Package evaluation of TrajGWAS on Julia 1.13.0-DEV.923 (d2bbd0af86*) started at 2025-07-30T19:16:08.363 ################################################################################ # Set-up # Set-up completed after 0.24s ################################################################################ # Installation # Installing TrajGWAS... Resolving package versions... Installed CommonWorldInvalidations ───────── v1.0.0 Installed Bzip2_jll ──────────────────────── v1.0.9+0 Installed Glob ───────────────────────────── v1.3.1 Installed SIMDTypes ──────────────────────── v0.1.0 Installed InlineStrings ──────────────────── v1.4.4 Installed OrderedCollections ─────────────── v1.8.1 Installed HypothesisTests ────────────────── v0.11.5 Installed Optim ──────────────────────────── v1.13.2 Installed MUMPS_seq_jll ──────────────────── v500.800.0+0 Installed OpenSpecFun_jll ────────────────── v0.5.6+0 Installed Ipopt_jll ──────────────────────── v300.1400.1701+0 Installed CpuId ──────────────────────────── v0.3.1 Installed SentinelArrays ─────────────────── v1.4.8 Installed NaNMath ────────────────────────── v1.1.3 Installed StaticArrayInterface ───────────── v1.8.0 Installed QuadGK ─────────────────────────── v2.11.2 Installed WoodburyMatrices ───────────────── v1.0.0 Installed Reexport ───────────────────────── v1.2.2 Installed EnumX ──────────────────────────── v1.0.5 Installed Tables ─────────────────────────── v1.12.1 Installed DBInterface ────────────────────── v2.6.1 Installed InverseFunctions ───────────────── v0.1.17 Installed Missings ───────────────────────── v1.2.0 Installed Crayons ────────────────────────── v4.1.1 Installed NLSolversBase ──────────────────── v7.10.0 Installed LaTeXStrings ───────────────────── v1.4.0 Installed TableTraits ────────────────────── v1.0.1 Installed UnPack ─────────────────────────── v1.0.2 Installed Preferences ────────────────────── v1.4.3 Installed Static ─────────────────────────── v1.2.0 Installed SortingAlgorithms ──────────────── v1.2.1 Installed MacroTools ─────────────────────── v0.5.16 Installed ManualMemory ───────────────────── v0.1.8 Installed DiffResults ────────────────────── v1.1.0 Installed CodecZstd ──────────────────────── v0.8.6 Installed ADTypes ────────────────────────── v1.16.0 Installed DataStructures ─────────────────── v0.18.22 Installed FillArrays ─────────────────────── v1.13.0 Installed DataValueInterfaces ────────────── v1.0.0 Installed DelimitedFiles ─────────────────── v1.9.1 Installed CodecZlib ──────────────────────── v0.7.8 Installed VCFTools ───────────────────────── v0.2.10 Installed HostCPUFeatures ────────────────── v0.1.17 Installed VectorizationBase ──────────────── v0.21.71 Installed ArrayInterface ─────────────────── v7.19.0 Installed StatsBase ──────────────────────── v0.34.5 Installed IrrationalConstants ────────────── v0.2.4 Installed LayoutPointers ─────────────────── v0.1.17 Installed Hwloc_jll ──────────────────────── v2.12.1+0 Installed CommonSubexpressions ───────────── v0.3.1 Installed BufferedStreams ────────────────── v1.2.2 Installed Setfield ───────────────────────── v1.1.2 Installed Roots ──────────────────────────── v2.2.8 Installed SPRAL_jll ──────────────────────── v2025.5.20+0 Installed PooledArrays ───────────────────── v1.4.3 Installed PDMats ─────────────────────────── v0.11.35 Installed BenchmarkTools ─────────────────── v1.6.0 Installed CodecXz ────────────────────────── v0.7.4 Installed Interpolations ─────────────────── v0.16.1 Installed SQLite ─────────────────────────── v1.6.1 Installed DocStringExtensions ────────────── v0.9.5 Installed CompositionsBase ───────────────── v0.1.2 Installed CommonSolve ────────────────────── v0.2.4 Installed WorkerUtilities ────────────────── v1.6.1 Installed ForwardDiff ────────────────────── v1.0.1 Installed DifferentiationInterface ───────── v0.7.3 Installed Rmath_jll ──────────────────────── v0.5.1+0 Installed AliasTables ────────────────────── v1.1.3 Installed SLEEFPirates ───────────────────── v0.6.43 Installed BitTwiddlingConvenienceFunctions ─ v0.1.6 Installed StatsModels ────────────────────── v0.7.4 Installed IteratorInterfaceExtensions ────── v1.0.0 Installed Combinatorics ──────────────────── v1.0.3 Installed SIMD ───────────────────────────── v3.7.1 Installed MathOptInterface ───────────────── v1.42.0 Installed WiSER ──────────────────────────── v0.2.6 Installed ShiftedArrays ──────────────────── v2.0.0 Installed DataAPI ────────────────────────── v1.16.0 Installed InvertedIndices ────────────────── v1.3.1 Installed StaticArraysCore ───────────────── v1.4.3 Installed AxisAlgorithms ─────────────────── v1.1.0 Installed StringManipulation ─────────────── v0.4.1 Installed Requires ───────────────────────── v1.3.1 Installed StaticArrays ───────────────────── v1.9.14 Installed LogExpFunctions ────────────────── v0.3.29 Installed DiffRules ──────────────────────── v1.15.1 Installed JSON ───────────────────────────── v0.21.4 Installed OpenBLAS32_jll ─────────────────── v0.3.29+0 Installed GeneticVariantBase ─────────────── v0.1.2 Installed Parsers ────────────────────────── v2.8.3 Installed FiniteDiff ─────────────────────── v2.27.0 Installed PrettyTables ───────────────────── v2.4.0 Installed Rmath ──────────────────────────── v0.8.0 Installed Distributions ──────────────────── v0.25.120 Installed CloseOpenIntervals ─────────────── v0.1.13 Installed StatsFuns ──────────────────────── v1.5.0 Installed JLLWrappers ────────────────────── v1.7.1 Installed XZ_jll ─────────────────────────── v5.8.1+0 Installed BioGenerics ────────────────────── v0.1.5 Installed MutableArithmetics ─────────────── v1.6.4 Installed WeakRefStrings ─────────────────── v1.4.2 Installed DataFrames ─────────────────────── v1.7.0 Installed StructTypes ────────────────────── v1.11.0 Installed ThreadingUtilities ─────────────── v0.5.5 Installed NLopt ──────────────────────────── v0.6.5 Installed BGZFStreams ────────────────────── v0.3.2 Installed TrajGWAS ───────────────────────── v0.4.7 Installed FilePathsBase ──────────────────── v0.9.24 Installed Accessors ──────────────────────── v0.1.42 Installed VariantCallFormat ──────────────── v0.5.6 Installed CategoricalArrays ──────────────── v0.10.8 Installed Adapt ──────────────────────────── v4.3.0 Installed HypergeometricFunctions ────────── v0.3.28 Installed Compat ─────────────────────────── v4.18.0 Installed ConstructionBase ───────────────── v1.6.0 Installed Statistics ─────────────────────── v1.11.1 Installed PositiveFactorizations ─────────── v0.2.4 Installed TranscodingStreams ─────────────── v0.9.13 Installed LoopVectorization ──────────────── v0.12.172 Installed StatsAPI ───────────────────────── v1.7.1 Installed ASL_jll ────────────────────────── v0.1.3+0 Installed ProgressMeter ──────────────────── v1.10.4 Installed CodecBzip2 ─────────────────────── v0.8.5 Installed OffsetArrays ───────────────────── v1.17.0 Installed PrecompileTools ────────────────── v1.3.2 Installed ChainRulesCore ─────────────────── v1.25.2 Installed Ratios ─────────────────────────── v0.4.5 Installed JSON3 ──────────────────────────── v1.14.3 Installed CPUSummary ─────────────────────── v0.2.6 Installed IfElse ─────────────────────────── v0.1.1 Installed PtrArrays ──────────────────────── v1.3.0 Installed Parameters ─────────────────────── v0.12.3 Installed SpecialFunctions ───────────────── v2.5.1 Installed METIS_jll ──────────────────────── v5.1.3+0 Installed SQLite_jll ─────────────────────── v3.48.0+0 Installed Ipopt ──────────────────────────── v1.10.6 Installed PolyesterWeave ─────────────────── v0.2.2 Installed LineSearches ───────────────────── v7.4.0 Installed Automa ─────────────────────────── v0.8.4 Installed NLopt_jll ──────────────────────── v2.10.0+0 Installed MathProgBase ───────────────────── v0.7.8 Installed CSV ────────────────────────────── v0.10.15 Installed SnpArrays ──────────────────────── v0.3.22 Installed BGEN ───────────────────────────── v0.2.2 Installing 13 artifacts Installed artifact Bzip2 503.5 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact Ipopt 1.3 MiB Installed artifact SPRAL 691.8 KiB