Package evaluation of PhyNEST on Julia 1.13.0-DEV.786 (4d40c6480b*) started at 2025-07-04T21:00:35.174 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.61s ################################################################################ # Installation # Installing PhyNEST... Resolving package versions... Installed HarfBuzz_jll ──────────────── v8.5.1+0 Installed Cairo_jll ─────────────────── v1.18.5+0 Installed Libtiff_jll ───────────────── v4.7.1+0 Installed Libuuid_jll ───────────────── v2.41.0+0 Installed Bzip2_jll ─────────────────── v1.0.9+0 Installed InlineStrings ─────────────── v1.4.4 Installed Functors ──────────────────── v0.3.0 Installed Optim ─────────────────────── v1.13.2 Installed Xorg_libXinerama_jll ──────── v1.1.6+0 Installed Graphite2_jll ─────────────── v1.3.15+0 Installed OrderedCollections ────────── v1.8.1 Installed SentinelArrays ────────────── v1.4.8 Installed Fontconfig_jll ────────────── v2.16.0+0 Installed Wayland_protocols_jll ─────── v1.44.0+0 Installed libsass_jll ───────────────── v3.6.6+0 Installed QuadGK ────────────────────── v2.11.2 Installed FileIO ────────────────────── v1.17.0 Installed NaNMath ───────────────────── v1.1.3 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed Graphics ──────────────────── v1.1.3 Installed Librsvg_jll ───────────────── v2.54.7+0 Installed Xorg_libxcb_jll ───────────── v1.17.1+0 Installed EnumX ─────────────────────── v1.0.5 Installed Tables ────────────────────── v1.12.1 Installed LZO_jll ───────────────────── v2.10.3+0 Installed NLSolversBase ─────────────── v7.10.0 Installed Reexport ──────────────────── v1.2.2 Installed LERC_jll ──────────────────── v4.0.1+0 Installed Missings ──────────────────── v1.2.0 Installed TableTraits ───────────────── v1.0.1 Installed LLVMOpenMP_jll ────────────── v18.1.8+0 Installed LaTeXStrings ──────────────── v1.4.0 Installed Preferences ───────────────── v1.4.3 Installed Crayons ───────────────────── v4.1.1 Installed SortingAlgorithms ─────────── v1.2.1 Installed EpollShim_jll ─────────────── v0.0.20230411+1 Installed UnPack ────────────────────── v1.0.2 Installed ADTypes ───────────────────── v1.15.0 Installed MacroTools ────────────────── v0.5.16 Installed DataStructures ────────────── v0.18.22 Installed OpenSSH_jll ───────────────── v9.9.2+0 Installed DiffResults ───────────────── v1.1.0 Installed Sass ──────────────────────── v0.2.0 Installed AbstractTrees ─────────────── v0.4.5 Installed FillArrays ────────────────── v1.13.0 Installed DelimitedFiles ────────────── v1.9.1 Installed CodecZlib ─────────────────── v0.7.8 Installed Xorg_libXdamage_jll ───────── v1.1.6+0 Installed MethodAnalysis ────────────── v0.4.13 Installed Xorg_libXau_jll ───────────── v1.0.13+0 Installed Cairo ─────────────────────── v1.1.1 Installed Observables ───────────────── v0.5.5 Installed StatsBase ─────────────────── v0.33.21 Installed ArrayInterface ────────────── v7.19.0 Installed Xorg_libXfixes_jll ────────── v6.0.1+0 Installed Libffi_jll ────────────────── v3.4.7+0 Installed DataValueInterfaces ───────── v1.0.0 Installed Pixman_jll ────────────────── v0.44.2+0 Installed CommonSubexpressions ──────── v0.3.1 Installed CEnum ─────────────────────── v0.5.0 Installed Expat_jll ─────────────────── v2.6.5+0 Installed RoundingIntegers ──────────── v1.1.0 Installed libpng_jll ────────────────── v1.6.50+0 Installed IrrationalConstants ───────── v0.2.4 Installed Xorg_libXcursor_jll ───────── v1.2.4+0 Installed BitFlags ──────────────────── v0.1.9 Installed LeftChildRightSiblingTrees ── v0.2.0 Installed IOCapture ─────────────────── v0.2.5 Installed GTK4_jll ──────────────────── v4.18.6+0 Installed PooledArrays ──────────────── v1.4.3 Installed PDMats ────────────────────── v0.11.35 Installed Scratch ───────────────────── v1.3.0 