Package evaluation of MLJ on Julia 1.13.0-DEV.791 (d5209bd37d*) started at 2025-07-04T18:46:14.859 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.08s ################################################################################ # Installation # Installing MLJ... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [add582a8] + MLJ v0.20.8 Updating `~/.julia/environments/v1.13/Manifest.toml` [da404889] + ARFFFiles v1.5.0 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 [a9b6321e] + Atomix v1.1.1 [198e06fe] + BangBang v0.4.4 [9718e550] + Baselet v0.1.1 [d1d4a3ce] + BitFlags v0.1.9 [324d7699] + CategoricalArrays v0.10.8 [af321ab8] + CategoricalDistributions v0.1.15 [d360d2e6] + ChainRulesCore v1.25.2 [944b1d66] + CodecZlib v0.7.8 [3da002f7] + ColorTypes v0.12.1 [861a8166] + Combinatorics v1.0.3 [34da2185] + Compat v4.17.0 [a33af91c] + CompositionsBase v0.1.2 [ed09eef8] + ComputationalResources v0.3.2 [f0e56b4a] + ConcurrentUtilities v2.5.0 [187b0558] + ConstructionBase v1.6.0 [6add18c4] + ContextVariablesX v0.1.3 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [244e2a9f] + DefineSingletons v0.1.2 [8bb1440f] + DelimitedFiles v1.9.1 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [792122b4] + EarlyStopping v0.3.0 [460bff9d] + ExceptionUnwrapping v0.1.11 [cc61a311] + FLoops v0.2.2 [b9860ae5] + FLoopsBase v0.1.1 [33837fe5] + FeatureSelection v0.2.2 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.13.0 [53c48c17] + FixedPointNumbers v0.8.5 [46192b85] + GPUArraysCore v0.2.0 [cd3eb016] + HTTP v1.10.17 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [22cec73e] + InitialValues v0.3.1 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [b3c1a2ee] + IterationControl v0.5.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [b14d175d] + JuliaVariables v0.2.4 [63c18a36] + KernelAbstractions v0.9.36 [b964fa9f] + LaTeXStrings v1.4.0 [a5e1c1ea] + LatinHypercubeSampling v1.9.0 [92ad9a40] + LearnAPI v1.0.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.1.0 [c2834f40] + MLCore v1.0.0 ⌅ [64a0f543] + MLFlowClient v0.5.1 [add582a8] + MLJ v0.20.8 [45f359ea] + MLJBalancing v0.1.5 [a7f614a8] + MLJBase v1.8.1 [50ed68f4] + MLJEnsembles v0.4.3 [7b7b8358] + MLJFlow v0.5.0 [614be32b] + MLJIteration v0.6.3 [e80e1ace] + MLJModelInterface v1.11.1 [d491faf4] + MLJModels v0.17.9 [03970b2e] + MLJTuning v0.8.8 [d8e11817] + MLStyle v0.4.17 [f1d291b0] + MLUtils v0.4.8 [1914dd2f] + MacroTools v0.5.16 [739be429] + MbedTLS v1.1.9 [128add7d] + MicroCollections v0.2.0 [e1d29d7a] + Missings v1.2.0 [872c559c] + NNlib v0.9.30 [71a1bf82] + NameResolution v0.1.5 [8b6db2d4] + OpenML v0.3.2 [4d8831e6] + OpenSSL v1.5.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [8162dcfd] + PrettyPrint v0.2.0 [54e16d92] + PrettyPrinting v0.4.2 [08abe8d2] + PrettyTables v2.4.0 [92933f4c] + ProgressMeter v1.10.4 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [05181044] + RelocatableFolders v1.0.1 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [321657f4] + ScientificTypes v3.1.0 [30f210dd] + ScientificTypesBase v3.0.0 [7e506255] + ScopedValues v1.3.0 [6c6a2e73] + Scratch v1.3.0 [efcf1570] + Setfield v1.1.2 [605ecd9f] + ShowCases v0.1.0 [777ac1f9] + SimpleBufferStream v1.2.0 [699a6c99] + SimpleTraits v0.9.4 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [171d559e] + SplittablesBase v0.1.15 [860ef19b] + StableRNGs v1.0.3 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [a19d573c] + StatisticalMeasures v0.2.1 [c062fc1d] + StatisticalMeasuresBase v0.1.2 [64bff920] + StatisticalTraits v3.4.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [4c63d2b9] + StatsFuns v1.5.0 [892a3eda] + StringManipulation v0.4.