Package evaluation of ConstraintTrees on Julia 1.13.0-DEV.791 (d5209bd37d*) started at 2025-07-04T11:06:42.387 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.02s ################################################################################ # Installation # Installing ConstraintTrees... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [5515826b] + ConstraintTrees v1.11.0 Updating `~/.julia/environments/v1.13/Manifest.toml` [34da2185] + Compat v4.17.0 [5515826b] + ConstraintTrees v1.11.0 [187b0558] + ConstructionBase v1.6.0 [864edb3b] + DataStructures v0.18.22 [ffbed154] + DocStringExtensions v0.9.5 [bac558e1] + OrderedCollections v1.8.1 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.13.1+0 Installation completed after 3.35s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 251.03s ################################################################################ # Testing # Testing ConstraintTrees Status `/tmp/jl_KIaYQG/Project.toml` [7d9f7c33] Accessors v0.1.42 ⌅ [61c947e1] Clarabel v0.6.0 [5515826b] ConstraintTrees v1.11.0 [187b0558] ConstructionBase v1.6.0 [864edb3b] DataStructures v0.18.22 [ffbed154] DocStringExtensions v0.9.5 [60bf3e95] GLPK v1.2.1 [682c06a0] JSON v0.21.4 [4076af6c] JuMP v1.26.0 [e5567a89] SBML v1.6.0 ⌅ [82193955] SCIP v0.11.14 [f43a241f] Downloads v1.7.0 [2f01184e] SparseArrays v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_KIaYQG/Manifest.toml` [14f7f29c] AMD v0.5.3 [7d9f7c33] Accessors v0.1.42 [6e4b80f9] BenchmarkTools v1.6.0 ⌅ [61c947e1] Clarabel v0.6.0 [523fee87] CodecBzip2 v0.8.5 [944b1d66] CodecZlib v0.7.8 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.17.0 [a33af91c] CompositionsBase v0.1.2 [5515826b] ConstraintTrees v1.11.0 [187b0558] ConstructionBase v1.6.0 [864edb3b] DataStructures v0.18.22 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [ffbed154] DocStringExtensions v0.9.5 [e2ba6199] ExprTools v0.1.10 [f6369f11] ForwardDiff v1.0.1 [60bf3e95] GLPK v1.2.1 [14197337] GenericLinearAlgebra v0.3.17 [615f187c] IfElse v0.1.1 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.4 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [0f8b85d8] JSON3 v1.14.3 [4076af6c] JuMP v1.26.0 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [b8f27783] MathOptInterface v1.41.0 [d8a4904e] MutableArithmetics v1.6.4 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 [69de0a69] Parsers v2.8.3 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [bfc457fd] QDLDL v0.4.1 [ae029012] Requires v1.3.1 [e5567a89] SBML v1.6.0 ⌅ [82193955] SCIP v0.11.14 [66db9d55] SnoopPrecompile v1.0.3 [276daf66] SpecialFunctions v2.5.1 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [856f2bd8] StructTypes v1.11.0 [a759f4b9] TimerOutputs v0.5.29 [3bb67fe8] TranscodingStreams v0.11.3 [1986cc42] Unitful v1.23.1 [ae81ac8f] ASL_jll v0.1.3+0 [6e34b625] Bzip2_jll v1.0.9+0 [e8aa6df9] GLPK_jll v5.0.1+1 [e33a78d0] Hwloc_jll v2.12.1+0 ⌅ [9cc047cb] Ipopt_jll v300.1400.1302+0 [94ce4f54] Libiconv_jll v1.18.0+0 [d00139f3] METIS_jll v5.1.3+0 ⌅ [d7ed1dd3] MUMPS_seq_jll v500.600.100+0 [68e3532b] Ncurses_jll v6.5.1+0 [656ef2d0] OpenBLAS32_jll v0.3.29+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [05236dd9] Readline_jll v8.2.13+0 [bb12108a] SBML_jll v5.20.1+0 ⌅ [fc9abe76] SCIP_PaPILO_jll v800.100.0+0 ⌅ [e5ac4fe4] SCIP_jll v800.100.0+1 ⌅ [319450e9] SPRAL_jll v2023.8.2+0 ⌅ [02c8fc9c] XML2_jll v2.13.6+1 [508c9074] bliss_jll v0.77.0+1 ⌅ [28df3c45] boost_jll v1.79.0+3 ⌅ [1317d2d5] oneTBB_jll v2021.12.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9abbd945] Profile v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [781609d7] GMP_jll v6.3.0+2 [deac9b47] LibCURL_jll v8.14.1+1 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.0+0 [efcefdf7] PCRE2_jll v10.45.