Package evaluation of StochasticGene on Julia 1.13.0-DEV.923 (d2bbd0af86*) started at 2025-07-30T22:43:23.313 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.65s ################################################################################ # Installation # Installing StochasticGene... Resolving package versions... Installed CommonWorldInvalidations ──────────── v1.0.0 Installed MKL_jll ───────────────────────────── v2025.2.0+0 Installed OrderedCollections ────────────────── v1.8.1 Installed InlineStrings ─────────────────────── v1.4.4 Installed FastPower ─────────────────────────── v1.1.3 Installed SIMDTypes ─────────────────────────── v0.1.0 Installed MultivariateStats ─────────────────── v0.10.3 Installed OrdinaryDiffEqRosenbrock ──────────── v1.12.0 Installed NonlinearSolveSpectralMethods ─────── v1.2.0 Installed CpuId ─────────────────────────────── v0.3.1 Installed EnzymeCore ────────────────────────── v0.8.12 Installed PreallocationTools ────────────────── v0.4.29 Installed Optim ─────────────────────────────── v1.13.2 Installed OrdinaryDiffEqFIRK ────────────────── v1.13.0 Installed OrdinaryDiffEqExponentialRK ───────── v1.5.0 Installed SentinelArrays ────────────────────── v1.4.8 Installed Compiler ──────────────────────────── v0.1.1 Installed NaNMath ───────────────────────────── v1.1.3 Installed StaticArrayInterface ──────────────── v1.8.0 Installed QuadGK ────────────────────────────── v2.11.2 Installed Revise ────────────────────────────── v3.8.1 Installed OpenSpecFun_jll ───────────────────── v0.5.6+0 Installed OrdinaryDiffEqQPRK ────────────────── v1.1.0 Installed LoweredCodeUtils ──────────────────── v3.4.3 Installed FastBroadcast ─────────────────────── v0.3.5 Installed Tables ────────────────────────────── v1.12.1 Installed NonlinearSolveBase ────────────────── v1.13.0 Installed LinearSolve ───────────────────────── v3.23.0 Installed Arpack ────────────────────────────── v0.5.4 Installed EnumX ─────────────────────────────── v1.0.5 Installed BracketingNonlinearSolve ──────────── v1.3.0 Installed NLSolversBase ─────────────────────── v7.10.0 Installed OrdinaryDiffEqLowOrderRK ──────────── v1.3.0 Installed Jieko ─────────────────────────────── v0.2.1 Installed InverseFunctions ──────────────────── v0.1.17 Installed DiffEqBase ────────────────────────── v6.179.0 Installed NonlinearSolve ────────────────────── v4.10.0 Installed Reexport ──────────────────────────── v1.2.2 Installed Missings ──────────────────────────── v1.2.0 Installed RegistryInstances ─────────────────── v0.1.0 Installed TableTraits ───────────────────────── v1.0.1 Installed MaybeInplace ──────────────────────── v0.1.4 Installed Static ────────────────────────────── v1.2.0 Installed Preferences ───────────────────────── v1.4.3 Installed SortingAlgorithms ─────────────────── v1.2.1 Installed LaTeXStrings ──────────────────────── v1.4.0 Installed OrdinaryDiffEqAdamsBashforthMoulton ─ v1.2.0 Installed OrdinaryDiffEqLinear ──────────────── v1.3.0 Installed Crayons ───────────────────────────── v4.1.1 Installed RecursiveArrayTools ───────────────── v3.36.0 Installed OrdinaryDiffEqNordsieck ───────────── v1.1.0 Installed ADTypes ───────────────────────────── v1.16.0 Installed UnPack ────────────────────────────── v1.0.2 Installed OpenSSH_jll ───────────────────────── v10.0.1+0 Installed DiffResults ───────────────────────── v1.1.0 Installed MacroTools ────────────────────────── v0.5.16 Installed GenericSchur ──────────────────────── v0.5.5 Installed ManualMemory ──────────────────────── v0.1.8 Installed DataStructures ────────────────────── v0.18.22 Installed AbstractTrees ─────────────────────── v0.4.5 Installed FillArrays ────────────────────────── v1.13.0 Installed oneTBB_jll ────────────────────────── v2022.0.0+0 Installed CodecZlib ─────────────────────────── v0.7.8 Installed SciMLJacobianOperators ────────────── v0.1.8 Installed SparseMatrixColorings ─────────────── v0.4.21 Installed ExprTools ─────────────────────────── v0.1.10 Installed ArrayInterface ────────────────────── v7.19.0 Installed StatsBase ─────────────────────────── v0.34.5 Installed DelimitedFiles ────────────────────── v1.9.1 Installed IntelOpenMP_jll ───────────────────── v2025.2.0+0 Installed DataValueInterfaces ───────────────── v1.0.0 Installed LayoutPointers ────────────────────── v0.1.17 Installed CommonSubexpressions ──────────────── v0.3.1 