Package evaluation of CryoGrid on Julia 1.13.0-DEV.791 (d5209bd37d*) started at 2025-07-04T19:36:09.903 ################################################################################ # Set-up # Set-up completed after 0.21s ################################################################################ # Installation # Installing CryoGrid... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [a535b82e] + CryoGrid v0.23.2 Updating `~/.julia/environments/v1.13/Manifest.toml` [47edcb42] + ADTypes v1.15.0 [85c772de] + AbstractNumbers v0.2.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [4fba245c] + ArrayInterface v7.19.0 [4c555306] + ArrayLayouts v1.11.1 [13072b0f] + AxisAlgorithms v1.1.0 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [70df07ce] + BracketingNonlinearSolve v1.3.0 ⌅ [179af706] + CFTime v0.1.4 [2a0fbf3d] + CPUSummary v0.2.6 [d360d2e6] + ChainRulesCore v1.25.2 [fb6a15b2] + CloseOpenIntervals v0.1.13 [1fbeeb36] + CommonDataModel v0.3.8 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.17.0 [b0b7db55] + ComponentArrays v0.15.28 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.6.0 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [a535b82e] + CryoGrid v0.23.2 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 ⌃ [2b5f629d] + DiffEqBase v6.174.0 [459566f4] + DiffEqCallbacks v4.8.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 ⌅ [a0c0ee7d] + DifferentiationInterface v0.6.54 ⌅ [0703355e] + DimensionalData v0.28.5 [3c3547ce] + DiskArrays v0.4.13 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 [f151be2c] + EnzymeCore v0.8.12 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [411431e0] + Extents v0.1.6 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [29a986be] + FastLapackInterface v2.0.4 [a4df4552] + FastPower v1.1.3 [bf96fef3] + FieldMetadata v0.3.1 [1a297f60] + FillArrays v1.13.0 [6a86dc24] + FiniteDiff v2.27.0 [4c728ea3] + Flatten v0.4.3 ⌅ [f6369f11] + ForwardDiff v0.10.38 [71e4ad71] + FreezeCurves v0.9.3 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [d9f16b24] + Functors v0.5.2 [46192b85] + GPUArraysCore v0.2.0 [3e5b6fbb] + HostCPUFeatures v0.1.17 [615f187c] + IfElse v0.1.1 [85a1e053] + Interfaces v0.3.2 ⌅ [a98d9a8b] + Interpolations v0.15.1 [8197267c] + IntervalSets v0.7.11 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [0f8b85d8] + JSON3 v1.14.3 [ae98c720] + Jieko v0.2.1 [ef3ab10e] + KLU v0.6.0 ⌅ [ba0b0d4f] + Krylov v0.9.10 [8ac3fa9e] + LRUCache v1.6.2 [b964fa9f] + LaTeXStrings v1.4.0 [10f19ff3] + LayoutPointers v0.1.17 [5078a376] + LazyArrays v2.6.1 [87fe0de2] + LineSearch v0.1.4 [d3d80556] + LineSearches v7.4.0 ⌅ [7ed4a6bd] + LinearSolve v2.39.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [bdcacae8] + LoopVectorization v0.12.172 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [bb5d69b7] + MaybeInplace v0.1.4 [4744a3fa] + ModelParameters v0.4.5 [2e0e35c7] + Moshi v0.3.6 [46d2c3a1] + MuladdMacro v0.2.4 [85f8d34a] + NCDatasets v0.14.8 [d41bc354] + NLSolversBase v7.10.0 [2774e3e8] + NLsolve v4.5.1 [77ba4419] + NaNMath v1.1.3 [8913a72c] + NonlinearSolve v4.9.0 ⌃ [be0214bd] + NonlinearSolveBase v1.5.2 [5959db7a] + NonlinearSolveFirstOrder v1.5.0 ⌃ [9a2c21bd] + NonlinearSolveQuasiNewton v1.2.1 [26075421] + NonlinearSolveSpectralMethods v1.2.0 [6fe1bfb0] + OffsetArrays v1.17.0 [bac558e1] + OrderedCollections v1.8.1 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [f517fe37] + Polyester v0.7.18 [1d0040c9] + PolyesterWeave v0.2.2 [d236fae5] + PreallocationTools v0.4.27 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [c84ed2f1] + Ratios v0.4.5 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.34.1 [f2c3362d] + RecursiveFactorization v0.2.23 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [37e2e3b7] + ReverseDiff v1.16.1 [7e49a35a] + RuntimeGeneratedFunctions v0.5.15 [94e857df] + SIMDTypes v0.1.0 [476501e8] + SLEEFPirates v0.6.43 ⌅ [0bca4576] + SciMLBase v2.77.2 ⌃ [19f34311] + SciMLJacobianOperators