Package evaluation to load GNNlib on Julia 1.14.0-DEV.2373 (cf67ecc88f*) started at 2026-06-13T22:06:40.756 ################################################################################ # Set-up # Set-up completed after 0.12s ################################################################################ # Installation # Installing GNNlib... Resolving package versions... Installed CompositionsBase ──────────── v0.1.2 Installed NameResolution ────────────── v0.1.5 Installed DefineSingletons ──────────── v0.1.2 Installed MicroCollections ──────────── v0.2.0 Installed DataStructures ────────────── v0.19.5 Installed MLDataDevices ─────────────── v1.17.10 Installed MacroTools ────────────────── v0.5.16 Installed GNNlib ────────────────────── v1.2.1 Installed AbstractTrees ─────────────── v0.4.5 Installed Adapt ─────────────────────── v4.6.1 Installed DelimitedFiles ────────────── v1.9.1 Installed ConstructionBase ──────────── v1.6.0 Installed ContextVariablesX ─────────── v0.1.3 Installed ArnoldiMethod ─────────────── v0.4.0 Installed AliasTables ───────────────── v1.1.3 Installed JuliaVariables ────────────── v0.2.4 Installed StatsBase ─────────────────── v0.34.11 Installed FLoops ────────────────────── v0.2.2 Installed HashArrayMappedTries ──────── v0.2.0 Installed OrderedCollections ────────── v1.8.2 Installed Functors ──────────────────── v0.5.2 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed DataAPI ───────────────────── v1.16.0 Installed NearestNeighbors ──────────── v0.4.27 Installed Statistics ────────────────── v1.11.1 Installed GNNGraphs ─────────────────── v1.5.0 Installed Compat ────────────────────── v4.18.1 Installed InitialValues ─────────────── v0.3.1 Installed StatsAPI ──────────────────── v1.8.0 Installed NNlib ─────────────────────── v0.9.36 Installed DataValueInterfaces ───────── v1.0.0 Installed MLCore ────────────────────── v1.0.0 Installed PrecompileTools ───────────── v1.3.4 Installed Atomix ────────────────────── v1.1.3 Installed PrettyPrint ───────────────── v0.2.0 Installed Distances ─────────────────── v0.10.12 Installed KrylovKit ─────────────────── v0.9.5 Installed ArgCheck ──────────────────── v2.5.0 Installed GPUArraysCore ─────────────── v0.2.0 Installed StaticArraysCore ──────────── v1.4.4 Installed IrrationalConstants ───────── v0.2.6 Installed MLUtils ───────────────────── v0.4.8 Installed ChainRulesCore ────────────── v1.26.1 Installed StaticArrays ──────────────── v1.9.18 Installed BangBang ──────────────────── v0.4.9 Installed SciMLPublic ───────────────── v1.0.1 Installed SimpleTraits ──────────────── v0.9.6 Installed LogExpFunctions ───────────── v1.0.1 Installed FLoopsBase ────────────────── v0.1.1 Installed PackageExtensionCompat ────── v1.0.2 Installed SplittablesBase ───────────── v0.1.15 Installed Requires ──────────────────── v1.3.1 Installed Tables ────────────────────── v1.12.1 Installed InverseFunctions ──────────── v0.1.17 Installed ScopedValues ──────────────── v1.6.2 Installed PtrArrays ─────────────────── v1.4.0 Installed UnsafeAtomics ─────────────── v0.3.1 Installed Missings ──────────────────── v1.2.0 Installed KernelAbstractions ────────── v0.9.41 Installed Setfield ──────────────────── v1.1.2 Installed Transducers ───────────────── v0.4.85 Installed Preferences ───────────────── v1.5.2 Installed Baselet ───────────────────── v0.1.1 Installed ShowCases ─────────────────── v0.1.0 Installed VectorInterface ───────────── v0.5.0 Installed TableTraits ───────────────── v1.0.1 Installed DocStringExtensions ───────── v0.9.5 Installed Inflate ───────────────────── v0.1.5 Installed SortingAlgorithms ─────────── v1.2.2 Installed MLStyle ───────────────────── v0.4.17 Installed Accessors ─────────────────── v0.1.44 