Installed Expat_jll ─────────────────────────── v2.6.5+0 Installed ConcreteStructs ───────────────────── v0.2.3 Installed IrrationalConstants ───────────────── v0.2.4 Installed TruncatedStacktraces ──────────────── v1.4.0 Installed GPUArraysCore ─────────────────────── v0.2.0 Installed OrdinaryDiffEqStabilizedIRK ───────── v1.3.0 Installed IOCapture ─────────────────────────── v0.2.5 Installed Setfield ──────────────────────────── v1.1.2 Installed ArrayLayouts ──────────────────────── v1.11.2 Installed PooledArrays ──────────────────────── v1.4.3 Installed OrdinaryDiffEqPRK ─────────────────── v1.1.0 Installed OrdinaryDiffEqRKN ─────────────────── v1.2.0 Installed OrdinaryDiffEqExtrapolation ───────── v1.5.0 Installed PDMats ────────────────────────────── v0.11.35 Installed LSODA_jll ─────────────────────────── v0.1.2+0 Installed NonlinearSolveQuasiNewton ─────────── v1.7.0 Installed WorkerUtilities ───────────────────── v1.6.1 Installed OrdinaryDiffEqHighOrderRK ─────────── v1.2.0 Installed DocStringExtensions ───────────────── v0.9.5 Installed CompositionsBase ──────────────────── v0.1.2 Installed Moshi ─────────────────────────────── v0.3.7 Installed Rmath_jll ─────────────────────────── v0.5.1+0 Installed VersionParsing ────────────────────── v1.3.0 Installed CommonSolve ───────────────────────── v0.2.4 Installed ForwardDiff ───────────────────────── v1.0.1 Installed ZMQ ───────────────────────────────── v1.4.1 Installed DifferentiationInterface ──────────── v0.7.3 Installed SimpleUnPack ──────────────────────── v1.1.0 Installed BitTwiddlingConvenienceFunctions ──── v0.1.6 Installed AliasTables ───────────────────────── v1.1.3 Installed LineSearch ────────────────────────── v0.1.4 Installed OrdinaryDiffEqStabilizedRK ────────── v1.2.0 Installed IteratorInterfaceExtensions ───────── v1.0.0 Installed FunctionWrappersWrappers ──────────── v0.1.3 Installed RecipesBase ───────────────────────── v1.3.4 Installed DataAPI ───────────────────────────── v1.16.0 Installed SciMLOperators ────────────────────── v1.4.0 Installed InvertedIndices ───────────────────── v1.3.1 Installed OrdinaryDiffEqBDF ─────────────────── v1.7.0 Installed OrdinaryDiffEqSymplecticRK ────────── v1.4.0 Installed Conda ─────────────────────────────── v1.10.2 Installed SciMLStructures ───────────────────── v1.7.0 Installed OrdinaryDiffEq ────────────────────── v6.101.0 Installed StaticArraysCore ──────────────────── v1.4.3 Installed OrdinaryDiffEqLowStorageRK ────────── v1.3.0 Installed FastGaussQuadrature ───────────────── v1.0.2 Installed LSODA ─────────────────────────────── v0.7.5 Installed StaticArrays ──────────────────────── v1.9.14 Installed CodeTracking ──────────────────────── v2.0.0 Installed AbstractFFTs ──────────────────────── v1.5.0 Installed Krylov ────────────────────────────── v0.10.1 Installed StringManipulation ────────────────── v0.4.1 Installed Requires ──────────────────────────── v1.3.1 Installed OrdinaryDiffEqDifferentiation ─────── v1.10.1 Installed FunctionWrappers ──────────────────── v1.1.3 Installed CSV ───────────────────────────────── v0.10.15 Installed OrdinaryDiffEqNonlinearSolve ──────── v1.11.0 Installed LogExpFunctions ───────────────────── v0.3.29 Installed DiffRules ─────────────────────────── v1.15.1 Installed PrettyTables ──────────────────────── v2.4.0 Installed JuliaInterpreter ──────────────────── v0.10.4 Installed Git_jll ───────────────────────────── v2.50.1+0 Installed OrdinaryDiffEqCore ────────────────── v1.26.2 Installed Documenter ────────────────────────── v1.14.1 Installed SciMLBase ─────────────────────────── v2.106.0 Installed Distributions ─────────────────────── v0.25.120 Installed JSON ──────────────────────────────── v0.21.4 Installed NonlinearSolveFirstOrder ──────────── v1.6.0 Installed Rmath ─────────────────────────────── v0.8.0 Installed OrdinaryDiffEqExplicitRK ──────────── v1.1.0 Installed Parsers ───────────────────────────── v2.8.3 Installed FiniteDiff ────────────────────────── v2.27.0 Installed Arpack_jll ────────────────────────── v3.5.1+1 Installed libsodium_jll ─────────────────────── v1.0.21+0 Installed FastClosures ──────────────────────── v0.3.2 Installed CloseOpenIntervals ────────────────── v0.1.13 Installed Polyester ─────────────────────────── v0.7.18 Installed StatsFuns ─────────────────────────── v1.5.0 Installed IJulia ────────────────────────────── v1.29.2 Installed OrdinaryDiffEqIMEXMultistep ───────── v1.4.0 Installed OrdinaryDiffEqFeagin ──────────────── v1.1.0 Installed ZeroMQ_jll ────────────────────────── v4.3.6+0 Installed OrdinaryDiffEqSSPRK ───────────────── v1.3.0 Installed WeakRefStrings ────────────────────── v1.4.2 Installed JLLWrappers ───────────────────────── v1.7.1 Installed DataFrames ────────────────────────── v1.7.0 Installed OrdinaryDiffEqSDIRK ───────────────── v1.4.0 Installed ThreadingUtilities ────────────────── v0.5.5 Installed OrdinaryDiffEqDefault ─────────────── v1.5.0 Installed FilePathsBase ─────────────────────── v0.9.24 Installed Accessors ─────────────────────────── v0.1.42 Installed OrdinaryDiffEqPDIRK ───────────────── v1.3.1 Installed Adapt ─────────────────────────────── v4.3.0 Installed OrdinaryDiffEqVerner ──────────────── v1.3.0 Installed RuntimeGeneratedFunctions ─────────── v0.5.15 Installed HypergeometricFunctions ───────────── v0.3.28 Installed ConstructionBase ──────────────────── v1.6.0 Installed ExponentialUtilities ──────────────── v1.27.0 Installed SymbolicIndexingInterface ─────────── v0.3.42 Installed Compat ────────────────────────────── v4.18.0 Installed PositiveFactorizations ────────────── v0.2.4 Installed StrideArraysCore ──────────────────── v0.5.7 Installed Statistics ────────────────────────── v1.11.1 Installed TranscodingStreams ────────────────── v0.11.3 Installed LazyArrays ────────────────────────── v2.6.2 Installed PrecompileTools ───────────────────── v1.3.2 Installed StatsAPI ──────────────────────────── v1.7.1 Installed TimerOutputs ──────────────────────── v0.5.29 Installed MarkdownAST ───────────────────────── v0.1.2 Installed CPUSummary ────────────────────────── v0.2.6 Installed ExproniconLite ────────────────────── v0.10.14 Installed IfElse ────────────────────────────── v0.1.1 Installed Parameters ────────────────────────── v0.12.3 Installed ChainRulesCore ────────────────────── v1.25.2 Installed SoftGlobalScope ───────────────────── v1.1.0 Installed StochasticGene ────────────────────── v1.5.10 Installed MuladdMacro ───────────────────────── v0.2.4 Installed PtrArrays ─────────────────────────── v1.3.0 Installed LazilyInitializedFields ───────────── v1.3.0 Installed Git ───────────────────────────────── v1.4.0 Installed SimpleNonlinearSolve ──────────────── v2.7.0 Installed FFTW_jll ──────────────────────────── v3.3.11+0 Installed Libiconv_jll ──────────────────────── v1.18.0+0 Installed SpecialFunctions ──────────────────── v2.5.1 Installed LineSearches ──────────────────────── v7.4.0 Installed FFTW ──────────────────────────────── v1.9.0 Installed OrdinaryDiffEqTsit5 ───────────────── v1.2.0 Installed OrdinaryDiffEqFunctionMap ─────────── v1.2.0 Installed PolyesterWeave ────────────────────── v0.2.2 Installed ANSIColoredPrinters ───────────────── v0.0.1 Installing 12 artifacts Installed artifact ZeroMQ 316.1 KiB Installed artifact Expat 271.4 KiB Installed artifact oneTBB 435.6 KiB Installed artifact LSODA 24.9 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact FFTW 2.2 MiB Installed artifact Rmath 121.9 KiB Installed artifact Arpack 147.2 KiB Installed artifact libsodium 1.6 MiB Installed artifact Libiconv 1.9 MiB Installed artifact OpenSSH 4.2 MiB Installed artifact Git 48.8 MiB Updating `~/.julia/environments/v1.13/Project.toml` [a2598c62] + StochasticGene v1.5.10 Updating `~/.julia/environments/v1.13/Manifest.toml` [47edcb42] + ADTypes v1.16.0 [a4c015fc] + ANSIColoredPrinters v0.0.1 [621f4979] + AbstractFFTs v1.5.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [7d9fca2a] + Arpack v0.5.4 [4fba245c] + ArrayInterface v7.19.0 [4c555306] + ArrayLayouts v1.11.2 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [70df07ce] + BracketingNonlinearSolve v1.3.0 [2a0fbf3d] + CPUSummary v0.2.6 [336ed68f] + CSV v0.10.15 [d360d2e6] + ChainRulesCore v1.25.2 [fb6a15b2] + CloseOpenIntervals v0.1.13 [da1fd8a2] + CodeTracking v2.0.0 [944b1d66] + CodecZlib v0.7.8 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.0 [807dbc54] + Compiler v0.1.1 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [8f4d0f93] + Conda v1.10.2 [187b0558] + ConstructionBase v1.6.0 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [2b5f629d] + DiffEqBase v6.179.