 computing farthest point 3, dmax: 1.8015984, imax: 7, n: 10 computing farthest point 4, dmax: 1.531523, imax: 8, n: 10 computing farthest point 5, dmax: 1.3801066, imax: 2, n: 10 computing farthest point 6, dmax: 1.269636, imax: 9, n: 10 computing farthest point 7, dmax: 1.1661458, imax: 3, n: 10 computing farthest point 8, dmax: 1.1426809, imax: 6, n: 10 computing farthest point 9, dmax: 0.8249838, imax: 4, n: 10 (n, m, k, length(A.centers)) = (89, 10, 9, 9) computing farthest point 1, dmax: Inf, imax: 5, n: 18 computing farthest point 2, dmax: 3.9835858, imax: 7, n: 18 computing farthest point 3, dmax: 1.9903873, imax: 12, n: 18 computing farthest point 4, dmax: 1.7301537, imax: 2, n: 18 computing farthest point 5, dmax: 1.4049942, imax: 3, n: 18 computing farthest point 6, dmax: 1.4028385, imax: 8, n: 18 computing farthest point 7, dmax: 1.0023892, imax: 1, n: 18 computing farthest point 8, dmax: 0.9886562, imax: 16, n: 18 computing farthest point 9, dmax: 0.93992156, imax: 15, n: 18 computing farthest point 10, dmax: 0.8407768, imax: 6, n: 18 computing farthest point 11, dmax: 0.6142604, imax: 4, n: 18 computing farthest point 12, dmax: 0.6078651, imax: 14, n: 18 computing farthest point 13, dmax: 0.58944947, imax: 10, n: 18 computing farthest point 14, dmax: 0.53295666, imax: 13, n: 18 computing farthest point 15, dmax: 0.4484142, imax: 17, n: 18 computing farthest point 16, dmax: 0.41475534, imax: 9, n: 18 computing farthest point 17, dmax: 0.35788754, imax: 18, n: 18 (n, m, k, length(A.centers)) = (294, 18, 17, 17) append_items! sp=350, ep=354, n=354, BeamSearch bsize: Int32 2 Δ: Float32 0.7888578f0 maxvisits: Int64 94 , 2025-03-01T21:03:52.562 computing farthest point 1, dmax: Inf, imax: 5, n: 20 computing farthest point 2, dmax: 3.4612942, imax: 13, n: 20 computing farthest point 3, dmax: 1.8811982, imax: 7, n: 20 computing farthest point 4, dmax: 1.8121675, imax: 8, n: 20 computing farthest point 5, dmax: 1.3308402, imax: 1, n: 20 computing farthest point 6, dmax: 1.2096051, imax: 18, n: 20 computing farthest point 7, dmax: 1.123735, imax: 3, n: 20 computing farthest point 8, dmax: 1.0860115, imax: 12, n: 20 computing farthest point 9, dmax: 0.9261258, imax: 11, n: 20 computing farthest point 10, dmax: 0.7211316, imax: 16, n: 20 computing farthest point 11, dmax: 0.59320855, imax: 17, n: 20 computing farthest point 12, dmax: 0.51800287, imax: 9, n: 20 computing farthest point 13, dmax: 0.48732486, imax: 6, n: 20 computing farthest point 14, dmax: 0.48201862, imax: 19, n: 20 computing farthest point 15, dmax: 0.48078823, imax: 15, n: 20 computing farthest point 16, dmax: 0.43878815, imax: 10, n: 20 computing farthest point 17, dmax: 0.4127123, imax: 4, n: 20 computing farthest point 18, dmax: 0.35837606, imax: 2, n: 20 computing farthest point 19, dmax: 0.14163175, imax: 14, n: 20 computing farthest point 20, dmax: 0.11357278, imax: 20, n: 20 (n, m, k, length(A.centers)) = (439, 21, 20, 20) append_items! sp=450, ep=454, n=454, BeamSearch bsize: Int32 72 Δ: Float32 0.6f0 maxvisits: Int64 194 , 2025-03-01T21:03:52.599 append_items! sp=540, ep=544, n=544, BeamSearch bsize: Int32 72 Δ: Float32 0.6f0 maxvisits: Int64 194 , 2025-03-01T21:03:52.600 