Installed Graphs ────────────────────── v1.14.0 Updating `~/.julia/environments/v1.14/Project.toml` [a6a84749] + GNNlib v1.2.1 Updating `~/.julia/environments/v1.14/Manifest.toml` [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.44 [79e6a3ab] + Adapt v4.6.1 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 [ec485272] + ArnoldiMethod v0.4.0 [a9b6321e] + Atomix v1.1.3 [198e06fe] + BangBang v0.4.9 [9718e550] + Baselet v0.1.1 [d360d2e6] + ChainRulesCore v1.26.1 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [6add18c4] + ContextVariablesX v0.1.3 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.5 [e2d170a0] + DataValueInterfaces v1.0.0 [244e2a9f] + DefineSingletons v0.1.2 [8bb1440f] + DelimitedFiles v1.9.1 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.5 [cc61a311] + FLoops v0.2.2 [b9860ae5] + FLoopsBase v0.1.1 [d9f16b24] + Functors v0.5.2 [aed8fd31] + GNNGraphs v1.5.0 [a6a84749] + GNNlib v1.2.1 [46192b85] + GPUArraysCore v0.2.0 [86223c79] + Graphs v1.14.0 [076d061b] + HashArrayMappedTries v0.2.0 [d25df0c9] + Inflate v0.1.5 [22cec73e] + InitialValues v0.3.1 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [b14d175d] + JuliaVariables v0.2.4 [63c18a36] + KernelAbstractions v0.9.41 ⌅ [0b1a1467] + KrylovKit v0.9.5 [2ab3a3ac] + LogExpFunctions v1.0.1 [c2834f40] + MLCore v1.0.0 [7e8f7934] + MLDataDevices v1.17.10 [d8e11817] + MLStyle v0.4.17 [f1d291b0] + MLUtils v0.4.8 [1914dd2f] + MacroTools v0.5.16 [128add7d] + MicroCollections v0.2.0 [e1d29d7a] + Missings v1.2.0 [872c559c] + NNlib v0.9.36 [71a1bf82] + NameResolution v0.1.5 [b8a86587] + NearestNeighbors v0.4.27 ⌅ [bac558e1] + OrderedCollections v1.8.2 [65ce6f38] + PackageExtensionCompat v1.0.2 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [8162dcfd] + PrettyPrint v0.2.0 [43287f4e] + PtrArrays v1.4.0 [ae029012] + Requires v1.3.1 [431bcebd] + SciMLPublic v1.0.1 [7e506255] + ScopedValues v1.6.2 [efcf1570] + Setfield v1.1.2 [605ecd9f] + ShowCases v0.1.0 [699a6c99] + SimpleTraits v0.9.6 [a2af1166] + SortingAlgorithms v1.2.2 [171d559e] + SplittablesBase v0.1.15 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.11 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [28d57a85] + Transducers v0.4.85 [013be700] + UnsafeAtomics v0.3.1 ⌅ [409d34a3] + VectorInterface v0.5.0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.14.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.13.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.2+0 [4536629a] + OpenBLAS_jll v0.3.33+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 11.55s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Project No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml` Manifest No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml` Precompiling package dependencies... Precompiling project... 2.0 s ✓ Baselet 3.8 s ✓ MacroTools 0.8 s ✓ Adapt 1.1 s ✓ Statistics 1.0 s ✓ DataAPI 0.7 s ✓ SciMLPublic 1.1 s ✓ ConstructionBase 2.3 s ✓ IrrationalConstants 1.1 s ✓ PrettyPrint 0.5 s ✓ DataValueInterfaces 0.9 s ✓ StaticArraysCore 0.6 s ✓ StatsAPI 59.5 s ✓ UnsafeAtomics 133.0 s ✓ OrderedCollections 72.5 s ✓ ShowCases 26.1 s ✓ MLStyle 1.0 s ✓ InverseFunctions 0.8 s ✓ HashArrayMappedTries 0.7 s ✓ CompositionsBase 1.1 s ✓ DocStringExtensions 65.4 s ✓ AbstractTrees 141.1 s ✓ InitialValues 0.6 s ✓ DefineSingletons 0.9 s ✓ Inflate 0.8 s ✓ ArgCheck 33.7 s ✓ PtrArrays 1.2 s ✓ VectorInterface 0.5 s ✓ IteratorInterfaceExtensions 0.5 s ✓ PackageExtensionCompat 1.2 s ✓ Requires 0.9 s ✓ DelimitedFiles 1.4 s ✓ Compat 2.5 s ✓ Preferences 3.0 s ✓ SimpleTraits 1.3 s ✓ GPUArraysCore 34.9 s ✓ Adapt → AdaptSparseArraysExt 37.7 s ✓ Statistics → SparseArraysExt 49.0 s ✓ Missings 0.5 s ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 0.6 s ✓ NameResolution 1.7 s ✓ Distances 33.1 s ✓ Atomix 148.4 s ✓ DataStructures 35.2 s ✓ InverseFunctions → InverseFunctionsTestExt 1.1 s ✓ InverseFunctions → InverseFunctionsDatesExt 0.8 s ✓ ScopedValues 0.5 s ✓ CompositionsBase → CompositionsBaseInverseFunctionsExt 1.5 s ✓ LogExpFunctions 34.9 s ✓ AliasTables 0.5 s ✓ TableTraits 134.8 s ✓ KrylovKit 0.6 s ✓ Compat → CompatLinearAlgebraExt 2.6 s ✓ PrecompileTools 2.9 s ✓ Setfield 12.5 s ✓ JuliaVariables 35.1 s ✓ Distances → DistancesSparseArraysExt 34.1 s ✓ SortingAlgorithms 6.2 s ✓ Accessors 0.6 s ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 128.7 s ✓ Tables 277.0 s ✓ ChainRulesCore 1.1 s ✓ ContextVariablesX 37.4 s ✓ Functors 299.5 s ✓ StaticArrays 67.9 s ✓ SplittablesBase 150.3 s ✓ StatsBase 2.9 s ✓ Accessors → LinearAlgebraExt 33.9 s ✓ Accessors → TestExt 35.4 s ✓ MLCore 49.7 s ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 34.2 s ✓ Distances → DistancesChainRulesCoreExt 37.1 s ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 66.7 s ✓ KrylovKit → KrylovKitChainRulesCoreExt 0.8 s ✓ FLoopsBase 85.2 s ✓ MLDataDevices 34.8 s ✓ StaticArrays → StaticArraysStatisticsExt 65.3 s ✓ StaticArrays → StaticArraysChainRulesCoreExt 36.9 s ✓ ArnoldiMethod 32.8 s ✓ Adapt → AdaptStaticArraysExt  ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ======================================================================================  cmd: /opt/julia/bin/julia 330 running 1 of 1  signal (10): User defined signal 1 unknown function (ip: 0x76c86653390e) at /lib/x86_64-linux-gnu/libc.so.6 unknown function (ip: 0x76c8665345be) at /lib/x86_64-linux-gnu/libc.so.6 unknown function (ip: 0x76c866534c74) at /lib/x86_64-linux-gnu/libc.so.6 posix_memalign at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) jl_malloc_aligned at /source/src/gc-common.h:116:9 [inlined] ijl_gc_managed_malloc at /source/src/gc-stock.c:3929:17 jl_alloc_genericmemory_unchecked at /source/src/genericmemory.c:38:23 GenericMemory at ./boot.jl:659:0 [inlined] copy at ./array.jl:389:0 [inlined] update_bbstate! at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4394:0 (pc: 62) typeinf_local at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4656:0 (pc: 2281) jfptr_typeinf_local_1.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4360:23 [inlined] ijl_apply_generic at /source/src/gf.c:4598:12 typeinf at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4978:0 (pc: 462) typeinf_ext at ./../usr/share/julia/Compiler/src/typeinfer.jl:1537:0 (pc: 150) typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1742:0 [inlined] typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1751:0 (pc: 15) jfptr_typeinf_ext_toplevel_5.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4360:23 [inlined] ijl_apply_generic at /source/src/gf.c:4598:12 jl_apply at /source/src/julia.h:2388:12 [inlined] jl_type_infer at /source/src/gf.c:479:35 jl_compile_method_very_internal at /source/src/gf.c:3923:20 _jl_invoke at /source/src/gf.c:4352:16 [inlined] ijl_apply_generic at /source/src/gf.c:4598:12 jl_apply at /source/src/julia.h:2388:12 [inlined] ijl_lower at /source/src/ast.c:1274:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:598:31 jl_eval_module_expr at /source/src/toplevel.c:263:5 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:665:27 jl_eval_toplevel_stmts at /source/src/toplevel.c:602:15 jl_toplevel_eval_flex at /source/src/toplevel.c:684:27 ijl_toplevel_eval at /source/src/toplevel.c:782:12 ijl_toplevel_eval_in at /source/src/toplevel.c:827:13 eval at ./boot.jl:522:0 (pc: 1) include_string at ./loading.jl:3132:0 (pc: 207) _jl_invoke at /source/src/gf.c:4360:23 [inlined] ijl_apply_generic at /source/src/gf.c:4598:12 _include at ./loading.jl:3192:0 (pc: 122) include at ./Base.jl:325:0 (pc: 1) include_package_for_output at ./loading.jl:3296:0 (pc: 837) jfptr_include_package_for_output_1.