Package evaluation of Stheno on Julia 1.13.0-DEV.923 (d2bbd0af86*) started at 2025-07-30T14:12:19.037 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.75s ################################################################################ # Installation # Installing Stheno... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [8188c328] + Stheno v0.8.2 Updating `~/.julia/environments/v1.13/Manifest.toml` [99985d1d] + AbstractGPs v0.5.24 [66dad0bd] + AliasTables v1.1.3 [4c555306] + ArrayLayouts v1.11.2 ⌅ [8e7c35d0] + BlockArrays v0.16.43 [d360d2e6] + ChainRulesCore v1.25.2 [34da2185] + Compat v4.18.0 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.13.0 [d9f16b24] + Functors v0.5.2 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.1 [ec8451be] + KernelFunctions v0.10.65 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [90137ffa] + StaticArrays v1.9.14 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [4c63d2b9] + StatsFuns v1.5.0 [8188c328] + Stheno v0.8.2 [62fd8b95] + TensorCore v0.1.1 [700de1a5] + ZygoteRules v0.2.7 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.13.1+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.91s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 55.31s ################################################################################ # Testing # Testing Stheno Status `/tmp/jl_fp1DwL/Project.toml` ⌅ [e30172f5] Documenter v0.27.25 [26cc04aa] FiniteDifferences v0.12.32 [10745b16] Statistics v1.11.1 [8188c328] Stheno v0.8.2 [a759f4b9] TimerOutputs v0.5.29 ⌅ [e88e6eb3] Zygote v0.6.77 [37e2e46d] LinearAlgebra v1.13.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_fp1DwL/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [99985d1d] AbstractGPs v0.5.24 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4c555306] ArrayLayouts v1.11.2 [a9b6321e] Atomix v1.1.1 ⌅ [8e7c35d0] BlockArrays v0.16.43 [fa961155] CEnum v0.5.0 [082447d4] ChainRules v1.72.5 [d360d2e6] ChainRulesCore v1.25.2 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.0 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 ⌅ [e30172f5] Documenter v0.27.25 [e2ba6199] ExprTools v0.1.10 [1a297f60] FillArrays v1.13.0 [26cc04aa] FiniteDifferences v0.12.32 [f6369f11] ForwardDiff v1.0.1 [d9f16b24] Functors v0.5.2 [0c68f7d7] GPUArrays v11.2.3 [46192b85] GPUArraysCore v0.2.0 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [b5f81e59] IOCapture v0.2.5 [7869d1d1] IRTools v0.4.15 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v0.21.4 [63c18a36] KernelAbstractions v0.9.38 [ec8451be] KernelFunctions v0.10.65 [929cbde3] LLVM v9.4.2 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [69de0a69] Parsers v2.8.3 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [708f8203] Richardson v1.4.2 [79098fc4] Rmath v0.8.0 [7e506255] ScopedValues v1.4.0 [a2af1166] SortingAlgorithms v1.2.1 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.5.1 [90137ffa] StaticArrays v1.9.14 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.5 [4c63d2b9] StatsFuns v1.5.0 [8188c328] Stheno v0.8.2 [09ab397b] StructArrays v0.7.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [a759f4b9] TimerOutputs v0.5.29 [013be700] UnsafeAtomics v0.3.0 ⌅ [e88e6eb3] Zygote v0.6.77 [700de1a5] ZygoteRules v0.2.7 [dad2f222] LLVMExtra_jll v0.0.37+2 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.7.15 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.1+0 [efcefdf7] PCRE2_jll v10.45.