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.3 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [e30172f5] + Documenter v1.14.1 [4e289a0a] + EnumX v1.0.5 [f151be2c] + EnzymeCore v0.8.12 [d4d017d3] + ExponentialUtilities v1.27.0 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [7a1cc6ca] + FFTW v1.9.0 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [442a2c76] + FastGaussQuadrature v1.0.2 [a4df4552] + FastPower v1.1.3 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.13.0 [6a86dc24] + FiniteDiff v2.27.0 [f6369f11] + ForwardDiff v1.0.1 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [46192b85] + GPUArraysCore v0.2.0 [c145ed77] + GenericSchur v0.5.5 [d7ba0133] + Git v1.4.0 [34004b35] + HypergeometricFunctions v0.3.28 [7073ff75] + IJulia v1.29.2 [b5f81e59] + IOCapture v0.2.5 [615f187c] + IfElse v0.1.1 [842dd82b] + InlineStrings v1.4.4 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v0.21.4 [ae98c720] + Jieko v0.2.1 [aa1ae85d] + JuliaInterpreter v0.10.4 [ba0b0d4f] + Krylov v0.10.1 [7f56f5a3] + LSODA v0.7.5 [b964fa9f] + LaTeXStrings v1.4.0 [10f19ff3] + LayoutPointers v0.1.17 [0e77f7df] + LazilyInitializedFields v1.3.0 [5078a376] + LazyArrays v2.6.2 [87fe0de2] + LineSearch v0.1.4 [d3d80556] + LineSearches v7.4.0 [7ed4a6bd] + LinearSolve v3.23.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [6f1432cf] + LoweredCodeUtils v3.4.3 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [d0879d2d] + MarkdownAST v0.1.2 [bb5d69b7] + MaybeInplace v0.1.4 [e1d29d7a] + Missings v1.2.0 [2e0e35c7] + Moshi v0.3.7 [46d2c3a1] + MuladdMacro v0.2.4 [6f286f6a] + MultivariateStats v0.10.3 [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 [8913a72c] + NonlinearSolve v4.10.0 [be0214bd] + NonlinearSolveBase v1.13.0 [5959db7a] + NonlinearSolveFirstOrder v1.6.0 [9a2c21bd] + NonlinearSolveQuasiNewton v1.7.0 [26075421] + NonlinearSolveSpectralMethods v1.2.0 [429524aa] + Optim v1.13.2 [bac558e1] + OrderedCollections v1.8.1 [1dea7af3] + OrdinaryDiffEq v6.101.0 [89bda076] + OrdinaryDiffEqAdamsBashforthMoulton v1.2.0 [6ad6398a] + OrdinaryDiffEqBDF v1.7.0 [bbf590c4] + OrdinaryDiffEqCore v1.26.2 [50262376] + OrdinaryDiffEqDefault v1.5.0 [4302a76b] + OrdinaryDiffEqDifferentiation v1.10.1 [9286f039] + OrdinaryDiffEqExplicitRK v1.1.0 [e0540318] + OrdinaryDiffEqExponentialRK v1.5.0 [becaefa8] + OrdinaryDiffEqExtrapolation v1.5.0 [5960d6e9] + OrdinaryDiffEqFIRK v1.13.0 [101fe9f7] + OrdinaryDiffEqFeagin v1.1.0 [d3585ca7] + OrdinaryDiffEqFunctionMap v1.2.0 [d28bc4f8] + OrdinaryDiffEqHighOrderRK v1.2.0 [9f002381] + OrdinaryDiffEqIMEXMultistep v1.4.0 [521117fe] + OrdinaryDiffEqLinear v1.3.0 [1344f307] + OrdinaryDiffEqLowOrderRK v1.3.0 [b0944070] + OrdinaryDiffEqLowStorageRK v1.3.0 [127b3ac7] + OrdinaryDiffEqNonlinearSolve v1.11.0 [c9986a66] + OrdinaryDiffEqNordsieck v1.1.0 [5dd0a6cf] + OrdinaryDiffEqPDIRK v1.3.1 [5b33eab2] + OrdinaryDiffEqPRK v1.1.0 [04162be5] + OrdinaryDiffEqQPRK v1.1.0 [af6ede74] + OrdinaryDiffEqRKN v1.2.0 [43230ef6] + OrdinaryDiffEqRosenbrock v1.12.0 [2d112036] + OrdinaryDiffEqSDIRK v1.4.0 [669c94d9] + OrdinaryDiffEqSSPRK v1.3.0 [e3e12d00] + OrdinaryDiffEqStabilizedIRK v1.3.0 [358294b1] + OrdinaryDiffEqStabilizedRK v1.2.0 [fa646aed] + OrdinaryDiffEqSymplecticRK v1.4.0 [b1df2697] + OrdinaryDiffEqTsit5 v1.2.0 [79d7bb75] + OrdinaryDiffEqVerner v1.3.0 [90014a1f] + PDMats v0.11.35 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [f517fe37] + Polyester v0.7.18 [1d0040c9] + PolyesterWeave v0.2.2 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 [d236fae5] + PreallocationTools v0.4.29 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.36.0 [189a3867] + Reexport v1.2.2 [2792f1a3] + RegistryInstances v0.1.0 [ae029012] + Requires v1.3.1 [295af30f] + Revise v3.8.1 [79098fc4] + Rmath v0.8.0 [7e49a35a] + RuntimeGeneratedFunctions v0.5.15 [94e857df] + SIMDTypes v0.1.0 [0bca4576] + SciMLBase v2.106.0 [19f34311] + SciMLJacobianOperators v0.1.8 [c0aeaf25] + SciMLOperators v1.4.0 [53ae85a6] + SciMLStructures v1.7.0 [91c51154] + SentinelArrays v1.4.8 [efcf1570] + Setfield v1.1.2 [727e6d20] + SimpleNonlinearSolve v2.7.0 [ce78b400] + SimpleUnPack v1.1.0 [b85f4697] + SoftGlobalScope v1.1.0 [a2af1166] + SortingAlgorithms v1.2.1 [0a514795] + SparseMatrixColorings v0.4.21 [276daf66] + SpecialFunctions v2.5.1 [aedffcd0] + Static v1.2.0 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.14 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [4c63d2b9] + StatsFuns v1.5.0 [a2598c62] + StochasticGene v1.5.10 [7792a7ef] + StrideArraysCore v0.5.7 [892a3eda] + StringManipulation v0.4.1 [2efcf032] + SymbolicIndexingInterface v0.3.42 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [8290d209] + ThreadingUtilities v0.5.5 [a759f4b9] + TimerOutputs v0.5.29 [3bb67fe8] + TranscodingStreams v0.11.3 [781d530d] + TruncatedStacktraces v1.4.0 [3a884ed6] + UnPack v1.0.2 [81def892] + VersionParsing v1.3.0 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [c2297ded] + ZMQ v1.4.1 ⌅ [68821587] + Arpack_jll v3.5.1+1 [2e619515] + Expat_jll v2.6.5+0 [f5851436] + FFTW_jll v3.3.11+0 [f8c6e375] + Git_jll v2.50.1+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [aae0fff6] + LSODA_jll v0.1.2+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [856f044c] + MKL_jll v2025.2.0+0 [9bd350c2] + OpenSSH_jll v10.0.1+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [8f1865be] + ZeroMQ_jll v4.3.6+0 [a9144af2] + libsodium_jll v1.0.21+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.7.15 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.5.1+0 [efcefdf7] + PCRE2_jll v10.45.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Building Conda ─→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/b19db3927f0db4151cb86d073689f2428e524576/build.log` Building IJulia → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/016d15e5d186b2dd59ff96e05cb13eea542b54f6/build.log` Installation completed after 71.01s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4628.4 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 26 already precompiled. Precompiling package dependencies... Precompilation completed after 1821.98s ################################################################################ # Testing # Testing StochasticGene Status `/tmp/jl_b4cL3Z/Project.toml` [336ed68f] CSV v0.10.15 [a93c6f00] DataFrames v1.7.0 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.120 [e30172f5] Documenter v1.14.1 [7a1cc6ca] FFTW v1.9.0 [7073ff75] IJulia v1.29.2 [682c06a0] JSON v0.21.4 [7f56f5a3] LSODA v0.7.5 [6f286f6a] MultivariateStats v0.10.3 [429524aa] Optim v1.13.2 [1dea7af3] OrdinaryDiffEq v6.101.0 [295af30f] Revise v3.8.1 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.5 [a2598c62] StochasticGene v1.5.10 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [37e2e46d] LinearAlgebra v1.13.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_b4cL3Z/Manifest.toml` [47edcb42] ADTypes v1.16.0 [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [7d9fca2a] Arpack v0.5.4 [4fba245c] ArrayInterface v7.19.0 [4c555306] ArrayLayouts v1.11.2 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [70df07ce] BracketingNonlinearSolve v1.3.0 [2a0fbf3d] CPUSummary v0.2.6 [336ed68f] CSV v0.10.15 [d360d2e6] ChainRulesCore v1.25.2 [fb6a15b2] CloseOpenIntervals v0.1.13 [da1fd8a2] CodeTracking v2.0.0 [944b1d66] CodecZlib v0.7.8 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.0 [807dbc54] Compiler v0.1.1 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [8f4d0f93] Conda v1.10.2 [187b0558] ConstructionBase v1.6.0 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [2b5f629d] DiffEqBase v6.179.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.3 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 [e30172f5] Documenter v1.14.1 [4e289a0a] EnumX v1.0.5 [f151be2c] EnzymeCore v0.8.12 [d4d017d3] ExponentialUtilities v1.27.0 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [7a1cc6ca] FFTW v1.9.0 [7034ab61] FastBroadcast v0.3.5 [9aa1b823] FastClosures v0.3.2 [442a2c76] FastGaussQuadrature v1.0.2 [a4df4552] FastPower v1.1.3 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.13.0 [6a86dc24] FiniteDiff v2.27.0 [f6369f11] ForwardDiff v1.0.1 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [46192b85] GPUArraysCore v0.2.0 [c145ed77] GenericSchur v0.5.5 [d7ba0133] Git v1.4.0 [34004b35] HypergeometricFunctions v0.3.28 [7073ff75] IJulia v1.29.2 [b5f81e59] IOCapture v0.2.5 [615f187c] IfElse v0.1.1 [842dd82b] InlineStrings v1.4.4 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v0.21.4 [ae98c720] Jieko v0.2.1 [aa1ae85d] JuliaInterpreter v0.10.4 [ba0b0d4f] Krylov v0.10.1 [7f56f5a3] LSODA v0.7.5 [b964fa9f] LaTeXStrings v1.4.0 [10f19ff3] LayoutPointers v0.1.17 [0e77f7df] LazilyInitializedFields v1.3.0 [5078a376] LazyArrays v2.6.2 [87fe0de2] LineSearch v0.1.4 [d3d80556] LineSearches v7.4.0 [7ed4a6bd] LinearSolve v3.23.0 [2ab3a3ac] LogExpFunctions