Installed artifact Rmath 121.9 KiB Installed artifact XZ 1.5 MiB Installed artifact NLopt 322.7 KiB Installed artifact Hwloc 3.5 MiB Installed artifact METIS 1.1 MiB Installed artifact ASL 276.3 KiB Installed artifact SQLite 5.0 MiB Installed artifact MUMPS_seq 8.6 MiB Installed artifact OpenBLAS32 10.0 MiB Updating `~/.julia/environments/v1.13/Project.toml` [9514c204] + TrajGWAS v0.4.7 Updating `~/.julia/environments/v1.13/Manifest.toml` [47edcb42] + ADTypes v1.16.0 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.19.0 ⌅ [67c07d97] + Automa v0.8.4 [13072b0f] + AxisAlgorithms v1.1.0 [6db4b851] + BGEN v0.2.2 [28d598bf] + BGZFStreams v0.3.2 [6e4b80f9] + BenchmarkTools v1.6.0 [47718e42] + BioGenerics v0.1.5 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [e1450e63] + BufferedStreams v1.2.2 [2a0fbf3d] + CPUSummary v0.2.6 [336ed68f] + CSV v0.10.15 [324d7699] + CategoricalArrays v0.10.8 [d360d2e6] + ChainRulesCore v1.25.2 [fb6a15b2] + CloseOpenIntervals v0.1.13 [523fee87] + CodecBzip2 v0.8.5 [ba30903b] + CodecXz v0.7.4 [944b1d66] + CodecZlib v0.7.8 [6b39b394] + CodecZstd v0.8.6 [861a8166] + Combinatorics v1.0.3 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.0 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [a10d1c49] + DBInterface v2.6.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.3 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.13.0 [6a86dc24] + FiniteDiff v2.27.0 [f6369f11] + ForwardDiff v1.0.1 [2447270c] + GeneticVariantBase v0.1.2 [c27321d9] + Glob v1.3.1 [3e5b6fbb] + HostCPUFeatures v0.1.17 [34004b35] + HypergeometricFunctions v0.3.28 [09f84164] + HypothesisTests v0.11.5 [615f187c] + IfElse v0.1.1 [842dd82b] + InlineStrings v1.4.4 [a98d9a8b] + Interpolations v0.16.1 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [b6b21f68] + Ipopt v1.10.6 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v0.21.4 [0f8b85d8] + JSON3 v1.14.3 [b964fa9f] + LaTeXStrings v1.4.0 [10f19ff3] + LayoutPointers v0.1.17 [d3d80556] + LineSearches v7.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [bdcacae8] + LoopVectorization v0.12.172 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [b8f27783] + MathOptInterface v1.42.0 [fdba3010] + MathProgBase v0.7.8 [e1d29d7a] + Missings v1.2.0 [d8a4904e] + MutableArithmetics v1.6.4 [d41bc354] + NLSolversBase v7.10.0 ⌅ [76087f3c] + NLopt v0.6.5 [77ba4419] + NaNMath v1.1.3 [6fe1bfb0] + OffsetArrays v1.17.0 [429524aa] + Optim v1.13.2 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [1d0040c9] + PolyesterWeave v0.2.2 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [92933f4c] + ProgressMeter v1.10.4 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [c84ed2f1] + Ratios v0.4.5 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [f2b01f46] + Roots v2.2.8 [fdea26ae] + SIMD v3.7.1 [94e857df] + SIMDTypes v0.1.0 [476501e8] + SLEEFPirates v0.6.43 [0aa819cd] + SQLite v1.6.1 [91c51154] + SentinelArrays v1.4.8 [efcf1570] + Setfield v1.1.2 [1277b4bf] + ShiftedArrays v2.0.0 [4e780e97] + SnpArrays v0.3.22 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [aedffcd0] + Static v1.2.0 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.14 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [4c63d2b9] + StatsFuns v1.5.0 [3eaba693] + StatsModels v0.7.4 [892a3eda] + StringManipulation v0.4.1 [856f2bd8] + StructTypes v1.11.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [8290d209] + ThreadingUtilities v0.5.5 [9514c204] + TrajGWAS v0.4.7 ⌅ [3bb67fe8] + TranscodingStreams v0.9.13 [3a884ed6] + UnPack v1.0.2 [a620830f] + VCFTools v0.2.10 [28eba6e3] + VariantCallFormat v0.5.6 [3d5dd08c] + VectorizationBase v0.21.71 [ea10d353] + WeakRefStrings v1.4.2 [2ff19380] + WiSER v0.2.6 [efce3f68] + WoodburyMatrices v1.0.0 [76eceee3] + WorkerUtilities v1.6.1 [ae81ac8f] + ASL_jll v0.1.3+0 [6e34b625] + Bzip2_jll v1.0.9+0 [e33a78d0] + Hwloc_jll v2.12.1+0 [9cc047cb] + Ipopt_jll v300.1400.1701+0 [d00139f3] + METIS_jll v5.1.3+0 [d7ed1dd3] + MUMPS_seq_jll v500.800.0+0 [079eb43e] + NLopt_jll v2.10.0+0 [656ef2d0] + OpenBLAS32_jll v0.3.29+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [319450e9] + SPRAL_jll v2025.5.20+0 [76ed43ae] + SQLite_jll v3.48.0+0 [ffd25f8a] + XZ_jll v5.8.1+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9abbd945] + Profile v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.7.15 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.5.1+0 [efcefdf7] + PCRE2_jll v10.45.