Package evaluation of JuliaBUGS on Julia 1.13.0-DEV.923 (d2bbd0af86*) started at 2025-07-30T18:21:30.376 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 11.08s ################################################################################ # Installation # Installing JuliaBUGS... Resolving package versions... Installed CommonSolve ───────────────── v0.2.4 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed MacroTools ────────────────── v0.5.16 Installed MicroCollections ──────────── v0.2.0 Installed CompositionsBase ──────────── v0.1.2 Installed DefineSingletons ──────────── v0.1.2 Installed OpenSSH_jll ───────────────── v10.0.1+0 Installed ConstructionBase ──────────── v1.6.0 Installed HypergeometricFunctions ───── v0.3.28 Installed AbstractTrees ─────────────── v0.4.5 Installed FillArrays ────────────────── v1.13.0 Installed DataStructures ────────────── v0.18.22 Installed MetaGraphsNext ────────────── v0.7.3 Installed JLD2 ──────────────────────── v0.5.15 Installed ArnoldiMethod ─────────────── v0.4.0 Installed CodecZlib ─────────────────── v0.7.8 Installed AliasTables ───────────────── v1.1.3 Installed HashArrayMappedTries ──────── v0.2.0 Installed OrderedCollections ────────── v1.8.1 Installed Functors ──────────────────── v0.5.2 Installed TranscodingStreams ────────── v0.11.3 Installed StatsBase ─────────────────── v0.34.5 Installed Compat ────────────────────── v4.18.0 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed ProgressLogging ───────────── v0.1.5 Installed DataAPI ───────────────────── v1.16.0 Installed Statistics ────────────────── v1.11.1 Installed InitialValues ─────────────── v0.3.1 Installed ConsoleProgressMonitor ────── v0.1.2 Installed PrecompileTools ───────────── v1.3.2 Installed DataValueInterfaces ───────── v1.0.0 Installed StatsAPI ──────────────────── v1.7.1 Installed ProgressMeter ─────────────── v1.10.4 Installed ArgCheck ──────────────────── v2.5.0 Installed MarkdownAST ───────────────── v0.1.2 Installed LoggingExtras ─────────────── v1.1.0 Installed AbstractPPL ───────────────── v0.10.1 Installed StaticArraysCore ──────────── v1.4.3 Installed FileIO ────────────────────── v1.17.0 Installed Expat_jll ─────────────────── v2.6.5+0 Installed StaticArrays ──────────────── v1.9.14 Installed ChainRulesCore ────────────── v1.25.2 Installed LogDensityProblems ────────── v2.1.2 Installed IrrationalConstants ───────── v0.2.4 Installed LazilyInitializedFields ───── v1.3.0 Installed BangBang ──────────────────── v0.4.4 Installed Requires ──────────────────── v1.3.1 Installed SimpleTraits ──────────────── v0.9.4 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed TerminalLoggers ───────────── v0.1.7 Installed QuadGK ────────────────────── v2.11.2 Installed Documenter ────────────────── v1.14.1 Installed JuliaSyntax ───────────────── v0.4.10 Installed LeftChildRightSiblingTrees ── v0.2.1 Installed Git_jll ───────────────────── v2.50.1+0 Installed LogExpFunctions ───────────── v0.3.29 Installed JSON ──────────────────────── v0.21.4 Installed LogDensityProblemsAD ──────── v1.13.1 Installed Roots ─────────────────────── v2.2.8 Installed Parsers ───────────────────── v2.8.3 Installed Rmath ─────────────────────── v0.8.0 Installed ScopedValues ──────────────── v1.4.0 Installed SplittablesBase ───────────── v0.1.15 Installed StatsFuns ─────────────────── v1.5.0 Installed Transducers ───────────────── v0.4.84 Installed Distributions ─────────────── v0.25.120 Installed IOCapture ─────────────────── v0.2.5 Installed PtrArrays ─────────────────── v1.3.0 Installed Tables ────────────────────── v1.12.1 Installed AbstractMCMC ──────────────── v5.7.1 Installed Reexport ──────────────────── v1.2.2 Installed Git ───────────────────────── v1.4.0 Installed SpecialFunctions ──────────── v2.5.1 Installed InverseFunctions ──────────── v0.1.17 Installed Setfield ──────────────────── v1.1.2 Installed Baselet ───────────────────── v0.1.1 Installed Missings ──────────────────── v1.2.0 Installed JLLWrappers ───────────────── v1.7.1 Installed RegistryInstances ─────────── v0.1.0 Installed Preferences ───────────────── v1.4.3 Installed Libiconv_jll ──────────────── v1.18.0+0 Installed TableTraits ───────────────── v1.0.1 Installed MappedArrays ──────────────── v0.4.2 Installed PDMats ────────────────────── v0.11.35 Installed ChangesOfVariables ────────── v0.1.10 Installed SortingAlgorithms ─────────── v1.2.1 Installed DensityInterface ──────────── v0.4.0 Installed DocStringExtensions ───────── v0.9.5 Installed Bijectors ─────────────────── v0.15.8 Installed Inflate ───────────────────── v0.1.5 Installed ANSIColoredPrinters ───────── v0.0.1 Installed Accessors ─────────────────── v0.1.42 Installed Graphs ────────────────────── v1.13.0 Installed JuliaBUGS ─────────────────── v0.9.0 Installing 6 artifacts Installed artifact OpenSpecFun 194.9 KiB Installed artifact Expat 271.4 KiB Installed artifact Rmath 121.9 KiB Installed artifact Libiconv 1.9 MiB Installed artifact OpenSSH 4.2 MiB Installed artifact Git 48.8 MiB Updating `~/.julia/environments/v1.13/Project.toml` [ba9fb4c0] + JuliaBUGS v0.9.0 Updating `~/.julia/environments/v1.13/Manifest.toml` [a4c015fc] + ANSIColoredPrinters v0.0.1 [80f14c24] + AbstractMCMC v5.7.1 ⌅ [7a57a42e] + AbstractPPL v0.10.1 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 [ec485272] + ArnoldiMethod v0.4.0 [198e06fe] + BangBang v0.4.4 [9718e550] + Baselet v0.1.1 [76274a88] + Bijectors v0.15.8 [d360d2e6] + ChainRulesCore v1.25.2 [9e997f8a] + ChangesOfVariables v0.1.10 [944b1d66] + CodecZlib v0.7.8 [38540f10] + CommonSolve v0.2.4 [34da2185] + Compat v4.18.0 [a33af91c] + CompositionsBase v0.1.2 [88cd18e8] + ConsoleProgressMonitor v0.1.2 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [244e2a9f] + DefineSingletons v0.1.2 [b429d917] + DensityInterface v0.4.0 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [e30172f5] + Documenter v1.14.1 [5789e2e9] + FileIO v1.17.0 [1a297f60] + FillArrays v1.13.0 [d9f16b24] + Functors v0.5.2 [d7ba0133] + Git v1.4.0 [86223c79] + Graphs v1.13.0 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [b5f81e59] + IOCapture v0.2.5 [d25df0c9] + Inflate v0.1.5 [22cec73e] + InitialValues v0.3.1 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [033835bb] + JLD2 v0.5.15 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v0.21.4 [ba9fb4c0] + JuliaBUGS v0.9.0 ⌅ [70703baa] + JuliaSyntax v0.4.10 [0e77f7df] + LazilyInitializedFields v1.3.0 [1d6d02ad] + LeftChildRightSiblingTrees v0.2.1 [6fdf6af0] + LogDensityProblems v2.1.2 [996a588d] + LogDensityProblemsAD v1.13.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.1.0 [1914dd2f] + MacroTools v0.5.16 [dbb5928d] + MappedArrays v0.4.2 [d0879d2d] + MarkdownAST v0.1.2 [fa8bd995] + MetaGraphsNext v0.7.3 [128add7d] + MicroCollections v0.2.0 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [69de0a69] + Parsers v2.8.3 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [33c8b6b6] + ProgressLogging v0.1.5 [92933f4c] + ProgressMeter v1.10.4 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [2792f1a3] + RegistryInstances v0.1.0 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [f2b01f46] + Roots v2.2.8 [7e506255] + ScopedValues v1.4.0 [efcf1570] + Setfield v1.1.2 [699a6c99] + SimpleTraits v0.9.4 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [171d559e] + SplittablesBase v0.1.15 [90137ffa] + StaticArrays v1.9.14 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [4c63d2b9] + StatsFuns v1.5.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [5d786b92] + TerminalLoggers v0.1.7 [3bb67fe8] + TranscodingStreams v0.11.3 [28d57a85] + Transducers v0.4.84 [2e619515] + Expat_jll v2.6.5+0 [f8c6e375] + Git_jll v2.50.1+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [9bd350c2] + OpenSSH_jll v10.0.1+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.7.15 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.5.1+0 [efcefdf7] + PCRE2_jll v10.45.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 13.77s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4492.5 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 26 already precompiled. Precompiling package dependencies... Precompilation completed after 843.97s ################################################################################ # Testing # Testing JuliaBUGS Status `/tmp/jl_cQa6U3/Project.toml` [47edcb42] ADTypes v1.16.0 [80f14c24] AbstractMCMC v5.7.1 ⌅ [7a57a42e] AbstractPPL v0.10.1 [7d9f7c33] Accessors v0.1.42 ⌅ [0bf59076] AdvancedHMC v0.6.4 [5b7e9947] AdvancedMH v0.8.8 [198e06fe] BangBang v0.4.4 [76274a88] Bijectors v0.15.8 [082447d4] ChainRules v1.72.5 [31c24e10] Distributions v0.25.120 [e30172f5] Documenter v1.14.1 [86223c79] Graphs v1.13.0 [682c06a0] JSON v0.21.4 [ba9fb4c0] JuliaBUGS v0.9.0 ⌅ [70703baa] JuliaSyntax v0.4.10 [6fdf6af0] LogDensityProblems v2.1.2 [996a588d] LogDensityProblemsAD v1.13.1 [2ab3a3ac] LogExpFunctions v0.3.29 ⌅ [c7f686f2] MCMCChains v6.0.7 [1914dd2f] MacroTools v0.5.16 [fa8bd995] MetaGraphsNext v0.7.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [37e2e3b7] ReverseDiff v1.16.1 [276daf66] SpecialFunctions v2.5.1 [90137ffa] StaticArrays v1.9.14 [10745b16] Statistics v1.11.1 [37e2e46d] LinearAlgebra v1.13.0 [9a3f8284] Random v1.11.0 [9e88b42a] Serialization v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_cQa6U3/Manifest.toml` [47edcb42] ADTypes v1.16.0 [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [80f14c24] AbstractMCMC v5.7.1 ⌅ [7a57a42e] AbstractPPL v0.10.1 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 ⌅ [0bf59076] AdvancedHMC v0.6.4 [5b7e9947] AdvancedMH v0.8.8 [66dad0bd] AliasTables v1.1.3 [dce04be8] ArgCheck v2.5.0 [ec485272] ArnoldiMethod v0.4.0 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.7 [198e06fe] BangBang v0.4.4 [9718e550] Baselet v0.1.1 [76274a88] Bijectors v0.15.8 [082447d4] ChainRules v1.72.5 [d360d2e6] ChainRulesCore v1.25.2 [9e997f8a] ChangesOfVariables v0.1.10 [944b1d66] CodecZlib v0.7.8 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.0 [a33af91c] CompositionsBase v0.1.2 [88cd18e8] ConsoleProgressMonitor v0.1.2 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [244e2a9f] DefineSingletons v0.1.2 [b429d917] DensityInterface v0.4.