v0.3.29 [6f1432cf] LoweredCodeUtils v3.4.3 [1914dd2f] MacroTools v0.5.16 [d125e4d3] ManualMemory v0.1.8 [d0879d2d] MarkdownAST v0.1.2 [bb5d69b7] MaybeInplace v0.1.4 [e1d29d7a] Missings v1.2.0 [2e0e35c7] Moshi v0.3.7 [46d2c3a1] MuladdMacro v0.2.4 [6f286f6a] MultivariateStats v0.10.3 [d41bc354] NLSolversBase v7.10.0 [77ba4419] NaNMath v1.1.3 [8913a72c] NonlinearSolve v4.10.0 [be0214bd] NonlinearSolveBase v1.13.0 [5959db7a] NonlinearSolveFirstOrder v1.6.0 [9a2c21bd] NonlinearSolveQuasiNewton v1.7.0 [26075421] NonlinearSolveSpectralMethods v1.2.0 [429524aa] Optim v1.13.2 [bac558e1] OrderedCollections v1.8.1 [1dea7af3] OrdinaryDiffEq v6.101.0 [89bda076] OrdinaryDiffEqAdamsBashforthMoulton v1.2.0 [6ad6398a] OrdinaryDiffEqBDF v1.7.0 [bbf590c4] OrdinaryDiffEqCore v1.26.2 [50262376] OrdinaryDiffEqDefault v1.5.0 [4302a76b] OrdinaryDiffEqDifferentiation v1.10.1 [9286f039] OrdinaryDiffEqExplicitRK v1.1.0 [e0540318] OrdinaryDiffEqExponentialRK v1.5.0 [becaefa8] OrdinaryDiffEqExtrapolation v1.5.0 [5960d6e9] OrdinaryDiffEqFIRK v1.13.0 [101fe9f7] OrdinaryDiffEqFeagin v1.1.0 [d3585ca7] OrdinaryDiffEqFunctionMap v1.2.0 [d28bc4f8] OrdinaryDiffEqHighOrderRK v1.2.0 [9f002381] OrdinaryDiffEqIMEXMultistep v1.4.0 [521117fe] OrdinaryDiffEqLinear v1.3.0 [1344f307] OrdinaryDiffEqLowOrderRK v1.3.0 [b0944070] OrdinaryDiffEqLowStorageRK v1.3.0 [127b3ac7] OrdinaryDiffEqNonlinearSolve v1.11.0 [c9986a66] OrdinaryDiffEqNordsieck v1.1.0 [5dd0a6cf] OrdinaryDiffEqPDIRK v1.3.1 [5b33eab2] OrdinaryDiffEqPRK v1.1.0 [04162be5] OrdinaryDiffEqQPRK v1.1.0 [af6ede74] OrdinaryDiffEqRKN v1.2.0 [43230ef6] OrdinaryDiffEqRosenbrock v1.12.0 [2d112036] OrdinaryDiffEqSDIRK v1.4.0 [669c94d9] OrdinaryDiffEqSSPRK v1.3.0 [e3e12d00] OrdinaryDiffEqStabilizedIRK v1.3.0 [358294b1] OrdinaryDiffEqStabilizedRK v1.2.0 [fa646aed] OrdinaryDiffEqSymplecticRK v1.4.0 [b1df2697] OrdinaryDiffEqTsit5 v1.2.0 [79d7bb75] OrdinaryDiffEqVerner v1.3.0 [90014a1f] PDMats v0.11.35 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [f517fe37] Polyester v0.7.18 [1d0040c9] PolyesterWeave v0.2.2 [2dfb63ee] PooledArrays v1.4.3 [85a6dd25] PositiveFactorizations v0.2.4 [d236fae5] PreallocationTools v0.4.29 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [3cdcf5f2] RecipesBase v1.3.4 [731186ca] RecursiveArrayTools v3.36.0 [189a3867] Reexport v1.2.2 [2792f1a3] RegistryInstances v0.1.0 [ae029012] Requires v1.3.1 [295af30f] Revise v3.8.1 [79098fc4] Rmath v0.8.0 [7e49a35a] RuntimeGeneratedFunctions v0.5.15 [94e857df] SIMDTypes v0.1.0 [0bca4576] SciMLBase v2.106.0 [19f34311] SciMLJacobianOperators v0.1.8 [c0aeaf25] SciMLOperators v1.4.0 [53ae85a6] SciMLStructures v1.7.0 [91c51154] SentinelArrays v1.4.8 [efcf1570] Setfield v1.1.2 [727e6d20] SimpleNonlinearSolve v2.7.0 [ce78b400] SimpleUnPack v1.1.0 [b85f4697] SoftGlobalScope v1.1.0 [a2af1166] SortingAlgorithms v1.2.1 [0a514795] SparseMatrixColorings v0.4.21 [276daf66] SpecialFunctions v2.5.1 [aedffcd0] Static v1.2.0 [0d7ed370] StaticArrayInterface v1.8.0 [90137ffa] StaticArrays v1.9.14 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.5 [4c63d2b9] StatsFuns v1.5.0 [a2598c62] StochasticGene v1.5.10 [7792a7ef] StrideArraysCore v0.5.7 [892a3eda] StringManipulation v0.4.1 [2efcf032] SymbolicIndexingInterface v0.3.42 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [8290d209] ThreadingUtilities v0.5.5 [a759f4b9] TimerOutputs v0.5.29 [3bb67fe8] TranscodingStreams v0.11.3 [781d530d] TruncatedStacktraces v1.4.0 [3a884ed6] UnPack v1.0.2 [81def892] VersionParsing v1.3.0 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [c2297ded] ZMQ v1.4.1 ⌅ [68821587] Arpack_jll v3.5.1+1 [2e619515] Expat_jll v2.6.5+0 [f5851436] FFTW_jll v3.3.11+0 [f8c6e375] Git_jll v2.50.1+0 [1d5cc7b8] IntelOpenMP_jll v2025.2.0+0 [aae0fff6] LSODA_jll v0.1.2+0 [94ce4f54] Libiconv_jll v1.18.0+0 [856f044c] MKL_jll v2025.2.0+0 [9bd350c2] OpenSSH_jll v10.0.1+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [8f1865be] ZeroMQ_jll v4.3.6+0 [a9144af2] libsodium_jll v1.0.21+0 [1317d2d5] oneTBB_jll v2022.0.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.7.15 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.1+0 [efcefdf7] PCRE2_jll v10.45.