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 18.03s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml` No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml` Precompiling package dependencies... Precompiling packages... 1069.1 ms ✓ Glob 1107.0 ms ✓ DocStringExtensions 905.8 ms ✓ ManualMemory 744.5 ms ✓ DataValueInterfaces 2014.5 ms ✓ IrrationalConstants 830.8 ms ✓ LaTeXStrings 793.3 ms ✓ UnPack 1966.0 ms ✓ Combinatorics 1026.6 ms ✓ WorkerUtilities 1108.3 ms ✓ Requires 1035.2 ms ✓ ConstructionBase 1059.8 ms ✓ Statistics 748.0 ms ✓ CommonSolve 746.3 ms ✓ SIMDTypes 827.4 ms ✓ DBInterface 851.9 ms ✓ DataAPI 1683.5 ms ✓ InlineStrings 852.1 ms ✓ InvertedIndices 813.1 ms ✓ StatsAPI 5046.1 ms ✓ MacroTools 1505.4 ms ✓ OrderedCollections 1094.7 ms ✓ IteratorInterfaceExtensions 1567.1 ms ✓ ADTypes 1083.0 ms ✓ BufferedStreams 1837.0 ms ✓ Crayons 1677.4 ms ✓ OffsetArrays 805.5 ms ✓ IfElse 909.9 ms ✓ EnumX 1932.7 ms ✓ FillArrays 946.6 ms ✓ PositiveFactorizations 960.9 ms ✓ DelimitedFiles 833.1 ms ✓ ShiftedArrays 786.4 ms ✓ PtrArrays 756.8 ms ✓ CommonWorldInvalidations 896.0 ms ✓ StaticArraysCore 781.3 ms ✓ Reexport 815.5 ms ✓ CompositionsBase 940.0 ms ✓ InverseFunctions 1209.6 ms ✓ SuiteSparse 1007.2 ms ✓ NaNMath 1382.5 ms ✓ WoodburyMatrices 2093.7 ms ✓ MathProgBase 1787.3 ms ✓ ProgressMeter 1990.8 ms ✓ CpuId 3851.6 ms ✓ SentinelArrays 1589.5 ms ✓ StructTypes 1130.0 ms ✓ Preferences 1126.6 ms ✓ Compat 2329.8 ms ✓ TranscodingStreams 11330.1 ms ✓ MutableArithmetics 1945.9 ms ✓ ThreadingUtilities 2025.1 ms ✓ LogExpFunctions 831.8 ms ✓ Ratios 1068.4 ms ✓ Adapt 823.6 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 1233.4 ms ✓ Statistics → SparseArraysExt 976.9 ms ✓ Missings 996.4 ms ✓ PooledArrays 1620.6 ms ✓ CommonSubexpressions 969.2 ms ✓ Parameters 766.5 ms ✓ TableTraits 1891.1 ms ✓ DifferentiationInterface 818.1 ms ✓ ADTypes → ADTypesConstructionBaseExt 904.1 ms ✓ FillArrays → FillArraysStatisticsExt 1437.8 ms ✓ FillArrays → FillArraysSparseArraysExt 930.5 ms ✓ AliasTables 856.7 ms ✓ DiffResults 1863.7 ms ✓ InverseFunctions → InverseFunctionsTestExt 912.1 ms ✓ InverseFunctions → InverseFunctionsDatesExt 862.1 ms ✓ CompositionsBase → CompositionsBaseInverseFunctionsExt 1816.9 ms ✓ PDMats 1345.7 ms ✓ AxisAlgorithms 892.3 ms ✓ PrecompileTools 1109.1 ms ✓ JLLWrappers 912.3 ms ✓ Compat → CompatLinearAlgebraExt 2362.8 ms ✓ Automa 2505.9 ms ✓ CodecZstd 1716.0 ms ✓ CodecZlib 1707.4 ms ✓ BioGenerics 811.0 ms ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 1217.2 ms ✓ Adapt → AdaptSparseArraysExt 1119.9 ms ✓ ArrayInterface 854.4 ms ✓ OffsetArrays → OffsetArraysAdaptExt 3019.2 ms ✓ Setfield 7176.8 ms ✓ CategoricalArrays 1725.1 ms ✓ Tables 1276.5 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 5199.3 ms ✓ Accessors 1414.2 ms ✓ FillArrays → FillArraysPDMatsExt 3392.6 ms ✓ StringManipulation 16658.1 ms ✓ SIMD 13147.7 ms ✓ StaticArrays 16535.3 ms ✓ Parsers 5205.5 ms ✓ Static 1422.9 ms ✓ XZ_jll 1377.2 ms ✓ OpenSpecFun_jll 1412.3 ms ✓ Rmath_jll 1656.7 ms ✓ METIS_jll 1809.5 ms ✓ ASL_jll 1533.5 ms ✓ Hwloc_jll 1374.7 ms ✓ NLopt_jll 1381.6 ms ✓ OpenBLAS32_jll 1386.3 ms ✓ SQLite_jll 1339.8 ms ✓ Bzip2_jll 2719.9 ms ✓ ChainRulesCore 2425.1 ms ✓ FilePathsBase 4432.8 ms ✓ DataStructures 1809.3 ms ✓ BGZFStreams 1230.4 ms ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 735.9 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 1599.8 ms ✓ CategoricalArrays → CategoricalArraysSentinelArraysExt 1522.6 ms ✓ CategoricalArrays → CategoricalArraysStructTypesExt 2491.4 ms ✓ Accessors → LinearAlgebraExt 1907.5 ms ✓ Accessors → TestExt 28203.4 ms ✓ PrettyTables 1394.2 ms ✓ StaticArrays → StaticArraysStatisticsExt 1411.8 