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [3bb67fe8] + TranscodingStreams v0.11.3 [28d57a85] + Transducers v0.4.84 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [013be700] + UnsafeAtomics v0.3.0 [c8ffd9c3] + MbedTLS_jll v2.28.6+2 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.14.1+1 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.5.20 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.5.0+0 [efcefdf7] + PCRE2_jll v10.45.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.37s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... ERROR: LoadError: The following 4 direct dependencies failed to precompile: BetaML Failed to precompile BetaML [024491cd-cc6b-443e-8034-08ea7eb7db2b] to "/home/pkgeval/.julia/compiled/v1.13/BetaML/jl_eFF2TA" (ProcessExited(1)). [ Info: Beginning BetaML PrecompileTool workflow.... ERROR: LoadError: MethodError: objects of type Module are not callable. In case you did not try calling it explicitly, check if a Module has been passed as an argument to a method that expects a callable instead. The object of type `Module` exists, but no method is defined for this combination of argument types when trying to treat it as a callable object. Stacktrace: [1] backward(layer::BetaML.Nn.VectorFunctionLayer{0, typeof(BetaML.Utils.softmax), typeof(BetaML.Utils.dsoftmax), Nothing, Float64}, x::Vector{Float64}, next_gradient::Vector{Float64}) @ BetaML.Nn ~/.julia/packages/BetaML/3Lb3h/src/Nn/default_layers/VectorFunctionLayer.jl:102 [2] get_gradient(nn::BetaML.Nn.NN, x::Vector{Float64}, y::Vector{Bool}) @ BetaML.Nn ~/.julia/packages/BetaML/3Lb3h/src/Nn/Nn.jl:493 [3] get_batchgradient(nn::BetaML.Nn.NN, xbatch::Matrix{Float64}, ybatch::Matrix{Bool}) @ BetaML.Nn ~/.julia/packages/BetaML/3Lb3h/src/Nn/Nn.jl:530 [4] macro expansion @ ~/.julia/packages/BetaML/3Lb3h/src/Nn/Nn.jl:718 [inlined] [5] macro expansion @ ~/.julia/packages/ProgressMeter/kniaW/src/ProgressMeter.jl:1021 [inlined] [6] train!(nn::BetaML.Nn.NN, x::Matrix{Float64}, y::Matrix{Bool}; epochs::Int64, batch_size::Int64, sequential::Bool, nepochs_ran::Int64, verbosity::BetaML.Api.Verbosity, cb::typeof(BetaML.Nn.fitting_info), onfail::String, fail_epoch::Int64, fail_threshold::Float64, opt_alg::BetaML.Nn.ADAM, rng::Random.TaskLocalRNG) @ BetaML.Nn ~/.julia/packages/BetaML/3Lb3h/src/Nn/Nn.jl:703 [7] fit!(m::BetaML.Nn.NeuralNetworkEstimator, X::Matrix{Float64}, Y::Matrix{Bool}) @ BetaML.Nn ~/.julia/packages/BetaML/3Lb3h/src/Nn/Nn.jl:1174 [8] macro expansion @ ~/.julia/packages/BetaML/3Lb3h/src/Precompilation.jl:13 [inlined] [9] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined] [10] macro expansion @ ~/.julia/packages/BetaML/3Lb3h/src/Precompilation.jl:7 [inlined] [11] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:121 [inlined] [12] top-level scope @ ~/.julia/packages/BetaML/3Lb3h/src/Precompilation.jl:118 [13] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [14] top-level scope @ ~/.julia/packages/BetaML/3Lb3h/src/BetaML.jl:78 [15] include(mod::Module, _path::String) @ Base ./Base.jl:309 [16] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3000 [17] top-level scope @ stdin:5 [18] eval(m::Module, e::Any) @ Core ./boot.jl:489 [19] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [20] include_string @ ./loading.jl:2856 [inlined] [21] exec_options(opts::Base.JLOptions) @ Base ./client.jl:322 [22] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/BetaML/3Lb3h/src/Precompilation.jl:1 in expression starting at /home/pkgeval/.julia/packages/BetaML/3Lb3h/src/BetaML.jl:1 in expression starting at stdin:5 MLJLinearModels Failed to precompile MLJLinearModels [6ee0df7b-362f-4a72-a706-9e79364fb692] to "/home/pkgeval/.julia/compiled/v1.13/MLJLinearModels/jl_8nv7Jw" (ProcessExited(1)). ERROR: LoadError: syntax: misplaced "global" declaration Stacktrace: [1] top-level scope @ ~/.julia/packages/Optim/HvjCd/src/Optim.jl:223 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3000 [4] top-level scope @ stdin:5 [5] eval(m::Module, e::Any) @ Core ./boot.jl:489 [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [7] include_string @ ./loading.jl:2856 [inlined] [8] exec_options(opts::Base.JLOptions) @ Base ./client.jl:322 [9] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/Optim/HvjCd/src/Optim.