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 [e30172f5] Documenter v1.14.1 [7a1cc6ca] FFTW v1.9.0 [5789e2e9] FileIO v1.17.0 [1a297f60] FillArrays v1.13.0 [f6369f11] ForwardDiff v1.0.1 [069b7b12] FunctionWrappers v1.1.3 [d9f16b24] Functors v0.5.2 [46192b85] GPUArraysCore v0.2.0 [d7ba0133] Git v1.4.0 [86223c79] Graphs v1.13.0 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [b5f81e59] IOCapture v0.2.5 [d25df0c9] Inflate v0.1.5 [22cec73e] InitialValues v0.3.1 [505f98c9] InplaceOps v0.3.0 [a98d9a8b] Interpolations v0.16.1 [8197267c] IntervalSets v0.7.11 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.4 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [033835bb] JLD2 v0.5.15 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v0.21.4 [ba9fb4c0] JuliaBUGS v0.9.0 ⌅ [70703baa] JuliaSyntax v0.4.10 [5ab0869b] KernelDensity v0.6.10 [b964fa9f] LaTeXStrings v1.4.0 [0e77f7df] LazilyInitializedFields v1.3.0 [1d6d02ad] LeftChildRightSiblingTrees v0.2.1 [6fdf6af0] LogDensityProblems v2.1.2 [996a588d] LogDensityProblemsAD v1.13.1 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.1.0 ⌅ [c7f686f2] MCMCChains v6.0.7 [be115224] MCMCDiagnosticTools v0.3.14 [e80e1ace] MLJModelInterface v1.12.0 [1914dd2f] MacroTools v0.5.16 [dbb5928d] MappedArrays v0.4.2 [d0879d2d] MarkdownAST v0.1.2 [fa8bd995] MetaGraphsNext v0.7.3 [128add7d] MicroCollections v0.2.0 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.3 [c020b1a1] NaturalSort v1.0.0 [6fe1bfb0] OffsetArrays v1.17.0 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [69de0a69] Parsers v2.8.3 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [33c8b6b6] ProgressLogging v0.1.5 [92933f4c] ProgressMeter v1.10.4 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [b3c3ace0] RangeArrays v0.3.2 [c84ed2f1] Ratios v0.4.5 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [2792f1a3] RegistryInstances v0.1.0 [ae029012] Requires v1.3.1 [37e2e3b7] ReverseDiff v1.16.1 [79098fc4] Rmath v0.8.0 [f2b01f46] Roots v2.2.8 [30f210dd] ScientificTypesBase v3.0.0 [7e506255] ScopedValues v1.4.0 [efcf1570] Setfield v1.1.2 [699a6c99] SimpleTraits v0.9.4 [ce78b400] SimpleUnPack v1.1.0 [a2af1166] SortingAlgorithms v1.2.1 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.5.1 [171d559e] SplittablesBase v0.1.15 [90137ffa] StaticArrays v1.9.14 [1e83bf80] StaticArraysCore v1.4.3 [64bff920] StatisticalTraits v3.5.0 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.5 [4c63d2b9] StatsFuns v1.5.0 [892a3eda] StringManipulation v0.4.1 [09ab397b] StructArrays v0.7.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [5d786b92] TerminalLoggers v0.1.7 [3bb67fe8] TranscodingStreams v0.11.3 [28d57a85] Transducers v0.4.84 [efce3f68] WoodburyMatrices v1.0.0 [2e619515] Expat_jll v2.6.5+0 [f5851436] FFTW_jll v3.3.11+0 [f8c6e375] Git_jll v2.50.1+0 [1d5cc7b8] IntelOpenMP_jll v2025.2.0+0 [94ce4f54] Libiconv_jll v1.18.0+0 [856f044c] MKL_jll v2025.2.0+0 [9bd350c2] OpenSSH_jll v10.0.1+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [1317d2d5] oneTBB_jll v2022.0.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.7.15 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.1+0 [efcefdf7] PCRE2_jll v10.45.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... [ Info: progress logging is disabled globally [ Info: Running tests for groups: all ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter ~/.julia/packages/Documenter/eoWm2/src/utilities/utilities.jl:665 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. [ Info: Skipped ExpandTemplates step (doctest only). [ Info: Skipped CrossReferences step (doctest only). [ Info: Skipped CheckDocument step (doctest only). [ Info: Skipped Populate step (doctest only). [ Info: Skipped RenderDocument step (doctest only). Test Summary: | Pass Total Time Unit Tests | 5 5 1m33.0s Test Summary: | Pass Total Time Parser | 91 91 57.0s Test Summary: | Pass Total Time CollectVariables Error Cases | 4 4 5.0s Test Summary: | Pass Total Time is_specified_by_data | 14 14 0.5s ┌ Warning: Variables that can be directly computed from data are considered 'transformed data' in BUGS. │ These variables won't appear in the probabilistic graph. │ In this model, 'a' is one such variable. │ There may be others, but this warning is only shown once. │ If you're not working with existing BUGS programs, consider pre-computing these variables in Julia for efficiency. └ @ JuliaBUGS ~/.julia/packages/JuliaBUGS/iDTyw/src/compiler_pass.jl:516 Test Summary: | Pass Total Time Constant propagation | 5 5 6.1s Test Summary: | Pass Total Time CheckRepeatedAssignments | 7 7 11.9s ┌ Warning: In BUGS, if the lower bound of for loop is greater than the upper bound, the loop will be skipped. └ @ JuliaBUGS ~/.julia/packages/JuliaBUGS/iDTyw/src/compiler_pass.jl:25 Test Summary: | Pass Total Time lower bound greater than upper bound | 2 2 6.6s ┌ Warning: Variables that can be directly computed from data are considered 'transformed data' in BUGS. │ These variables won't appear in the probabilistic graph. │ In this model, 'xa[1, 1]' is one such variable. │ There may be others, but this warning is only shown once. │ If you're not working with existing BUGS programs, consider pre-computing these variables in Julia for efficiency. └ @ JuliaBUGS ~/.julia/packages/JuliaBUGS/iDTyw/src/compiler_pass.jl:516 ┌ Warning: Variables that can be directly computed from data are considered 'transformed data' in BUGS. │ These variables won't appear in the probabilistic graph. │ In this model, 'rtx[1, 1]' is one such variable. │ There may be others, but this warning is only shown once. │ If you're not working with existing BUGS programs, consider pre-computing these variables in Julia for efficiency. └ @ JuliaBUGS ~/.julia/packages/JuliaBUGS/iDTyw/src/compiler_pass.jl:516 ┌ Warning: Variables that can be directly computed from data are considered 'transformed data' in BUGS. │ These variables won't appear in the probabilistic graph. │ In this model, 