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 44829.6 ms ✓ Stheno 1 dependency successfully precompiled in 46 seconds. 79 already precompiled. Precompiling packages... 9069.4 ms ✓ Documenter 1 dependency successfully precompiled in 9 seconds. 29 already precompiled. Precompiling packages... 2942.2 ms ✓ FiniteDifferences 1 dependency successfully precompiled in 3 seconds. 18 already precompiled. Precompiling packages... 1604.4 ms ✓ StructArrays → StructArraysStaticArraysExt 12559.6 ms ✓ ChainRules 8439.4 ms ✓ KernelAbstractions 9404.2 ms ✓ ForwardDiff 3137.3 ms ✓ KernelAbstractions → SparseArraysExt 2569.8 ms ✓ KernelAbstractions → LinearAlgebraExt 2636.4 ms ✓ StructArrays → StructArraysGPUArraysCoreExt 3942.8 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 15112.0 ms ✓ GPUArrays 64759.4 ms ✓ Zygote 10 dependencies successfully precompiled in 125 seconds. 95 already precompiled. Precompiling packages... 8879.0 ms ✓ Zygote → ZygoteDistancesExt 1 dependency successfully precompiled in 10 seconds. 109 already precompiled. WARNING: Method definition zero(KernelFunctions.ColVecs{T, TX, S} where S where TX<:AbstractArray{T, 2} where T) in module KernelFunctions at /home/pkgeval/.julia/packages/KernelFunctions/A0P7n/src/utils.jl:96 overwritten in module Main at /home/pkgeval/.julia/packages/Stheno/ZSwgx/test/test_util.jl:54. gp: affine_transformations: doctests WARNING: Detected access to binding `Stheno.##docmeta#284` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter.Utilities ~/.julia/packages/Documenter/bYYzK/src/Utilities/Utilities.jl:822 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. [ Info: Skipped ExpandTemplates step (doctest only). [ Info: Skipped CrossReferences step (doctest only). [ Info: Skipped CheckDocument step (doctest only). [ Info: Skipped Populate step (doctest only). [ Info: Skipped RenderDocument step (doctest only). Test Summary: | Pass Total Time Stheno | 1179 1179 18m46.5s ───────────────────────────────────────────────────────────────────────────────────────────────────── Time Allocations ─────────────────────── ──────────────────────── Tot / % measured: 1145s / 98.3% 28.9GiB / 99.3% Section ncalls time %tot avg alloc %tot avg ───────────────────────────────────────────────────────────────────────────────────────────────────── affine_transformations 1 724s 64.3% 724s 20.1GiB 70.2% 20.1GiB addition 1 399s 35.4% 399s 11.7GiB 40.9% 11.7GiB Standardised Tests (correlated sum) 1 212s 18.8% 212s 6.38GiB 22.3% 6.38GiB adj_ad 9 23.9s 2.1% 2.65s 1.01GiB 3.5% 115MiB adj_fd 9 9.21s 0.8% 1.02s 311MiB 1.1% 34.6MiB Standardised Tests (independent sum) 1 137s 12.2% 137s 5.03GiB 17.5% 5.03GiB adj_ad 9 24.9s 2.2% 2.77s 1.22GiB 4.3% 139MiB adj_fd 9 10.4s 0.9% 1.16s 295MiB 1.0% 32.8MiB Correlated GPs 1 46.8s 4.2% 46.8s 274MiB 0.9% 274MiB Consistency Tests 1 19.1s 1.7% 19.1s 118MiB 0.4% 118MiB Verify mean / kernel numerically 1 2.89s 0.3% 2.89s 39.4MiB 0.1% 39.4MiB Consistency Tests 1 1.63s 0.1% 1.63s 12.3MiB 0.0% 12.3MiB product 1 152s 13.5% 152s 3.90GiB 13.6% 3.90GiB multiply by function 1 88.0s 7.8% 88.0s 2.08GiB 7.2% 2.08GiB Diff Tests 1 49.1s 4.4% 49.1s 1.57GiB 5.5% 1.57GiB adj_ad 9 19.2s 1.7% 2.13s 864MiB 2.9% 96.0MiB adj_fd 9 5.78s 0.5% 643ms 110MiB 0.4% 12.3MiB Consistency Tests 1 6.20s 0.6% 6.20s 101MiB 0.3% 101MiB