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile Optim [429524aa-4258-5aef-a3af-852621145aeb] to "/home/pkgeval/.julia/compiled/v1.13/Optim/jl_fNsWV1" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3287 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2652 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [7] #invokelatest_gr#232 @ ./reflection.jl:1282 [inlined] [8] invokelatest_gr @ ./reflection.jl:1274 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3858 [10] maybe_cachefile_lock @ ./loading.jl:3855 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2638 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2466 [13] macro expansion @ ./loading.jl:2394 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2359 [16] require @ ./loading.jl:2335 [inlined] [17] eval_import_path @ ./module.jl:36 [inlined] [18] _eval_import(imported::Bool, to::Module, from::Nothing, paths::Expr) @ Base ./module.jl:111 [19] top-level scope @ ~/.julia/packages/MLJLinearModels/s9vSj/src/MLJLinearModels.jl:7 [20] include(mod::Module, _path::String) @ Base ./Base.jl:309 [21] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3000 [22] top-level scope @ stdin:5 [23] eval(m::Module, e::Any) @ Core ./boot.jl:489 [24] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [25] include_string @ ./loading.jl:2856 [inlined] [26] exec_options(opts::Base.JLOptions) @ Base ./client.jl:322 [27] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/MLJLinearModels/s9vSj/src/MLJLinearModels.jl:1 in expression starting at stdin:5 SymbolicRegression Failed to precompile SymbolicRegression [8254be44-1295-4e6a-a16d-46603ac705cb] to "/home/pkgeval/.julia/compiled/v1.13/SymbolicRegression/jl_lHOXjj" (ProcessExited(1)). ERROR: LoadError: syntax: misplaced "global" declaration Stacktrace: [1] top-level scope @ ~/.julia/packages/Optim/HvjCd/src/Optim.jl:223 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3000 [4] top-level scope @ stdin:5 [5] eval(m::Module, e::Any) @ Core ./boot.jl:489 [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [7] include_string @ ./loading.jl:2856 [inlined] [8] exec_options(opts::Base.JLOptions) @ Base ./client.jl:322 [9] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/Optim/HvjCd/src/Optim.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile Optim [429524aa-4258-5aef-a3af-852621145aeb] to "/home/pkgeval/.julia/compiled/v1.13/Optim/jl_Qx00VD" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3287 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2652 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [7] #invokelatest_gr#232 @ ./reflection.jl:1282 [inlined] [8] invokelatest_gr @ ./reflection.jl:1274 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3858 [10] maybe_cachefile_lock @ ./loading.jl:3855 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2638 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2466 [13] macro expansion @ ./loading.jl:2394 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2359 [16] require @ ./loading.jl:2335 [inlined] [17] eval_import_path @ ./module.jl:36 [inlined] [18] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [19] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr}) @ Base ./module.jl:101 [20] top-level scope @ ~/.julia/packages/SymbolicRegression/5p5kQ/src/OptionsStruct.jl:4 [21] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [22] top-level scope @ ~/.julia/packages/SymbolicRegression/5p5kQ/src/Core.jl:9 [23] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [24] top-level scope @ ~/.julia/packages/SymbolicRegression/5p5kQ/src/SymbolicRegression.jl:208 [25] include(mod::Module, _path::String) @ Base ./Base.jl:309 [26] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3000 [27] top-level scope @ stdin:5 [28] eval(m::Module, e::Any) @ Core ./boot.jl:489 [29] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [30] include_string @ ./loading.jl:2856 [inlined] [31] exec_options(opts::Base.JLOptions) @ Base ./client.jl:322 [32] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/SymbolicRegression/5p5kQ/src/OptionsStruct.jl:1 in expression starting at /home/pkgeval/.julia/packages/SymbolicRegression/5p5kQ/src/Core.jl:1 in expression starting at /home/pkgeval/.julia/packages/SymbolicRegression/5p5kQ/src/SymbolicRegression.jl:1 in expression starting at stdin:5 SymbolicRegressionJSON3Ext Failed to precompile SymbolicRegressionJSON3Ext [29d21a5d-9107-5b50-898d-2a35d56a4458] to "/home/pkgeval/.julia/compiled/v1.13/SymbolicRegressionJSON3Ext/jl_bDn9E2" (ProcessExited(1)). ERROR: LoadError: syntax: misplaced "global" declaration Stacktrace: [1] top-level scope @ ~/.julia/packages/Optim/HvjCd/src/Optim.jl:223 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3000 [4] top-level scope @ stdin:5 [5] eval(m::Module, e::Any) @ Core ./boot.jl:489 [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [7] include_string @ ./loading.jl:2856 [inlined] [8] exec_options(opts::Base.JLOptions) @ Base ./client.jl:322 [9] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/Optim/HvjCd/src/Optim.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile Optim [429524aa-4258-5aef-a3af-852621145aeb] to "/home/pkgeval/.julia/compiled/v1.13/Optim/jl_pr3QgH" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3287 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2652 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [7] #invokelatest_gr#232 @ ./reflection.jl:1282 [inlined] [8] invokelatest_gr @ ./reflection.jl:1274 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3858 [10] maybe_cachefile_lock @ ./loading.jl:3855 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2638 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2466 [13] macro expansion @ ./loading.jl:2394 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2359 [16] require @ ./loading.jl:2335 [inlined] [17] eval_import_path @ ./module.jl:36 [inlined] [18] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [19] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr}) @ Base ./module.jl:101 [20] top-level scope @ ~/.julia/packages/SymbolicRegression/5p5kQ/src/OptionsStruct.jl:4 [21] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [22] top-level scope @ ~/.julia/packages/SymbolicRegression/5p5kQ/src/Core.jl:9 [23] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [24] top-level scope @ ~/.julia/packages/SymbolicRegression/5p5kQ/src/SymbolicRegression.jl:208 [25] include(mod::Module, _path::String) @ Base ./Base.jl:309 [26] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3000 [27] top-level scope @ stdin:5 [28] eval(m::Module, e::Any) @ Core ./boot.jl:489 [29] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [30] include_string @ ./loading.jl:2856 [inlined] [31] exec_options(opts::Base.JLOptions) @ Base ./client.jl:322 [32] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/SymbolicRegression/5p5kQ/src/OptionsStruct.jl:1 in expression starting at /home/pkgeval/.julia/packages/SymbolicRegression/5p5kQ/src/Core.jl:1 in expression starting at /home/pkgeval/.julia/packages/SymbolicRegression/5p5kQ/src/SymbolicRegression.