Package evaluation of CNNSeq2exp on Julia 1.13.0-DEV.791 (d5209bd37d*) started at 2025-07-05T00:51:59.664


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# Set-up
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Set-up completed after 0.2s


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# Installation
#

Installing CNNSeq2exp...
   Resolving package versions...
    Updating `~/.julia/environments/v1.13/Project.toml`
  [ca0eaa81] + CNNSeq2exp v0.1.0
    Updating `~/.julia/environments/v1.13/Manifest.toml`
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  [ca0eaa81] + CNNSeq2exp v0.1.0
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  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] + LibCURL_jll v8.14.1+1
  [e37daf67] + LibGit2_jll v1.9.1+0
  [29816b5a] + LibSSH2_jll v1.11.3+1
  [14a3606d] + MozillaCACerts_jll v2025.5.20
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [05823500] + OpenLibm_jll v0.8.5+0
  [458c3c95] + OpenSSL_jll v3.5.0+0
  [efcefdf7] + PCRE2_jll v10.45.0+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [83775a58] + Zlib_jll v1.3.1+2
  [3161d3a3] + Zstd_jll v1.5.7+1
  [8e850b90] + libblastrampoline_jll v5.13.1+0
  [8e850ede] + nghttp2_jll v1.65.0+0
  [3f19e933] + p7zip_jll v17.5.0+2
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 14.31s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...
No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml`
No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml`

Precompiling package dependencies...
Precompiling packages...
 819429.2 ms  ? CNNSeq2exp

Precompilation completed after 841.38s


################################################################################
# Loading
#

Loading CNNSeq2exp...
Precompiling packages...
Info Given CNNSeq2exp was explicitly requested, output will be shown live 
WARNING: Constructor for type "Int" was extended in `CUDA` without explicit qualification or import.
  NOTE: Assumed "Int" refers to `Base.Int`. This behavior is deprecated and may differ in future versions.
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function Int end`.
  Hint: To silence the warning, qualify `Int` as `Base.Int` in the method signature or explicitly `import Base: Int`.
WARNING: Constructor for type "UInt" was extended in `CUDA` without explicit qualification or import.
  NOTE: Assumed "UInt" refers to `Base.UInt`. This behavior is deprecated and may differ in future versions.
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function UInt end`.
  Hint: To silence the warning, qualify `UInt` as `Base.UInt` in the method signature or explicitly `import Base: UInt`.
WARNING: Constructor for type "BroadcastStyle" was extended in `CUDA` without explicit qualification or import.
  NOTE: Assumed "BroadcastStyle" refers to `Broadcast.BroadcastStyle`. This behavior is deprecated and may differ in future versions.
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function BroadcastStyle end`.
  Hint: To silence the warning, qualify `BroadcastStyle` as `Broadcast.BroadcastStyle` in the method signature or explicitly `import Broadcast: BroadcastStyle`.
WARNING: Constructor for type "CuArray" was extended in `CUBLAS` without explicit qualification or import.
  NOTE: Assumed "CuArray" refers to `CUDA.CuArray`. This behavior is deprecated and may differ in future versions.
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function CuArray end`.
  Hint: To silence the warning, qualify `CuArray` as `CUDA.CuArray` in the method signature or explicitly `import CUDA: CuArray`.
WARNING: Constructor for type "SparseVector" was extended in `CUSPARSE` without explicit qualification or import.
  NOTE: Assumed "SparseVector" refers to `SparseArrays.SparseVector`. This behavior is deprecated and may differ in future versions.
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function SparseVector end`.
  Hint: To silence the warning, qualify `SparseVector` as `SparseArrays.SparseVector` in the method signature or explicitly `import SparseArrays: SparseVector`.
WARNING: Constructor for type "SparseMatrixCSC" was extended in `CUSPARSE` without explicit qualification or import.
  NOTE: Assumed "SparseMatrixCSC" refers to `SparseArrays.SparseMatrixCSC`. This behavior is deprecated and may differ in future versions.
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function SparseMatrixCSC end`.
  Hint: To silence the warning, qualify `SparseMatrixCSC` as `SparseArrays.SparseMatrixCSC` in the method signature or explicitly `import SparseArrays: SparseMatrixCSC`.
WARNING: Constructor for type "CuVector" was extended in `CUSPARSE` without explicit qualification or import.
  NOTE: Assumed "CuVector" refers to `CUDA.CuVector`. This behavior is deprecated and may differ in future versions.
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function CuVector end`.
  Hint: To silence the warning, qualify `CuVector` as `CUDA.CuVector` in the method signature or explicitly `import CUDA: CuVector`.
WARNING: Constructor for type "CuMatrix" was extended in `CUSOLVER` without explicit qualification or import.
  NOTE: Assumed "CuMatrix" refers to `CUDA.CuMatrix`. This behavior is deprecated and may differ in future versions.
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function CuMatrix end`.
  Hint: To silence the warning, qualify `CuMatrix` as `CUDA.CuMatrix` in the method signature or explicitly `import CUDA: CuMatrix`.
WARNING: Constructor for type "CuArray" was extended in `CUSOLVER` without explicit qualification or import.
  NOTE: Assumed "CuArray" refers to `CUDA.CuArray`. This behavior is deprecated and may differ in future versions.
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function CuArray end`.
  Hint: To silence the warning, qualify `CuArray` as `CUDA.CuArray` in the method signature or explicitly `import CUDA: CuArray`.
┌ Warning: Package cuDNN not found in current path.
│ - Run `import Pkg; Pkg.add("cuDNN")` to install the cuDNN package, then restart julia.
│ - If cuDNN is not installed, some Flux functionalities will not be available when running on the GPU.
└ @ FluxCUDAExt ~/.julia/packages/Flux/9PibT/ext/FluxCUDAExt/FluxCUDAExt.jl:10
WARNING: Method definition mean(IntervalSets.AbstractInterval{T} where T) in module IntervalSetsStatisticsExt at /home/pkgeval/.julia/packages/IntervalSets/CFJJK/ext/IntervalSetsStatisticsExt.jl:6 overwritten in module IntervalSetsStatisticsExt on the same line (check for duplicate calls to `include`).
ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation.
1.2509151e6 ms  ? CNNSeq2exp
┌ Warning: Package cuDNN not found in current path.
│ - Run `import Pkg; Pkg.add("cuDNN")` to install the cuDNN package, then restart julia.
│ - If cuDNN is not installed, some Flux functionalities will not be available when running on the GPU.
└ @ FluxCUDAExt ~/.julia/packages/Flux/9PibT/ext/FluxCUDAExt/FluxCUDAExt.jl:10