'T[1, 1]' is one such variable. │ There may be others, but this warning is only shown once. │ If you're not working with existing BUGS programs, consider pre-computing these variables in Julia for efficiency. └ @ JuliaBUGS ~/.julia/packages/JuliaBUGS/iDTyw/src/compiler_pass.jl:516 ┌ Warning: Variables that can be directly computed from data are considered 'transformed data' in BUGS. │ These variables won't appear in the probabilistic graph. │ In this model, 'z[1, 1]' is one such variable. │ There may be others, but this warning is only shown once. │ If you're not working with existing BUGS programs, consider pre-computing these variables in Julia for efficiency. └ @ JuliaBUGS ~/.julia/packages/JuliaBUGS/iDTyw/src/compiler_pass.jl:516 ┌ Warning: Variables that can be directly computed from data are considered 'transformed data' in BUGS. │ These variables won't appear in the probabilistic graph. │ In this model, 'log.Base4[1]' is one such variable. │ There may be others, but this warning is only shown once. │ If you're not working with existing BUGS programs, consider pre-computing these variables in Julia for efficiency. └ @ JuliaBUGS ~/.julia/packages/JuliaBUGS/iDTyw/src/compiler_pass.jl:516 ┌ Warning: In BUGS, if the lower bound of for loop is greater than the upper bound, the loop will be skipped. └ @ JuliaBUGS ~/.julia/packages/JuliaBUGS/iDTyw/src/compiler_pass.jl:25 ┌ Warning: Variables that can be directly computed from data are considered 'transformed data' in BUGS. │ These variables won't appear in the probabilistic graph. │ In this model, 'r[1, 1]' is one such variable. │ There may be others, but this warning is only shown once. │ If you're not working with existing BUGS programs, consider pre-computing these variables in Julia for efficiency. └ @ JuliaBUGS ~/.julia/packages/JuliaBUGS/iDTyw/src/compiler_pass.jl:516 ┌ Warning: In BUGS, if the lower bound of for loop is greater than the upper bound, the loop will be skipped. └ @ JuliaBUGS ~/.julia/packages/JuliaBUGS/iDTyw/src/compiler_pass.jl:25 ┌ Warning: Variables that can be directly computed from data are considered 'transformed data' in BUGS. │ These variables won't appear in the probabilistic graph. │ In this model, 'Y[1, 1]' is one such variable. │ There may be others, but this warning is only shown once. │ If you're not working with existing BUGS programs, consider pre-computing these variables in Julia for efficiency. └ @ JuliaBUGS ~/.julia/packages/JuliaBUGS/iDTyw/src/compiler_pass.jl:516 ┌ Warning: Variables that can be directly computed from data are considered 'transformed data' in BUGS. │ These variables won't appear in the probabilistic graph. │ In this model, 'Y[1, 1]' is one such variable. │ There may be others, but this warning is only shown once. │ If you're not working with existing BUGS programs, consider pre-computing these variables in Julia for efficiency. └ @ JuliaBUGS ~/.julia/packages/JuliaBUGS/iDTyw/src/compiler_pass.jl:516 Test Summary: | Total Time BUGS examples volume 1 | 0 7m18.5s ┌ Warning: `cholesky(A::Union{StridedMatrix, RealHermSymComplexHerm{<:Real, <:StridedMatrix}}, ::Val{false}; check::Bool = true)` is deprecated, use `cholesky(A, NoPivot(); check)` instead. │ caller = #rrule#830 at factorization.jl:498 [inlined] └ @ Core ~/.julia/packages/ChainRules/166sf/src/rulesets/LinearAlgebra/factorization.jl:498 ┌ Warning: Variables that can be directly computed from data are considered 'transformed data' in BUGS. │ These variables won't appear in the probabilistic graph. │ In this model, 'b' is one such variable. │ There may be others, but this warning is only shown once. │ If you're not working with existing BUGS programs, consider pre-computing these variables in Julia for efficiency. └ @ JuliaBUGS ~/.julia/packages/JuliaBUGS/iDTyw/src/compiler_pass.jl:516 Test Summary: | Pass Total Time Some corner cases | 16 16 1m47.5s Test Summary: | Pass Total Time Log density | 22 22 25.1s ┌ Warning: In BUGS, if the lower bound of for loop is greater than the upper bound, the loop will be skipped. └ @ JuliaBUGS ~/.julia/packages/JuliaBUGS/iDTyw/src/compiler_pass.jl:25 ┌ Warning: Variables that can be directly computed from data are considered 'transformed data' in BUGS. │ These variables won't appear in the probabilistic graph. │ In this model, 'xa[1, 1]' is one such variable. │ There may be others, but this warning is only shown once. │ If you're not working with existing BUGS programs, consider pre-computing these variables in Julia for efficiency. └ @ JuliaBUGS ~/.julia/packages/JuliaBUGS/iDTyw/src/compiler_pass.jl:516 Test Summary: | Pass Total Time Log density of BUGS models | 16 16 14.8s Test Summary: | Pass Total Time serialization | 374 374 10.6s Test Summary: | Pass Total Time controlling sampling behavior for conditioned variables | 4 4 4.4s Test Summary: | Pass Total Time `evaluate!!` is actually modifying returned `evaluation_env` | 1 1 9.0s Test Summary: | Pass Total Time logprior and loglikelihood | 3 3 8.5s Test Summary: | Pass Total Time Simple gibbs | 5 5 5m56.4s [ Info: Found initial step size 0.4 Sampling 0%| | ETA: 6:29:54 iterations: 2 ratio_divergent_transitions: 0.0 ratio_divergent_transitions_during_adaption: 0.0 n_steps: 15 is_accept: true acceptance_rate: 0.9905370518133 log_density: -20.27422808714946 hamiltonian_energy: 20.723071703986115 hamiltonian_energy_error: 0.08631205059968394 max_hamiltonian_energy_error: -0.18289403447406372 tree_depth: 4 numerical_error: false step_size: 0.32530300918212063 nom_step_size: 0.32530300918212063 is_adapt: false mass_matrix: DiagEuclideanMetric([0.08470722104427429, 0.007 ...])                                   