Package evaluation to test RegressionDynamicCausalModeling on Julia 1.12.1 (d9323c0906*) started at 2025-11-12T22:01:37.456 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 4.96s ################################################################################ # Installation # Installing RegressionDynamicCausalModeling... Resolving package versions... Installed oneTBB_jll ────────────────────── v2022.0.0+1 Installed XML2_jll ──────────────────────── v2.13.9+0 Installed libaec_jll ────────────────────── v1.1.4+0 Installed IrrationalConstants ───────────── v0.2.6 Installed Rmath ─────────────────────────── v0.9.0 Installed HypergeometricFunctions ───────── v0.3.28 Installed MPICH_jll ─────────────────────── v4.3.2+0 Installed Scratch ───────────────────────── v1.3.0 Installed Xorg_libpciaccess_jll ─────────── v0.18.1+0 Installed Hwloc_jll ─────────────────────── v2.12.2+0 Installed PtrArrays ─────────────────────── v1.3.0 Installed StatsFuns ─────────────────────── v1.5.2 Installed PDMats ────────────────────────── v0.11.36 Installed FFTW ──────────────────────────── v1.10.0 Installed SpecialFunctions ──────────────── v2.6.1 Installed DataAPI ───────────────────────── v1.16.0 Installed Preferences ───────────────────── v1.5.0 Installed MicrosoftMPI_jll ──────────────── v10.1.4+3 Installed OpenMPI_jll ───────────────────── v5.0.8+0 Installed AbstractFFTs ──────────────────── v1.5.0 Installed ProgressMeter ─────────────────── v1.11.0 Installed Libiconv_jll ──────────────────── v1.18.0+0 Installed OrderedCollections ────────────── v1.8.1 Installed RegressionDynamicCausalModeling ─ v0.2.0 Installed JLLWrappers ───────────────────── v1.7.1 Installed PrecompileTools ───────────────── v1.3.3 Installed MKL_jll ───────────────────────── v2025.2.0+0 Installed TranscodingStreams ────────────── v0.11.3 Installed MPIPreferences ────────────────── v0.1.11 Installed Reexport ──────────────────────── v1.2.2 Installed FillArrays ────────────────────── v1.15.0 Installed Rmath_jll ─────────────────────── v0.5.1+0 Installed QuadGK ────────────────────────── v2.11.2 Installed MPItrampoline_jll ─────────────── v5.5.4+0 Installed HDF5 ──────────────────────────── v0.17.2 Installed Requires ──────────────────────── v1.3.1 Installed LogExpFunctions ───────────────── v0.3.29 Installed MAT ───────────────────────────── v0.10.7 Installed Statistics ────────────────────── v1.11.1 Installed DataStructures ────────────────── v0.19.3 Installed IntelOpenMP_jll ───────────────── v2025.2.0+0 Installed BufferedStreams ───────────────── v1.2.2 Installed Distributions ─────────────────── v0.25.122 Installed FFTW_jll ──────────────────────── v3.3.11+0 Installed StatsAPI ──────────────────────── v1.7.1 Installed Compat ────────────────────────── v4.18.1 Installed AliasTables ───────────────────── v1.1.3 Installed OpenSpecFun_jll ───────────────── v0.5.6+0 Installed CodecZlib ─────────────────────── v0.7.8 Installed HDF5_jll ──────────────────────── v1.14.6+0 Installed SortingAlgorithms ─────────────── v1.2.2 Installed Missings ──────────────────────── v1.2.0 Installed DocStringExtensions ───────────── v0.9.5 Installed StatsBase ─────────────────────── v0.34.8 Installing 11 artifacts Installed artifact Xorg_libpciaccess 24.8 KiB Installed artifact Rmath 121.9 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact libaec 49.6 KiB Installed artifact Hwloc 3.5 MiB Installed artifact rDCMdata 2.2 MiB Installed artifact MPICH 3.3 MiB Installed artifact Libiconv 1.9 MiB Installed artifact FFTW 2.2 MiB Installed artifact XML2 2.5 MiB Installed artifact HDF5 5.7 MiB Updating `~/.julia/environments/v1.12/Project.toml` [4fb452e6] + RegressionDynamicCausalModeling v0.2.0 Updating `~/.julia/environments/v1.12/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [66dad0bd] + AliasTables v1.1.3 [e1450e63] + BufferedStreams v1.2.2 [944b1d66] + CodecZlib v0.7.8 [34da2185] + Compat v4.18.