Installed Setfield ──────────────────── v1.1.2 Installed WorkerUtilities ───────────── v1.6.1 Installed DocStringExtensions ───────── v0.9.5 Installed BenchmarkTools ────────────── v1.6.0 Installed FASTX ─────────────────────── v2.1.7 Installed Graphene_jll ──────────────── v1.10.8+0 Installed ForwardDiff ───────────────── v1.0.1 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed StringViews ───────────────── v1.3.4 Installed BioSequences ──────────────── v3.4.2 Installed StatsModels ───────────────── v0.6.33 Installed AliasTables ───────────────── v1.1.3 Installed adwaita_icon_theme_jll ────── v43.0.1+0 Installed DifferentiationInterface ──── v0.7.1 Installed ShiftedArrays ─────────────── v2.0.0 Installed Combinatorics ─────────────── v1.0.3 Installed MathOptInterface ──────────── v1.41.0 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed SIMD ──────────────────────── v3.7.1 Installed DataAPI ───────────────────── v1.16.0 Installed Xorg_libXi_jll ────────────── v1.8.3+0 Installed InvertedIndices ───────────── v1.3.1 Installed StaticArraysCore ──────────── v1.4.3 Installed Colors ────────────────────── v0.13.1 Installed GtkObservables ────────────── v2.2.0 Installed Wayland_jll ───────────────── v1.23.1+1 Installed Twiddle ───────────────────── v1.1.2 Installed StaticArrays ──────────────── v1.9.13 Installed Xorg_libxkbfile_jll ───────── v1.1.3+0 Installed Libglvnd_jll ──────────────── v1.7.1+1 Installed StringManipulation ────────── v0.4.1 Installed ColorTypes ────────────────── v0.12.1 Installed Xorg_xkbcomp_jll ──────────── v1.4.7+0 Installed Glib_jll ──────────────────── v2.84.3+0 Installed Requires ──────────────────── v1.3.1 Installed Documenter ────────────────── v0.27.25 Installed LogExpFunctions ───────────── v0.3.29 Installed DiffRules ─────────────────── v1.15.1 Installed Git_jll ───────────────────── v2.50.0+0 Installed JSON ──────────────────────── v0.21.4 Installed Parsers ───────────────────── v2.8.3 Installed PrettyTables ──────────────── v2.4.0 Installed Distributions ─────────────── v0.25.120 Installed FiniteDiff ────────────────── v2.27.0 Installed Rmath ─────────────────────── v0.8.0 Installed DocumenterTools ───────────── v0.1.20 Installed BioGenerics ───────────────── v0.1.5 Installed PhyloNetworks ─────────────── v0.15.3 Installed StatsFuns ─────────────────── v1.5.0 Installed Xorg_libXdmcp_jll ─────────── v1.1.6+0 Installed Xorg_xkeyboard_config_jll ─── v2.44.0+0 Installed WeakRefStrings ────────────── v1.4.2 Installed XZ_jll ────────────────────── v5.8.1+0 Installed JLLWrappers ───────────────── v1.7.0 Installed MutableArithmetics ────────── v1.6.4 Installed StructTypes ───────────────── v1.11.0 Installed DataFrames ────────────────── v1.7.0 Installed Pango_jll ─────────────────── v1.56.3+0 Installed NLopt ─────────────────────── v0.6.5 Installed Xorg_xtrans_jll ───────────── v1.6.0+0 Installed FilePathsBase ─────────────── v0.9.24 Installed JpegTurbo_jll ─────────────── v3.1.1+0 Installed Adapt ─────────────────────── v4.3.0 Installed HypergeometricFunctions ───── v0.3.28 Installed ConstructionBase ──────────── v1.6.0 Installed GLM ───────────────────────── v1.8.3 Installed Libmount_jll ──────────────── v2.41.0+0 Installed Xorg_libX11_jll ───────────── v1.8.12+0 Installed Compat ────────────────────── v4.17.0 Installed TranscodingStreams ────────── v0.11.3 Installed FlameGraphs ───────────────── v1.1.0 Installed Suppressor ────────────────── v0.2.8 Installed PositiveFactorizations ────── v0.2.4 Installed Statistics ────────────────── v1.11.1 Installed StatsAPI ──────────────────── v1.7.1 Installed Gumbo_jll ─────────────────── v0.10.2+0 Installed PrecompileTools ───────────── v1.3.2 Installed xkbcommon_jll ─────────────── v1.9.2+0 Installed GettextRuntime_jll ────────── v0.22.4+0 Installed