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile SymbolicRegression [8254be44-1295-4e6a-a16d-46603ac705cb] to "/home/pkgeval/.julia/compiled/v1.13/SymbolicRegression/jl_yNASkm" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3287 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2652 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [7] #invokelatest_gr#232 @ ./reflection.jl:1282 [inlined] [8] invokelatest_gr @ ./reflection.jl:1274 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3858 [10] maybe_cachefile_lock @ ./loading.jl:3855 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2638 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2466 [13] macro expansion @ ./loading.jl:2394 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2359 [16] require @ ./loading.jl:2335 [inlined] [17] eval_import_path @ ./module.jl:36 [inlined] [18] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [19] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr}) @ Base ./module.jl:101 [20] top-level scope @ ~/.julia/packages/SymbolicRegression/5p5kQ/ext/SymbolicRegressionJSON3Ext.jl:4 [21] include(mod::Module, _path::String) @ Base ./Base.jl:309 [22] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3000 [23] top-level scope @ stdin:5 [24] eval(m::Module, e::Any) @ Core ./boot.jl:489 [25] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [26] include_string @ ./loading.jl:2856 [inlined] [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:322 [28] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/SymbolicRegression/5p5kQ/ext/SymbolicRegressionJSON3Ext.jl:1 in expression starting at stdin:5 in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 1649.93s ################################################################################ # Testing # Testing MLJ Status `/tmp/jl_DfuyWV/Project.toml` [024491cd] BetaML v0.12.2 [e2e10f9a] CatBoost v0.3.6 [324d7699] CategoricalArrays v0.10.8 [ed09eef8] ComputationalResources v0.3.2 [31c24e10] Distributions v0.25.120 [ab853011] EvoLinear v0.4.3 [f6006082] EvoTrees v0.17.3 [33837fe5] FeatureSelection v0.2.2 [c709b415] Imbalance v0.1.6 [c52c1a26] LaplaceRedux v1.2.0 [7acf609c] LightGBM v2.0.0 [add582a8] MLJ v0.20.8 [45f359ea] MLJBalancing v0.1.5 [a7f614a8] MLJBase v1.8.1 [d354fa79] MLJClusteringInterface v0.1.13 [c6f25543] MLJDecisionTreeInterface v0.4.2 [50ed68f4] MLJEnsembles v0.4.3 [7b7b8358] MLJFlow v0.5.0 [094fc8d1] MLJFlux v0.6.6 [caf8df21] MLJGLMInterface v0.3.7 [614be32b] MLJIteration v0.6.3 [61c7150f] MLJLIBSVMInterface v0.2.1 [6ee0df7b] MLJLinearModels v0.10.1 [d491faf4] MLJModels v0.17.9 [1b6a4a23] MLJMultivariateStatsInterface v0.5.3 [33e4bacb] MLJNaiveBayesInterface v0.1.6 [5ae90465] MLJScikitLearnInterface v0.7.0 [7fa162e1] MLJTSVDInterface v0.1.6 [697918b4] MLJTestIntegration v0.5.2 [72560011] MLJTestInterface v0.2.8 [5e27fcf9] MLJText v0.2.3 [03970b2e] MLJTuning v0.8.8 [54119dfa] MLJXGBoostInterface v0.3.12 [81f79f80] Maxnet v0.1.4 [636a865e] NearestNeighborModels v0.2.3 [90484964] OneRule v0.5.1 [8b6db2d4] OpenML v0.3.2 [51249a0a] OutlierDetectionNeighbors v0.1.5 [2449c660] OutlierDetectionPython v0.2.4 [42b8e9d4] ParallelKMeans v1.1.0 [19f41c5e] PartitionedLS v1.0.11 [92933f4c] ProgressMeter v1.10.4 [189a3867] Reexport v1.2.2 [cdeec39e] SIRUS v2.0.1 [321657f4] ScientificTypes v3.1.0 [ba4b7379] SelfOrganizingMaps v0.1.2 [860ef19b] StableRNGs v1.0.3 [a19d573c] StatisticalMeasures v0.2.1 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.5 [fd094767] Suppressor v0.2.8 ⌃ [8254be44] SymbolicRegression v1.9.0 [bd369af6] Tables v1.12.1 [8ba89e20] Distributed v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [d6f4376e] Markdown v1.11.0 [44cfe95a] Pkg v1.13.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_DfuyWV/Manifest.toml` Precompiling packages... 7126.8 ms ✓ CUDA_Runtime_jll 1 dependency successfully precompiled in 8 seconds. 30 already precompiled. 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Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Test Summary: | Pass Total Time version | 2 2 2.6s Test Summary: | Pass Total Time exported_names | 5 5 1.3s Test Summary: | Pass Total Time scitypes | 5 5 0.1s ┌ Info: Integration tests skipped. Set environment variable MLJ_TEST_INTEGRATION = "true" to include them. └ Integration tests take at least one hour. Testing MLJ tests passed Testing completed after 177.81s PkgEval succeeded after 1895.59s