Package evaluation of ReactionNetworkEvolution on Julia 1.13.0-DEV.111 (ce76dbf07d*) started at 2025-02-28T09:29:13.155 ################################################################################ # Set-up # Set-up completed after 0.26s ################################################################################ # Installation # Installing ReactionNetworkEvolution... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [61220d1e] + ReactionNetworkEvolution v0.1.5 Updating `~/.julia/environments/v1.13/Manifest.toml` ⌅ [79e6a3ab] + Adapt v3.7.2 [66dad0bd] + AliasTables v1.1.3 [c7e460c6] + ArgParse v1.2.0 [ec485272] + ArnoldiMethod v0.4.0 ⌅ [4fba245c] + ArrayInterface v6.0.25 [30b0a656] + ArrayInterfaceCore v0.1.29 [6ba088a2] + ArrayInterfaceGPUArrays v0.2.2 [015c0d05] + ArrayInterfaceOffsetArrays v0.1.7 [b0d46f97] + ArrayInterfaceStaticArrays v0.1.5 [dd5226c6] + ArrayInterfaceStaticArraysCore v0.1.4 ⌃ [4c555306] + ArrayLayouts v0.8.19 ⌅ [aae01518] + BandedMatrices v0.17.18 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 ⌅ [764a87c0] + BoundaryValueDiffEq v2.11.0 ⌅ [fa961155] + CEnum v0.4.2 ⌅ [2a0fbf3d] + CPUSummary v0.1.30 [336ed68f] + CSV v0.10.15 [d360d2e6] + ChainRulesCore v1.25.1 ⌃ [fb6a15b2] + CloseOpenIntervals v0.1.11 [944b1d66] + CodecZlib v0.7.8 [861a8166] + Combinatorics v1.0.2 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.16.0 [187b0558] + ConstructionBase v1.5.8 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.20 [e2d170a0] + DataValueInterfaces v1.0.0 ⌃ [bcd4f6db] + DelayDiffEq v5.41.1 ⌅ [2b5f629d] + DiffEqBase v6.108.0 ⌅ [459566f4] + DiffEqCallbacks v2.26.1 [77a26b50] + DiffEqNoiseProcess v5.24.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 ⌃ [0c46a032] + DifferentialEquations v7.6.0 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.117 ⌅ [ffbed154] + DocStringExtensions v0.8.6 ⌅ [e30172f5] + Documenter v0.25.5 [4e289a0a] + EnumX v1.0.4 ⌃ [d4d017d3] + ExponentialUtilities v1.23.0 [e2ba6199] + ExprTools v0.1.10 ⌅ [7034ab61] + FastBroadcast v0.2.4 [9aa1b823] + FastClosures v0.3.2 ⌅ [29a986be] + FastLapackInterface v1.2.9 [48062228] + FilePathsBase v0.9.23 ⌅ [1a297f60] + FillArrays v0.13.11 ⌃ [6a86dc24] + FiniteDiff v2.17.0 [f6369f11] + ForwardDiff v0.10.38 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 ⌅ [46192b85] + GPUArraysCore v0.1.5 [c145ed77] + GenericSchur v0.5.4 [86223c79] + Graphs v1.12.0 [3e5b6fbb] + HostCPUFeatures v0.1.17 [34004b35] + HypergeometricFunctions v0.3.27 ⌅ [b5f81e59] + IOCapture v0.1.1 [615f187c] + IfElse v0.1.1 [d25df0c9] + Inflate v0.1.5 [842dd82b] + InlineStrings v1.4.3 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [42fd0dbc] + IterativeSolvers v0.9.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 ⌃ [ccbc3e58] + JumpProcesses v9.5.1 ⌅ [ef3ab10e] + KLU v0.4.1 [ba0b0d4f] + Krylov v0.9.10 ⌅ [0b1a1467] + KrylovKit v0.6.1 [b964fa9f] + LaTeXStrings v1.4.0 ⌃ [10f19ff3] + LayoutPointers v0.1.13 [2d8b4e74] + LevyArea v1.0.0 [d3d80556] + LineSearches v7.3.0 ⌅ [7ed4a6bd] + LinearSolve v1.34.1 [2ab3a3ac] + LogExpFunctions v0.3.29 ⌃ [bdcacae8] + LoopVectorization v0.12.150 [1914dd2f] + MacroTools v0.5.15 [d125e4d3] + ManualMemory v0.1.8 [e1d29d7a] + Missings v1.2.0 [46d2c3a1] + MuladdMacro v0.2.4 [d41bc354] + NLSolversBase v7.8.3 [2774e3e8] + NLsolve v4.5.1 [77ba4419] + NaNMath v1.1.2 [6fe1bfb0] + OffsetArrays v1.15.0 [429524aa] + Optim v1.11.0 [bac558e1] + OrderedCollections v1.8.0 ⌃ [1dea7af3] + OrdinaryDiffEq v6.33.3 [90014a1f] + PDMats v0.11.32 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.1 [e409e4f3] + PoissonRandom v0.4.4 ⌅ [f517fe37] + Polyester v0.6.20 ⌅ [1d0040c9] + PolyesterWeave v0.1.13 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 ⌃ [d236fae5] + PreallocationTools v0.4.11 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [74087812] + Random123 v1.7.0 [e6cf234a] + RandomNumbers v1.6.0 [61220d1e] + ReactionNetworkEvolution v0.1.5 [3cdcf5f2] + RecipesBase v1.3.4 ⌅ [731186ca] + RecursiveArrayTools v2.32.3 ⌃ [f2c3362d] + RecursiveFactorization v0.2.22 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [ae5879a3] + ResettableStacks v1.1.1 [79098fc4] + Rmath v0.8.0 [e916ade1] + RoadRunner v2.7.1 [7e49a35a] + RuntimeGeneratedFunctions v0.5.13 [94e857df] + SIMDTypes v0.1.0 [476501e8] + SLEEFPirates v0.6.43 ⌅ [0bca4576] + SciMLBase v1.81.0 [91c51154] + SentinelArrays v1.4.8 [efcf1570] + Setfield v1.1.2 ⌅ [727e6d20] + SimpleNonlinearSolve v0.1.5 [699a6c99] + SimpleTraits v0.9.4 [ce78b400] + SimpleUnPack v1.1.0 [66db9d55] + SnoopPrecompile v1.0.3 [a2af1166] + SortingAlgorithms v1.2.1 ⌅ [47a9eef4] + SparseDiffTools v1.30.0 [e56a9233] + Sparspak v0.3.9 [276daf66] + SpecialFunctions v2.5.0 ⌅ [aedffcd0] + Static v0.8.10 [90137ffa] + StaticArrays v1.9.12 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [4c63d2b9] + StatsFuns v1.3.2 ⌅ [9672c7b4] + SteadyStateDiffEq v1.12.0 ⌃ [789caeaf] + StochasticDiffEq v6.58.0 ⌅ [7792a7ef] + StrideArraysCore v0.4.7 [892a3eda] + StringManipulation v0.4.1 ⌃ [c3572dad] + Sundials v4.15.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [b718987f] + TextWrap v1.0.2 [8290d209] + ThreadingUtilities v0.5.2 [3bb67fe8] + TranscodingStreams v0.11.3 [a2a6695c] + TreeViews v0.3.0 ⌅ [d5829a12] + TriangularSolve v0.1.21 [410a4b4d] + Tricks v0.1.10 [3a884ed6] + UnPack v1.0.2 ⌃ [3d5dd08c] + VectorizationBase v0.21.58 [19fa3120] + VertexSafeGraphs v0.2.0 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [700de1a5] + ZygoteRules v0.2.7 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 ⌅ [fb77eaff] + Sundials_jll v5.2.3+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 7.19s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml` No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml` Precompiling package dependencies... Precompiling packages... 6221.4 ms ✓ CPUSummary 1858.0 ms ✓ LevyArea 3949.6 ms ✓ CloseOpenIntervals 25326.1 ms ✓ SciMLBase 46875.2 ms ✓ ExponentialUtilities 2858.3 ms ✓ FiniteDiff 8981.8 ms ✓ PreallocationTools 5225.3 ms ✓ LayoutPointers 16347.8 ms ✓ Distributions 4922.3 ms ✓ PolyesterWeave 33979.0 ms ✓ NLSolversBase 46628.5 ms ✓ SimpleNonlinearSolve 40328.7 ms ✓ SparseDiffTools ✗ VectorizationBase 10746.1 ms ✓ StrideArraysCore 5408.6 ms ✓ Distributions → DistributionsTestExt 5344.0 ms ✓ Distributions → DistributionsChainRulesCoreExt 8494.8 ms ✓ LineSearches ✗ SLEEFPirates 4608.5 ms ✓ Polyester 6747.3 ms ✓ NLsolve 23546.5 ms ✓ Optim ✗ LoopVectorization 4383.4 ms ✓ FastBroadcast ✗ LoopVectorization → SpecialFunctionsExt ✗ LoopVectorization → ForwardDiffExt ✗ TriangularSolve 107911.0 ms ✓ DiffEqBase ✗ RecursiveFactorization 229453.9 ms ✓ DiffEqNoiseProcess 67422.9 ms ✓ BoundaryValueDiffEq 11665.8 ms ✓ DiffEqCallbacks 31582.0 ms ✓ Sundials 13210.8 ms ✓ JumpProcesses ✗ LinearSolve 11959.0 ms ✓ SteadyStateDiffEq ✗ OrdinaryDiffEq ✗ DelayDiffEq ✗ StochasticDiffEq ✗ DifferentialEquations ✗ ReactionNetworkEvolution 28 dependencies successfully precompiled in 1190 seconds. 168 already precompiled. 1 dependency had output during precompilation: ┌ BoundaryValueDiffEq │ WARNING: Constructor for type "AbstractMatrix" was extended in `BandedMatrices` without explicit qualification or import. │ NOTE: Assumed "AbstractMatrix" refers to `Base.AbstractMatrix`. This behavior is deprecated and may differ in future versions.