v0.1.2 ⌅ [c0aeaf25] + SciMLOperators v0.3.12 [53ae85a6] + SciMLStructures v1.7.0 [efcf1570] + Setfield v1.1.2 [727e6d20] + SimpleNonlinearSolve v2.5.0 [0a514795] + SparseMatrixColorings v0.4.21 [e56a9233] + Sparspak v0.3.12 [276daf66] + SpecialFunctions v2.5.1 [aedffcd0] + Static v1.2.0 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [7792a7ef] + StrideArraysCore v0.5.7 [892a3eda] + StringManipulation v0.4.1 [856f2bd8] + StructTypes v1.11.0 [2efcf032] + SymbolicIndexingInterface v0.3.41 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [8290d209] + ThreadingUtilities v0.5.5 [9e3dc215] + TimeSeries v0.24.2 [a759f4b9] + TimerOutputs v0.5.29 [d5829a12] + TriangularSolve v0.2.1 [781d530d] + TruncatedStacktraces v1.4.0 [3a884ed6] + UnPack v1.0.2 [1986cc42] + Unitful v1.23.1 [3d5dd08c] + VectorizationBase v0.21.71 [efce3f68] + WoodburyMatrices v1.0.0 [0b7ba130] + Blosc_jll v1.21.7+0 [6e34b625] + Bzip2_jll v1.0.9+0 [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.1+0 [1d5cc7b8] + IntelOpenMP_jll v2025.0.4+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [5ced341a] + Lz4_jll v1.10.1+0 [856f044c] + MKL_jll v2025.0.1+1 [7cb0a576] + MPICH_jll v4.3.1+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [7243133f] + NetCDF_jll v401.900.300+0 [fe0851c0] + OpenMPI_jll v5.0.8+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 ⌅ [02c8fc9c] + XML2_jll v2.13.6+1 [ffd25f8a] + XZ_jll v5.8.1+0 [477f73a3] + libaec_jll v1.1.3+0 [337d8026] + libzip_jll v1.11.3+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.14.1+1 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.5.20 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.5.0+0 [efcefdf7] + PCRE2_jll v10.45.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 13.6s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml` No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml` Precompiling package dependencies... Precompiling packages... ✗ LazyArrays ✗ DimensionalData 41055.5 ms ✓ ComponentArrays → ComponentArraysSciMLBaseExt 66122.4 ms ✓ NonlinearSolveBase 66512.7 ms ✓ PreallocationTools → PreallocationToolsReverseDiffExt 60183.4 ms ✓ ComponentArrays → ComponentArraysReverseDiffExt 35428.1 ms ✓ FreezeCurves 7111.1 ms ✓ DiffEqBase → DiffEqBaseUnitfulExt 20767.0 ms ✓ DiffEqBase → DiffEqBaseReverseDiffExt 75980.5 ms ✓ DiffEqCallbacks ✗ LazyArrays → LazyArraysStaticArraysExt ✗ LinearSolve 37105.9 ms ✓ NonlinearSolveBase → NonlinearSolveBaseDiffEqBaseExt 5268.0 ms ✓ NonlinearSolveBase → NonlinearSolveBaseSparseMatrixColoringsExt 4982.3 ms ✓ NonlinearSolveBase → NonlinearSolveBaseSparseArraysExt 10774.5 ms ✓ BracketingNonlinearSolve 27770.8 ms ✓ NonlinearSolveBase → NonlinearSolveBaseLineSearchExt 71095.1 ms ✓ NonlinearSolveBase → NonlinearSolveBaseForwardDiffExt ✗ LinearSolve → LinearSolveRecursiveArrayToolsExt ✗ LinearSolve → LinearSolveEnzymeExt ✗ NonlinearSolveBase → NonlinearSolveBaseLinearSolveExt 17331.3 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveForwardDiffExt 50874.6 ms ✓ NonlinearSolveSpectralMethods ✗ NonlinearSolveFirstOrder ✗ NonlinearSolveQuasiNewton 30927.7 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveChainRulesCoreExt 80348.8 ms ✓ SimpleNonlinearSolve 35242.5 ms ✓ NonlinearSolveSpectralMethods → NonlinearSolveSpectralMethodsForwardDiffExt ✗ NonlinearSolveQuasiNewton → NonlinearSolveQuasiNewtonForwardDiffExt 68681.4 ms ✓ SimpleNonlinearSolve → SimpleNonlinearSolveReverseDiffExt 5982.2 ms ✓ SimpleNonlinearSolve → SimpleNonlinearSolveChainRulesCoreExt 6582.9 ms ✓ SimpleNonlinearSolve → SimpleNonlinearSolveDiffEqBaseExt ✗ NonlinearSolve ✗ NonlinearSolve → NonlinearSolveNLsolveExt ✗ CryoGrid 22 dependencies successfully precompiled in 1593 seconds. 