computing farthest point 1, dmax: Inf, imax: 3, n: 26 computing farthest point 2, dmax: 2.8591037, imax: 6, n: 26 computing farthest point 3, dmax: 2.0173395, imax: 4, n: 26 computing farthest point 4, dmax: 1.6701709, imax: 13, n: 26 computing farthest point 5, dmax: 1.326641, imax: 18, n: 26 computing farthest point 6, dmax: 1.0707351, imax: 21, n: 26 computing farthest point 7, dmax: 1.0009812, imax: 10, n: 26 computing farthest point 8, dmax: 0.97520435, imax: 5, n: 26 computing farthest point 9, dmax: 0.87232447, imax: 2, n: 26 computing farthest point 10, dmax: 0.83808416, imax: 19, n: 26 computing farthest point 11, dmax: 0.83127785, imax: 23, n: 26 computing farthest point 12, dmax: 0.77273804, imax: 20, n: 26 computing farthest point 13, dmax: 0.58986294, imax: 11, n: 26 computing farthest point 14, dmax: 0.52991307, imax: 15, n: 26 computing farthest point 15, dmax: 0.49751645, imax: 8, n: 26 computing farthest point 16, dmax: 0.46075243, imax: 9, n: 26 computing farthest point 17, dmax: 0.41707325, imax: 16, n: 26 computing farthest point 18, dmax: 0.40884674, imax: 26, n: 26 computing farthest point 19, dmax: 0.3976344, imax: 12, n: 26 computing farthest point 20, dmax: 0.36196825, imax: 14, n: 26 computing farthest point 21, dmax: 0.34861472, imax: 1, n: 26 computing farthest point 22, dmax: 0.23180373, imax: 7, n: 26 computing farthest point 23, dmax: 0.2155369, imax: 24, n: 26 computing farthest point 24, dmax: 0.18341532, imax: 22, n: 26 computing farthest point 25, dmax: 0.13866884, imax: 25, n: 26 (n, m, k, length(A.centers)) = (659, 26, 25, 25) computing farthest point 1, dmax: Inf, imax: 5, n: 32 computing farthest point 2, dmax: 2.6664424, imax: 17, n: 32 computing farthest point 3, dmax: 1.9930134, imax: 9, n: 32 computing farthest point 4, dmax: 1.7424572, imax: 24, n: 32 computing farthest point 5, dmax: 1.3523297, imax: 26, n: 32 computing farthest point 6, dmax: 1.3504158, imax: 19, n: 32 computing farthest point 7, dmax: 1.2855134, imax: 2, n: 32 computing farthest point 8, dmax: 1.1001222, imax: 8, n: 32 computing farthest point 9, dmax: 1.0049559, imax: 7, n: 32 computing farthest point 10, dmax: 0.9114159, imax: 20, n: 32 computing farthest point 11, dmax: 0.7788978, imax: 3, n: 32 computing farthest point 12, dmax: 0.7634327, imax: 27, n: 32 computing farthest point 13, dmax: 0.76288015, imax: 28, n: 32 computing farthest point 14, dmax: 0.73172927, imax: 23, n: 32 computing farthest point 15, dmax: 0.6966144, imax: 14, n: 32 computing farthest point 16, dmax: 0.59934074, imax: 22, n: 32 computing farthest point 17, dmax: 0.57856303, imax: 15, n: 32 computing farthest point 18, dmax: 0.57044625, imax: 4, n: 32 computing farthest point 19, dmax: 0.5664511, imax: 1, n: 32 computing farthest point 20, dmax: 0.5150042, imax: 16, n: 32 computing farthest point 21, dmax: 0.5005476, imax: 29, n: 32 computing farthest point 22, dmax: 0.45424607, imax: 25, n: 32 computing farthest point 23, dmax: 0.37519, imax: 31, n: 32 computing farthest point 24, dmax: 0.37303722, imax: 30, n: 32 computing farthest point 25, dmax: 0.34769082, imax: 13, n: 32 computing farthest point 26, dmax: 0.3457449, imax: 21, n: 32 computing