Sampling 100%|███████████████████████████████| Time: 0:00:24 iterations: 2000 ratio_divergent_transitions: 0.0 ratio_divergent_transitions_during_adaption: 0.0 n_steps: 11 is_accept: true acceptance_rate: 0.9773427186318489 log_density: -21.328284962375953 hamiltonian_energy: 21.779886804217515 hamiltonian_energy_error: 0.008216596799531573 max_hamiltonian_energy_error: -0.11157592265270111 tree_depth: 3 numerical_error: false step_size: 0.32530300918212063 nom_step_size: 0.32530300918212063 is_adapt: false mass_matrix: DiagEuclideanMetric([0.08470722104427429, 0.007 ...]) [ Info: Found initial step size 0.8 MCMCChains extension: Error During Test at /home/pkgeval/.julia/packages/JuliaBUGS/iDTyw/test/ext/mcmchains.jl:2 Got exception outside of a @test DomainError with -2.220446047963509e-16: log was called with a negative real argument but will only return a complex result if called with a complex argument. Try log(Complex(x)). Stacktrace: [1] throw_complex_domainerror(f::Symbol, x::Float64) @ Base.Math ./math.jl:33 [2] _log @ ./special/log.jl:295 [inlined] [3] log(x::Float64) @ Base.Math ./special/log.jl:261 [4] xlogy @ ~/.julia/packages/LogExpFunctions/iNqo2/src/basicfuns.jl:28 [inlined] [5] xlogy @ ~/.julia/packages/ForwardDiff/Wq9Wb/src/dual.jl:284 [inlined] [6] #binary_scalar_forward_exec!##4 @ ~/.julia/packages/ReverseDiff/rKZaG/src/derivatives/scalars.jl:116 [inlined] [7] derivative! @ ~/.julia/packages/ForwardDiff/Wq9Wb/src/derivative.jl:48 [inlined] [8] binary_scalar_forward_exec!(f::typeof(LogExpFunctions.xlogy), output::ReverseDiff.TrackedReal{Float64, Float64, Nothing}, input::Tuple{Float64, ReverseDiff.TrackedReal{Float64, Float64, ReverseDiff.TrackedArray{Float64, Float64, 1, Vector{Float64}, Vector{Float64}}}}, cache::Base.RefValue{StaticArraysCore.SVector{2, Float64}}) @ ReverseDiff ~/.julia/packages/ReverseDiff/rKZaG/src/derivatives/scalars.jl:116 [9] scalar_forward_exec!(instruction::ReverseDiff.ScalarInstruction{typeof(LogExpFunctions.xlogy), Tuple{Float64, ReverseDiff.TrackedReal{Float64, Float64, ReverseDiff.TrackedArray{Float64, Float64, 1, Vector{Float64}, Vector{Float64}}}}, ReverseDiff.TrackedReal{Float64, Float64, Nothing}, Base.RefValue{StaticArraysCore.SVector{2, Float64}}}) @ ReverseDiff ~/.julia/packages/ReverseDiff/rKZaG/src/derivatives/scalars.jl:88 [10] forward_exec!(instruction::ReverseDiff.ScalarInstruction{typeof(LogExpFunctions.xlogy), Tuple{Float64, ReverseDiff.TrackedReal{Float64, Float64, ReverseDiff.TrackedArray{Float64, Float64, 1, Vector{Float64}, Vector{Float64}}}}, ReverseDiff.TrackedReal{Float64, Float64, Nothing}, Base.RefValue{StaticArraysCore.SVector{2, Float64}}}) @ ReverseDiff ~/.julia/packages/ReverseDiff/rKZaG/src/tape.jl:82 [11] ForwardExecutor @ ~/.julia/packages/ReverseDiff/rKZaG/src/api/tape.jl:76 [inlined] [12] (::FunctionWrappers.CallWrapper{Nothing})(f::ReverseDiff.ForwardExecutor{ReverseDiff.ScalarInstruction{typeof(LogExpFunctions.xlogy), Tuple{Float64, ReverseDiff.TrackedReal{Float64, Float64, ReverseDiff.TrackedArray{Float64, Float64, 1, Vector{Float64}, Vector{Float64}}}}, ReverseDiff.TrackedReal{Float64, Float64, Nothing}, Base.RefValue{StaticArraysCore.SVector{2, Float64}}}}) @ FunctionWrappers ~/.julia/packages/FunctionWrappers/Q5cBx/src/FunctionWrappers.jl:65 [13] macro expansion @ ~/.julia/packages/FunctionWrappers/Q5cBx/src/FunctionWrappers.jl:137 [inlined] [14] do_ccall @ ~/.julia/packages/FunctionWrappers/Q5cBx/src/FunctionWrappers.jl:125 [inlined] [15] FunctionWrapper @ ~/.julia/packages/FunctionWrappers/Q5cBx/src/FunctionWrappers.jl:144 [inlined] [16] forward_pass!(compiled_tape::ReverseDiff.CompiledTape{ReverseDiff.GradientTape{Base.Fix1{typeof(LogDensityProblems.logdensity), JuliaBUGS.BUGSModel{Nothing, @NamedTuple{A::Matrix{Float64}, mu::Vector{Float64}, sigma::Vector{Float64}}, Vector{Function}, Vector{@NamedTuple{}}, @NamedTuple{}}}, ReverseDiff.TrackedArray{Float64, Float64, 1, Vector{Float64}, Vector{Float64}}, ReverseDiff.TrackedReal{Float64, Float64, Nothing}}}) @ ReverseDiff ~/.julia/packages/ReverseDiff/rKZaG/src/api/tape.jl:124 [17] seeded_forward_pass! @ ~/.julia/packages/ReverseDiff/rKZaG/src/api/tape.jl:42 [inlined] [18] gradient! @ ~/.julia/packages/ReverseDiff/rKZaG/src/api/gradients.jl:79 [inlined] [19] logdensity_and_gradient @ ~/.julia/packages/LogDensityProblemsAD/DH6MG/ext/LogDensityProblemsADReverseDiffExt.jl:64 [inlined] [20] Fix @ ./operators.jl:1194 [inlined] [21] ∂H∂θ(h::Hamiltonian{DiagEuclideanMetric{Float64, Vector{Float64}}, GaussianKinetic, Base.Fix1{typeof(LogDensityProblems.logdensity), LogDensityProblemsADReverseDiffExt.ReverseDiffLogDensity{JuliaBUGS.BUGSModel{Nothing, @NamedTuple{A::Matrix{Float64}, mu::Vector{Float64}, sigma::Vector{Float64}}, Vector{Function}, Vector{@NamedTuple{}}, @NamedTuple{}}, ReverseDiff.CompiledTape{ReverseDiff.GradientTape{Base.Fix1{typeof(LogDensityProblems.logdensity), JuliaBUGS.BUGSModel{Nothing, @NamedTuple{A::Matrix{Float64}, mu::Vector{Float64}, sigma::Vector{Float64}}, Vector{Function}, Vector{@NamedTuple{}}, @NamedTuple{}}}, ReverseDiff.TrackedArray{Float64, Float64, 