` │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function AbstractMatrix end`. │ Hint: To silence the warning, qualify `AbstractMatrix` as `Base.AbstractMatrix` or explicitly `import Base: AbstractMatrix` │ WARNING: Constructor for type "AbstractArray" was extended in `BandedMatrices` without explicit qualification or import. │ NOTE: Assumed "AbstractArray" refers to `Base.AbstractArray`. This behavior is deprecated and may differ in future versions.` │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function AbstractArray end`. │ Hint: To silence the warning, qualify `AbstractArray` as `Base.AbstractArray` or explicitly `import Base: AbstractArray` │ WARNING: Constructor for type "Matrix" was extended in `BandedMatrices` without explicit qualification or import. │ NOTE: Assumed "Matrix" refers to `Base.Matrix`. This behavior is deprecated and may differ in future versions.` │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Matrix end`. │ Hint: To silence the warning, qualify `Matrix` as `Base.Matrix` or explicitly `import Base: Matrix` └ ERROR: LoadError: The following 1 direct dependency failed to precompile: ReactionNetworkEvolution Failed to precompile ReactionNetworkEvolution [61220d1e-4cdb-4fc3-9e6c-02bd7f830b85] to "/home/pkgeval/.julia/compiled/v1.13/ReactionNetworkEvolution/jl_O1RPq5" (ProcessExited(1)). julia: /source/src/method.c:428: jl_new_code_info_from_ir: Assertion `(((jl_array_t*)(((jl_expr_t*)(ma))->args))->dimsize[0]) == 0' failed. [565] signal 6 (-6): Aborted in expression starting at none:1 unknown function (ip: 0x756c6f385ebc) at /lib/x86_64-linux-gnu/libc.so.6 gsignal at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) abort at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x756c6f321394) at /lib/x86_64-linux-gnu/libc.so.6 __assert_fail at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) jl_new_code_info_from_ir at /source/src/method.c:428 scm_to_julia_ at /source/src/ast.c:650 scm_to_julia_ at /source/src/ast.c:646 scm_to_julia_ at /source/src/ast.c:646 scm_to_julia_ at /source/src/ast.c:646 scm_to_julia_ at /source/src/ast.c:646 scm_to_julia at /source/src/ast.c:472 ijl_expand_with_loc_warn at /source/src/ast.c:1320 jl_toplevel_eval_flex at /source/src/toplevel.c:820 ijl_toplevel_eval at /source/src/toplevel.c:1044 ijl_toplevel_eval_in at /source/src/toplevel.c:1089 eval at ./boot.jl:488 jfptr_eval_63460.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 jl_apply at /source/src/julia.h:2359 [inlined] do_call at /source/src/interpreter.c:124 eval_value at /source/src/interpreter.c:242 eval_stmt_value at /source/src/interpreter.c:193 [inlined] eval_body at /source/src/interpreter.c:692 jl_interpret_toplevel_thunk at /source/src/interpreter.c:897 jl_toplevel_eval_flex at /source/src/toplevel.c:1032 jl_toplevel_eval_flex at /source/src/toplevel.c:972 ijl_toplevel_eval at /source/src/toplevel.c:1044 ijl_toplevel_eval_in at /source/src/toplevel.c:1089 eval at ./boot.jl:488 include_string at ./loading.jl:2855 _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 _include at ./loading.jl:2915 include at ./Base.jl:308 IncludeInto at ./Base.jl:309 jfptr_IncludeInto_115428.