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4360:23 [inlined] ijl_apply_generic at /source/src/gf.c:4598:12 jl_apply at /source/src/julia.h:2388:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:243:16 eval_stmt_value at /source/src/interpreter.c:194:23 [inlined] eval_body at /source/src/interpreter.c:706:13 jl_interpret_toplevel_thunk at /source/src/interpreter.c:897:21 ijl_eval_thunk at /source/src/toplevel.c:768:18 jl_toplevel_eval_flex at /source/src/toplevel.c:712:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:602:15 jl_toplevel_eval_flex at /source/src/toplevel.c:684:27 ijl_toplevel_eval at /source/src/toplevel.c:782:12 ijl_toplevel_eval_in at /source/src/toplevel.c:827:13 eval at ./boot.jl:522:0 (pc: 1) include_string at ./loading.jl:3132:0 (pc: 207) include_string at ./loading.jl:3142:0 [inlined] exec_options at ./client.jl:353:0 (pc: 841) _start at ./client.jl:596:0 (pc: 294) jfptr__start_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4360:23 [inlined] ijl_apply_generic at /source/src/gf.c:4598:12 jl_apply at /source/src/julia.h:2388:12 [inlined] true_main at /source/src/jlapi.c:971:29 jl_repl_entrypoint at /source/src/jlapi.c:1138:15 main at /source/cli/loader_exe.c:58:15 unknown function (ip: 0x76c8664c3249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file)   ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ==============================================================  ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 88 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404:0 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430:0 ijl_task_get_next at /source/src/scheduler.c:524:34 wait at ./task.jl:1248:0 (pc: 107) wait_forever at ./task.jl:1170:0 (pc: 4) jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4360:23 [inlined] ijl_apply_generic at /source/src/gf.c:4598:12 jl_apply at /source/src/julia.h:2388:12 [inlined] start_task at /source/src/task.c:1276:19 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007ea50dffdb40 Total snapshots: 362. Utilization: 0% ╎362 @Base/task.jl:1170 wait_forever() 361╎ 362 @Base/task.jl:1248 wait() ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404:0 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430:0 ijl_task_get_next at /source/src/scheduler.c:524:34 wait at ./task.jl:1248:0 (pc: 107) wait_forever at ./task.jl:1170:0 (pc: 4) jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4360:23 [inlined] ijl_apply_generic at /source/src/gf.c:4598:12 jl_apply at /source/src/julia.h:2388:12 [inlined] start_task at /source/src/task.c:1276:19 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007d225ede8880 Total snapshots: 335. Utilization: 0% ╎335 @Base/task.jl:1170 wait_forever() 334╎ 335 @Base/task.jl:1248 wait() [88] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/precompile.jl:34 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404:0 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430:0 ijl_task_get_next at /source/src/scheduler.c:524:34 wait at ./task.jl:1248:0 (pc: 107) wait_forever at ./task.jl:1170:0 (pc: 4) jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4360:23 [inlined] ijl_apply_generic at /source/src/gf.c:4598:12 jl_apply at /source/src/julia.h:2388:12 [inlined] start_task at /source/src/task.c:1276:19 unknown function (ip: (nil)) at (unknown file) Allocations: 4459618 (Pool: 4459422; Big: 196); GC: 7 val already in a list atexit hook threw an error: ErrorException("schedule: Task not runnable") error at ./error.jl:56:0 (pc: 6) PkgEval terminated after 2731.22s: test duration exceeded the time limit