Package evaluation of TemporalNetworks on Julia 1.13.0-DEV.111 (ce76dbf07d*) started at 2025-02-28T10:45:31.387 ################################################################################ # Set-up # Set-up completed after 0.22s ################################################################################ # Installation # Installing TemporalNetworks... Resolving package versions... Installed Conda ── v1.10.2 Installed PyCall ─ v1.96.4 Updating `~/.julia/environments/v1.13/Project.toml` [8c7a6a83] + TemporalNetworks v1.0.0 Updating `~/.julia/environments/v1.13/Manifest.toml` [47edcb42] + ADTypes v1.13.0 [a4c015fc] + ANSIColoredPrinters v0.0.1 [621f4979] + AbstractFFTs v1.5.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.2.0 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [7d9fca2a] + Arpack v0.5.4 [4fba245c] + ArrayInterface v7.18.0 [4c555306] + ArrayLayouts v1.11.1 [13072b0f] + AxisAlgorithms v1.1.0 [6e4b80f9] + BenchmarkTools v1.6.0 [d1d4a3ce] + BitFlags v0.1.9 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [2a0fbf3d] + CPUSummary v0.2.6 [336ed68f] + CSV v0.10.15 [d360d2e6] + ChainRulesCore v1.25.1 [fb6a15b2] + CloseOpenIntervals v0.1.13 [aaaa29a8] + Clustering v0.15.8 [523fee87] + CodecBzip2 v0.8.5 [944b1d66] + CodecZlib v0.7.8 [35d6a980] + ColorSchemes v3.29.0 ⌅ [3da002f7] + ColorTypes v0.11.5 ⌃ 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SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.11.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2024.12.31 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [efcefdf7] + PCRE2_jll v10.44.0+1 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Building Conda ─→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/b19db3927f0db4151cb86d073689f2428e524576/build.log` Building PyCall → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/9816a3826b0ebf49ab4926e2b18842ad8b5c8f04/build.log` Installation completed after 65.57s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml` No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml` Precompiling package dependencies... Precompiling packages... 34750.2 ms ✓ SciMLBase ✗ Pluto 68941.7 ms ✓ GraphRecipes 24456.4 ms ✓ Plots → GeometryBasicsExt 89307.8 ms ✓ SciMLBase → SciMLBasePythonCallExt 52321.4 ms ✓ SciMLBase → SciMLBasePyCallExt 3954.3 ms ✓ SciMLBase → SciMLBaseChainRulesCoreExt 115888.1 ms ✓ LinearSolve 18629.0 ms ✓ LinearSolve → LinearSolveIterativeSolversExt 22211.5 ms ✓ LinearSolve → LinearSolveKrylovKitExt 16793.2 ms ✓ LinearSolve → LinearSolveRecursiveArrayToolsExt 50036.1 ms ? TemporalNetworks 10 dependencies successfully precompiled in 533 seconds. 415 already precompiled. 1 dependencies failed but may be precompilable after restarting julia 2 dependencies had output during precompilation: ┌ TemporalNetworks │ WARNING: Method definition adapt_structure(Any, OffsetArrays.OffsetArray{T, N, AA} where AA<:AbstractArray{T, N} where N where T) in module OffsetArraysAdaptExt at /home/pkgeval/.julia/packages/OffsetArrays/HLmxQ/ext/OffsetArraysAdaptExt.jl:9 overwritten in module OffsetArraysAdaptExt on the same line (check for duplicate calls to `include`). │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ SciMLBase → SciMLBasePythonCallExt │ CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/WMWY0/CondaPkg.toml │ CondaPkg Found dependencies: /home/pkgeval/.julia/packages/TemporalNetworks/fp0ch/CondaPkg.toml │ CondaPkg Resolving changes │ + igraph (pip) │ + leidenalg (pip) │ + libstdcxx-ng │ + openssl │ + python │ + uv │ CondaPkg Initialising pixi │ │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ │ init │ │ --format pixi │ └ /home/pkgeval/.julia/environments/v1.13/.CondaPkg │ ✔ Created /home/pkgeval/.julia/environments/v1.13/.CondaPkg/pixi.toml │ CondaPkg Wrote /home/pkgeval/.julia/environments/v1.13/.CondaPkg/pixi.toml │ │ [dependencies] │ │ openssl = ">=3, <3.1" │ │ uv = ">=0.4" │ │ libstdcxx-ng = ">=3.4,<13.0" │ │ │ │ [dependencies.python] │ │ channel = "conda-forge" │ │ build = "*cpython*" │ │ version = ">=3.8,<4" │ │ │ │ [project] │ │ name = ".CondaPkg" │ │ platforms = ["linux-64"] │ │ channels = ["conda-forge"] │ │ channel-priority = "disabled" │ │ description = "automatically generated by CondaPkg.jl" │ │ │ │ [pypi-dependencies] │ │ leidenalg = "*" │ └ igraph = "*" │ CondaPkg Installing packages │ │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ │ install │ └ --manifest-path /home/pkgeval/.julia/environments/v1.13/.CondaPkg/pixi.toml │ ✔ The default environment has been installed. └ Precompilation completed after 540.17s ################################################################################ # Loading # Loading TemporalNetworks... Precompiling packages... ✗ Pluto 55110.7 ms ✓ SciMLBase → SciMLBasePyCallExt 65066.9 ms ✓ SciMLBase → SciMLBasePythonCallExt Info Given TemporalNetworks was explicitly requested, output will be shown live  WARNING: Method definition (::Type{PDMats.AbstractPDMat{T} where T<:Real})(LinearAlgebra.Diagonal{T, var"#s1"} where var"#s1"<:(FillArrays.AbstractFill{T, 1, Axes} where Axes)) where {T<:Real} in module FillArraysPDMatsExt at /home/pkgeval/.julia/packages/FillArrays/lVl4c/ext/FillArraysPDMatsExt.jl:7 overwritten in module FillArraysPDMatsExt on the same line (check for duplicate calls to `include`). ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 534361.2 ms ? TemporalNetworks 2 dependencies successfully precompiled in 686 seconds. 423 already precompiled. 1 dependencies failed but may be precompilable after restarting julia 1 dependency had output during precompilation: ┌ TemporalNetworks │ [Output was shown above] └ Loading completed after 888.67s PkgEval succeeded after 1522.29s