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 jl_apply at /source/src/julia.h:2359 [inlined] do_call at /source/src/interpreter.c:124 eval_value at /source/src/interpreter.c:242 eval_stmt_value at /source/src/interpreter.c:193 [inlined] eval_body at /source/src/interpreter.c:692 jl_interpret_toplevel_thunk at /source/src/interpreter.c:897 jl_toplevel_eval_flex at /source/src/toplevel.c:1032 jl_eval_module_expr at /source/src/toplevel.c:210 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:826 jl_toplevel_eval_flex at /source/src/toplevel.c:972 ijl_toplevel_eval at /source/src/toplevel.c:1044 ijl_toplevel_eval_in at /source/src/toplevel.c:1089 eval at ./boot.jl:488 include_string at ./loading.jl:2855 _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 _include at ./loading.jl:2915 include at ./Base.jl:307 include_package_for_output at ./loading.jl:3004 jfptr_include_package_for_output_65243.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 jl_apply at /source/src/julia.h:2359 [inlined] do_call at /source/src/interpreter.c:124 eval_value at /source/src/interpreter.c:242 eval_stmt_value at /source/src/interpreter.c:193 [inlined] eval_body at /source/src/interpreter.c:692 jl_interpret_toplevel_thunk at /source/src/interpreter.c:897 jl_toplevel_eval_flex at /source/src/toplevel.c:1032 jl_toplevel_eval_flex at /source/src/toplevel.c:972 ijl_toplevel_eval at /source/src/toplevel.c:1044 ijl_toplevel_eval_in at /source/src/toplevel.c:1089 eval at ./boot.jl:488 include_string at ./loading.jl:2855 include_string at ./loading.jl:2865 [inlined] exec_options at ./client.jl:326 _start at ./client.jl:560 jfptr__start_63340.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 jl_apply at /source/src/julia.h:2359 [inlined] true_main at /source/src/jlapi.c:964 jl_repl_entrypoint at /source/src/jlapi.c:1124 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x756c6f322249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S Allocations: 5987561 (Pool: 5987497; Big: 64); GC: 6 ERROR: LoadError: Failed to precompile VectorizationBase [3d5dd08c-fd9d-11e8-17fa-ed2836048c2f] to "/home/pkgeval/.julia/compiled/v1.13/VectorizationBase/jl_fi5ne5" (ProcessSignaled(6)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3291 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2682 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1280 [8] #invokelatest_gr#227 @ ./reflection.jl:1288 [inlined] [9] invokelatest_gr @ ./reflection.jl:1282 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3862 [11] maybe_cachefile_lock @ ./loading.jl:3859 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2668 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2493 [14] macro expansion @ ./loading.jl:2421 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2386 [17] #invoke_in_world#2 @ ./essentials.jl:1092 [inlined] [18] invoke_in_world @ ./essentials.jl:1088 [inlined] [19] require(into::Module, mod::Symbol) @ Base ./loading.jl:2366 [20] top-level scope @ ~/.julia/packages/LoopVectorization/XbdFG/src/LoopVectorization.jl:10 [21] include(mod::Module, _path::String) @ Base ./Base.jl:307 [22] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3004 [23] top-level scope @ stdin:6 [24] eval(m::Module, e::Any) @ Core ./boot.jl:488 [25] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2855 [26] include_string @ ./loading.jl:2865 [inlined] [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [28] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/LoopVectorization/XbdFG/src/LoopVectorization.