farthest point 27, dmax: 0.32187885, imax: 12, n: 32 computing farthest point 28, dmax: 0.32064644, imax: 11, n: 32 computing farthest point 29, dmax: 0.25290424, imax: 6, n: 32 computing farthest point 30, dmax: 0.16243726, imax: 10, n: 32 computing farthest point 31, dmax: 0.13154352, imax: 18, n: 32 (n, m, k, length(A.centers)) = (989, 32, 31, 31) 0.351101 seconds (255.59 k allocations: 13.220 MiB, 97.84% compilation time) Test Summary: | Pass Total Time SimilaritySearch for ManifoldLearning api | 4 4 1m17.0s Test Summary: | Pass Total Time utils tests | 3 3 6.5s WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in var"#optimize_embedding#3"(Real, Float32, Any, SimSearchManifoldLearning.var"#optimize_embedding", Any, AbstractArray{T, 2} where T, AbstractArray{T, 2} where T, Int64, Float32, Float32, Int64, Float32, Float32) at /home/pkgeval/.julia/packages/SimSearchManifoldLearning/PdXsX/src/embeddings.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in var"#compute_membership_strengths#15"(Any, SimSearchManifoldLearning.var"#compute_membership_strengths", AbstractArray{T, 2} where T, AbstractArray{T, 2} where T, Integer, Bool) at /home/pkgeval/.julia/packages/SimSearchManifoldLearning/PdXsX/src/umap_.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in allknn(SimilaritySearch.AbstractSearchIndex, SimilaritySearch.AbstractContext, AbstractArray{Int32, 2}, AbstractArray{Float32, 2}) at /home/pkgeval/.julia/packages/SimilaritySearch/fkUaT/src/allknn.jl 1.307783 seconds (380.54 k allocations: 20.244 MiB, 100.00% compilation time) 0.000013 seconds (6 allocations: 208 bytes) 0.001410 seconds (8 allocations: 11.969 KiB) *** computing graph *** layout embedding RandomLayout *** fit ab / embedding *** opt embedding UMAP construction time cost report: - fuzzy graph: 1.076526166 - embedding init: 4.15e-6 - embedding opt: 0.066343125 1.274567 seconds (352.36 k allocations: 18.879 MiB, 99.91% compilation time) *** computing graph *** layout embedding RandomLayout *** fit ab / embedding *** opt embedding UMAP construction time cost report: - fuzzy graph: 0.000872971 - embedding init: 4.71e-6 - embedding opt: 0.06803362 0.001439 seconds (8 allocations: 11.969 KiB) *** computing graph *** layout embedding RandomLayout *** fit ab / embedding *** opt embedding UMAP construction time cost report: - fuzzy graph: 0.000948651 - embedding init: 4.07e-6 - embedding opt: 0.069227898 0.001379 seconds (8 allocations: 11.969 KiB) *** computing graph *** layout embedding SpectralLayout *** fit ab / embedding *** opt embedding UMAP construction time cost report: - fuzzy graph: 0.000884871 - embedding init: 8.267125228 - embedding opt: 0.066765141 0.001443 seconds (8 allocations: 12.000 KiB) *** computing graph *** layout embedding PrecomputedLayout *** fit ab / embedding *** opt embedding UMAP construction time cost report: - fuzzy graph: 0.000864042 - embedding init: 3.4e-7 - embedding opt: 0.073859684 0.001446 seconds (8 allocations: 11.969 KiB) *** computing graph *** layout embedding KnnGraphLayout *** fit ab / embedding *** opt embedding UMAP construction time cost report: - fuzzy graph: 0.000870452 - embedding init: 3.818e-5 - embedding opt: 0.070086509 