======================================================================================
Information request received. A stacktrace will print followed by a 1.0 second profile
======================================================================================

cmd: /opt/julia/bin/julia 401 running 1 of 1

signal (10): User defined signal 1
subtype_tuple_tail at /source/src/subtype.c:1292 [inlined]
subtype_tuple at /source/src/subtype.c:1376 [inlined]
subtype at /source/src/subtype.c:1550
exists_subtype at /source/src/subtype.c:1793 [inlined]
forall_exists_subtype at /source/src/subtype.c:1822
ijl_types_equal at /source/src/subtype.c:2391 [inlined]
ijl_types_equal at /source/src/subtype.c:2321
jl_specializations_get_linfo_ at /source/src/gf.c:237
jl_restore_system_image_from_stream_ at /source/src/staticdata.c:4201
jl_restore_package_image_from_stream at /source/src/staticdata.c:4409
ijl_restore_incremental at /source/src/staticdata.c:4491
#_include_from_serialized#869 at ./loading.jl:1274
_include_from_serialized at ./loading.jl:1246 [inlined]
#_require_search_from_serialized#885 at ./loading.jl:2088
_require_search_from_serialized at ./loading.jl:1982 [inlined]
_tryrequire_from_serialized at ./loading.jl:1925
_tryrequire_from_serialized at ./loading.jl:1969
__require_prelocked at ./loading.jl:2667
_require_prelocked at ./loading.jl:2466
macro expansion at ./loading.jl:2394 [inlined]
macro expansion at ./lock.jl:376 [inlined]
__require at ./loading.jl:2359
jfptr___require_49932.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:3692 [inlined]
ijl_apply_generic at /source/src/gf.c:3892
jl_apply at /source/src/julia.h:2343 [inlined]
jl_f_invoke_in_world at /source/src/builtins.c:896
require at ./loading.jl:2335 [inlined]
eval_import_path at ./module.jl:36 [inlined]
eval_import_path_all at ./module.jl:60
_eval_using at ./module.jl:137
jfptr__eval_using_32887.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:3692 [inlined]
ijl_apply_generic at /source/src/gf.c:3892
jl_apply at /source/src/julia.h:2343 [inlined]
do_call at /source/src/interpreter.c:123
eval_value at /source/src/interpreter.c:243
eval_stmt_value at /source/src/interpreter.c:194 [inlined]
eval_body at /source/src/interpreter.c:708
jl_interpret_toplevel_thunk at /source/src/interpreter.c:899
jl_toplevel_eval_flex at /source/src/toplevel.c:773
jl_eval_module_expr at /source/src/toplevel.c:196 [inlined]
jl_toplevel_eval_flex at /source/src/toplevel.c:658
jl_toplevel_eval_flex at /source/src/toplevel.c:713
ijl_toplevel_eval at /source/src/toplevel.c:785
ijl_toplevel_eval_in at /source/src/toplevel.c:830
eval at ./boot.jl:489
include_string at ./loading.jl:2846
_jl_invoke at /source/src/gf.c:3692 [inlined]
ijl_apply_generic at /source/src/gf.c:3892
_include at ./loading.jl:2906
include at ./Base.jl:309
include_package_for_output at ./loading.jl:3000
jfptr_include_package_for_output_26396.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:3692 [inlined]
ijl_apply_generic at /source/src/gf.c:3892
jl_apply at /source/src/julia.h:2343 [inlined]
do_call at /source/src/interpreter.c:123
eval_value at /source/src/interpreter.c:243
eval_stmt_value at /source/src/interpreter.c:194 [inlined]
eval_body at /source/src/interpreter.c:708
jl_interpret_toplevel_thunk at /source/src/interpreter.c:899
jl_toplevel_eval_flex at /source/src/toplevel.c:773
jl_toplevel_eval_flex at /source/src/toplevel.c:713
ijl_toplevel_eval at /source/src/toplevel.c:785
ijl_toplevel_eval_in at /source/src/toplevel.c:830
eval at ./boot.jl:489
include_string at ./loading.jl:2846
include_string at ./loading.jl:2856 [inlined]
exec_options at ./client.jl:322
_start at ./client.jl:557
jfptr__start_33252.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:3692 [inlined]
ijl_apply_generic at /source/src/gf.c:3892
jl_apply at /source/src/julia.h:2343 [inlined]
true_main at /source/src/jlapi.c:964
jl_repl_entrypoint at /source/src/jlapi.c:1132
main at /source/cli/loader_exe.c:58
unknown function (ip: 0x73a0f9c53249) at /lib/x86_64-linux-gnu/libc.so.6
__libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S
unknown function (ip: (nil)) at (unknown file)