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Sampling Histogram count: 6774.0 Sampling Sampling Sampling ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1437 running 1 of 1 signal (10): User defined signal 1 colamd_l at /opt/julia/bin/../lib/julia/libcolamd.so.3 (unknown line) cholmod_l_colamd at /opt/julia/bin/../lib/julia/libcholmod.so (unknown line) _Z12spqr_1colamdIdlEiidT0_P21cholmod_sparse_structPPS0_S4_S4_PS2_S3_S3_P21cholmod_common_struct at /opt/julia/bin/../lib/julia/libspqr.so.4 (unknown line) _Z12spqr_1factorIdlEP27SuiteSparseQR_factorizationIT_T0_EidS2_iP21cholmod_sparse_structS2_PS2_S7_PS1_P21cholmod_common_struct at /opt/julia/bin/../lib/julia/libspqr.so.4 (unknown line) _Z13SuiteSparseQRIdlET0_idS0_iP21cholmod_sparse_structS2_P20cholmod_dense_structPS2_PS4_S5_PPS0_S5_S8_S6_P21cholmod_common_struct at /opt/julia/bin/../lib/julia/libspqr.so.4 (unknown line) SuiteSparseQR_C at /source/usr/share/julia/stdlib/v1.13/SparseArrays/src/solvers/wrappers.jl:2167 unknown function (ip: 0x74558b6f08bf) at (unknown file) _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 _qr! at /source/usr/share/julia/stdlib/v1.13/SparseArrays/src/solvers/spqr.jl:55 #qr#2 at /source/usr/share/julia/stdlib/v1.13/SparseArrays/src/solvers/spqr.jl:203 unknown function (ip: 0x74558b6e54ce) at (unknown file) _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 qr at /source/usr/share/julia/stdlib/v1.13/SparseArrays/src/solvers/spqr.jl:195 normalized_nullspace at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/chemical_master.jl:285 steady_state at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/chemical_master.jl:25 [inlined] steady_state at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/chemical_master.jl:22 unknown function (ip: 0x74558b6dbbba) at (unknown file) _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 predictedarray at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/likelihoods.jl:773 unknown function (ip: 0x745558b98914) at (unknown file) _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 predictedarray at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/likelihoods.jl:635 predictedfn at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/likelihoods.jl:548 loglikelihood at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/likelihoods.jl:449 mhstep at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/metropolis_hastings.jl:552 unknown function (ip: 0x745558ba7506) at (unknown file) _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 sample at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/metropolis_hastings.jl:459 sample at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/metropolis_hastings.jl:450 unknown function (ip: 0x745558b9ebc6) at (unknown file) _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 metropolis_hastings at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/metropolis_hastings.jl:313 run_mh at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/metropolis_hastings.jl:128 [inlined] run_mh at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/metropolis_hastings.jl:151 #test_fit_rnadwelltime#190 at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/test.jl:243 test_fit_rnadwelltime at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/test.jl:237 unknown function (ip: 0x745558b8161f) at (unknown file) _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 jl_apply at /source/src/julia.h:2350 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:708 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:773 jl_toplevel_eval_flex at /source/src/toplevel.c:713 ijl_toplevel_eval at /source/src/toplevel.c:785 ijl_toplevel_eval_in at /source/src/toplevel.c:830 eval at ./boot.jl:489 include_string at ./loading.jl:2848 _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 _include at ./loading.jl:2908 include at ./Base.jl:312 IncludeInto at ./Base.jl:313 jfptr_IncludeInto_65131.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 jl_apply at /source/src/julia.h:2350 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:708 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:773 jl_toplevel_eval_flex at /source/src/toplevel.c:713 ijl_toplevel_eval at /source/src/toplevel.c:785 ijl_toplevel_eval_in at /source/src/toplevel.c:830 eval at ./boot.jl:489 exec_options at ./client.jl:286 _start at ./client.jl:553 jfptr__start_33249.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 jl_apply at /source/src/julia.h:2350 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x74558ca10249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1192 wait_forever at ./task.jl:1129 jfptr_wait_forever_24053.