Package evaluation to test Pathogen on Julia 1.14.0-DEV.2360 (7c0e770819*) started at 2026-06-13T18:24:44.049 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 14.47s ################################################################################ # Installation # Installing Pathogen... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [c8189ad9] + Pathogen v0.4.13 Updating `~/.julia/environments/v1.14/Manifest.toml` [1520ce14] + AbstractTrees v0.4.5 [66dad0bd] + AliasTables v1.1.3 [34da2185] + Compat v4.18.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.2 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [31c24e10] + Distributions v0.25.126 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.16.0 [34004b35] + HypergeometricFunctions v0.3.28 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.8.0 [b964fa9f] + LaTeXStrings v1.4.0 [2ab3a3ac] + LogExpFunctions v1.0.1 [e1d29d7a] + Missings v1.2.0 [a15396b6] + OnlineStats v1.7.4 [925886fa] + OnlineStatsBase v1.7.3 ⌅ [bac558e1] + OrderedCollections v1.8.2 ⌃ [90014a1f] + PDMats v0.11.35 [c8189ad9] + Pathogen v0.4.13 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [08abe8d2] + PrettyTables v3.3.2 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.3 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [79098fc4] + Rmath v0.9.0 [91c51154] + SentinelArrays v1.4.10 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.8.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 ⌅ [2913bbd2] + StatsBase v0.33.10 [4c63d2b9] + StatsFuns v2.1.0 [892a3eda] + StringManipulation v0.4.4 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.14.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.13.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.2+0 [4536629a] + OpenBLAS_jll v0.3.33+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 6.78s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling project... 3.8 s ✓ OnlineStatsBase 6.8 s ✓ OnlineStats WARNING: Constructor for type "UInt8" was extended in `Pathogen` without explicit qualification or import.  NOTE: Assumed "UInt8" refers to `Base.UInt8`. This behavior is deprecated and may differ in future versions.  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function UInt8 end`.  Hint: To silence the warning, qualify `UInt8` as `Base.UInt8` in the method signature or explicitly `import Base: UInt8`. WARNING: method definition for generate at /home/pkgeval/.julia/packages/Pathogen/0VMLl/src/inference/generate.jl:1 declares type variable T but does not use it. WARNING: method definition for generate at /home/pkgeval/.julia/packages/Pathogen/0VMLl/src/inference/generate.jl:20 declares type variable T but does not use it. WARNING: method definition for apply_recipe at /home/pkgeval/.julia/packages/RecipesBase/BRe07/src/RecipesBase.jl:296 declares type variable T but does not use it. WARNING: method definition for apply_recipe at /home/pkgeval/.julia/packages/RecipesBase/BRe07/src/RecipesBase.jl:296 declares type variable T but does not use it. WARNING: method definition for apply_recipe at /home/pkgeval/.julia/packages/RecipesBase/BRe07/src/RecipesBase.jl:296 declares type variable T but does not use it. 12.9 s ✓ Pathogen 3 dependencies successfully precompiled in 24 seconds. 72 already precompiled. 1 dependency had output during precompilation: ┌ Pathogen │ WARNING: Constructor for type "UInt8" was extended in `Pathogen` without explicit qualification or import. │ NOTE: Assumed "UInt8" refers to `Base.UInt8`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function UInt8 end`. │ Hint: To silence the warning, qualify `UInt8` as `Base.UInt8` in the method signature or explicitly `import Base: UInt8`. │ WARNING: method definition for generate at /home/pkgeval/.julia/packages/Pathogen/0VMLl/src/inference/generate.jl:1 declares type variable T but does not use it. │ WARNING: method definition for generate at /home/pkgeval/.julia/packages/Pathogen/0VMLl/src/inference/generate.jl:20 declares type variable