CodecBzip2 ────────────────── v0.8.5 Installed Libepoxy_jll ──────────────── v1.5.11+0 Installed BioSymbols ────────────────── v5.2.0 Installed FriBidi_jll ───────────────── v1.0.17+0 Installed JSON3 ─────────────────────── v1.14.3 Installed Xorg_libXrender_jll ───────── v0.9.12+0 Installed PtrArrays ─────────────────── v1.3.0 Installed Parameters ────────────────── v0.12.3 Installed hicolor_icon_theme_jll ────── v0.18.0+0 Installed XML2_jll ──────────────────── v2.13.6+1 Installed ProfileView ───────────────── v1.10.1 Installed IntervalSets ──────────────── v0.7.11 Installed iso_codes_jll ─────────────── v4.17.0+0 Installed SpecialFunctions ──────────── v2.5.1 Installed Gtk4 ──────────────────────── v0.7.9 Installed PhyNEST ───────────────────── v0.1.12 Installed Git ───────────────────────── v1.4.0 Installed FreeType2_jll ─────────────── v2.13.4+0 Installed gdk_pixbuf_jll ────────────── v2.42.13+0 Installed FixedPointNumbers ─────────── v0.8.5 Installed Libiconv_jll ──────────────── v1.18.0+0 Installed LineSearches ──────────────── v7.4.0 Installed CSV ───────────────────────── v0.10.15 Installed Gumbo ─────────────────────── v0.8.3 Installed Xorg_libXrandr_jll ────────── v1.5.5+0 Installed Xorg_libXext_jll ──────────── v1.3.7+0 Installed IndirectArrays ────────────── v1.0.0 Installed Automa ────────────────────── v1.1.0 Installed NLopt_jll ─────────────────── v2.10.0+0 Installed MathProgBase ──────────────── v0.7.8 Installed ANSIColoredPrinters ───────── v0.0.1 Installing 59 artifacts Installed artifact Xorg_libXrender 435.9 KiB Installed artifact Xorg_xkbcomp 274.8 KiB Installed artifact Xorg_libXcursor 227.1 KiB Installed artifact Xorg_xtrans 48.2 KiB Installed artifact Libglvnd 833.5 KiB Installed artifact xkbcommon 263.7 KiB Installed artifact Xorg_libXfixes 195.9 KiB Installed artifact NLopt 322.7 KiB Installed artifact Pango 1.1 MiB Installed artifact Xorg_libxkbfile 486.7 KiB Installed artifact FreeType2 1.5 MiB Installed artifact Xorg_libXdmcp 67.7 KiB Installed artifact LLVMOpenMP 661.6 KiB Installed artifact Xorg_libxcb 2.1 MiB Installed artifact Libiconv 1.9 MiB Installed artifact Libmount 6.4 MiB Installed artifact Libtiff 3.2 MiB Installed artifact Expat 271.4 KiB Installed artifact Graphene 223.2 KiB Installed artifact Bzip2 503.5 KiB Installed artifact OpenSSH 4.2 MiB Installed artifact libpng 328.4 KiB Installed artifact Xorg_libXinerama 50.1 KiB Installed artifact Xorg_libXi 1.6 MiB Installed artifact Glib 7.7 MiB Installed artifact Xorg_xkeyboard_config 537.5 KiB Installed artifact Xorg_libXau 36.6 KiB Installed artifact Xorg_libXdamage 50.0 KiB Installed artifact GettextRuntime 543.0 KiB Installed artifact Rmath 121.9 KiB Installed artifact JpegTurbo 1.6 MiB Installed artifact Libffi 44.2 KiB Installed artifact hicolor_icon_theme 13.2 KiB Installed artifact LERC 272.9 KiB Installed artifact Xorg_libXrandr 354.5 KiB Installed artifact Graphite2 120.2 KiB Installed artifact GTK4 14.1 MiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact iso_codes 7.0 MiB Installed artifact Fontconfig 522.5 KiB Installed artifact adwaita_icon_theme 5.0 MiB Installed artifact libsass 8.9 MiB Installed artifact LZO 208.9 KiB Installed artifact Libepoxy 504.4 KiB Installed artifact XML2 2.5 MiB Installed artifact FriBidi 78.9 KiB Installed artifact XZ 1.5 MiB Installed artifact Wayland 443.7 KiB Installed artifact Pixman 372.2 KiB Installed artifact Xorg_libX11 13.9 MiB Installed artifact gdk_pixbuf 943.6 KiB Installed artifact Wayland_protocols 185.1 KiB Installed artifact Libuuid 3.5 MiB Installed artifact Xorg_libXext 699.9 KiB Installed artifact Gumbo 703.8 KiB Installed artifact Cairo 2.2 MiB Installed artifact HarfBuzz 1.7 MiB Installed artifact Librsvg 9.3 MiB Installed artifact Git 48.8 MiB Updating `~/.julia/environments/v1.13/Project.toml` [115de871] + PhyNEST v0.1.12 Updating `~/.julia/environments/v1.13/Manifest.toml` [47edcb42] + ADTypes v1.15.0 [a4c015fc] + ANSIColoredPrinters v0.0.1 [1520ce14] + AbstractTrees v0.4.5 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.19.0 [67c07d97] + Automa v1.1.0 [6e4b80f9] + BenchmarkTools v1.6.0 [47718e42] + BioGenerics v0.1.5 [7e6ae17a] + BioSequences v3.4.2 [3c28c6f8] + BioSymbols v5.2.0 [d1d4a3ce] + BitFlags v0.1.9 [fa961155] + CEnum v0.5.0 [336ed68f] + CSV v0.10.15 [159f3aea] + Cairo v1.1.1 [523fee87] + CodecBzip2 v0.8.5 [944b1d66] + CodecZlib v0.7.8 [3da002f7] + ColorTypes v0.12.1 [5ae59095] + Colors v0.13.1 [861a8166] + Combinatorics v1.0.3 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.17.0 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.1 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 ⌅ [e30172f5] + Documenter v0.27.25 [35a29f4d] + DocumenterTools v0.1.20 [4e289a0a] + EnumX v1.0.5 [c2308a5c] + FASTX v2.1.7 [5789e2e9] + FileIO v1.17.0 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.13.0 [6a86dc24] + FiniteDiff v2.27.0 [53c48c17] + FixedPointNumbers v0.8.5 [08572546] + FlameGraphs v1.1.0 [f6369f11] + ForwardDiff v1.0.1 ⌅ [d9f16b24] + Functors v0.3.0 ⌃ [38e38edf] + GLM v1.8.3 [d7ba0133] + Git v1.4.0 [a2bd30eb] + Graphics v1.1.3 [9db2cae5] + Gtk4 v0.7.9 [8710efd8] + GtkObservables v2.2.0 [708ec375] + Gumbo v0.8.3 [34004b35] + HypergeometricFunctions v0.3.28 [b5f81e59] + IOCapture v0.2.5 [9b13fd28] + IndirectArrays v1.0.0 [842dd82b] + InlineStrings v1.4.4 [8197267c] + IntervalSets v0.7.11 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [0f8b85d8] + JSON3 v1.14.3 [b964fa9f] + LaTeXStrings v1.4.0 [1d6d02ad] + LeftChildRightSiblingTrees v0.2.0 [d3d80556] + LineSearches v7.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [b8f27783] + MathOptInterface v1.41.0 [fdba3010] + MathProgBase v0.7.8 [85b6ec6f] + MethodAnalysis v0.4.13 [e1d29d7a] + Missings v1.2.0 [d8a4904e] + MutableArithmetics v1.6.4 [d41bc354] + NLSolversBase v7.10.0 ⌅ [76087f3c] + NLopt v0.6.5 [77ba4419] + NaNMath v1.1.3 [510215fc] + Observables v0.5.5 [429524aa] + Optim v1.13.2 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [115de871] + PhyNEST v0.1.12 ⌅ [33ad39ac] + PhyloNetworks v0.15.3 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [c46f51b8] + ProfileView v1.10.1 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [d5f540fe] + RoundingIntegers v1.1.0 [fdea26ae] + SIMD v3.7.1 [322a6be2] + Sass v0.2.0 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.8 [efcf1570] + Setfield v1.1.2 [1277b4bf] + ShiftedArrays v2.0.0 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 ⌅ [2913bbd2] + StatsBase v0.33.21 [4c63d2b9] + StatsFuns v1.5.0 ⌅ [3eaba693] + StatsModels v0.6.33 [892a3eda] + StringManipulation v0.4.1 [354b36f9] + StringViews v1.3.4 [856f2bd8] + StructTypes v1.11.0 [fd094767] + Suppressor v0.2.8 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [3bb67fe8] + TranscodingStreams v0.11.3 [7200193e] + Twiddle v1.1.2 [3a884ed6] + UnPack v1.0.2 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [6e34b625] + Bzip2_jll v1.0.9+0 [83423d85] + Cairo_jll v1.18.5+0 [2702e6a9] + EpollShim_jll v0.0.20230411+1 [2e619515] + Expat_jll v2.6.5+0 [a3f928ae] + Fontconfig_jll v2.16.0+0 [d7e528f0] + FreeType2_jll v2.13.4+0 [559328eb] + FriBidi_jll v1.0.17+0 [6ebb71f1] + GTK4_jll v4.18.6+0 [b0724c58] + GettextRuntime_jll v0.22.4+0 [f8c6e375] + Git_jll v2.50.0+0 [7746bdde] + Glib_jll v2.84.3+0 [75302f13] + Graphene_jll v1.10.8+0 [3b182d85] + Graphite2_jll v1.3.15+0 [528830af] + Gumbo_jll v0.10.2+0 [2e76f6c2] + HarfBuzz_jll v8.5.1+0 [aacddb02] + JpegTurbo_jll v3.1.1+0 [88015f11] + LERC_jll v4.0.1+0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [dd4b983a] + LZO_jll v2.10.3+0 [42c93a91] + Libepoxy_jll v1.5.11+0 [e9f186c6] + Libffi_jll v3.4.7+0 [7e76a0d4] + Libglvnd_jll v1.7.1+1 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Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 29.32s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 5729.1 ms ✓ TestEnv 1 dependency successfully precompiled in 6 seconds. 