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 jl_apply at /source/src/julia.h:2350 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007df8817f91e0 Total snapshots: 397. Utilization: 0% ╎397 @Base/task.jl:1129 wait_forever() 396╎ 397 @Base/task.jl:1192 wait() [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1192 wait_forever at ./task.jl:1129 jfptr_wait_forever_24053.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 jl_apply at /source/src/julia.h:2350 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) Allocations: 27824968 (Pool: 27824030; Big: 938); GC: 41 [1437] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/test/runtests.jl:11 getindex at ./essentials.jl:967 [inlined] getindex at ./subarray.jl:339 [inlined] searchsortedfirst at ./sort.jl:192 [inlined] searchsortedfirst at ./sort.jl:308 [inlined] #searchsortedfirst#5 at ./sort.jl:310 [inlined] searchsortedfirst at ./sort.jl:310 [inlined] getindex at /source/usr/share/julia/stdlib/v1.13/SparseArrays/src/sparsevector.jl:712 normalized_nullspace at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/chemical_master.jl:290 steady_state at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/chemical_master.jl:25 [inlined] steady_state at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/chemical_master.jl:22 unknown function (ip: 0x74558b6dbbba) at (unknown file) _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 predictedarray at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/likelihoods.jl:773 unknown function (ip: 0x745558b98914) at (unknown file) _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 predictedarray at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/likelihoods.jl:635 predictedfn at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/likelihoods.jl:548 loglikelihood at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/likelihoods.jl:449 mhstep at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/metropolis_hastings.jl:552 unknown function (ip: 0x745558ba7506) at (unknown file) _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 sample at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/metropolis_hastings.jl:459 sample at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/metropolis_hastings.jl:450 unknown function (ip: 0x745558b9ebc6) at (unknown file) _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 metropolis_hastings at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/metropolis_hastings.jl:313 run_mh at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/metropolis_hastings.jl:128 [inlined] run_mh at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/metropolis_hastings.jl:151 #test_fit_rnadwelltime#190 at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/test.jl:243 test_fit_rnadwelltime at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/test.jl:237 unknown function (ip: 0x745558b8161f) at (unknown file) _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 jl_apply at /source/src/julia.h:2350 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:708 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:773 jl_toplevel_eval_flex at /source/src/toplevel.c:713 ijl_toplevel_eval at /source/src/toplevel.c:785 ijl_toplevel_eval_in at /source/src/toplevel.c:830 eval at ./boot.jl:489 include_string at ./loading.jl:2848 _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 _include at ./loading.jl:2908 include at ./Base.jl:312 IncludeInto at ./Base.jl:313 jfptr_IncludeInto_65131.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 jl_apply at /source/src/julia.h:2350 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:708 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:773 jl_toplevel_eval_flex at /source/src/toplevel.c:713 ijl_toplevel_eval at /source/src/toplevel.c:785 ijl_toplevel_eval_in at /source/src/toplevel.c:830 eval at ./boot.jl:489 exec_options at ./client.jl:286 _start at ./client.jl:553 jfptr__start_33249.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 jl_apply at /source/src/julia.h:2350 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x74558ca10249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) Allocations: 3050094711 (Pool: 3050093821; Big: 890); GC: 5323 PkgEval terminated after 2721.7s: test duration exceeded the time limit