T but does not use it. │ WARNING: method definition for apply_recipe at /home/pkgeval/.julia/packages/RecipesBase/BRe07/src/RecipesBase.jl:296 declares type variable T but does not use it. │ WARNING: method definition for apply_recipe at /home/pkgeval/.julia/packages/RecipesBase/BRe07/src/RecipesBase.jl:296 declares type variable T but does not use it. │ WARNING: method definition for apply_recipe at /home/pkgeval/.julia/packages/RecipesBase/BRe07/src/RecipesBase.jl:296 declares type variable T but does not use it. └ Precompilation completed after 51.52s ################################################################################ # Testing # Testing Pathogen Status `/tmp/jl_DMc6o8/Project.toml` [a93c6f00] DataFrames v1.8.2 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.126 [a15396b6] OnlineStats v1.7.4 [c8189ad9] Pathogen v0.4.13 [92933f4c] ProgressMeter v1.11.0 [3cdcf5f2] RecipesBase v1.3.4 [10745b16] Statistics v1.11.1 ⌅ [2913bbd2] StatsBase v0.33.10 [8ba89e20] Distributed v1.11.0 [37e2e46d] LinearAlgebra v1.14.0 [56ddb016] Logging v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_DMc6o8/Manifest.toml` [1520ce14] AbstractTrees v0.4.5 [66dad0bd] AliasTables v1.1.3 [34da2185] Compat v4.18.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.2 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.126 [ffbed154] DocStringExtensions v0.9.5 [1a297f60] FillArrays v1.16.0 [34004b35] HypergeometricFunctions v0.3.28 [842dd82b] InlineStrings v1.4.5 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.8.0 [b964fa9f] LaTeXStrings v1.4.0 [2ab3a3ac] LogExpFunctions v1.0.1 [e1d29d7a] Missings v1.2.0 [a15396b6] OnlineStats v1.7.4 [925886fa] OnlineStatsBase v1.7.3 ⌅ [bac558e1] OrderedCollections v1.8.2 ⌃ [90014a1f] PDMats v0.11.35 [c8189ad9] Pathogen v0.4.13 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [08abe8d2] PrettyTables v3.3.2 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.4.0 [1fd47b50] QuadGK v2.11.3 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [79098fc4] Rmath v0.9.0 [91c51154] SentinelArrays v1.4.10 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.8.0 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 ⌅ [2913bbd2] StatsBase v0.33.10 [4c63d2b9] StatsFuns v2.1.0 [892a3eda] StringManipulation v0.4.4 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.14.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.13.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.5.2+0 [4536629a] OpenBLAS_jll v0.3.33+0 [05823500] OpenLibm_jll v0.8.7+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [8e850b90] libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... ┌ Warning: accessing `Type.name` is deprecated without replacement. If for detection, use `Base.isType(x)`. │ caller = ProgressMeter.Progress(n::Int64, desc::String, offset::Int64; kwargs::Base.Pairs{Symbol, Union{}, Nothing, @NamedTuple{}}) at deprecated.jl:5 └ @ ProgressMeter ~/.julia/packages/ProgressMeter/N660J/src/deprecated.jl:5 ┌ Warning: `Progress(n::Integer, desc::AbstractString, offset::Integer = 0; kwargs...)` is deprecated, use `Progress(n; desc = desc, offset = offset, kwargs...)` instead. │ caller = ip:0x0 └ @ Core :-1 Initialization progress 1%|▏ | ETA: 4:36:23 Initialization progress 100%|████████████████████████████| Time: 0:01:52 MCMC progress 1%|▎ | ETA: 2:37:20 MCMC progress 9%|███▌ | ETA: 0:10:16 MCMC progress 18%|██████▊ | ETA: 0:04:56 MCMC progress 26%|█████████▉ | ETA: 0:03:01 MCMC progress 35%|█████████████▏ | ETA: 0:02:00 MCMC progress 44%|████████████████▋ | ETA: 0:01:22 MCMC progress 52%|███████████████████▉ | ETA: 0:00:58 MCMC progress 61%|███████████████████████▏ | ETA: 0:00:41 MCMC progress 70%|██████████████████████████▋ | ETA: 0:00:28 MCMC progress 79%|██████████████████████████████ | ETA: 0:00:17 MCMC progress 88%|█████████████████████████████████▍ | ETA: 0:00:09 MCMC progress 96%|████████████████████████████████████▍ | ETA: 0:00:03 MCMC progress 100%|██████████████████████████████████████| Time: 