26 already precompiled. Precompiling package dependencies... 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v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Test Summary: | Pass Total Time Testing misc.function get_average | 100 100 2.5s Test Summary: | Pass Total Time Testing site pattern proabilities | 1000 1000 0.2s Testing Method-of-moment estimates of speciation times: Test Failed at /home/pkgeval/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:54 Expression: isapprox(est2, t2, atol = tol) Evaluated: isapprox(6.186529534334595, 5.5184; atol = 0.2) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:741 [inlined] [2] macro expansion @ ~/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:54 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1855 [inlined] [4] top-level scope @ ~/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:41 Testing Method-of-moment estimates of speciation times: Test Failed at /home/pkgeval/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:55 Expression: isapprox(est3, t3, atol = tol) Evaluated: isapprox(9.806925998953274, 8.909; atol = 0.2) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:741 [inlined] [2] macro expansion @ ~/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:55 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1855 [inlined] [4] top-level scope @ ~/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:41 Testing Method-of-moment estimates of speciation times: Test Failed at /home/pkgeval/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:58 Expression: isapprox(est1, t1, atol = tol) Evaluated: isapprox(1.8278761984751686, 2.2722; atol = 0.2) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:741 [inlined] [2] macro expansion @ ~/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:58 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1855 [inlined] [4] top-level scope @ ~/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:41 Testing Method-of-moment estimates of speciation times: Test Failed at /home/pkgeval/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:63 Expression: isapprox(est1, t1, atol = tol) Evaluated: isapprox(1.9476492153084206, 2.2722; atol = 0.2) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:741 [inlined] [2] macro expansion @ ~/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:63 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1855 [inlined] [4] top-level scope @ ~/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:41 Testing Method-of-moment estimates of speciation times: Test Failed at /home/pkgeval/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:64 Expression: isapprox(est2, t2, atol = tol) Evaluated: isapprox(4.689225081430228, 5.5184; atol = 0.2) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:741 [inlined] [2] macro expansion @ ~/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:64 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1855 [inlined] [4] top-level scope @ ~/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:41 Testing Method-of-moment estimates of speciation times: Test Failed at /home/pkgeval/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:68 Expression: isapprox(est1, t1, atol = tol) Evaluated: isapprox(2.493286688451533, 2.2722; atol = 0.2) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:741 [inlined] [2] macro expansion @ ~/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:68 