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1300.4 ms ✓ Adapt → AdaptStaticArraysExt 1415.6 ms ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 1609.4 ms ✓ Accessors → StaticArraysExt 15019.7 ms ✓ JSON3 3646.6 ms ✓ JSON 984.2 ms ✓ InlineStrings → ParsersExt 953.9 ms ✓ BitTwiddlingConvenienceFunctions 2799.0 ms ✓ CPUSummary 9681.7 ms ✓ StaticArrayInterface 1844.1 ms ✓ CodecXz 5063.1 ms ✓ SpecialFunctions 1692.1 ms ✓ Rmath 1575.2 ms ✓ MUMPS_seq_jll 1511.9 ms ✓ SPRAL_jll 1904.0 ms ✓ CodecBzip2 1320.3 ms ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 907.3 ms ✓ ADTypes → ADTypesChainRulesCoreExt 3081.8 ms ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 872.4 ms ✓ DifferentiationInterface → DifferentiationInterfaceChainRulesCoreExt 892.2 ms ✓ ArrayInterface → ArrayInterfaceChainRulesCoreExt 1442.1 ms ✓ StaticArrays → StaticArraysChainRulesCoreExt 1682.4 ms ✓ FilePathsBase → FilePathsBaseMmapExt 3377.8 ms ✓ FilePathsBase → FilePathsBaseTestExt 2924.0 ms ✓ QuadGK 1801.4 ms ✓ SortingAlgorithms 17052.0 ms ✓ VariantCallFormat 1275.4 ms ✓ FiniteDiff 6451.4 ms ✓ Roots 2936.9 ms ✓ BenchmarkTools 1560.0 ms ✓ CategoricalArrays → CategoricalArraysJSONExt 2649.3 ms ✓ WeakRefStrings 1525.8 ms ✓ HostCPUFeatures 2270.7 ms ✓ PolyesterWeave 1308.5 ms ✓ StaticArrayInterface → StaticArrayInterfaceOffsetArraysExt 1763.8 ms ✓ StaticArrayInterface → StaticArrayInterfaceStaticArraysExt 1087.1 ms ✓ CloseOpenIntervals 1264.7 ms ✓ LayoutPointers 4013.9 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 2590.8 ms ✓ HypergeometricFunctions 1354.4 ms ✓ DiffRules 1679.1 ms ✓ Ipopt_jll 5610.3 ms ✓ Interpolations 4824.2 ms ✓ StatsBase 79393.0 ms ✓ DataFrames 1374.4 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 1241.9 ms ✓ FiniteDiff → FiniteDiffSparseArraysExt 1000.4 ms ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt 1268.3 ms ✓ Roots → RootsChainRulesCoreExt 4400.4 ms ✓ SQLite 30701.2 ms ✓ CSV 17983.2 ms ✓ VectorizationBase 2957.1 ms ✓ StatsFuns 9287.7 ms ✓ ForwardDiff 1461.2 ms ✓ Ipopt 2996.7 ms ✓ GeneticVariantBase 5719.8 ms ✓ SLEEFPirates 3529.6 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 1139.9 ms ✓ StatsFuns → StatsFunsInverseFunctionsExt 4729.2 ms ✓ StatsModels 10164.3 ms ✓ Distributions 3768.6 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 1572.3 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 1625.9 ms ✓ Roots → RootsForwardDiffExt 81094.7 ms ✓ MathOptInterface 2963.7 ms ✓ Interpolations → InterpolationsForwardDiffExt 5580.5 ms ✓ BGEN 40842.9 ms ✓ LoopVectorization 3743.2 ms ✓ Distributions → DistributionsTestExt 3767.8 ms ✓ Distributions → DistributionsChainRulesCoreExt 5221.0 ms ✓ HypothesisTests 4298.7 ms ✓ NLSolversBase 9445.4 ms ✓ NLopt 47528.9 ms ✓ Ipopt → IpoptMathOptInterfaceExt 6178.7 ms ✓ LoopVectorization → ForwardDiffExt 5365.3 ms ✓ LoopVectorization → SpecialFunctionsExt 5047.1 ms ✓ VCFTools 6545.7 ms ✓ LineSearches 23362.3 ms ✓ WiSER ✗ SnpArrays 11308.3 ms ✓ Optim 7058.4 ms ✓ Optim → OptimMOIExt ✗ TrajGWAS 197 dependencies successfully precompiled in 912 seconds. 40 already precompiled. 2 dependencies had output during precompilation: ┌ VectorizationBase │ WARNING: Constructor for type "Int16" was extended in `VectorizationBase` without explicit qualification or import. │ NOTE: Assumed "Int16" refers to `Base.Int16`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Int16 end`. │ Hint: To silence the warning, qualify `Int16` as `Base.Int16` in the method signature or explicitly `import Base: Int16`. │ WARNING: Constructor for type "Int64" was extended in `VectorizationBase` without explicit qualification or import. │ NOTE: Assumed "Int64" refers to `Base.Int64`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Int64 end`. │ Hint: To silence the warning, qualify `Int64` as `Base.Int64` in the method signature or explicitly `import Base: Int64`. │ WARNING: Constructor for type "Int32" was extended in `VectorizationBase` without explicit qualification or import. │ NOTE: Assumed "Int32" refers to `Base.Int32`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Int32 