0.001409 seconds (8 allocations: 12.000 KiB) *** computing graph *** layout embedding RandomLayout *** fit ab / embedding *** opt embedding UMAP construction time cost report: - fuzzy graph: 0.000843662 - embedding init: 2.77e-6 - embedding opt: 0.064016887 0.001395 seconds (8 allocations: 11.969 KiB) *** computing graph *** layout embedding RandomLayout *** fit ab / embedding *** opt embedding UMAP construction time cost report: - fuzzy graph: 0.000880792 - embedding init: 3.96e-6 - embedding opt: 0.069459096 0.001381 seconds (8 allocations: 11.969 KiB) *** computing graph *** layout embedding RandomLayout *** fit ab / embedding *** opt embedding UMAP construction time cost report: - fuzzy graph: 0.000862622 - embedding init: 3.95e-6 - embedding opt: 0.072189689 0.001431 seconds (8 allocations: 11.969 KiB) *** computing graph *** layout embedding RandomLayout *** fit ab / embedding *** opt embedding UMAP construction time cost report: - fuzzy graph: 0.000854812 - embedding init: 3.45e-6 - embedding opt: 0.066152098 (rhos, sigmas) = (Float32[1.0, 2.0, 3.0], Float32[1.9829102, 2.5358887, 2.6249695]) ┌ Info: [2.321931655873457, 2.321930914055594, 2.3219283113392373] │ diffs = │ 3-element Vector{Float64}: │ 3.560986094885976e-6 │ 2.819168231749103e-6 └ 2.164518750902289e-7 (:last => rhos, sigmas) = (:last => Float32[0.0, 1.0, 2.0], Float32[5.421011f-20, 5.421011f-20, 5.421011f-20]) (rows, cols, vals) = (Int32[1, 2, 2, 1, 3, 2], Int32[1, 1, 2, 2, 3, 3], Float32[0.0, 1.0, 0.0, 1.0, 0.0, 1.0]) [ Info: spectral_layout! [ Info: initialize_embedding [ Info: Matrix{Float32} => Matrix{Float32} [ Info: ===== umap predict ===== 0.000113 seconds (6 allocations: 944 bytes) *** computing graph *** layout embedding SpectralLayout ┌ Info: Arpack.XYAUPD_Exception(1) └ Error encountered in spectral_layout; defaulting to random layout *** fit ab / embedding *** opt embedding UMAP construction time cost report: - fuzzy graph: 7.207e-5 - embedding init: 0.084031887 - embedding opt: 8.305e-5 WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in searchbatch(SimilaritySearch.AbstractSearchIndex, SimilaritySearch.AbstractContext, SimilaritySearch.AbstractDatabase, AbstractArray{Int32, 2}, AbstractArray{Float32, 2}) at /home/pkgeval/.julia/packages/SimilaritySearch/fkUaT/src/SimilaritySearch.jl 0.000138 seconds (6 allocations: 944 bytes) *** computing graph *** layout embedding SpectralLayout ┌ Info: Arpack.XYAUPD_Exception(1) └ Error encountered in spectral_layout; defaulting to random layout *** fit ab / embedding *** opt embedding UMAP construction time cost report: - fuzzy graph: 6.7869e-5 - embedding init: 0.003786114 - embedding opt: 7.3239e-5 0.000125 seconds (6 allocations: 944 bytes) *** computing graph *** layout embedding SpectralLayout ┌ Info: Arpack.XYAUPD_Exception(1) └ Error encountered in spectral_layout; defaulting to random layout *** fit ab / embedding *** opt embedding UMAP construction time cost report: - fuzzy graph: 7.8219e-5 - embedding init: 0.003736464 - embedding opt: 6.5889e-5 Test Summary: | Pass Total Time umap tests | 44 44 1m40.2s Testing SimSearchManifoldLearning tests passed Testing completed after 231.12s PkgEval succeeded after 535.05s