Package evaluation of ScatteringOptics on Julia 1.13.0-DEV.123 (e910e6fb06*) started at 2025-03-01T23:35:15.006 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.28s ################################################################################ # Installation # Installing ScatteringOptics... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [e317c96f] + ScatteringOptics v0.1.9 Updating `~/.julia/environments/v1.13/Manifest.toml` [47edcb42] + ADTypes v1.13.0 [621f4979] + AbstractFFTs v1.5.0 [7f219486] + AbstractNFFTs v0.8.2 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.2.0 [dce04be8] + ArgCheck v2.4.0 [4fba245c] + ArrayInterface v7.18.0 [4c555306] + ArrayLayouts v1.11.1 [13072b0f] + AxisAlgorithms v1.1.0 [198e06fe] + BangBang v0.4.4 [9718e550] + Baselet v0.1.1 [26cce99e] + BasicInterpolators v0.7.1 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [70df07ce] + BracketingNonlinearSolve v1.1.0 [3b1b4be9] + CFITSIO v1.4.2 [2a0fbf3d] + CPUSummary v0.2.6 [49dc2e85] + Calculus v0.5.2 [d360d2e6] + ChainRulesCore v1.25.1 [fb6a15b2] + CloseOpenIntervals v0.1.13 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 ⌅ [6d8c423b] + ComradeBase 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[a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.11.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2024.12.31 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 4.86s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 844.87s ################################################################################ # Testing # Testing ScatteringOptics Status `/tmp/jl_kNwHUK/Project.toml` ⌅ [6d8c423b] ComradeBase v0.8.7 [ffbed154] DocStringExtensions v0.9.3 [9d0fa6a6] EHTUtils v0.1.2 [7a1cc6ca] FFTW v1.8.1 [34004b35] HypergeometricFunctions v0.3.27 [a98d9a8b] Interpolations v0.15.1 [033835bb] JLD2 v0.5.11 [8913a72c] NonlinearSolve v4.4.0 [1fd47b50] QuadGK v2.11.2 [e317c96f] ScatteringOptics v0.1.9 [276daf66] SpecialFunctions v2.5.0 [860ef19b] StableRNGs v1.0.2 [6ab34832] StationaryRandomFields v0.1.3 [10745b16] Statistics v1.11.1 ⌃ [d6343c73] VLBISkyModels v0.6.9 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_kNwHUK/Manifest.toml` [47edcb42] ADTypes v1.13.0 [621f4979] AbstractFFTs v1.5.0 [7f219486] AbstractNFFTs v0.8.2 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.2.0 [dce04be8] ArgCheck v2.4.0 [4fba245c] ArrayInterface v7.18.0 [4c555306] ArrayLayouts 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[ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.11.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2024.12.31 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.0.16+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.12.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling packages... 17871.1 ms ✓ ComradeBase 2394.9 ms ✓ StationaryRandomFields 5264.9 ms ✓ DiffEqBase → DiffEqBaseMeasurementsExt 4315.8 ms ✓ ComradeBase → ComradeBaseAdaptExt 6843.0 ms ✓ ComradeBase → ComradeBasePolyesterExt 75802.0 ms ? VLBISkyModels Info Given ScatteringOptics was explicitly requested, output will be shown live  WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/3z3g0/src/ThreadingUtilities.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/3z3g0/src/ThreadingUtilities.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/3z3g0/src/ThreadingUtilities.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/3z3g0/src/ThreadingUtilities.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/3z3g0/src/ThreadingUtilities.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/3z3g0/src/ThreadingUtilities.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/3z3g0/src/ThreadingUtilities.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/3z3g0/src/ThreadingUtilities.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/3z3g0/src/ThreadingUtilities.jl WARNING: Detected access to binding `NonlinearSolveFirstOrder.GeneralizedFirstOrderAlgorithm` in a world prior to its definition world.  Julia 1.12 has introduced more strict world age semantics for global bindings.  !!! This code may malfunction under Revise.  !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/3z3g0/src/ThreadingUtilities.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/3z3g0/src/ThreadingUtilities.jl WARNING: Detected access to binding `SimpleNonlinearSolve.SimpleNewtonRaphson` in a world prior to its definition world.  Julia 1.12 has introduced more strict world age semantics for global bindings.  !!! This code may malfunction under Revise.  !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/3z3g0/src/ThreadingUtilities.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/3z3g0/src/ThreadingUtilities.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/3z3g0/src/ThreadingUtilities.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/3z3g0/src/ThreadingUtilities.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/3z3g0/src/ThreadingUtilities.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/3z3g0/src/ThreadingUtilities.