end`. │ Hint: To silence the warning, qualify `Int32` as `Base.Int32` in the method signature or explicitly `import Base: Int32`. │ WARNING: Constructor for type "UInt8" was extended in `VectorizationBase` without explicit qualification or import. │ NOTE: Assumed "UInt8" refers to `Base.UInt8`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function UInt8 end`. │ Hint: To silence the warning, qualify `UInt8` as `Base.UInt8` in the method signature or explicitly `import Base: UInt8`. │ WARNING: Constructor for type "UInt16" was extended in `VectorizationBase` without explicit qualification or import. │ NOTE: Assumed "UInt16" refers to `Base.UInt16`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function UInt16 end`. │ Hint: To silence the warning, qualify `UInt16` as `Base.UInt16` in the method signature or explicitly `import Base: UInt16`. │ WARNING: Constructor for type "Float32" was extended in `VectorizationBase` without explicit qualification or import. │ NOTE: Assumed "Float32" refers to `Base.Float32`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Float32 end`. │ Hint: To silence the warning, qualify `Float32` as `Base.Float32` in the method signature or explicitly `import Base: Float32`. │ WARNING: Constructor for type "UInt64" was extended in `VectorizationBase` without explicit qualification or import. │ NOTE: Assumed "UInt64" refers to `Base.UInt64`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function UInt64 end`. │ Hint: To silence the warning, qualify `UInt64` as `Base.UInt64` in the method signature or explicitly `import Base: UInt64`. │ WARNING: Constructor for type "Bool" was extended in `VectorizationBase` without explicit qualification or import. │ NOTE: Assumed "Bool" refers to `Base.Bool`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Bool end`. │ Hint: To silence the warning, qualify `Bool` as `Base.Bool` in the method signature or explicitly `import Base: Bool`. │ WARNING: Constructor for type "Int8" was extended in `VectorizationBase` without explicit qualification or import. │ NOTE: Assumed "Int8" refers to `Base.Int8`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Int8 end`. │ Hint: To silence the warning, qualify `Int8` as `Base.Int8` in the method signature or explicitly `import Base: Int8`. │ WARNING: Constructor for type "Float64" was extended in `VectorizationBase` without explicit qualification or import. │ NOTE: Assumed "Float64" refers to `Base.Float64`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Float64 end`. │ Hint: To silence the warning, qualify `Float64` as `Base.Float64` in the method signature or explicitly `import Base: Float64`. │ WARNING: Constructor for type "UInt32" was extended in `VectorizationBase` without explicit qualification or import. │ NOTE: Assumed "UInt32" refers to `Base.UInt32`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function UInt32 end`. │ Hint: To silence the warning, qualify `UInt32` as `Base.UInt32` in the method signature or explicitly `import Base: UInt32`. │ WARNING: Constructor for type "Float16" was extended in `VectorizationBase` without explicit qualification or import. │ NOTE: Assumed "Float16" refers to `Base.Float16`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Float16 end`. │ Hint: To silence the warning, qualify `Float16` as `Base.Float16` in the method signature or explicitly `import Base: Float16`. └ ┌ VariantCallFormat │ [ Info: Compiling VCF parser... └ ERROR: LoadError: The following 1 direct dependency failed to precompile: TrajGWAS Failed to precompile TrajGWAS [9514c204-b736-47c9-8157-11c3e9e5ab30] to "/home/pkgeval/.julia/compiled/v1.13/TrajGWAS/jl_CIdsev" (ProcessExited(1)). ERROR: LoadError: invalid assignment to constant SnpArrays.AbstractSnpArray. This redefinition may be permitted using the `const` keyword. Stacktrace: [1] top-level scope @ ~/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:48 [2] include(mod::Module, _path::String) @ Base ./Base.jl:311 [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3002 [4] top-level scope @ stdin:5 [5] eval(m::Module, e::Any) @ Core ./boot.jl:489 [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2848 [7] include_string @ ./loading.jl:2858 [inlined] [8] exec_options(opts::Base.JLOptions) @ Base ./client.jl:318 [9] _start() @ Base ./client.jl:553 in expression starting at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:3 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile SnpArrays [4e780e97-f5bf-4111-9dc4-b70aaf691b06] to "/home/pkgeval/.julia/compiled/v1.13/SnpArrays/jl_OerJJM" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3289 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2654 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [7] #invokelatest_gr#235 @ ./reflection.jl:1333 [inlined] [8] invokelatest_gr @ ./reflection.jl:1325 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3860 [10] maybe_cachefile_lock @ ./loading.jl:3857 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2640 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2468 [13] macro expansion @ ./loading.jl:2396 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2360 [16] require @ ./loading.jl:2336 [inlined] [17] eval_import_path @ ./module.jl:36 [inlined] [18] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [19] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [20] top-level scope @ ~/.julia/packages/TrajGWAS/y0Cm6/src/TrajGWAS.jl:3 [21] include(mod::Module, _path::String) @ Base ./Base.jl:311 [22] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3002 [23] top-level scope @ stdin:5 [24] eval(m::Module, e::Any) @ Core ./boot.jl:489 [25] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2848 [26] include_string @ ./loading.jl:2858 [inlined] [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:318 [28] _start() @ Base ./client.jl:553 in expression starting at /home/pkgeval/.julia/packages/TrajGWAS/y0Cm6/src/TrajGWAS.jl:1 in expression starting at stdin: in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 913.47s ################################################################################ # Loading # Loading TrajGWAS... Precompiling packages... ✗ SnpArrays Info Given TrajGWAS was explicitly requested, output will be shown live  ERROR: LoadError: invalid assignment to constant SnpArrays.AbstractSnpArray. This redefinition may be permitted using the `const` keyword. Stacktrace:  [1] top-level scope  @ ~/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:48  [2] include(mod::Module, _path::String)  @ Base ./Base.jl:311  [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)  @ Base ./loading.jl:3002  [4] top-level scope  @ stdin:5  [5] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2848  [7] include_string  @ ./loading.jl:2858 [inlined]  [8] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:318  [9] _start()  @ Base ./client.jl:553 in expression starting at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:3 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile SnpArrays [4e780e97-f5bf-4111-9dc4-b70aaf691b06] to "/home/pkgeval/.julia/compiled/v1.13/SnpArrays/jl_kcUqOs" (ProcessExited(1)). Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)  @ Base ./loading.jl:3289  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()  @ Base ./loading.jl:2654  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94  [5] #mkpidlock#7  @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined]  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115  [7] #invokelatest_gr#235  @ ./reflection.jl:1333 [inlined]  [8] invokelatest_gr  @ ./reflection.jl:1325 [inlined]  [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)  @ Base ./loading.jl:3860  [10] maybe_cachefile_lock  @ ./loading.jl:3857 [inlined]  [11] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2640  [12] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2468  [13] macro expansion  @ ./loading.jl:2396 [inlined]  [14] macro expansion  @ ./lock.jl:376 [inlined]  [15] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2360  [16] require  @ ./loading.jl:2336 [inlined]  [17] eval_import_path  @ ./module.jl:36 [inlined]  [18] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [19] _eval_using(to::Module, path::Expr)  @ Base ./module.jl:137  [20] top-level scope  @ ~/.julia/packages/TrajGWAS/y0Cm6/src/TrajGWAS.jl:3  [21] include(mod::Module, _path::String)  @ Base ./Base.jl:311  [22] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3002  [23] top-level scope  @ stdin:5  [24] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [25] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2848  [26] include_string  @ ./loading.jl:2858 [inlined]  [27] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:318  [28] _start()  @ Base ./client.jl:553 in expression starting at /home/pkgeval/.julia/packages/TrajGWAS/y0Cm6/src/TrajGWAS.jl:1 in expression starting at stdin:5 ✗ TrajGWAS 0 dependencies successfully precompiled in 67 seconds. 237 already precompiled. ERROR: The following 1 direct dependency failed to precompile: TrajGWAS Failed to precompile TrajGWAS [9514c204-b736-47c9-8157-11c3e9e5ab30] to "/home/pkgeval/.julia/compiled/v1.13/TrajGWAS/jl_mYdBXz" (ProcessExited(1)). ERROR: LoadError: invalid assignment to constant SnpArrays.AbstractSnpArray. This redefinition may be permitted using the `const` keyword. Stacktrace: [1] top-level scope @ ~/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:48 [2] include(mod::Module, _path::String) @ Base ./Base.jl:311 [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3002 [4] top-level scope @ stdin:5 [5] eval(m::Module, e::Any) @ Core ./boot.jl:489 [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2848 [7] include_string @ ./loading.jl:2858 [inlined] [8] exec_options(opts::Base.JLOptions) @ Base ./client.jl:318 [9] _start() @ Base ./client.jl:553 in expression starting at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:3 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile SnpArrays [4e780e97-f5bf-4111-9dc4-b70aaf691b06] to "/home/pkgeval/.julia/compiled/v1.13/SnpArrays/jl_kcUqOs" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3289 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2654 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [7] #invokelatest_gr#235 @ ./reflection.jl:1333 [inlined] [8] invokelatest_gr @ ./reflection.jl:1325 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3860 [10] maybe_cachefile_lock @ ./loading.jl:3857 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2640 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2468 [13] macro expansion @ ./loading.jl:2396 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2360 [16] require @ ./loading.jl:2336 [inlined] [17] eval_import_path @ ./module.jl:36 [inlined] [18] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [19] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [20] top-level scope @ ~/.julia/packages/TrajGWAS/y0Cm6/src/TrajGWAS.jl:3 [21] include(mod::Module, _path::String) @ Base ./Base.jl:311 [22] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3002 [23] top-level scope @ stdin:5 [24] eval(m::Module, e::Any) @ Core ./boot.jl:489 [25] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2848 [26] include_string @ ./loading.jl:2858 [inlined] [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:318 [28] _start() @ Base ./client.jl:553 in expression starting at /home/pkgeval/.julia/packages/TrajGWAS/y0Cm6/src/TrajGWAS.jl:1 in expression starting at stdin: Loading failed after 68.73s ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so -g1 --check-bounds=yes --inline=yes --pkgimages=existing -e 'using TrajGWAS'`, ProcessExited(1)) [1] Stacktrace: [1] pipeline_error @ ./process.jl:602 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:517 [3] run(::Cmd) @ Base ./process.jl:514 [4] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:193 [5] include(mod::Module, _path::String) @ Base ./Base.jl:311 [6] exec_options(opts::Base.JLOptions) @ Base ./client.jl:320 [7] _start() @ Base ./client.jl:553 in expression starting at /PkgEval.jl/scripts/evaluate.jl:184 PkgEval failed after 1027.86s: package fails to precompile