multiply by constant 1 64.4s 5.7% 64.4s 1.82GiB 6.3% 1.82GiB Diff Tests 1 48.3s 4.3% 48.3s 1.77GiB 6.2% 1.77GiB adj_ad 9 15.6s 1.4% 1.74s 790MiB 2.7% 87.8MiB adj_fd 9 10.4s 0.9% 1.16s 289MiB 1.0% 32.1MiB Consistency Tests 1 3.95s 0.4% 3.95s 17.4MiB 0.1% 17.4MiB GP mul errors 1 13.3ms 0.0% 13.3ms 40.0KiB 0.0% 40.0KiB compose 1 82.5s 7.3% 82.5s 2.31GiB 8.1% 2.31GiB general 1 50.4s 4.5% 50.4s 1.48GiB 5.2% 1.48GiB Diff Tests 1 44.8s 4.0% 44.8s 1.44GiB 5.0% 1.44GiB adj_ad 9 14.4s 1.3% 1.60s 700MiB 2.4% 77.8MiB adj_fd 9 5.65s 0.5% 628ms 109MiB 0.4% 12.1MiB Consistency Tests 1 4.18s 0.4% 4.18s 34.1MiB 0.1% 34.1MiB Stretch 1 26.0s 2.3% 26.0s 744MiB 2.5% 744MiB scalar stretch 1 25.2s 2.2% 25.2s 731MiB 2.5% 731MiB scalar input 1 24.3s 2.2% 24.3s 727MiB 2.5% 727MiB adj_fd 9 8.90s 0.8% 989ms 277MiB 0.9% 30.8MiB adj_ad 9 3.28s 0.3% 365ms 139MiB 0.5% 15.5MiB vector input 1 833ms 0.1% 833ms 3.19MiB 0.0% 3.19MiB Vector stretch 1 650ms 0.1% 650ms 9.78MiB 0.0% 9.78MiB Matrix stretch 1 141ms 0.0% 141ms 2.96MiB 0.0% 2.96MiB Shift 1 3.18s 0.3% 3.18s 39.4MiB 0.1% 39.4MiB Shift{Vector{Float64}} 1 1.71s 0.2% 1.71s 14.1MiB 0.0% 14.1MiB Shift{Float64} 1 1.48s 0.1% 1.48s 25.2MiB 0.1% 25.2MiB Select 1 1.67s 0.1% 1.67s 31.8MiB 0.1% 31.8MiB evaluation 1 728ms 0.1% 728ms 20.2MiB 0.1% 20.2MiB idx isa Vector 1 548ms 0.0% 548ms 7.68MiB 0.0% 7.68MiB idx isa Integer 1 391ms 0.0% 391ms 3.88MiB 0.0% 3.88MiB Periodic 1 1.28s 0.1% 1.28s 33.1MiB 0.1% 33.1MiB cross 1 32.0s 2.8% 32.0s 1.36GiB 4.7% 1.36GiB block arrays 1 17.2s 1.5% 17.2s 768MiB 2.6% 768MiB Stheno._collect ∘ _mortar 1 14.5s 1.3% 14.5s 658MiB 2.2% 658MiB BlockMatrix 1 7.56s 0.7% 7.56s 365MiB 1.2% 365MiB adj_fd 1 984ms 0.1% 984ms 111MiB 0.4% 111MiB adj_ad 1 59.8ms 0.0% 59.8ms 2.35MiB 0.0% 2.35MiB BlockVector 1 6.90s 0.6% 6.90s 293MiB 1.0% 293MiB adj_fd 1 850ms 0.1% 850ms 12.3MiB 0.0% 12.3MiB adj_ad 1 242ms 0.0% 242ms 15.6MiB 0.1% 15.6MiB fdm stuff 1 2.71s 0.2% 2.71s 109MiB 0.4% 109MiB Correctness tests 1 8.66s 0.8% 8.66s 392MiB 1.3% 392MiB Standardised Tests 1 6.19s 0.6% 6.19s 231MiB 0.8% 231MiB gp 1 194s 17.2% 194s 4.35GiB 15.2% 4.35GiB sparse gp 1 20.8s 1.8% 20.8s 380MiB 1.3% 380MiB SparseFiniteGP inference 1 15.3s 1.4% 15.3s 267MiB 0.9% 267MiB SparseFiniteGP methods 1 5.02s 0.4% 5.02s 107MiB 0.4% 107MiB SparseFiniteGP Constructors 1 423ms 0.0% 423ms 4.08MiB 0.0% 4.08MiB adj_ad 2 20.5s 1.8% 10.2s 816MiB 2.8% 408MiB gp 1 15.3s 1.4% 15.3s 251MiB 0.9% 251MiB GP 1 15.0s 1.3% 15.0s 248MiB 0.8% 248MiB independent GPs 1 348ms 0.0% 348ms 2.59MiB 0.0% 2.59MiB wrapped AbstractGP 1 14.1ms 0.0% 14.1ms 286KiB 0.0% 286KiB adj_fd 2 2.60s 0.2% 1.30s 41.0MiB 0.1% 20.5MiB derived_gp 1 146μs 0.0% 146μs 1.59KiB 0.0% 1.59KiB gaussian_process_probabilistic_programme 1 131s 11.7% 131s 2.23GiB 7.8% 2.23GiB Zygote 1 26.1s 2.3% 26.1s 0.96GiB 3.4% 0.96GiB nested gppp 1 14.9s 1.3% 14.9s 85.1MiB 0.3% 85.1MiB External Consistency 1 14.1s 1.3% 14.1s 93.1MiB 0.3% 93.1MiB split 1 636ms 0.1% 636ms 11.6MiB 0.0% 11.6MiB gppp macro 1 57.3ms 0.0% 57.3ms 567KiB 0.0% 567KiB doctests 1 69.4s 6.2% 69.4s 1.70GiB 5.9% 1.70GiB BlockData 1 7.40s 0.7% 7.40s 258MiB 0.9% 258MiB vcat(::GPPPInput...) 1 2.31s 0.2% 2.31s 98.2MiB 0.3% 98.2MiB ───────────────────────────────────────────────────────────────────────────────────────────────────── Testing Stheno tests passed Testing completed after 1353.54s PkgEval succeeded after 1439.43s