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile LoopVectorization [bdcacae8-1622-11e9-2a5c-532679323890] to "/home/pkgeval/.julia/compiled/v1.13/LoopVectorization/jl_JqUq9I" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3291 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2682 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1280 [8] #invokelatest_gr#227 @ ./reflection.jl:1288 [inlined] [9] invokelatest_gr @ ./reflection.jl:1282 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3862 [11] maybe_cachefile_lock @ ./loading.jl:3859 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2668 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2493 [14] macro expansion @ ./loading.jl:2421 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2386 [17] #invoke_in_world#2 @ ./essentials.jl:1092 [inlined] [18] invoke_in_world @ ./essentials.jl:1088 [inlined] [19] require(into::Module, mod::Symbol) @ Base ./loading.jl:2366 [20] top-level scope @ ~/.julia/packages/OrdinaryDiffEq/P7HJO/src/OrdinaryDiffEq.jl:16 [21] include(mod::Module, _path::String) @ Base ./Base.jl:307 [22] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3004 [23] top-level scope @ stdin:6 [24] eval(m::Module, e::Any) @ Core ./boot.jl:488 [25] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2855 [26] include_string @ ./loading.jl:2865 [inlined] [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [28] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/OrdinaryDiffEq/P7HJO/src/OrdinaryDiffEq.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile OrdinaryDiffEq [1dea7af3-3e70-54e6-95c3-0bf5283fa5ed] to "/home/pkgeval/.julia/compiled/v1.13/OrdinaryDiffEq/jl_SW04ko" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3291 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2682 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1280 [8] #invokelatest_gr#227 @ ./reflection.jl:1288 [inlined] [9] invokelatest_gr @ ./reflection.jl:1282 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3862 [11] maybe_cachefile_lock @ ./loading.jl:3859 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2668 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2493 [14] macro expansion @ ./loading.jl:2421 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2386 [17] #invoke_in_world#2 @ ./essentials.jl:1092 [inlined] [18] invoke_in_world @ ./essentials.jl:1088 [inlined] [19] require(into::Module, mod::Symbol) @ Base ./loading.jl:2366 [20] top-level scope @ ~/.julia/packages/StochasticDiffEq/0PuS7/src/StochasticDiffEq.jl:12 [21] include(mod::Module, _path::String) @ Base ./Base.jl:307 [22] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3004 [23] top-level scope @ stdin:6 [24] eval(m::Module, e::Any) @ Core ./boot.jl:488 [25] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2855 [26] include_string @ ./loading.jl:2865 [inlined] [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [28] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/StochasticDiffEq/0PuS7/src/StochasticDiffEq.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile StochasticDiffEq [789caeaf-c7a9-5a7d-9973-96adeb23e2a0] to "/home/pkgeval/.julia/compiled/v1.13/StochasticDiffEq/jl_pAlsVB" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3291 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2682 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1280 [8] #invokelatest_gr#227 @ ./reflection.jl:1288 [inlined] [9] invokelatest_gr @ ./reflection.jl:1282 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3862 [11] maybe_cachefile_lock @ ./loading.jl:3859 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2668 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2493 [14] macro expansion @ ./loading.jl:2421 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2386 [17] #invoke_in_world#2 @ ./essentials.jl:1092 [inlined] [18] invoke_in_world @ ./essentials.jl:1088 [inlined] [19] require(into::Module, mod::Symbol) @ Base ./loading.jl:2366 [20] include(mod::Module, _path::String) @ Base ./Base.jl:307 [21] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3004 [22] top-level scope @ stdin:6 [23] eval(m::Module, e::Any) @ Core ./boot.jl:488 [24] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2855 [25] include_string @ ./loading.jl:2865 [inlined] [26] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [27] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/DifferentialEquations/yS3VA/src/DifferentialEquations.