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... WARNING: Method definition default_pretty_output_io() in module ConstraintTrees at /home/pkgeval/.julia/packages/ConstraintTrees/HfH8F/src/pretty.jl:65 overwritten in module Main at /home/pkgeval/.julia/packages/ConstraintTrees/HfH8F/test/runtests.jl:23. Precompiling packages... 5376.0 ms ✓ SpecialFunctions 3298.6 ms ✓ BenchmarkTools 16148.8 ms ✓ ForwardDiff 95822.6 ms ✓ MathOptInterface 159195.9 ms ✓ JuMP 5 dependencies successfully precompiled in 280 seconds. 47 already precompiled. Precompiling packages... 2714.5 ms ✓ Unitful → ForwardDiffExt 1 dependency successfully precompiled in 3 seconds. 21 already precompiled. Precompiling packages... 12453.4 ms ✓ GLPK 1 dependency successfully precompiled in 13 seconds. 68 already precompiled. Precompiling packages... 877.2 ms ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 1 dependency successfully precompiled in 1 seconds. 4 already precompiled. Precompiling packages... 2323.3 ms ✓ Accessors → UnitfulExt 1 dependency successfully precompiled in 2 seconds. 16 already precompiled. Precompiling packages... 1992.1 ms ✓ Accessors → TestExt 1 dependency successfully precompiled in 2 seconds. 21 already precompiled. Metabolic modeling: Test Failed at /home/pkgeval/.julia/packages/ConstraintTrees/HfH8F/docs/src/1-metabolic-modeling.jl:482 Expression: c.community.species1.handicap.value.idxs == [49] Evaluated: [42] == [49] Stacktrace: [1] top-level scope @ ~/.julia/packages/ConstraintTrees/HfH8F/docs/src/1-metabolic-modeling.jl:529 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:741 [inlined] [3] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [4] top-level scope @ ~/.julia/packages/ConstraintTrees/HfH8F/test/runtests.jl:22 [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1855 [inlined] [6] macro expansion @ ~/.julia/packages/ConstraintTrees/HfH8F/test/runtests.jl:26 [inlined] [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1855 [inlined] [8] macro expansion @ ~/.julia/packages/ConstraintTrees/HfH8F/test/runtests.jl:26 [inlined] Precompiling packages... 1208.7 ms ✓ SnoopPrecompile 12930.5 ms ✓ StaticArrays 1551.5 ms ✓ StaticArrays → StaticArraysStatisticsExt 3808.9 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 155010.5 ms ✓ Clarabel 5 dependencies successfully precompiled in 175 seconds. 58 already precompiled. Precompiling packages... 1612.9 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1 dependency successfully precompiled in 2 seconds. 10 already precompiled. Precompiling packages... 1670.7 ms ✓ Accessors → StaticArraysExt 1 dependency successfully precompiled in 2 seconds. 18 already precompiled. Precompiling packages... 19412.2 ms ✓ SCIP 1 dependency successfully precompiled in 20 seconds. 81 already precompiled. Test Summary: | Pass Fail Total Time ConstraintTrees tests | 141 1 142 14m52.8s Metabolic modeling | 17 1 18 7m06.4s Quadratic optimization | 7 7 6m02.4s Mixed-integer optimization | 5 5 46.2s Functional tree processing | 31 31 33.9s JuMP integration improvements | 5 5 0.8s Serialization | 1 1 13.2s Miscellaneous methods | 74 74 9.7s RNG of the outermost testset: Random.Xoshiro(0xbbe95f1074fa3e9e, 0x2e9d65fa1ac24504, 0x2e469aec2076f89f, 0x4783a50b3001152c, 0x23bc1ae9b79b7cf9) ERROR: LoadError: Some tests did not pass: 141 passed, 1 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/ConstraintTrees/HfH8F/test/runtests.jl:19 Testing failed after 904.13s ERROR: LoadError: Package ConstraintTrees errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2423 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2278 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:500 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:309 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:324 [12] _start() @ Base ./client.jl:557 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 1192.15s: package has test failures