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.3 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [7a1cc6ca] + FFTW v1.10.0 [1a297f60] + FillArrays v1.15.0 [f67ccb44] + HDF5 v0.17.2 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.6 [692b3bcd] + JLLWrappers v1.7.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [23992714] + MAT v0.10.7 [3da0fdf6] + MPIPreferences v0.1.11 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.36 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [4fb452e6] + RegressionDynamicCausalModeling v0.2.0 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [6c6a2e73] + Scratch v1.3.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.8 [4c63d2b9] + StatsFuns v1.5.2 [3bb67fe8] + TranscodingStreams v0.11.3 [f5851436] + FFTW_jll v3.3.11+0 [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.2+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [856f044c] + MKL_jll v2025.2.0+0 [7cb0a576] + MPICH_jll v4.3.2+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.8+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0 [477f73a3] + libaec_jll v1.1.4+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.5.20 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Building RegressionDynamicCausalModeling → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/d3d84bbbd29f2ec7cbdb7f17ced50fb31046beb5/build.log` Installation completed after 13.47s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 1865.5 ms ✓ TestEnv 1 dependency successfully precompiled in 2 seconds. 26 already precompiled. Precompiling package dependencies... Precompilation completed after 236.58s ################################################################################ # Testing # Testing RegressionDynamicCausalModeling Status `/tmp/jl_WPwPPV/Project.toml` [4c88cf16] Aqua v0.8.14 ⌃ [c3a54625] JET v0.10.6 [98e50ef6] JuliaFormatter v2.2.0 [23992714] MAT v0.10.7 [4fb452e6] RegressionDynamicCausalModeling v0.2.0 [56ddb016] Logging v1.11.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_WPwPPV/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.14 [e1450e63] BufferedStreams v1.2.2 ⌅ [da1fd8a2] CodeTracking v1.3.9 [944b1d66] CodecZlib v0.7.8 [a80b9123] CommonMark v0.9.1 [34da2185] Compat v4.18.1 [807dbc54] Compiler v0.1.1 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.3 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 [7a1cc6ca] FFTW v1.10.0 [1a297f60] FillArrays v1.15.0 [c27321d9] Glob v1.3.1 [f67ccb44] HDF5 v0.17.2 [34004b35] HypergeometricFunctions v0.3.28 [92d709cd] IrrationalConstants v0.2.6 ⌃ [c3a54625] JET v0.10.6 [692b3bcd] JLLWrappers v1.7.1 [98e50ef6] JuliaFormatter v2.2.0 ⌃ [aa1ae85d] JuliaInterpreter v0.10.3 ⌅ [70703baa] JuliaSyntax v0.4.10 [2ab3a3ac] LogExpFunctions v0.3.29 ⌃ [6f1432cf] LoweredCodeUtils v3.4.2 [23992714] MAT v0.10.7 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.36 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [4fb452e6] RegressionDynamicCausalModeling v0.2.0 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [6c6a2e73] Scratch v1.3.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.6.1 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.8 [4c63d2b9] StatsFuns v1.5.2 [3bb67fe8] TranscodingStreams v0.11.3 [f5851436] FFTW_jll v3.3.11+0 [0234f1f7] HDF5_jll v1.14.6+0 [e33a78d0] Hwloc_jll v2.12.2+0 [1d5cc7b8] IntelOpenMP_jll v2025.2.0+0 [94ce4f54] Libiconv_jll v1.18.0+0 [856f044c] MKL_jll v2025.2.0+0 [7cb0a576] MPICH_jll v4.3.2+0 [f1f71cc9] MPItrampoline_jll v5.5.4+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [fe0851c0] OpenMPI_jll v5.0.8+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [a65dc6b1] Xorg_libpciaccess_jll v0.18.1+0 [477f73a3] libaec_jll v1.1.4+0 [1317d2d5] oneTBB_jll v2022.0.0+1 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+0 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Code linting: Error During Test at /home/pkgeval/.julia/packages/JET/z9poX/src/JETBase.jl:1055 Test threw exception Expression: (JET.report_package)(RegressionDynamicCausalModeling; toplevel_logger = nothing, target_defined_modules = true) Expected MethodTableView Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] invoke_mt_compiler(::Core.MethodTable, ::Symbol, ::Type, ::Vararg{Any}) @ Base ./reflection.jl:279 [3] _which(tt::Type; method_table::Core.MethodTable, world::UInt64, raise::Bool) @ Base ./reflection.jl:888 [4] _which @ ./reflection.jl:883 [inlined] [5] analyze_from_definitions!