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile DifferentialEquations [0c46a032-eb83-5123-abaf-570d42b7fbaa] to "/home/pkgeval/.julia/compiled/v1.13/DifferentialEquations/jl_1yEEjU" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3291 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2682 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1280 [8] #invokelatest_gr#227 @ ./reflection.jl:1288 [inlined] [9] invokelatest_gr @ ./reflection.jl:1282 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3862 [11] maybe_cachefile_lock @ ./loading.jl:3859 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2668 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2493 [14] macro expansion @ ./loading.jl:2421 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2386 [17] #invoke_in_world#2 @ ./essentials.jl:1092 [inlined] [18] invoke_in_world @ ./essentials.jl:1088 [inlined] [19] require(into::Module, mod::Symbol) @ Base ./loading.jl:2366 [20] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:308 [21] top-level scope @ ~/.julia/packages/ReactionNetworkEvolution/GQEYD/src/evo_utils.jl:4 [22] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:308 [23] top-level scope @ ~/.julia/packages/ReactionNetworkEvolution/GQEYD/src/ReactionNetworkEvolution.jl:7 [24] include(mod::Module, _path::String) @ Base ./Base.jl:307 [25] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3004 [26] top-level scope @ stdin:6 [27] eval(m::Module, e::Any) @ Core ./boot.jl:488 [28] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2855 [29] include_string @ ./loading.jl:2865 [inlined] [30] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [31] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/ReactionNetworkEvolution/GQEYD/src/ode_solver.jl:1 in expression starting at /home/pkgeval/.julia/packages/ReactionNetworkEvolution/GQEYD/src/evo_utils.jl:4 in expression starting at /home/pkgeval/.julia/packages/ReactionNetworkEvolution/GQEYD/src/ReactionNetworkEvolution.jl:1 in expression starting at stdin: in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 1192.5s ################################################################################ # Loading # Loading ReactionNetworkEvolution... Precompiling packages... 44316.2 ms ✓ ExponentialUtilities ✗ VectorizationBase 14644.6 ms ✓ SparseDiffTools ✗ SLEEFPirates ✗ LoopVectorization ✗ LoopVectorization → SpecialFunctionsExt ✗ LoopVectorization → ForwardDiffExt ✗ TriangularSolve ✗ RecursiveFactorization ✗ LinearSolve ✗ OrdinaryDiffEq ✗ DelayDiffEq ✗ StochasticDiffEq ✗ DifferentialEquations Info Given ReactionNetworkEvolution was explicitly requested, output will be shown live  julia: /source/src/method.c:428: jl_new_code_info_from_ir: Assertion `(((jl_array_t*)(((jl_expr_t*)(ma))->args))->dimsize[0]) == 0' failed.  [750] signal 6 (-6): Aborted in expression starting at none:1 unknown function (ip: 0x7a9355582ebc) at /lib/x86_64-linux-gnu/libc.so.6 gsignal at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) abort at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x7a935551e394) at /lib/x86_64-linux-gnu/libc.so.6 __assert_fail at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) jl_new_code_info_from_ir at /source/src/method.c:428 scm_to_julia_ at /source/src/ast.c:650 scm_to_julia_ at /source/src/ast.c:646 scm_to_julia_ at /source/src/ast.c:646 scm_to_julia_ at /source/src/ast.c:646 scm_to_julia_ at /source/src/ast.c:646 scm_to_julia at /source/src/ast.c:472 ijl_expand_with_loc_warn at /source/src/ast.c:1320 jl_toplevel_eval_flex at /source/src/toplevel.c:820 ijl_toplevel_eval at /source/src/toplevel.c:1044 ijl_toplevel_eval_in at /source/src/toplevel.c:1089 eval at ./boot.jl:488 jfptr_eval_63460.