1, Vector{Float64}, Vector{Float64}}, ReverseDiff.TrackedReal{Float64, Float64, Nothing}}}}}, Base.Fix1{typeof(LogDensityProblems.logdensity_and_gradient), LogDensityProblemsADReverseDiffExt.ReverseDiffLogDensity{JuliaBUGS.BUGSModel{Nothing, @NamedTuple{A::Matrix{Float64}, mu::Vector{Float64}, sigma::Vector{Float64}}, Vector{Function}, Vector{@NamedTuple{}}, @NamedTuple{}}, ReverseDiff.CompiledTape{ReverseDiff.GradientTape{Base.Fix1{typeof(LogDensityProblems.logdensity), JuliaBUGS.BUGSModel{Nothing, @NamedTuple{A::Matrix{Float64}, mu::Vector{Float64}, sigma::Vector{Float64}}, Vector{Function}, Vector{@NamedTuple{}}, @NamedTuple{}}}, ReverseDiff.TrackedArray{Float64, Float64, 1, Vector{Float64}, Vector{Float64}}, ReverseDiff.TrackedReal{Float64, Float64, Nothing}}}}}}, θ::Vector{Float64}) @ AdvancedHMC ~/.julia/packages/AdvancedHMC/9NhHg/src/hamiltonian.jl:38 [22] step(lf::Leapfrog{Float64}, h::Hamiltonian{DiagEuclideanMetric{Float64, Vector{Float64}}, GaussianKinetic, Base.Fix1{typeof(LogDensityProblems.logdensity), LogDensityProblemsADReverseDiffExt.ReverseDiffLogDensity{JuliaBUGS.BUGSModel{Nothing, @NamedTuple{A::Matrix{Float64}, mu::Vector{Float64}, sigma::Vector{Float64}}, Vector{Function}, Vector{@NamedTuple{}}, @NamedTuple{}}, ReverseDiff.CompiledTape{ReverseDiff.GradientTape{Base.Fix1{typeof(LogDensityProblems.logdensity), JuliaBUGS.BUGSModel{Nothing, @NamedTuple{A::Matrix{Float64}, mu::Vector{Float64}, sigma::Vector{Float64}}, Vector{Function}, Vector{@NamedTuple{}}, @NamedTuple{}}}, ReverseDiff.TrackedArray{Float64, Float64, 1, Vector{Float64}, Vector{Float64}}, ReverseDiff.TrackedReal{Float64, Float64, Nothing}}}}}, Base.Fix1{typeof(LogDensityProblems.logdensity_and_gradient), LogDensityProblemsADReverseDiffExt.ReverseDiffLogDensity{JuliaBUGS.BUGSModel{Nothing, @NamedTuple{A::Matrix{Float64}, mu::Vector{Float64}, sigma::Vector{Float64}}, Vector{Function}, Vector{@NamedTuple{}}, @NamedTuple{}}, ReverseDiff.CompiledTape{ReverseDiff.GradientTape{Base.Fix1{typeof(LogDensityProblems.logdensity), JuliaBUGS.BUGSModel{Nothing, @NamedTuple{A::Matrix{Float64}, mu::Vector{Float64}, sigma::Vector{Float64}}, Vector{Function}, Vector{@NamedTuple{}}, @NamedTuple{}}}, ReverseDiff.TrackedArray{Float64, Float64, 1, Vector{Float64}, Vector{Float64}}, ReverseDiff.TrackedReal{Float64, Float64, Nothing}}}}}}, z::AdvancedHMC.PhasePoint{Vector{Float64}, AdvancedHMC.DualValue{Float64, Vector{Float64}}}, n_steps::Int64; fwd::Bool, full_trajectory::Val{false}) @ AdvancedHMC ~/.julia/packages/AdvancedHMC/9NhHg/src/integrator.jl:229 [23] step @ ~/.julia/packages/AdvancedHMC/9NhHg/src/integrator.jl:199 [inlined] [24] build_tree(rng::TaskLocalRNG, nt::Trajectory{MultinomialTS, Leapfrog{Float64}, GeneralisedNoUTurn{Float64}}, h::Hamiltonian{DiagEuclideanMetric{Float64, Vector{Float64}}, GaussianKinetic, Base.Fix1{typeof(LogDensityProblems.logdensity), LogDensityProblemsADReverseDiffExt.ReverseDiffLogDensity{JuliaBUGS.BUGSModel{Nothing, @NamedTuple{A::Matrix{Float64}, mu::Vector{Float64}, sigma::Vector{Float64}}, Vector{Function}, Vector{@NamedTuple{}}, @NamedTuple{}}, ReverseDiff.CompiledTape{ReverseDiff.GradientTape{Base.Fix1{typeof(LogDensityProblems.logdensity), JuliaBUGS.BUGSModel{Nothing, @NamedTuple{A::Matrix{Float64}, mu::Vector{Float64}, sigma::Vector{Float64}}, Vector{Function}, Vector{@NamedTuple{}}, @NamedTuple{}}}, ReverseDiff.TrackedArray{Float64, Float64, 1, Vector{Float64}, Vector{Float64}}, ReverseDiff.TrackedReal{Float64, Float64, Nothing}}}}}, Base.Fix1{typeof(LogDensityProblems.logdensity_and_gradient), LogDensityProblemsADReverseDiffExt.ReverseDiffLogDensity{JuliaBUGS.BUGSModel{Nothing, @NamedTuple{A::Matrix{Float64}, mu::Vector{Float64}, sigma::Vector{Float64}}, Vector{Function}, Vector{@NamedTuple{}}, @NamedTuple{}}, ReverseDiff.CompiledTape{ReverseDiff.GradientTape{Base.Fix1{typeof(LogDensityProblems.logdensity), JuliaBUGS.BUGSModel{Nothing, @NamedTuple{A::Matrix{Float64}, mu::Vector{Float64}, sigma::Vector{Float64}}, Vector{Function}, Vector{@NamedTuple{}}, @NamedTuple{}}}, ReverseDiff.TrackedArray{Float64, Float64, 1, Vector{Float64}, Vector{Float64}}, ReverseDiff.TrackedReal{Float64, Float64, Nothing}}}}}}, z::AdvancedHMC.PhasePoint{Vector{Float64}, AdvancedHMC.DualValue{Float64, Vector{Float64}}}, sampler::MultinomialTS{Float64}, v::Int64, j::Int64, H0::Float64) @ AdvancedHMC ~/.julia/packages/AdvancedHMC/9NhHg/src/trajectory.jl:639 [25] transition(rng::TaskLocalRNG, τ::Trajectory{MultinomialTS, Leapfrog{Float64}, GeneralisedNoUTurn{Float64}}, h::Hamiltonian{DiagEuclideanMetric{Float64, Vector{Float64}}, GaussianKinetic, Base.Fix1{typeof(LogDensityProblems.logdensity), LogDensityProblemsADReverseDiffExt.ReverseDiffLogDensity{JuliaBUGS.BUGSModel{Nothing, @NamedTuple{A::Matrix{Float64}, mu::Vector{Float64}, sigma::Vector{Float64}}, Vector{Function}, Vector{@NamedTuple{}}, @NamedTuple{}}, ReverseDiff.CompiledTape{ReverseDiff.GradientTape{Base.Fix1{typeof(LogDensityProblems.logdensity), JuliaBUGS.BUGSModel{Nothing, @NamedTuple{A::Matrix{Float64}, mu::Vector{Float64}, sigma::Vector{Float64}}, Vector{Function}, Vector{@NamedTuple{}}, @NamedTuple{}}}, ReverseDiff.TrackedArray{Float64, Float64, 