(analyzer::JET.JETAnalyzer{JET.BasicPass}, res::JET.VirtualProcessResult, config::JET.ToplevelConfig) @ JET ~/.julia/packages/JET/z9poX/src/toplevel/virtualprocess.jl:614 [6] virtual_process(x::String, filename::String, analyzer::JET.JETAnalyzer{JET.BasicPass}, config::JET.ToplevelConfig) @ JET ~/.julia/packages/JET/z9poX/src/toplevel/virtualprocess.jl:531 [7] #analyze_and_report_text!#141 @ ~/.julia/packages/JET/z9poX/src/JETBase.jl:897 [inlined] [8] analyze_and_report_file!(analyzer::JET.JETAnalyzer{JET.BasicPass}, filename::String, pkgid::Base.PkgId; jetconfigs::@Kwargs{target_defined_modules::Bool, concretization_patterns::Vector{Symbol}, analyze_from_definitions::Bool, toplevel_logger::Nothing, ignore_missing_comparison::Bool}) @ JET ~/.julia/packages/JET/z9poX/src/JETBase.jl:705 [9] analyze_and_report_package!(analyzer::JET.JETAnalyzer{JET.BasicPass}, package::Module; jetconfigs::@Kwargs{ignore_missing_comparison::Bool, toplevel_logger::Nothing, target_defined_modules::Bool}) @ JET ~/.julia/packages/JET/z9poX/src/JETBase.jl:855 [10] analyze_and_report_package! @ ~/.julia/packages/JET/z9poX/src/JETBase.jl:848 [inlined] [11] report_package(args::Module; ignore_missing_comparison::Bool, jetconfigs::@Kwargs{toplevel_logger::Nothing, target_defined_modules::Bool}) @ JET ~/.julia/packages/JET/z9poX/src/analyzers/jetanalyzer.jl:1605 [12] func_test(func::typeof(report_package), testname::Symbol, args::Any; broken::Bool, skip::Bool, jetconfigs::@Kwargs{toplevel_logger::Nothing, target_defined_modules::Bool}) @ JET ~/.julia/packages/JET/z9poX/src/JETBase.jl:1067 [13] func_test @ ~/.julia/packages/JET/z9poX/src/JETBase.jl:1052 [inlined] [14] #test_package#172 @ ~/.julia/packages/JET/z9poX/src/analyzers/jetanalyzer.jl:1632 [inlined] [15] macro expansion @ ~/.julia/packages/RegressionDynamicCausalModeling/SKQgK/test/runtests.jl:19 [inlined] [16] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [17] macro expansion @ ~/.julia/packages/RegressionDynamicCausalModeling/SKQgK/test/runtests.jl:19 [inlined] [18] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [19] top-level scope @ ~/.julia/packages/RegressionDynamicCausalModeling/SKQgK/test/runtests.jl:12 Test Summary: | Pass Error Total Time rDCM tests | 278 1 279 4m52.6s Code formatting | 1 1 12.7s Code linting | 1 1 52.9s Code quality | 9 9 35.3s Utils | 54 54 33.9s save/load DCM | 21 21 9.7s pretty print | 16 16 9.2s SPM compatibility | 17 17 4.9s Constructors | 143 143 1.9s Create HRF | 4 4 0.0s Generate synthetic data | 15 15 31.0s linear | 2 2 8.1s special cases | 4 4 17.3s bilinear | 2 2 2.4s nonlinear | 2 2 2.7s Priors | 25 25 2.5s Prior param | 10 10 0.0s Sample prior | 9 9 0.0s Rigid prior | 6 6 0.5s Create regressors | 3 3 0.8s Model inversion | 21 21 7.3s rigid rDCM | 7 7 0.8s sparse rDCM (fix C matrix) | 6 6 2.3s sparse rDCM (prune C matrix) | 6 6 2.6s Prediction | 3 3 10.8s rigid rDCM | 1 1 4.2s sparse rDCM | 1 1 6.0s error handling | 1 1 0.1s RNG of the outermost testset: Xoshiro(0xd4e838f4f75e4009, 0x10e60a15e974fabd, 0xbd36790d2e88827c, 0x13ef501050293495, 0x4535e4eacd882cbf) ERROR: LoadError: Some tests did not pass: 278 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/SKQgK/test/runtests.jl:11 Testing failed after 333.77s ERROR: LoadError: Package RegressionDynamicCausalModeling errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2427 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2280 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:484 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:306 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:317 [12] _start() @ Base ./client.jl:550 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 597.31s: package tests unexpectedly errored