Package evaluation of IMASdd on Julia 1.13.0-DEV.123 (e910e6fb06*) started at 2025-03-01T18:59:33.744 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 7.96s ################################################################################ # Installation # Installing IMASdd... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [c5a45a97] + IMASdd v4.0.1 Updating `~/.julia/environments/v1.13/Manifest.toml` [1520ce14] + AbstractTrees v0.4.5 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.16.0 [7204ce3a] + CoordinateConventions v1.0.5 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 ⌅ [82cc6244] + DataInterpolations v6.6.0 [e2d170a0] + DataValueInterfaces v1.0.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [ffbed154] + DocStringExtensions v0.9.3 [e2ba6199] + ExprTools v0.1.10 [64ca27bc] + FindFirstFunctions v1.4.1 [f6369f11] + ForwardDiff v0.10.38 [f67ccb44] + HDF5 v0.17.2 [c5a45a97] + IMASdd v4.0.1 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [b964fa9f] + LaTeXStrings v1.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.15 [77ba4419] + NaNMath v1.1.2 [bac558e1] + OrderedCollections v1.8.0 [69de0a69] + Parsers v2.8.1 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [276daf66] + SpecialFunctions v2.5.0 [1e83bf80] + StaticArraysCore v1.4.3 [892a3eda] + StringManipulation v0.4.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [a759f4b9] + TimerOutputs v0.5.28 [0234f1f7] + HDF5_jll v1.14.5+0 [e33a78d0] + Hwloc_jll v2.12.0+0 [7cb0a576] + MPICH_jll v4.3.0+0 [f1f71cc9] + MPItrampoline_jll v5.5.2+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.7+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [477f73a3] + libaec_jll v1.1.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.11.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2024.12.31 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 8.44s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 354.25s ################################################################################ # Testing # Testing IMASdd Status `/tmp/jl_TSU0sb/Project.toml` [c5a45a97] IMASdd v4.0.1 [8dfed614] Test v1.11.0 Status `/tmp/jl_TSU0sb/Manifest.toml` [1520ce14] AbstractTrees v0.4.5 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.16.0 [7204ce3a] CoordinateConventions v1.0.5 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 ⌅ [82cc6244] DataInterpolations v6.6.0 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [ffbed154] DocStringExtensions v0.9.3 [e2ba6199] ExprTools v0.1.10 [64ca27bc] FindFirstFunctions v1.4.1 [f6369f11] ForwardDiff v0.10.38 [f67ccb44] HDF5 v0.17.2 [c5a45a97] IMASdd v4.0.1 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [b964fa9f] LaTeXStrings v1.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.15 [77ba4419] NaNMath v1.1.2 [bac558e1] OrderedCollections v1.8.0 [69de0a69] Parsers v2.8.1 [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [276daf66] SpecialFunctions v2.5.0 [1e83bf80] StaticArraysCore v1.4.3 [892a3eda] StringManipulation v0.4.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [a759f4b9] TimerOutputs v0.5.28 [0234f1f7] HDF5_jll v1.14.5+0 [e33a78d0] Hwloc_jll v2.12.0+0 [7cb0a576] MPICH_jll v4.3.0+0 [f1f71cc9] MPItrampoline_jll v5.5.2+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [fe0851c0] OpenMPI_jll v5.0.7+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [477f73a3] libaec_jll v1.1.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.11.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2024.12.31 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.0.16+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.12.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Test Summary: | Pass Total Time IDS | 31 31 2m47.1s Test Summary: | Pass Total Time goto | 5 5 0.0s Test Summary: | Pass Total Time IDS_IMAS | 27 27 10.8s Test Summary: | Pass Total Time ggd_grid | 2 2 0.3s Test Summary: | Pass Total Time utils | 3 3 0.4s Test Summary: | Pass Total Time convert | 2 2 11.6s WARNING: Method definition get_expressions(Type{Base.Val{:dynamic}}) in module Main at /home/pkgeval/.julia/packages/IMASdd/RKUro/test/test_expressions_dicts.jl:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition get_expressions(Type{Base.Val{:onetime}}) in module Main at /home/pkgeval/.julia/packages/IMASdd/RKUro/test/test_expressions_dicts.jl:7 overwritten on the same line (check for duplicate calls to `include`). Test Summary: | Pass Total Time expressions | 25 25 8m50.0s WARNING: Method definition get_expressions(Type{Base.Val{:dynamic}}) in module Main at /home/pkgeval/.julia/packages/IMASdd/RKUro/test/test_expressions_dicts.jl:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition get_expressions(Type{Base.Val{:onetime}}) in