1, Vector{Float64}, Vector{Float64}}, ReverseDiff.TrackedReal{Float64, Float64, Nothing}}}}}, Base.Fix1{typeof(LogDensityProblems.logdensity_and_gradient), LogDensityProblemsADReverseDiffExt.ReverseDiffLogDensity{JuliaBUGS.BUGSModel{Nothing, @NamedTuple{A::Matrix{Float64}, mu::Vector{Float64}, sigma::Vector{Float64}}, Vector{Function}, Vector{@NamedTuple{}}, @NamedTuple{}}, ReverseDiff.CompiledTape{ReverseDiff.GradientTape{Base.Fix1{typeof(LogDensityProblems.logdensity), JuliaBUGS.BUGSModel{Nothing, @NamedTuple{A::Matrix{Float64}, mu::Vector{Float64}, sigma::Vector{Float64}}, Vector{Function}, Vector{@NamedTuple{}}, @NamedTuple{}}}, ReverseDiff.TrackedArray{Float64, Float64, 1, Vector{Float64}, Vector{Float64}}, ReverseDiff.TrackedReal{Float64, Float64, Nothing}}}}}}, z0::AdvancedHMC.PhasePoint{Vector{Float64}, AdvancedHMC.DualValue{Float64, Vector{Float64}}}) @ AdvancedHMC ~/.julia/packages/AdvancedHMC/9NhHg/src/trajectory.jl:708 [26] transition(rng::TaskLocalRNG, h::Hamiltonian{DiagEuclideanMetric{Float64, Vector{Float64}}, GaussianKinetic, Base.Fix1{typeof(LogDensityProblems.logdensity), LogDensityProblemsADReverseDiffExt.ReverseDiffLogDensity{JuliaBUGS.BUGSModel{Nothing, @NamedTuple{A::Matrix{Float64}, mu::Vector{Float64}, sigma::Vector{Float64}}, Vector{Function}, Vector{@NamedTuple{}}, @NamedTuple{}}, ReverseDiff.CompiledTape{ReverseDiff.GradientTape{Base.Fix1{typeof(LogDensityProblems.logdensity), JuliaBUGS.BUGSModel{Nothing, @NamedTuple{A::Matrix{Float64}, mu::Vector{Float64}, sigma::Vector{Float64}}, Vector{Function}, Vector{@NamedTuple{}}, @NamedTuple{}}}, ReverseDiff.TrackedArray{Float64, Float64, 1, Vector{Float64}, Vector{Float64}}, ReverseDiff.TrackedReal{Float64, Float64, Nothing}}}}}, Base.Fix1{typeof(LogDensityProblems.logdensity_and_gradient), LogDensityProblemsADReverseDiffExt.ReverseDiffLogDensity{JuliaBUGS.BUGSModel{Nothing, @NamedTuple{A::Matrix{Float64}, mu::Vector{Float64}, sigma::Vector{Float64}}, Vector{Function}, Vector{@NamedTuple{}}, @NamedTuple{}}, ReverseDiff.CompiledTape{ReverseDiff.GradientTape{Base.Fix1{typeof(LogDensityProblems.logdensity), JuliaBUGS.BUGSModel{Nothing, @NamedTuple{A::Matrix{Float64}, mu::Vector{Float64}, sigma::Vector{Float64}}, Vector{Function}, Vector{@NamedTuple{}}, @NamedTuple{}}}, ReverseDiff.TrackedArray{Float64, Float64, 1, Vector{Float64}, Vector{Float64}}, ReverseDiff.TrackedReal{Float64, Float64, Nothing}}}}}}, κ::HMCKernel{AdvancedHMC.FullMomentumRefreshment, Trajectory{MultinomialTS, Leapfrog{Float64}, GeneralisedNoUTurn{Float64}}}, z::AdvancedHMC.PhasePoint{Vector{Float64}, AdvancedHMC.DualValue{Float64, Vector{Float64}}}) @ AdvancedHMC ~/.julia/packages/AdvancedHMC/9NhHg/src/sampler.jl:59 [27] step(rng::TaskLocalRNG, model::AbstractMCMC.LogDensityModel{LogDensityProblemsADReverseDiffExt.ReverseDiffLogDensity{JuliaBUGS.BUGSModel{Nothing, @NamedTuple{A::Matrix{Float64}, mu::Vector{Float64}, sigma::Vector{Float64}}, Vector{Function}, Vector{@NamedTuple{}}, @NamedTuple{}}, ReverseDiff.CompiledTape{ReverseDiff.GradientTape{Base.Fix1{typeof(LogDensityProblems.logdensity), JuliaBUGS.BUGSModel{Nothing, @NamedTuple{A::Matrix{Float64}, mu::Vector{Float64}, sigma::Vector{Float64}}, Vector{Function}, Vector{@NamedTuple{}}, @NamedTuple{}}}, ReverseDiff.TrackedArray{Float64, Float64, 1, Vector{Float64}, Vector{Float64}}, ReverseDiff.TrackedReal{Float64, Float64, Nothing}}}}}, spl::NUTS{Float64, Symbol, Symbol}, state::AdvancedHMC.HMCState{AdvancedHMC.Transition{AdvancedHMC.PhasePoint{Vector{Float64}, AdvancedHMC.DualValue{Float64, Vector{Float64}}}, @NamedTuple{n_steps::Int64, is_accept::Bool, acceptance_rate::Float64, log_density::Float64, hamiltonian_energy::Float64, hamiltonian_energy_error::Float64, max_hamiltonian_energy_error::Float64, tree_depth::Int64, numerical_error::Bool, step_size::Float64, nom_step_size::Float64}}, DiagEuclideanMetric{Float64, Vector{Float64}}, HMCKernel{AdvancedHMC.FullMomentumRefreshment, Trajectory{MultinomialTS, Leapfrog{Float64}, GeneralisedNoUTurn{Float64}}}, StanHMCAdaptor{WelfordVar{Float64, Vector{Float64}}, NesterovDualAveraging{Float64}}}; n_adapts::Int64, kwargs::@Kwargs{verbose::Bool}) @ AdvancedHMC ~/.julia/packages/AdvancedHMC/9NhHg/src/abstractmcmc.jl:199 [28] macro expansion @ ~/.julia/packages/AbstractMCMC/Qy4Y4/src/sample.jl:0 [inlined] [29] (::AbstractMCMC.var"#25#26"{AdvancedHMC.HMCProgressCallback{ProgressMeter.Progress}, Int64, Int64, Int64, Nothing, @Kwargs{n_adapts::Int64, verbose::Bool}, TaskLocalRNG, AbstractMCMC.LogDensityModel{LogDensityProblemsADReverseDiffExt.ReverseDiffLogDensity{JuliaBUGS.BUGSModel{Nothing, @NamedTuple{A::Matrix{Float64}, mu::Vector{Float64}, sigma::Vector{Float64}}, Vector{Function}, Vector{@NamedTuple{}}, @NamedTuple{}}, ReverseDiff.CompiledTape{ReverseDiff.GradientTape{Base.Fix1{typeof(LogDensityProblems.logdensity), JuliaBUGS.BUGSModel{Nothing, @NamedTuple{A::Matrix{Float64}, mu::Vector{Float64}, sigma::Vector{Float64}}, Vector{Function}, Vector{@NamedTuple{}}, @NamedTuple{}}}, ReverseDiff.TrackedArray{Float64, Float64, 1, Vector{Float64}, Vector{Float64}}, ReverseDiff.TrackedReal{Float64, Float64, Nothing}}}}}, NUTS{Float64, Symbol, Symbol}, Int64, Int64, Int64})() @ AbstractMCMC ~/.julia/packages/AbstractMCMC/Qy4Y4/src/logging.jl:134 [30] with_logstate(f::AbstractMCMC.var"#25#26"{AdvancedHMC.HMCProgressCallback{ProgressMeter.Progress}, Int64, Int64, Int64, Nothing, @Kwargs{n_adapts::Int64, verbose::Bool}, TaskLocalRNG, AbstractMCMC.LogDensityModel{LogDensityProblemsADReverseDiffExt.ReverseDiffLogDensity{JuliaBUGS.BUGSModel{Nothing, @NamedTuple{A::Matrix{Float64}, mu::Vector{Float64}, sigma::Vector{Float64}}, Vector{Function}, Vector{@NamedTuple{}}, @NamedTuple{}}, ReverseDiff.CompiledTape{ReverseDiff.GradientTape{Base.Fix1{typeof(LogDensityProblems.logdensity), JuliaBUGS.BUGSModel{Nothing, @NamedTuple{A::Matrix{Float64}, mu::Vector{Float64}, sigma::Vector{Float64}}, Vector{Function}, Vector{@NamedTuple{}}, @NamedTuple{}}}, ReverseDiff.TrackedArray{Float64, Float64, 1, Vector{Float64}, Vector{Float64}}, ReverseDiff.TrackedReal{Float64, Float64, Nothing}}}}}, NUTS{Float64, Symbol, Symbol}, Int64, Int64, Int64}, logstate::Base.CoreLogging.LogState) @ Base.CoreLogging ./logging/logging.jl:540 [31] with_logger(f::Function, logger::LoggingExtras.TeeLogger{Tuple{LoggingExtras.EarlyFilteredLogger{TerminalLoggers.TerminalLogger, AbstractMCMC.var"#with_progresslogger##0#with_progresslogger##1"{Module}}, LoggingExtras.EarlyFilteredLogger{Base.CoreLogging.ConsoleLogger, AbstractMCMC.var"#with_progresslogger##2#with_progresslogger##3"{Module}}}}) @ Base.CoreLogging ./logging/logging.jl:651 [32] with_progresslogger(f::Function, _module::Module, logger::Base.CoreLogging.ConsoleLogger) @ AbstractMCMC ~/.julia/packages/AbstractMCMC/Qy4Y4/src/logging.jl:157 [33] macro expansion @ ~/.julia/packages/AbstractMCMC/Qy4Y4/src/logging.jl:133 [inlined] [34] mcmcsample(rng::TaskLocalRNG, model::AbstractMCMC.LogDensityModel{LogDensityProblemsADReverseDiffExt.ReverseDiffLogDensity{JuliaBUGS.BUGSModel{Nothing, @NamedTuple{A::Matrix{Float64}, mu::Vector{Float64}, sigma::Vector{Float64}}, Vector{Function}, Vector{@NamedTuple{}}, @NamedTuple{}}, ReverseDiff.CompiledTape{ReverseDiff.GradientTape{Base.Fix1{typeof(LogDensityProblems.logdensity), JuliaBUGS.BUGSModel{Nothing, @NamedTuple{A::Matrix{Float64}, mu::Vector{Float64}, sigma::Vector{Float64}}, Vector{Function}, Vector{@NamedTuple{}}, @NamedTuple{}}}, ReverseDiff.TrackedArray{Float64, Float64, 1, Vector{Float64}, Vector{Float64}}, ReverseDiff.TrackedReal{Float64, Float64, Nothing}}}}}, sampler::NUTS{Float64, Symbol, Symbol}, N::Int64; progress::Bool, progressname::String, callback::AdvancedHMC.HMCProgressCallback{ProgressMeter.Progress}, num_warmup::Int64, discard_initial::Int64, thinning::Int64, chain_type::Type, initial_state::Nothing, kwargs::@Kwargs{n_adapts::Int64, verbose::Bool}) @ AbstractMCMC ~/.julia/packages/AbstractMCMC/Qy4Y4/src/sample.jl:151 [35] sample(rng::TaskLocalRNG, model::AbstractMCMC.LogDensityModel{LogDensityProblemsADReverseDiffExt.ReverseDiffLogDensity{JuliaBUGS.BUGSModel{Nothing, @NamedTuple{A::Matrix{Float64}, mu::Vector{Float64}, sigma::Vector{Float64}}, Vector{Function}, Vector{@NamedTuple{}}, @NamedTuple{}}, ReverseDiff.CompiledTape{ReverseDiff.GradientTape{Base.Fix1{typeof(LogDensityProblems.logdensity), JuliaBUGS.BUGSModel{Nothing, @NamedTuple{A::Matrix{Float64}, mu::Vector{Float64}, sigma::Vector{Float64}}, Vector{Function}, Vector{@NamedTuple{}}, @NamedTuple{}}}, ReverseDiff.TrackedArray{Float64, Float64, 1, Vector{Float64}, Vector{Float64}}, ReverseDiff.TrackedReal{Float64, Float64, Nothing}}}}}, sampler::NUTS{Float64, Symbol, Symbol}, N::Int64; n_adapts::Int64, progress::Bool, verbose::Bool, callback::Nothing, kwargs::@Kwargs{chain_type::UnionAll}) @ AdvancedHMC ~/.julia/packages/AdvancedHMC/9NhHg/src/abstractmcmc.jl:81 [36] sample @ ~/.julia/packages/AdvancedHMC/9NhHg/src/abstractmcmc.jl:57 [inlined] [37] #sample#113 @ ~/.julia/packages/AbstractMCMC/Qy4Y4/src/logdensityproblems.jl:46 [inlined] [38] sample @ ~/.julia/packages/AbstractMCMC/Qy4Y4/src/logdensityproblems.jl:43 [inlined] [39] #sample#19 @ ~/.julia/packages/AbstractMCMC/Qy4Y4/src/sample.jl:23 [inlined] [40] top-level scope @ ~/.julia/packages/JuliaBUGS/iDTyw/test/ext/mcmchains.jl:3 [41] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1859 [inlined] [42] macro expansion @ ~/.julia/packages/JuliaBUGS/iDTyw/test/ext/mcmchains.jl:108 [inlined] [43] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [44] top-level scope @ ~/.julia/packages/JuliaBUGS/iDTyw/test/runtests.jl:73 [45] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [46] top-level scope @ none:6 [47] eval(m::Module, e::Any) @ Core ./boot.jl:489 [48] exec_options(opts::Base.JLOptions) @ Base ./client.jl:286 [49] _start() @ Base ./client.jl:553 Test Summary: | Pass Error Total Time MCMCChains extension | 12 1 13 1m14.6s RNG of the outermost testset: Xoshiro(0xfd39f206d6cd497d, 0x7ba45153f660ff77, 0x796789702e706f83, 0xa96c229e93932f53, 0x71218789ab28c0b6) ERROR: LoadError: Some tests did not pass: 12 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/JuliaBUGS/iDTyw/test/ext/mcmchains.jl:2 in expression starting at /home/pkgeval/.julia/packages/JuliaBUGS/iDTyw/test/runtests.jl:72 Testing failed after 1335.81s ERROR: LoadError: Package JuliaBUGS errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2695 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2544 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:538 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:168 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [7] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:155 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:311 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:320 [12] _start() @ Base ./client.jl:553 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 2232.51s: package tests unexpectedly errored