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/3z3g0/src/ThreadingUtilities.jl 606088.3 ms ✓ ScatteringOptics 6 dependencies successfully precompiled in 722 seconds. 285 already precompiled. 1 dependencies failed but may be precompilable after restarting julia 4 dependencies had output during precompilation: ┌ DiffEqBase → DiffEqBaseMeasurementsExt │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/3z3g0/src/ThreadingUtilities.jl └ ┌ VLBISkyModels │ WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Statistics.cov), SparseArrays.SparseMatrixCSC{Tv, Ti} where Ti<:Integer where Tv) in module SparseArraysExt at /home/pkgeval/.julia/packages/Statistics/gbcbG/ext/SparseArraysExt.jl:14 overwritten in module SparseArraysExt on the same line (check for duplicate calls to `include`). │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ ComradeBase → ComradeBasePolyesterExt │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/3z3g0/src/ThreadingUtilities.jl └ ┌ ScatteringOptics │ [Output was shown above] └ WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/3z3g0/src/ThreadingUtilities.jl [ Info: Testing visibility point functions [ Info: Testing scattering kernel functions [ Info: Testing refractive scattering functions ┌ Warning: Currently only loading stokes I. To load polarized quantities │ please call `load_fits(filename, IntensityMap{StokesParams})` └ @ VLBISkyModels ~/.julia/packages/VLBISkyModels/f1rva/src/io.jl:21 ┌ Warning: Assignment to `stablerng` in soft scope is ambiguous because a global variable by the same name exists: `stablerng` will be treated as a new local. Disambiguate by using `local stablerng` to suppress this warning or `global stablerng` to assign to the existing global variable. └ @ ~/.julia/packages/ScatteringOptics/sR2bM/test/internalconsistency.jl:67 ScatteringOptics.jl: Error During Test at /home/pkgeval/.julia/packages/ScatteringOptics/sR2bM/test/runtests.jl:8 Got exception outside of a @test LoadError: InexactError: Float64(NaN + NaN*im) Stacktrace: [1] Real @ ./complex.jl:44 [inlined] [2] convert @ ./number.jl:7 [inlined] [3] setindex!(A::Matrix{Float64}, x::ComplexF64, i::Int64) @ Base ./array.jl:985 [4] amplitude_map @ ~/.julia/packages/ScatteringOptics/sR2bM/src/scatteringmodels/phasescreens/powerlaw.jl:50 [inlined] [5] amplitude_map @ ~/.julia/packages/ScatteringOptics/sR2bM/src/scatteringmodels/phasescreens/powerlaw.jl:42 [inlined] [6] generate_signal_noise(psgen::StationaryRandomFields.PSNoiseGenerator{PhaseScreenPowerLaw{2, DipoleScatteringModel{Float64}, Float64}, StationaryRandomFields.ContinuousNoiseSignal{Float64, StationaryRandomFields.NoiseSignal{Tuple{Int64, Int64}}, Tuple, FFTW.rFFTWPlan{Float64, -1, false, 2, Tuple{Int64, Int64}}, AbstractFFTs.ScaledPlan{ComplexF64, FFTW.rFFTWPlan{ComplexF64, 1, false, 2, Tuple{Int64, Int64}}, Float64}}}, noise_screen::Matrix{ComplexF64}) @ StationaryRandomFields ~/.julia/packages/StationaryRandomFields/D1LJU/src/noisegenerators/psnoisegenerator.jl:30 [7] #phase_screen#18 @ ~/.julia/packages/ScatteringOptics/sR2bM/src/scatteringmodels/phasescreens/refractivemodel.jl:89 [inlined] [8] phase_screen @ ~/.julia/packages/ScatteringOptics/sR2bM/src/scatteringmodels/phasescreens/refractivemodel.jl:74 [inlined] [9] #scatter_image#19 @ ~/.julia/packages/ScatteringOptics/sR2bM/src/scatteringmodels/phasescreens/refractivemodel.jl:169 [inlined] [10] top-level scope @ ~/.julia/packages/ScatteringOptics/sR2bM/test/internalconsistency.jl:69 [11] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:308 [12] top-level scope @ ~/.julia/packages/ScatteringOptics/sR2bM/test/runtests.jl:9 [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1771 [inlined] [14] macro expansion @ ~/.julia/packages/ScatteringOptics/sR2bM/test/runtests.jl:9 [inlined] [15] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:308 [16] top-level scope @ none:6 [17] eval(m::Module, e::Any) @ Core ./boot.jl:488 [18] exec_options(opts::Base.JLOptions) @ Base ./client.jl:294 [19] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/ScatteringOptics/sR2bM/test/internalconsistency.jl:63 Test Summary: | Pass Error Total Time ScatteringOptics.jl | 18 1 19 1m20.8s RNG of the outermost testset: Random.Xoshiro(0xbe0b355c70fe5e09, 0x0f06c67a7ed6ec5c, 0x65ca619d06845c9a, 0xe88217a33a1bdd1c, 0x43a21653a4dbfde3) ERROR: LoadError: Some tests did not pass: 18 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/ScatteringOptics/sR2bM/test/runtests.jl:8 Testing failed after 848.39s ERROR: LoadError: Package ScatteringOptics errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2386 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2241 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:486 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:307 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [12] _start() @ Base ./client.jl:560 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 1740.75s: illegal method overwrites during precompilation