0:01:12 Initialization progress 2%|▌ | ETA: 0:01:18 Initialization progress 100%|████████████████████████████| Time: 0:00:01 MCMC progress 2%|▊ | ETA: 0:02:46 MCMC progress 47%|█████████████████▉ | ETA: 0:00:04 MCMC progress 92%|███████████████████████████████████ | ETA: 0:00:00 MCMC progress 100%|██████████████████████████████████████| Time: 0:00:03 Test Summary: | Pass Total Time SEIR Model | 91 91 4m36.7s Initialization progress 1%|▏ | ETA: 1:31:14 Initialization progress 29%|████████ | ETA: 0:01:32 Initialization progress 58%|████████████████▏ | ETA: 0:00:27 Initialization progress 86%|████████████████████████▏ | ETA: 0:00:06 Initialization progress 100%|████████████████████████████| Time: 0:00:37 MCMC progress 1%|▎ | ETA: 1:07:24 MCMC progress 11%|████ | ETA: 0:03:48 MCMC progress 21%|████████ | ETA: 0:01:43 MCMC progress 32%|████████████ | ETA: 0:00:59 MCMC progress 42%|████████████████▏ | ETA: 0:00:38 MCMC progress 53%|████████████████████▎ | ETA: 0:00:24 MCMC progress 65%|████████████████████████▋ | ETA: 0:00:15 MCMC progress 76%|████████████████████████████▊ | ETA: 0:00:09 MCMC progress 87%|█████████████████████████████████ | ETA: 0:00:04 MCMC progress 95%|████████████████████████████████████▎ | ETA: 0:00:01 MCMC progress 100%|██████████████████████████████████████| Time: 0:00:28 MCMC progress 6%|██▎ | ETA: 0:00:02 MCMC progress 44%|████████████████▊ | ETA: 0:00:00 MCMC progress 100%|██████████████████████████████████████| Time: 0:00:00 Test Summary: | Pass Total Time SEI Model | 171 171 1m34.9s Initialization progress 1%|▏ | ETA: 1:36:56 Initialization progress 26%|███████▎ | ETA: 0:01:51 Initialization progress 53%|██████████████▊ | ETA: 0:00:35 Initialization progress 81%|██████████████████████▋ | ETA: 0:00:09 Initialization progress 100%|████████████████████████████| Time: 0:00:39 MCMC progress 1%|▎ | ETA: 1:09:55 MCMC progress 11%|████▏ | ETA: 0:03:49 MCMC progress 20%|███████▋ | ETA: 0:01:54 MCMC progress 29%|███████████ | ETA: 0:01:10 MCMC progress 38%|██████████████▌ | ETA: 0:00:47 MCMC progress 46%|█████████████████▍ | ETA: 0:00:34 MCMC progress 56%|█████████████████████▎ | ETA: 0:00:23 MCMC progress 65%|████████████████████████▊ | ETA: 0:00:16 MCMC progress 75%|████████████████████████████▍ | ETA: 0:00:10 MCMC progress 84%|███████████████████████████████▊ | ETA: 0:00:06 MCMC progress 92%|███████████████████████████████████ | ETA: 0:00:03 MCMC progress 100%|██████████████████████████████████████| Time: 0:00:30 MCMC progress 2%|▊ | ETA: 0:00:05 MCMC progress 49%|██████████████████▋ | ETA: 0:00:00 MCMC progress 94%|███████████████████████████████████▊ | ETA: 0:00:00 MCMC progress 100%|██████████████████████████████████████| Time: 0:00:00 Test Summary: | Pass Total Time SIR Model | 175 175 1m41.7s Initialization progress 1%|▏ | ETA: 1:30:27 Initialization progress 29%|████████▏ | ETA: 0:01:29 Initialization progress 58%|████████████████▏ | ETA: 0:00:27 Initialization progress 89%|████████████████████████▉ | ETA: 0:00:05 Initialization progress 100%|████████████████████████████| Time: 0:00:37 MCMC progress 1%|▎ | ETA: 1:00:59 MCMC progress 11%|████▎ | ETA: 0:03:13 MCMC progress 22%|████████▌ | ETA: 0:01:26 MCMC progress 33%|████████████▍ | ETA: 0:00:51 MCMC progress 42%|████████████████ | ETA: 0:00:35 MCMC progress 52%|███████████████████▊ | ETA: 0:00:23 MCMC progress 62%|███████████████████████▌ | ETA: 0:00:15 MCMC progress 72%|███████████████████████████▍ | ETA: 0:00:10 MCMC progress 82%|███████████████████████████████▎ | ETA: 0:00:05 MCMC progress 92%|███████████████████████████████████ | ETA: 0:00:02 MCMC progress 100%|██████████████████████████████████████| Time: 0:00:26 MCMC progress 2%|▊ | ETA: 0:00:10 MCMC progress 61%|███████████████████████▏ | ETA: 0:00:00 MCMC progress 100%|██████████████████████████████████████| Time: 0:00:00 Test Summary: | Pass Total Time SI Model | 104 104 1m31.7s Testing Pathogen tests passed Testing completed after 530.51s PkgEval succeeded after 767.82s