module Main at /home/pkgeval/.julia/packages/IMASdd/RKUro/test/test_expressions_dicts.jl:7 overwritten on the same line (check for duplicate calls to `include`). Test Summary: | Pass Total Time time_ids | 65 65 10.2s Test Summary: | Pass Total Time time_array | 26 26 8.1s Test Summary: | Pass Total Time get_timeslice | 17 17 6.4s Test Summary: | Pass Total Time Interpolations | 1 1 1.5s WARNING: Method definition get_expressions(Type{Base.Val{:dynamic}}) in module Main at /home/pkgeval/.julia/packages/IMASdd/RKUro/test/test_expressions_dicts.jl:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition get_expressions(Type{Base.Val{:onetime}}) in module Main at /home/pkgeval/.julia/packages/IMASdd/RKUro/test/test_expressions_dicts.jl:7 overwritten on the same line (check for duplicate calls to `include`). ┌ Warning: `compress=0` keyword option is deprecated, use `deflate=0` instead │ caller = setproperty!(p::HDF5.DatasetCreateProperties, name::Symbol, val::Int64) at properties.jl:59 └ @ Core ~/.julia/packages/HDF5/Z859u/src/properties.jl:59 [ Info: Uncompressed file size: 1318187 bytes [ Info: Compressed file size: 1254296 bytes Test Summary: | Pass Total Time IO | 8 8 11m01.8s dd.core_sources.time ↳ Type: Vector{Float64} vs Vector{Float64} ↳ All elements (1) are different [1-th: 0.0 vs 1.0] core_sources.time ↳ Type: Vector{Float64} vs Vector{Float64} ↳ All elements (1) are different [1-th: 0.0 vs 1.0] IDSvector ↳ Type: IMASdd.IDSvector{IMASdd.core_sources__source{Float64}} vs IMASdd.IDSvector{IMASdd.core_sources__source{Float64}} ↳ Length: (17) vs (5) dd.global_time ↳ Type: Float64 vs Float64 ↳ Value: 1.0 vs 100.0 dd.equilibrium.time_slice[1].profiles_2d[1].psi ↳ Type: Matrix{Float64} vs Matrix{Float64} ↳ Mismatch in 34 out of 289 elements: Too long to display all differences The followings are the first 20 differences [1-th: -0.21871790485263698 vs 0.0] [2-th: -0.4087645085734877 vs 0.0] [18-th: -0.2682511078235816 vs 0.0] [19-th: -0.44180407805116223 vs 0.0] [35-th: -0.2322237253960735 vs 0.0] [36-th: -0.3066018607529188 vs 0.0] [52-th: 0.03484414132709649 vs 0.0] [53-th: -0.10304780286045145 vs 0.0] [69-th: 0.2240979501303107 vs 0.0] [70-th: 0.041126961895368984 vs 0.0] [86-th: 0.2773317601233064 vs 0.0] [87-th: 0.0686723948855885 vs 0.0] [103-th: 0.27813834832915235 vs 0.0] [104-th: 0.046500186461232614 vs 0.0] [120-th: 0.26463137796280467 vs 0.0] [121-th: 0.022224628096895863 vs 0.0] [137-th: 0.27418945684145846 vs 0.0] [138-th: 0.031235416465385007 vs 0.0] [154-th: 0.31957964805800676 vs 0.0] [155-th: 0.06439407410728352 vs 0.0] dd.equilibrium.time_slice[1].profiles_1d.psi ↳ Type: Vector{Float64} vs Vector{Float64} ↳ Mismatch in 5 out of 17 elements: [1-th: -2.2838153987727208 vs 0.1942538205628067] [2-th: -2.1710138696685433] [3-th: -2.0582123405643657] [4-th: -1.9454108114601878] [5-th: -1.8326092823560105] [6-th: -1.719807753251833] [7-th: -1.6070062241476553 vs 0.25858382578755024] [8-th: -1.4942046950434775 vs 0.6328251218664988] [9-th: -1.3814031659393] [10-th: -1.2686016368351223] [11-th: -1.1558001077309448] [12-th: -1.042998578626767] [13-th: -0.9301970495225895 vs 0.7611905357588696] [14-th: -0.8173955204184119] [15-th: -0.7045939913142343 vs 0.9788210999269797] [16-th: -0.5917924622100565] [17-th: -0.4789909331058791] Array length mismatch at dd.core_sources.source: 17 vs 5 dd.core_sources.time ↳ Type: Vector{Float64} vs Vector{Float64} ↳ All elements (1) are different [1-th: 0.0 vs 1.0] dd.core_profiles.profiles_1d[1].j_total ↳ Type: Vector{Float64} vs Vector{Float64} ↳ Mismatch in 1 out of 11 elements: [1-th: 1.2625176938959924e6] [2-th: 1.4091005215663624e6 vs 0.0] [3-th: 1.6532157377286893e6] [4-th: 1.601215820495468e6] [5-th: 1.1399901546159687e6] [6-th: 885309.850126528] [7-th: 876211.8117932467] [8-th: 910710.0244690484] [9-th: 774939.1517631217] [10-th: 440976.9789840696] [11-th: 447924.32082996634] Type mismatch: IMASdd.equilibrium{Float64} vs IMASdd.dd{Float64} Test Summary: | Pass Total Time isequal | 7 7 6.5s WARNING: Method definition get_expressions(Type{Base.Val{:dynamic}}) in module Main at /home/pkgeval/.julia/packages/IMASdd/RKUro/test/test_expressions_dicts.jl:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition get_expressions(Type{Base.Val{:onetime}}) in module Main at /home/pkgeval/.julia/packages/IMASdd/RKUro/test/test_expressions_dicts.jl:7 overwritten on the same line (check for duplicate calls to `include`). ┌ Warning: h5merge: `/tmp/jl_dYLhGi/combined_test.h5` already exists. └ @ IMASdd ~/.julia/packages/IMASdd/RKUro/src/io.jl:1535 [ Info: jl_IOMxOf/22.h5 --> [HDF5] @ /tmp/jl_IOMxOf/22.h5 [ Info: Skipping [../../../../../../../tmp/jl_IOMxOf/11.h5/global_time] [ Info: Skipping [../../../../../../../tmp/jl_IOMxOf/11.h5/wall] [ Info: Skipping [../../../../../../../tmp/jl_IOMxOf/11.h5/summary] [ Info: Skipping [../../../../../../../tmp/jl_IOMxOf/11.h5/pf_active] [ Info: Skipping [../../../../../../../tmp/jl_IOMxOf/11.h5/nbi] [ Info: Skipping [../../../../../../../tmp/jl_IOMxOf/11.h5/ic_antennas] [ Info: Skipping [../../../../../../../tmp/jl_IOMxOf/11.h5/equilibrium] [ Info: Skipping [../../../../../../../tmp/jl_IOMxOf/11.h5/ec_launchers] [ Info: Skipping [../../../../../../../tmp/jl_IOMxOf/11.h5/core_transport] [ Info: Skipping [../../../../../../../tmp/jl_IOMxOf/11.h5/core_sources] [ Info: Skipping [../../../../../../../tmp/jl_IOMxOf/11.h5/core_profiles] [ Info: jl_IOMxOf/11.h5 --> [HDF5] @ /tmp/jl_IOMxOf/11.h5 ┌ Warning: h5merge: `/tmp/jl_dYLhGi/combined_test.h5` already exists. └ @ IMASdd ~/.julia/packages/IMASdd/RKUro/src/io.jl:1535 [ Info: Skipping [../../../../../../../tmp/jl_obsVnN/bb.h5/global_time] [ Info: Skipping [../../../../../../../tmp/jl_obsVnN/bb.h5/wall] [ Info: Skipping [../../../../../../../tmp/jl_obsVnN/bb.h5/summary] [ Info: Skipping [../../../../../../../tmp/jl_obsVnN/bb.h5/pf_active] [ Info: Skipping [../../../../../../../tmp/jl_obsVnN/bb.h5/nbi] [ Info: Skipping [../../../../../../../tmp/jl_obsVnN/bb.h5/ic_antennas] [ Info: Skipping [../../../../../../../tmp/jl_obsVnN/bb.h5/equilibrium] [ Info: Skipping [../../../../../../../tmp/jl_obsVnN/bb.h5/ec_launchers] [ Info: Skipping [../../../../../../../tmp/jl_obsVnN/bb.h5/core_transport] [ Info: Skipping [../../../../../../../tmp/jl_obsVnN/bb.h5/core_sources] [ Info: Skipping [../../../../../../../tmp/jl_obsVnN/bb.h5/core_profiles] [ Info: jl_obsVnN/bb.h5 --> [HDF5] @ /tmp/jl_obsVnN/bb.h5 [ Info: Skipping [../../../../../../../tmp/jl_obsVnN/aa.h5/global_time] [ Info: Skipping [../../../../../../../tmp/jl_obsVnN/aa.h5/wall] [ Info: Skipping [../../../../../../../tmp/jl_obsVnN/aa.h5/summary] [ Info: Skipping [../../../../../../../tmp/jl_obsVnN/aa.h5/pf_active] [ Info: Skipping [../../../../../../../tmp/jl_obsVnN/aa.h5/nbi] [ Info: Skipping [../../../../../../../tmp/jl_obsVnN/aa.h5/ic_antennas] [ Info: Skipping [../../../../../../../tmp/jl_obsVnN/aa.h5/equilibrium] [ Info: Skipping [../../../../../../../tmp/jl_obsVnN/aa.h5/ec_launchers] [ Info: Skipping [../../../../../../../tmp/jl_obsVnN/aa.h5/core_transport] [ Info: Skipping [../../../../../../../tmp/jl_obsVnN/aa.h5/core_sources] [ Info: Skipping [../../../../../../../tmp/jl_obsVnN/aa.h5/core_profiles] [ Info: jl_obsVnN/aa.h5 --> [HDF5] @ /tmp/jl_obsVnN/aa.h5 ┌ Warning: h5merge: `/tmp/jl_dYLhGi/combined_test.h5` already exists. └ @ IMASdd ~/.julia/packages/IMASdd/RKUro/src/io.jl:1535 [ Info: jl_IOMxOf/22.h5 --> [HDF5] @ /tmp/jl_IOMxOf/22.h5 ┌ Warning: Overwriting: [../../../../../../../tmp/jl_IOMxOf/11.h5/global_time] --> [/tmp/jl_dYLhGi/combined_test.h5/global_time] └ @ IMASdd ~/.julia/packages/IMASdd/RKUro/src/io.jl:1440 ┌ Warning: Overwriting: [../../../../../../../tmp/jl_IOMxOf/11.h5/wall] --> [/tmp/jl_dYLhGi/combined_test.h5/wall] └ @ IMASdd ~/.julia/packages/IMASdd/RKUro/src/io.jl:1440 ┌ Warning: Overwriting: [../../../../../../../tmp/jl_IOMxOf/11.h5/summary] --> [/tmp/jl_dYLhGi/combined_test.h5/summary] └ @ IMASdd ~/.julia/packages/IMASdd/RKUro/src/io.jl:1440 ┌ Warning: Overwriting: [../../../../../../../tmp/jl_IOMxOf/11.h5/pf_active] --> [/tmp/jl_dYLhGi/combined_test.h5/pf_active] └ @ IMASdd ~/.julia/packages/IMASdd/RKUro/src/io.jl:1440 ┌ Warning: Overwriting: [../../../../../../../tmp/jl_IOMxOf/11.h5/nbi] --> [/tmp/jl_dYLhGi/combined_test.h5/nbi] └ @ IMASdd ~/.julia/packages/IMASdd/RKUro/src/io.jl:1440 ┌ Warning: Overwriting: [../../../../../../../tmp/jl_IOMxOf/11.h5/ic_antennas] --> [/tmp/jl_dYLhGi/combined_test.h5/ic_antennas] └ @ IMASdd ~/.julia/packages/IMASdd/RKUro/src/io.jl:1440 ┌ Warning: Overwriting: [../../../../../../../tmp/jl_IOMxOf/11.h5/equilibrium] --> [/tmp/jl_dYLhGi/combined_test.h5/equilibrium] └ @ IMASdd ~/.julia/packages/IMASdd/RKUro/src/io.jl:1440 ┌ Warning: Overwriting: [../../../../../../../tmp/jl_IOMxOf/11.h5/ec_launchers] --> [/tmp/jl_dYLhGi/combined_test.h5/ec_launchers] └ @ IMASdd ~/.julia/packages/IMASdd/RKUro/src/io.jl:1440 ┌ Warning: Overwriting: [../../../../../../../tmp/jl_IOMxOf/11.h5/core_transport] --> [/tmp/jl_dYLhGi/combined_test.h5/core_transport] └ @ IMASdd ~/.julia/packages/IMASdd/RKUro/src/io.jl:1440 ┌ Warning: Overwriting: [../../../../../../../tmp/jl_IOMxOf/11.h5/core_sources] --> [/tmp/jl_dYLhGi/combined_test.h5/core_sources] └ @ IMASdd ~/.julia/packages/IMASdd/RKUro/src/io.jl:1440 ┌ Warning: Overwriting: [../../../../../../../tmp/jl_IOMxOf/11.h5/core_profiles] --> [/tmp/jl_dYLhGi/combined_test.h5/core_profiles] └ @ IMASdd ~/.julia/packages/IMASdd/RKUro/src/io.jl:1440 [ Info: jl_IOMxOf/11.h5 --> [HDF5] @ /tmp/jl_IOMxOf/11.h5 ┌ Warning: h5merge: `/tmp/jl_dYLhGi/combined_test.h5` already exists. └ @ IMASdd ~/.julia/packages/IMASdd/RKUro/src/io.jl:1535 ┌ Warning: Overwriting: [../../../../../../../tmp/jl_obsVnN/bb.h5/global_time] --> [/tmp/jl_dYLhGi/combined_test.h5/global_time] └ @ IMASdd ~/.julia/packages/IMASdd/RKUro/src/io.jl:1440 ┌ Warning: Overwriting: [../../../../../../../tmp/jl_obsVnN/bb.h5/wall] --> [/tmp/jl_dYLhGi/combined_test.h5/wall] └ @ IMASdd ~/.julia/packages/IMASdd/RKUro/src/io.jl:1440 ┌ Warning: Overwriting: [../../../../../../../tmp/jl_obsVnN/bb.h5/summary] --> [/tmp/jl_dYLhGi/combined_test.h5/summary] └ @ IMASdd ~/.julia/packages/IMASdd/RKUro/src/io.jl:1440 ┌ Warning: Overwriting: [../../../../../../../tmp/jl_obsVnN/bb.h5/pf_active] --> [/tmp/jl_dYLhGi/combined_test.h5/pf_active] └ @ IMASdd ~/.julia/packages/IMASdd/RKUro/src/io.jl:1440 ┌ Warning: Overwriting: [../../../../../../../tmp/jl_obsVnN/bb.h5/nbi] --> [/tmp/jl_dYLhGi/combined_test.h5/nbi] └ @ IMASdd ~/.julia/packages/IMASdd/RKUro/src/io.jl:1440 ┌ Warning: Overwriting: [../../../../../../../tmp/jl_obsVnN/bb.h5/ic_antennas] --> [/tmp/jl_dYLhGi/combined_test.h5/ic_antennas] └ @ IMASdd ~/.julia/packages/IMASdd/RKUro/src/io.jl:1440 ┌ Warning: Overwriting: [../../../../../../../tmp/jl_obsVnN/bb.h5/equilibrium] --> [/tmp/jl_dYLhGi/combined_test.h5/equilibrium] └ @ IMASdd ~/.julia/packages/IMASdd/RKUro/src/io.jl:1440 ┌ Warning: Overwriting: [../../../../../../../tmp/jl_obsVnN/bb.h5/ec_launchers] --> [/tmp/jl_dYLhGi/combined_test.h5/ec_launchers] └ @ IMASdd ~/.julia/packages/IMASdd/RKUro/src/io.jl:1440 ┌ Warning: Overwriting: [../../../../../../../tmp/jl_obsVnN/bb.h5/core_transport] --> [/tmp/jl_dYLhGi/combined_test.h5/core_transport] └ @ IMASdd ~/.julia/packages/IMASdd/RKUro/src/io.jl:1440 ┌ Warning: Overwriting: [../../../../../../../tmp/jl_obsVnN/bb.h5/core_sources] --> [/tmp/jl_dYLhGi/combined_test.h5/core_sources] └ @ IMASdd ~/.julia/packages/IMASdd/RKUro/src/io.jl:1440 ┌ Warning: Overwriting: [../../../../../../../tmp/jl_obsVnN/bb.h5/core_profiles] --> [/tmp/jl_dYLhGi/combined_test.h5/core_profiles] └ @ IMASdd ~/.julia/packages/IMASdd/RKUro/src/io.jl:1440 [ Info: jl_obsVnN/bb.h5 --> [HDF5] @ /tmp/jl_obsVnN/bb.h5 ┌ Warning: Overwriting: [../../../../../../../tmp/jl_obsVnN/aa.h5/global_time] --> [/tmp/jl_dYLhGi/combined_test.h5/global_time] └ @ IMASdd ~/.julia/packages/IMASdd/RKUro/src/io.jl:1440 ┌ Warning: Overwriting: [../../../../../../../tmp/jl_obsVnN/aa.h5/wall] --> [/tmp/jl_dYLhGi/combined_test.h5/wall] └ @ IMASdd ~/.julia/packages/IMASdd/RKUro/src/io.jl:1440 ┌ Warning: Overwriting: [../../../../../../../tmp/jl_obsVnN/aa.h5/summary] --> [/tmp/jl_dYLhGi/combined_test.h5/summary] └ @ IMASdd ~/.julia/packages/IMASdd/RKUro/src/io.jl:1440 ┌ Warning: Overwriting: [../../../../../../../tmp/jl_obsVnN/aa.h5/pf_active] --> [/tmp/jl_dYLhGi/combined_test.h5/pf_active] └ @ IMASdd ~/.julia/packages/IMASdd/RKUro/src/io.jl:1440 ┌ Warning: Overwriting: [../../../../../../../tmp/jl_obsVnN/aa.h5/nbi] --> [/tmp/jl_dYLhGi/combined_test.h5/nbi] └ @ IMASdd ~/.julia/packages/IMASdd/RKUro/src/io.jl:1440 ┌ Warning: Overwriting: [../../../../../../../tmp/jl_obsVnN/aa.h5/ic_antennas] --> [/tmp/jl_dYLhGi/combined_test.h5/ic_antennas] └ @ IMASdd ~/.julia/packages/IMASdd/RKUro/src/io.jl:1440 ┌ Warning: Overwriting: [../../../../../../../tmp/jl_obsVnN/aa.h5/equilibrium] --> [/tmp/jl_dYLhGi/combined_test.h5/equilibrium] └ @ IMASdd ~/.julia/packages/IMASdd/RKUro/src/io.jl:1440 ┌ Warning: Overwriting: [../../../../../../../tmp/jl_obsVnN/aa.h5/ec_launchers] --> [/tmp/jl_dYLhGi/combined_test.h5/ec_launchers] └ @ IMASdd ~/.julia/packages/IMASdd/RKUro/src/io.jl:1440 ┌ Warning: Overwriting: [../../../../../../../tmp/jl_obsVnN/aa.h5/core_transport] --> [/tmp/jl_dYLhGi/combined_test.h5/core_transport] └ @ IMASdd ~/.julia/packages/IMASdd/RKUro/src/io.jl:1440 ┌ Warning: Overwriting: [../../../../../../../tmp/jl_obsVnN/aa.h5/core_sources] --> [/tmp/jl_dYLhGi/combined_test.h5/core_sources] └ @ IMASdd ~/.julia/packages/IMASdd/RKUro/src/io.jl:1440 ┌ Warning: Overwriting: [../../../../../../../tmp/jl_obsVnN/aa.h5/core_profiles] --> [/tmp/jl_dYLhGi/combined_test.h5/core_profiles] └ @ IMASdd ~/.julia/packages/IMASdd/RKUro/src/io.jl:1440 [ Info: jl_obsVnN/aa.h5 --> [HDF5] @ /tmp/jl_obsVnN/aa.h5 ┌ Warning: h5merge: `/tmp/jl_dYLhGi/combined_test.h5` already exists. └ @ IMASdd ~/.julia/packages/IMASdd/RKUro/src/io.jl:1535 [ Info: jl_IOMxOf/22.h5 --> [HDF5] @ /tmp/jl_IOMxOf/22.h5 [ Info: jl_IOMxOf/11.h5 --> [HDF5] @ /tmp/jl_IOMxOf/11.h5 [ Info: jl_IOMxOf/no_attrs.h5 --> [HDF5] @ /tmp/jl_IOMxOf/no_attrs.h5 [ Info: jl_IOMxOf/test_text --> [TEXT] @ /tmp/jl_IOMxOf/test_text [ Info: jl_IOMxOf/test.txt --> [TEXT] @ /tmp/jl_IOMxOf/test.txt [ Info: jl_IOMxOf/empty.txt --> [EMPTY] @ /tmp/jl_IOMxOf/empty.txt ┌ Warning: h5merge: `/tmp/jl_dYLhGi/combined_test.h5` already exists. └ @ IMASdd ~/.julia/packages/IMASdd/RKUro/src/io.jl:1535 [ Info: jl_obsVnN/tmp_binary_file --> [BINARY] @ /tmp/jl_obsVnN/tmp_binary_file [ Info: jl_obsVnN/bb.h5 --> [HDF5] @ /tmp/jl_obsVnN/bb.h5 [ Info: jl_obsVnN/aa.h5 --> [HDF5] @ /tmp/jl_obsVnN/aa.h5 [ Info: Files containing r"\.h5" in `/tmp/jl_IOMxOf` are successfully merged into /tmp/jl_dYLhGi/combined_test.h5 [ Info: Cleaning up merged files from disk... [ Info: Base directory '/tmp/jl_IOMxOf' contains files; not removing it. [ Info: Files containing r"\.h5" in `/tmp/jl_obsVnN` are successfully merged into /tmp/jl_dYLhGi/combined_test.h5 [ Info: Cleaning up merged files from disk... [ Info: Base directory '/tmp/jl_obsVnN' contains files; not removing it. ┌ Warning: h5merge: `/tmp/jl_dYLhGi/combined_test.h5` already exists. └ @ IMASdd ~/.julia/packages/IMASdd/RKUro/src/io.jl:1535 [ Info: jl_IOMxOf/test_text --> [TEXT] @ /tmp/jl_IOMxOf/test_text [ Info: jl_IOMxOf/test.txt --> [TEXT] @ /tmp/jl_IOMxOf/test.txt [ Info: jl_IOMxOf/empty.txt --> [EMPTY] @ /tmp/jl_IOMxOf/empty.txt [ Info: All files in `/tmp/jl_IOMxOf` are successfully merged into /tmp/jl_dYLhGi/combined_test.h5 [ Info: Cleaning up merged files from disk... [ Info: Removed file: /tmp/jl_IOMxOf/test_text [ Info: Removed file: /tmp/jl_IOMxOf/test.txt [ Info: Removed file: /tmp/jl_IOMxOf/empty.txt [ Info: Base directory '/tmp/jl_IOMxOf' and all its subdirectories were empty and have been removed. ┌ Warning: h5merge: `/tmp/jl_dYLhGi/combined_test.h5` already exists. └ @ IMASdd ~/.julia/packages/IMASdd/RKUro/src/io.jl:1535 [ Info: jl_obsVnN/tmp_binary_file --> [BINARY] @ /tmp/jl_obsVnN/tmp_binary_file [ Info: All files in `/tmp/jl_obsVnN` are successfully merged into /tmp/jl_dYLhGi/combined_test.h5 [ Info: Cleaning up merged files from disk... [ Info: Removed file: /tmp/jl_obsVnN/tmp_binary_file [ Info: Base directory '/tmp/jl_obsVnN' and all its subdirectories were empty and have been removed. Test Summary: | Pass Total Time extended HDF IO | 26 26 6m59.3s ┌ Warning: Target group '/ori_dd' already exists. Overwriting it... └ @ IMASdd ~/.julia/packages/IMASdd/RKUro/src/io.jl:816 Test Summary: | Pass Total Time Test edge cases | 2 2 4m20.7s WARNING: Method definition get_expressions(Type{Base.Val{:dynamic}}) in module Main at /home/pkgeval/.julia/packages/IMASdd/RKUro/test/test_expressions_dicts.jl:1 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition get_expressions(Type{Base.Val{:onetime}}) in module Main at /home/pkgeval/.julia/packages/IMASdd/RKUro/test/test_expressions_dicts.jl:7 overwritten on the same line (check for duplicate calls to `include`). ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 181 running 1 of 2 signal (10): User defined signal 1 unknown function (ip: 0x7bec5c0eef14) at /lib/x86_64-linux-gnu/libc.so.6 pthread_cond_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv_cond_wait at /workspace/srcdir/libuv/src/unix/thread.c:822 ijl_task_get_next at /source/src/scheduler.c:520 poptask at ./task.jl:1187 wait at ./task.jl:1199 #wait#400 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:185 profile_printing_listener at ./Base.jl:333 #start_profile_listener##0 at ./Base.jl:353 jfptr_YY.start_profile_listenerYY.YY.0_59886.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 jl_apply at /source/src/julia.h:2290 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) unknown function (ip: 0x7bec5c0eee94) at /lib/x86_64-linux-gnu/libc.so.6 __pthread_rwlock_wrlock at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv_rwlock_wrlock at /workspace/srcdir/libuv/src/unix/thread.c:415 jl_profile_atomic):: > at /source/src/debuginfo.cpp:149 [inlined] registerJITObject at /source/src/debuginfo.cpp:378 jl_register_jit_object at /source/src/debuginfo.cpp:397 registerRTDyldJITObject at /source/src/jitlayers.cpp:1382 _ZN4llvm3orc24RTDyldObjectLinkingLayer9onObjLoadERNS0_29MaterializationResponsibilityERKNS_6object10ObjectFileERNS_11RuntimeDyld13MemoryManagerERNS8_16LoadedObjectInfoESt3mapINS_9StringRefENS_18JITEvaluatedSymbolESt4lessISE_ESaISt4pairIKSE_SF_EEERSt3setISE_SH_SaISE_EE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm6detail18UniqueFunctionBaseINS_5ErrorEJRKNS_6object10ObjectFileERNS_11RuntimeDyld16LoadedObjectInfoESt3mapINS_9StringRefENS_18JITEvaluatedSymbolESt4lessISB_ESaISt4pairIKSB_SC_EEEEE8CallImplIZNS_3orc24RTDyldObjectLinkingLayer4emitESt10unique_ptrINSM_29MaterializationResponsibilityESt14default_deleteISP_EESO_INS_12MemoryBufferESQ_IST_EEEUlS6_S9_SJ_E_EES2_PvS6_S9_RSJ_ at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm13jitLinkForORCENS_6object12OwningBinaryINS0_10ObjectFileEEERNS_11RuntimeDyld13MemoryManagerERNS_17JITSymbolResolverEbNS_15unique_functionIFNS_5ErrorERKS2_RNS4_16LoadedObjectInfoESt3mapINS_9StringRefENS_18JITEvaluatedSymbolESt4lessISG_ESaISt4pairIKSG_SH_EEEEEENS9_IFvS3_St10unique_ptrISD_St14default_deleteISD_EESA_EEE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm3orc24RTDyldObjectLinkingLayer4emitESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EES2_INS_12MemoryBufferES4_IS7_EE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) emit at /source/src/jitlayers.h:419 _ZN4llvm3orc35BasicObjectLayerMaterializationUnit11materializeESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm3orc19MaterializationTask3runEv at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm6detail18UniqueFunctionBaseIvJSt10unique_ptrINS_3orc4TaskESt14default_deleteIS4_EEEE8CallImplIPFvS7_EEEvPvRS7_ at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm3orc16ExecutionSession22dispatchOutstandingMUsEv at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm3orc16ExecutionSession17OL_completeLookupESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EESt10shared_ptrINS0_23AsynchronousSymbolQueryEESt8functionIFvRKNS_8DenseMapIPNS0_8JITDylibENS_8DenseSetINS0_15SymbolStringPtrENS_12DenseMapInfoISF_vEEEENSG_ISD_vEENS_6detail12DenseMapPairISD_SI_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm3orc25InProgressFullLookupState8completeESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm3orc16ExecutionSession19OL_applyQueryPhase1ESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EENS_5ErrorE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm3orc16ExecutionSession6lookupENS0_10LookupKindERKSt6vectorISt4pairIPNS0_8JITDylibENS0_19JITDylibLookupFlagsEESaIS8_EENS0_15SymbolLookupSetENS0_11SymbolStateENS_15unique_functionIFvNS_8ExpectedINS_8DenseMapINS0_15SymbolStringPtrENS0_17ExecutorSymbolDefENS_12DenseMapInfoISI_vEENS_6detail12DenseMapPairISI_SJ_EEEEEEEEESt8functionIFvRKNSH_IS6_NS_8DenseSetISI_SL_EENSK_IS6_vEENSN_IS6_SV_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm3orc16ExecutionSession6lookupERKSt6vectorISt4pairIPNS0_8JITDylibENS0_19JITDylibLookupFlagsEESaIS7_EENS0_15SymbolLookupSetENS0_10LookupKindENS0_11SymbolStateESt8functionIFvRKNS_8DenseMapIS5_NS_8DenseSetINS0_15SymbolStringPtrENS_12DenseMapInfoISI_vEEEENSJ_IS5_vEENS_6detail12DenseMapPairIS5_SL_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) findSymbols at /source/src/jitlayers.cpp:2216 jl_compile_codeinst_now at /source/src/jitlayers.cpp:666 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:946 jl_compile_method_internal at /source/src/gf.c:2985 _jl_invoke at /source/src/gf.c:3467 [inlined] ijl_apply_generic at /source/src/gf.c:3675 #coordinates#1 at /home/pkgeval/.julia/packages/IMASdd/RKUro/src/data.jl:113 coordinates at /home/pkgeval/.julia/packages/IMASdd/RKUro/src/data.jl:88 [inlined] #setproperty!#16 at /home/pkgeval/.julia/packages/IMASdd/RKUro/src/data.jl:620 setproperty! at /home/pkgeval/.julia/packages/IMASdd/RKUro/src/data.jl:617 unknown function (ip: 0x7bec2996f402) at (unknown file) _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 #dict2imas#86 at /home/pkgeval/.julia/packages/IMASdd/RKUro/src/io.jl:217 dict2imas at /home/pkgeval/.julia/packages/IMASdd/RKUro/src/io.jl:114 [inlined] #dict2imas#85 at /home/pkgeval/.julia/packages/IMASdd/RKUro/src/io.jl:103 [inlined] dict2imas at /home/pkgeval/.julia/packages/IMASdd/RKUro/src/io.jl:101 unknown function (ip: 0x7bec23db469d) at (unknown file) _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 #jstr2imas#103 at /home/pkgeval/.julia/packages/IMASdd/RKUro/src/io.jl:532 jstr2imas at /home/pkgeval/.julia/packages/IMASdd/RKUro/src/io.jl:530 [inlined] #101 at /home/pkgeval/.julia/packages/IMASdd/RKUro/src/io.jl:517 [inlined] #open#333 at ./io.jl:410 open at ./io.jl:407 [inlined] #json2imas#99 at /home/pkgeval/.julia/packages/IMASdd/RKUro/src/io.jl:516 [inlined] json2imas at /home/pkgeval/.julia/packages/IMASdd/RKUro/src/io.jl:515 [inlined] json2imas at /home/pkgeval/.julia/packages/IMASdd/RKUro/src/io.jl:515 unknown function (ip: 0x7bec23d0c2d2) at (unknown file) _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 jl_apply at /source/src/julia.h:2290 [inlined] do_call at /source/src/interpreter.c:124 eval_value at /source/src/interpreter.c:242 eval_body at /source/src/interpreter.c:580 eval_body at /source/src/interpreter.c:557 eval_body at /source/src/interpreter.c:557 jl_interpret_toplevel_thunk at /source/src/interpreter.c:897 jl_toplevel_eval_flex at /source/src/toplevel.c:1032 jl_toplevel_eval_flex at /source/src/toplevel.c:972 ijl_toplevel_eval at /source/src/toplevel.c:1044 ijl_toplevel_eval_in at /source/src/toplevel.c:1089 eval at ./boot.jl:488 include_string at ./loading.jl:2855 _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 _include at ./loading.jl:2915 include at ./Base.jl:308 IncludeInto at ./Base.jl:309 jfptr_IncludeInto_116304.