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1855 [inlined] [4] top-level scope @ ~/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:41 Testing Method-of-moment estimates of speciation times: Test Failed at /home/pkgeval/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:69 Expression: isapprox(est2, t2, atol = tol) Evaluated: isapprox(4.968717374367583, 5.5184; atol = 0.2) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:741 [inlined] [2] macro expansion @ ~/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:69 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1855 [inlined] [4] top-level scope @ ~/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:41 Testing Method-of-moment estimates of speciation times: Test Failed at /home/pkgeval/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:70 Expression: isapprox(est3, t3, atol = tol) Evaluated: isapprox(9.327735809080878, 8.909; atol = 0.2) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:741 [inlined] [2] macro expansion @ ~/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:70 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1855 [inlined] [4] top-level scope @ ~/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:41 Testing Method-of-moment estimates of speciation times: Test Failed at /home/pkgeval/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:73 Expression: isapprox(est1, t1, atol = tol) Evaluated: isapprox(1.9010707744255468, 2.2722; atol = 0.2) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:741 [inlined] [2] macro expansion @ ~/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:73 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1855 [inlined] [4] top-level scope @ ~/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:41 Testing Method-of-moment estimates of speciation times: Test Failed at /home/pkgeval/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:74 Expression: isapprox(est2, t2, atol = tol) Evaluated: isapprox(5.308103673438735, 5.5184; atol = 0.2) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:741 [inlined] [2] macro expansion @ ~/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:74 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1855 [inlined] [4] top-level scope @ ~/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:41 Testing Method-of-moment estimates of speciation times: Test Failed at /home/pkgeval/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:75 Expression: isapprox(est3, t3, atol = tol) Evaluated: isapprox(9.114764356829507, 8.909; atol = 0.2) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:741 [inlined] [2] macro expansion @ ~/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:75 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1855 [inlined] [4] top-level scope @ ~/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:41 Test Summary: | Pass Fail Total Time Testing Method-of-moment estimates of speciation times | 1489 11 1500 7.6s RNG of the outermost testset: Random.Xoshiro(0xc25964c42e519a0c, 0xc1bc8dff92acf51f, 0x7d6dffb63d8c59ac, 0xb00cb643b2393f5f, 0x4b0e092bf9a6f55e) ERROR: LoadError: Some tests did not pass: 1489 passed, 11 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:40 in expression starting at /home/pkgeval/.julia/packages/PhyNEST/bC6xd/test/runtests.jl:11 Testing failed after 56.44s ERROR: LoadError: Package PhyNEST errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2423 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2278 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:500 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:309 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:324 [12] _start() @ Base ./client.jl:557 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 1034.19s: package has test failures