==============================================================
Profile collected. A report will print at the next yield point
==============================================================


======================================================================================
Information request received. A stacktrace will print followed by a 1.0 second profile
======================================================================================

cmd: /opt/julia/bin/julia 237 running 0 of 1

signal (10): User defined signal 1
epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404
uv_run at /workspace/srcdir/libuv/src/unix/core.c:430
ijl_task_get_next at /source/src/scheduler.c:457
wait at ./task.jl:1213
wait_forever at ./task.jl:1150
jfptr_wait_forever_62247.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:3692 [inlined]
ijl_apply_generic at /source/src/gf.c:3892
jl_apply at /source/src/julia.h:2343 [inlined]
start_task at /source/src/task.c:1249
unknown function (ip: (nil)) at (unknown file)

==============================================================
Profile collected. A report will print at the next yield point
==============================================================


======================================================================================
Information request received. A stacktrace will print followed by a 1.0 second profile
======================================================================================

cmd: /opt/julia/bin/julia 1 running 0 of 1

signal (10): User defined signal 1
epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404
uv_run at /workspace/srcdir/libuv/src/unix/core.c:430
ijl_task_get_next at /source/src/scheduler.c:457
wait at ./task.jl:1213
wait_forever at ./task.jl:1150
jfptr_wait_forever_62247.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:3692 [inlined]
ijl_apply_generic at /source/src/gf.c:3892
jl_apply at /source/src/julia.h:2343 [inlined]
start_task at /source/src/task.c:1249
unknown function (ip: (nil)) at (unknown file)

==============================================================
Profile collected. A report will print at the next yield point
==============================================================

┌ Warning: There were no samples collected in one or more groups.
│ This may be due to idle threads, or you may need to run your
│ program longer (perhaps by running it multiple times),
│ or adjust the delay between samples with `Profile.init()`.
└ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362
Overhead ╎ [+additional indent] Count File:Line  Function
=========================================================
Thread 1 (default) Task 0x00007464c1fe20e0 Total snapshots: 477. Utilization: 0%
   ╎477 @Base/task.jl:1150  wait_forever()
476╎ 477 @Base/task.jl:1213  wait()


[440] signal 15: Terminated
in expression starting at none:0
epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)

[237] signal 15: Terminated
in expression starting at none:1
epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404
uv_run at /workspace/srcdir/libuv/src/unix/core.c:430
ijl_task_get_next at /source/src/scheduler.c:457

[401] signal 15: Terminated
in expression starting at /home/pkgeval/.julia/packages/CNNSeq2exp/ifBlq/src/CNNSeq2exp.jl:12
unknown function (ip: 0x73a0f9cc3763) at /lib/x86_64-linux-gnu/libc.so.6
malloc at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404
uv_run at /workspace/srcdir/libuv/src/unix/core.c:430
ijl_task_get_next at /source/src/scheduler.c:457
operator new at /workspace/srcdir/gcc-14.2.0/libstdc++-v3/libsupc++/new_op.cc:50
_ZN4llvm6MDNodenwEmmNS_8Metadata11StorageTypeE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line)
_ZN4llvm10DILocation7getImplERNS_11LLVMContextEjjPNS_8MetadataES4_bNS3_11StorageTypeEb at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line)
_ZNK4llvm6MDNode5cloneEv at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line)
wait at ./task.jl:1213
wait_forever at ./task.jl:1150
_ZN12_GLOBAL__N_112MDNodeMapper13mapNodesInPOTERNS0_12UniquedGraphE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line)
jfptr_wait_forever_62247.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:3692 [inlined]
ijl_apply_generic at /source/src/gf.c:3892

PkgEval terminated after 2733.26s: test duration exceeded the time limit