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 top-level scope at /home/pkgeval/.julia/packages/IMASdd/RKUro/test/runtests.jl:21 _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_invoke at /source/src/gf.c:3482 jl_toplevel_eval_flex at /source/src/toplevel.c:1021 jl_toplevel_eval_flex at /source/src/toplevel.c:972 ijl_toplevel_eval at /source/src/toplevel.c:1044 ijl_toplevel_eval_in at /source/src/toplevel.c:1089 eval at ./boot.jl:488 include_string at ./loading.jl:2855 _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 _include at ./loading.jl:2915 include at ./Base.jl:308 IncludeInto at ./Base.jl:309 jfptr_IncludeInto_116304.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 jl_apply at /source/src/julia.h:2290 [inlined] do_call at /source/src/interpreter.c:124 eval_value at /source/src/interpreter.c:242 eval_stmt_value at /source/src/interpreter.c:193 [inlined] eval_body at /source/src/interpreter.c:692 jl_interpret_toplevel_thunk at /source/src/interpreter.c:897 jl_toplevel_eval_flex at /source/src/toplevel.c:1032 jl_toplevel_eval_flex at /source/src/toplevel.c:972 ijl_toplevel_eval at /source/src/toplevel.c:1044 ijl_toplevel_eval_in at /source/src/toplevel.c:1089 eval at ./boot.jl:488 exec_options at ./client.jl:294 _start at ./client.jl:560 jfptr__start_63968.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 jl_apply at /source/src/julia.h:2290 [inlined] true_main at /source/src/jlapi.c:964 jl_repl_entrypoint at /source/src/jlapi.c:1124 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7bec5c090249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 2 signal (10): User defined signal 1 unknown function (ip: 0x7a001a9a4f14) at /lib/x86_64-linux-gnu/libc.so.6 pthread_cond_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv_cond_wait at /workspace/srcdir/libuv/src/unix/thread.c:822 ijl_task_get_next at /source/src/scheduler.c:520 poptask at ./task.jl:1187 wait at ./task.jl:1199 #wait#400 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:185 profile_printing_listener at ./Base.jl:333 #start_profile_listener##0 at ./Base.jl:353 jfptr_YY.start_profile_listenerYY.YY.0_59886.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 jl_apply at /source/src/julia.h:2290 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 poptask at ./task.jl:1187 wait at ./task.jl:1199 #wait#400 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] wait at ./process.jl:694 wait at ./process.jl:687 jfptr_wait_79110.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 subprocess_handler at /source/usr/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2404 unknown function (ip: 0x7a0010d7dc73) at (unknown file) _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 #203 at /source/usr/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2344 withenv at ./env.jl:265 #188 at /source/usr/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2165 with_temp_env at /source/usr/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2023 #184 at /source/usr/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2132 #mktempdir#21 at ./file.jl:899 unknown function (ip: 0x7a0010d7617c) at (unknown file) _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 mktempdir at ./file.jl:895 mktempdir at ./file.jl:895 #sandbox#180 at /source/usr/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2079 [inlined] sandbox at /source/usr/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2071 unknown function (ip: 0x7a0010d69dd1) at (unknown file) _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 #test#191 at /source/usr/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2329 test at /source/usr/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2241 [inlined] #test#170 at /source/usr/share/julia/stdlib/v1.13/Pkg/src/API.jl:486 test at /source/usr/share/julia/stdlib/v1.13/Pkg/src/API.jl:465 unknown function (ip: 0x7a0010d69a01) at (unknown file) _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 #test#84 at /source/usr/share/julia/stdlib/v1.13/Pkg/src/API.jl:164 unknown function (ip: 0x7a0010d650b8) at (unknown file) _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 test at /source/usr/share/julia/stdlib/v1.13/Pkg/src/API.jl:153 #test#82 at /source/usr/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 test at /source/usr/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 [inlined] #test#81 at /source/usr/share/julia/stdlib/v1.13/Pkg/src/API.jl:151 [inlined] test at /source/usr/share/julia/stdlib/v1.13/Pkg/src/API.jl:151 unknown function (ip: 0x7a0010d5e16f) at (unknown file) _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 jl_apply at /source/src/julia.h:2290 [inlined] do_call at /source/src/interpreter.c:124 eval_value at /source/src/interpreter.c:242 eval_stmt_value at /source/src/interpreter.c:193 [inlined] eval_body at /source/src/interpreter.c:692 eval_body at /source/src/interpreter.c:557 eval_body at /source/src/interpreter.c:557 jl_interpret_toplevel_thunk at /source/src/interpreter.c:897 jl_toplevel_eval_flex at /source/src/toplevel.c:1032 jl_toplevel_eval_flex at /source/src/toplevel.c:972 ijl_toplevel_eval at /source/src/toplevel.c:1044 ijl_toplevel_eval_in at /source/src/toplevel.c:1089 eval at ./boot.jl:488 include_string at ./loading.jl:2855 _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 _include at ./loading.jl:2915 include at ./Base.jl:307 exec_options at ./client.jl:328 _start at ./client.jl:560 jfptr__start_63968.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 jl_apply at /source/src/julia.h:2290 [inlined] true_main at /source/src/jlapi.c:964 jl_repl_entrypoint at /source/src/jlapi.c:1124 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7a001a946249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (interactive) Task 0x00007a000cc00010 Total snapshots: 1. Utilization: 0% ╎1 @Base/client.jl:560 _start() ╎ 1 @Base/client.jl:328 exec_options(opts::Base.JLOptions) ╎ 1 @Base/Base.jl:307 include(mod::Module, _path::String) ╎ 1 @Base/loading.jl:2915 _include(mapexpr::Function, mod::Module, _path::S… ╎ 1 @Base/loading.jl:2855 include_string(mapexpr::typeof(identity), mod::M… ╎ 1 @Base/boot.jl:488 eval(m::Module, e::Any) ╎ ╎ 1 @Pkg/src/API.jl:151 kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(… ╎ ╎ 1 @Pkg/src/API.jl:151 #test#81 ╎ ╎ 1 @Pkg/src/API.jl:152 test ╎ ╎ 1 @Pkg/src/API.jl:152 test(pkgs::Vector{String}; kwargs::Base.Pairs… ╎ ╎ 1 @Pkg/src/API.jl:153 kwcall(::@NamedTuple{julia_args::Cmd}, ::typ… ╎ ╎ ╎ 1 @Pkg/src/API.jl:164 test(pkgs::Vector{Pkg.Types.PackageSpec}; i… ╎ ╎ ╎ 1 @Pkg/src/API.jl:465 kwcall(::@NamedTuple{julia_args::Cmd, io::… ╎ ╎ ╎ 1 @Pkg/src/API.jl:486 test(ctx::Pkg.Types.Context, pkgs::Vector… ╎ ╎ ╎ 1 @Pkg/…Operations.jl:2241 test ╎ ╎ ╎ 1 @Pkg/…perations.jl:2329 test(ctx::Pkg.Types.Context, pkgs::… ╎ ╎ ╎ ╎ 1 @Pkg/…perations.jl:2071 kwcall(::@NamedTuple{preferences::… ╎ ╎ ╎ ╎ 1 @Pkg/…perations.jl:2079 #sandbox#180 ╎ ╎ ╎ ╎ 1 @Base/file.jl:895 mktempdir(fn::Function) ╎ ╎ ╎ ╎ 1 @Base/file.jl:895 mktempdir(fn::Function, parent::Strin… ╎ ╎ ╎ ╎ 1 @Base/file.jl:899 mktempdir(fn::Pkg.Operations.var"#18… ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…rations.jl:2132 (::Pkg.Operations.var"#184#185"… ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…rations.jl:2023 with_temp_env(fn::Pkg.Operatio… ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…ations.jl:2165 (::Pkg.Operations.var"#188#189… ╎ ╎ ╎ ╎ ╎ 1 @Base/env.jl:265 withenv(::Pkg.Operations.var"#203… ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…tions.jl:2344 (::Pkg.Operations.var"#203#20… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…tions.jl:2404 subprocess_handler(cmd::Cmd,… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…cess.jl:687 wait(x::Base.Process) ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…cess.jl:694 wait(x::Base.Process, syncd… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ion.jl:136 wait ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ion.jl:141 wait(c::Base.GenericCondit… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…sk.jl:1199 wait() ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…sk.jl:1187 poptask(W::Base.Intrusiv… Thread 2 (default) Task 0x00007a000cc00100 Total snapshots: 1. Utilization: 0% ╎1 @Base/Base.jl:353 (::Base.var"#start_profile_listener##0#start_profile_lis… ╎ 1 @Base/Base.jl:333 profile_printing_listener(cond::Base.AsyncCondition) ╎ 1 @Base/asyncevent.jl:185 _trywait(t::Base.AsyncCondition) ╎ 1 @Base/condition.jl:136 wait ╎ 1 @Base/condition.jl:141 wait(c::Base.GenericCondition{Base.Threads.Spin… ╎ 1 @Base/task.jl:1199 wait() ╎ ╎ 1 @Base/task.jl:1187 poptask(W::Base.IntrusiveLinkedListSynchronized{T… [181] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/IMASdd/RKUro/test/runtests_findall.jl:7 unknown function (ip: 0x7bec5c0eef14) at /lib/x86_64-linux-gnu/libc.so.6 pthread_cond_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv_cond_wait at /workspace/srcdir/libuv/src/unix/thread.c:822 ijl_task_get_next at /source/src/scheduler.c:520 poptask at ./task.jl:1187 PkgEval terminated after 2748.5s: test duration exceeded the time limit