264 already precompiled. ERROR: LoadError: The following 1 direct dependency failed to precompile: CryoGrid Failed to precompile CryoGrid [a535b82e-5f3d-4d97-8b0b-d6483f5bebd5] to "/home/pkgeval/.julia/compiled/v1.13/CryoGrid/jl_SfNgOx" (ProcessExited(1)). ERROR: LoadError: UndefVarError: `X` not defined in `DimensionalData.Dimensions` Suggestion: define the const at top-level before running function that uses it (stricter Julia v1.12+ rule). Note: the binding state changed since the error occurred (was: 11, now: 0). Hint: a global variable of this name also exists in DimensionalData.Dimensions. - Also exported by DimensionalData (loaded but not imported in Main). Stacktrace: [1] #s82#99 @ ~/.julia/packages/DimensionalData/iHSqC/src/Lookups/utils.jl:78 [inlined] [2] var"#s82#99"(T::Any, ::Any, ::Any) @ DimensionalData.Dimensions.Lookups ./none:0 [3] (::Core.GeneratedFunctionStub)(::UInt64, ::Method, ::Any, ::Vararg{Any}) @ Base ./expr.jl:1811 [4] basetypeof @ ~/.julia/packages/DimensionalData/iHSqC/src/Lookups/utils.jl:73 [inlined] [5] _format(dim::DimensionalData.Dimensions.X{Vector{Symbol}}, axis::Base.OneTo{Int64}) @ DimensionalData.Dimensions ~/.julia/packages/DimensionalData/iHSqC/src/Dimensions/format.jl:47 [6] map @ ./tuple.jl:387 [inlined] [7] format @ ~/.julia/packages/DimensionalData/iHSqC/src/Dimensions/format.jl:38 [inlined] [8] format @ ~/.julia/packages/DimensionalData/iHSqC/src/Dimensions/format.jl:35 [inlined] [9] DimensionalData.DimArray(data::Matrix{Float64}, dims::Tuple{DimensionalData.Dimensions.X{Vector{Symbol}}, DimensionalData.Dimensions.Y{StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}}; refdims::Tuple{}, name::DimensionalData.NoName, metadata::DimensionalData.Dimensions.Lookups.NoMetadata) @ DimensionalData ~/.julia/packages/DimensionalData/iHSqC/src/array/array.jl:410 [10] DimArray @ ~/.julia/packages/DimensionalData/iHSqC/src/array/array.jl:407 [inlined] [11] zeros(::Type{Float64}, dims::Tuple{DimensionalData.Dimensions.X{Vector{Symbol}}, DimensionalData.Dimensions.Y{StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}}; kw::@Kwargs{}) @ DimensionalData ~/.julia/packages/DimensionalData/iHSqC/src/array/array.jl:666 [12] zeros @ ~/.julia/packages/DimensionalData/iHSqC/src/array/array.jl:664 [inlined] [13] zeros @ ~/.julia/packages/DimensionalData/iHSqC/src/array/array.jl:647 [inlined] [14] zeros(dim1::DimensionalData.Dimensions.X{Vector{Symbol}}, dims::DimensionalData.Dimensions.Y{StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}) @ DimensionalData ~/.julia/packages/DimensionalData/iHSqC/src/array/array.jl:646 [15] macro expansion @ ~/.julia/packages/DimensionalData/iHSqC/src/precompile.jl:7 [inlined] [16] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined] [17] top-level scope @ ~/.julia/packages/DimensionalData/iHSqC/src/precompile.jl:85 [18] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [19] top-level scope @ ~/.julia/packages/DimensionalData/iHSqC/src/DimensionalData.jl:110 [20] include(mod::Module, _path::String) @ Base ./Base.jl:309 [21] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3000 [22] top-level scope @ stdin:5 [23] eval(m::Module, e::Any) @ Core ./boot.jl:489 [24] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [25] include_string @ ./loading.jl:2856 [inlined] [26] exec_options(opts::Base.JLOptions) @ Base ./client.jl:322 [27] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/DimensionalData/iHSqC/src/precompile.jl:1 in expression starting at /home/pkgeval/.julia/packages/DimensionalData/iHSqC/src/DimensionalData.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile DimensionalData [0703355e-b756-11e9-17c0-8b28908087d0] to "/home/pkgeval/.julia/compiled/v1.13/DimensionalData/jl_y0h9UC" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3287 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2652 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [7] #invokelatest_gr#232 @ ./reflection.jl:1282 [inlined] [8] invokelatest_gr @ ./reflection.jl:1274 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3858 [10] maybe_cachefile_lock @ ./loading.jl:3855 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2638 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2466 [13] macro expansion @ ./loading.jl:2394 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2359 [16] require @ ./loading.jl:2335 [inlined] [17] eval_import_path @ ./module.jl:36 [inlined] [18] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [19] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [20] top-level scope @ ~/.julia/packages/CryoGrid/FYZSa/src/CryoGrid.jl:52 [21] include(mod::Module, _path::String) @ Base ./Base.jl:309 [22] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3000 [23] top-level scope @ stdin:5 [24] eval(m::Module, e::Any) @ Core ./boot.jl:489 [25] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [26] include_string @ ./loading.jl:2856 [inlined] [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:322 [28] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/CryoGrid/FYZSa/src/CryoGrid.jl:1 in expression starting at stdin: in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 1573.13s ################################################################################ # Loading # Loading CryoGrid... Precompiling packages... ✗ LazyArrays ✗ DimensionalData 31238.4 ms ✓ NonlinearSolveBase 14428.4 ms ✓ PreallocationTools → PreallocationToolsReverseDiffExt 62440.7 ms ✓ ComponentArrays → ComponentArraysReverseDiffExt ✗ LazyArrays → LazyArraysStaticArraysExt ✗ LinearSolve 24512.6 ms ✓ NonlinearSolveBase → NonlinearSolveBaseDiffEqBaseExt 3766.4 ms ✓ NonlinearSolveBase → NonlinearSolveBaseSparseMatrixColoringsExt 3662.1 ms ✓ NonlinearSolveBase → NonlinearSolveBaseSparseArraysExt 7676.1 ms ✓ BracketingNonlinearSolve 19859.3 ms ✓ NonlinearSolveBase → NonlinearSolveBaseLineSearchExt 60510.0 ms ✓ NonlinearSolveBase → NonlinearSolveBaseForwardDiffExt ✗ LinearSolve → LinearSolveRecursiveArrayToolsExt ✗ LinearSolve → LinearSolveEnzymeExt ✗ NonlinearSolveBase → NonlinearSolveBaseLinearSolveExt 17452.9 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveForwardDiffExt 50440.8 ms ✓ NonlinearSolveSpectralMethods ✗ NonlinearSolveFirstOrder ✗ NonlinearSolveQuasiNewton 30704.8 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveChainRulesCoreExt 76327.8 ms ✓ SimpleNonlinearSolve 35817.7 ms ✓ NonlinearSolveSpectralMethods → NonlinearSolveSpectralMethodsForwardDiffExt ✗ NonlinearSolveQuasiNewton → NonlinearSolveQuasiNewtonForwardDiffExt 68059.3 ms ✓ SimpleNonlinearSolve → SimpleNonlinearSolveReverseDiffExt 6663.6 ms ✓ SimpleNonlinearSolve → SimpleNonlinearSolveChainRulesCoreExt 6788.7 ms ✓ SimpleNonlinearSolve → SimpleNonlinearSolveDiffEqBaseExt ✗ NonlinearSolve ✗ NonlinearSolve → NonlinearSolveNLsolveExt ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 607 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1213 wait_forever at ./task.jl:1150 jfptr_wait_forever_62247.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3692 [inlined] ijl_apply_generic at /source/src/gf.c:3892 jl_apply at /source/src/julia.h:2343 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007b930d67a680 Total snapshots: 455. Utilization: 0% ╎455 @Base/task.jl:1150 wait_forever() 454╎ 455 @Base/task.jl:1213 wait() ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1213 wait_forever at ./task.jl:1150 jfptr_wait_forever_62247.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3692 [inlined] ijl_apply_generic at /source/src/gf.c:3892 jl_apply at /source/src/julia.h:2343 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007823ae7ef2b0 Total snapshots: 447. Utilization: 0% ╎447 @Base/task.jl:1150 wait_forever() 446╎ 447 @Base/task.jl:1213 wait() Info Given CryoGrid was explicitly requested, output will be shown live   [963] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/CryoGrid/FYZSa/src/CryoGrid.jl:50 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) [607] signal 15: Terminated in expression starting at none:1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1213 wait_forever at ./task.jl:1150 PkgEval terminated after 2763.58s: test duration exceeded the time limit