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 jl_apply at /source/src/julia.h:2359 [inlined] do_call at /source/src/interpreter.c:124 eval_value at /source/src/interpreter.c:242 eval_stmt_value at /source/src/interpreter.c:193 [inlined] eval_body at /source/src/interpreter.c:692 jl_interpret_toplevel_thunk at /source/src/interpreter.c:897 jl_toplevel_eval_flex at /source/src/toplevel.c:1032 jl_toplevel_eval_flex at /source/src/toplevel.c:972 ijl_toplevel_eval at /source/src/toplevel.c:1044 ijl_toplevel_eval_in at /source/src/toplevel.c:1089 eval at ./boot.jl:488 include_string at ./loading.jl:2855 _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 _include at ./loading.jl:2915 include at ./Base.jl:308 IncludeInto at ./Base.jl:309 jfptr_IncludeInto_115428.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 jl_apply at /source/src/julia.h:2359 [inlined] do_call at /source/src/interpreter.c:124 eval_value at /source/src/interpreter.c:242 eval_stmt_value at /source/src/interpreter.c:193 [inlined] eval_body at /source/src/interpreter.c:692 jl_interpret_toplevel_thunk at /source/src/interpreter.c:897 jl_toplevel_eval_flex at /source/src/toplevel.c:1032 jl_eval_module_expr at /source/src/toplevel.c:210 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:826 jl_toplevel_eval_flex at /source/src/toplevel.c:972 ijl_toplevel_eval at /source/src/toplevel.c:1044 ijl_toplevel_eval_in at /source/src/toplevel.c:1089 eval at ./boot.jl:488 include_string at ./loading.jl:2855 _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 _include at ./loading.jl:2915 include at ./Base.jl:307 include_package_for_output at ./loading.jl:3004 jfptr_include_package_for_output_65243.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 jl_apply at /source/src/julia.h:2359 [inlined] do_call at /source/src/interpreter.c:124 eval_value at /source/src/interpreter.c:242 eval_stmt_value at /source/src/interpreter.c:193 [inlined] eval_body at /source/src/interpreter.c:692 jl_interpret_toplevel_thunk at /source/src/interpreter.c:897 jl_toplevel_eval_flex at /source/src/toplevel.c:1032 jl_toplevel_eval_flex at /source/src/toplevel.c:972 ijl_toplevel_eval at /source/src/toplevel.c:1044 ijl_toplevel_eval_in at /source/src/toplevel.c:1089 eval at ./boot.jl:488 include_string at ./loading.jl:2855 include_string at ./loading.jl:2865 [inlined] exec_options at ./client.jl:326 _start at ./client.jl:560 jfptr__start_63340.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 jl_apply at /source/src/julia.h:2359 [inlined] true_main at /source/src/jlapi.c:964 jl_repl_entrypoint at /source/src/jlapi.c:1124 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7a935551f249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S Allocations: 5480992 (Pool: 5480921; Big: 71); GC: 6 ERROR: LoadError: Failed to precompile VectorizationBase [3d5dd08c-fd9d-11e8-17fa-ed2836048c2f] to "/home/pkgeval/.julia/compiled/v1.13/VectorizationBase/jl_swFY1n" (ProcessSignaled(6)). Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)  @ Base ./loading.jl:3291  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()  @ Base ./loading.jl:2682  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93  [5] #mkpidlock#7  @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined]  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114  [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any})  @ Base ./reflection.jl:1280  [8] #invokelatest_gr#227  @ ./reflection.jl:1288 [inlined]  [9] invokelatest_gr  @ ./reflection.jl:1282 [inlined]  [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)  @ Base ./loading.jl:3862  [11] maybe_cachefile_lock  @ ./loading.jl:3859 [inlined]  [12] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2668  [13] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2493  [14] macro expansion  @ ./loading.jl:2421 [inlined]  [15] macro expansion  @ ./lock.jl:376 [inlined]  [16] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2386  [17] #invoke_in_world#2  @ ./essentials.jl:1092 [inlined]  [18] invoke_in_world  @ ./essentials.jl:1088 [inlined]  [19] require(into::Module, mod::Symbol)  @ Base ./loading.jl:2366  [20] top-level scope  @ ~/.julia/packages/LoopVectorization/XbdFG/src/LoopVectorization.jl:10  [21] include(mod::Module, _path::String)  @ Base ./Base.jl:307  [22] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)  @ Base ./loading.jl:3004  [23] top-level scope  @ stdin:6  [24] eval(m::Module, e::Any)  @ Core ./boot.jl:488  [25] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2855  [26] include_string  @ ./loading.jl:2865 [inlined]  [27] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:326  [28] _start()  @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/LoopVectorization/XbdFG/src/LoopVectorization.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile LoopVectorization [bdcacae8-1622-11e9-2a5c-532679323890] to "/home/pkgeval/.julia/compiled/v1.13/LoopVectorization/jl_ZGbFJp" (ProcessExited(1)). Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)  @ Base ./loading.jl:3291  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()  @ Base ./loading.jl:2682  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93  [5] #mkpidlock#7  @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined]  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114  [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any})  @ Base ./reflection.jl:1280  [8] #invokelatest_gr#227  @ ./reflection.jl:1288 [inlined]  [9] invokelatest_gr  @ ./reflection.jl:1282 [inlined]  [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)  @ Base ./loading.jl:3862  [11] maybe_cachefile_lock  @ ./loading.jl:3859 [inlined]  [12] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2668  [13] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2493  [14] macro expansion  @ ./loading.jl:2421 [inlined]  [15] macro expansion  @ ./lock.jl:376 [inlined]  [16] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2386  [17] #invoke_in_world#2  @ ./essentials.jl:1092 [inlined]  [18] invoke_in_world  @ ./essentials.jl:1088 [inlined]  [19] require(into::Module, mod::Symbol)  @ Base ./loading.jl:2366  [20] top-level scope  @ ~/.julia/packages/OrdinaryDiffEq/P7HJO/src/OrdinaryDiffEq.jl:16  [21] include(mod::Module, _path::String)  @ Base ./Base.jl:307  [22] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)  @ Base ./loading.jl:3004  [23] top-level scope  @ stdin:6  [24] eval(m::Module, e::Any)  @ Core ./boot.jl:488  [25] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2855  [26] include_string  @ ./loading.jl:2865 [inlined]  [27] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:326  [28] _start()  @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/OrdinaryDiffEq/P7HJO/src/OrdinaryDiffEq.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile OrdinaryDiffEq [1dea7af3-3e70-54e6-95c3-0bf5283fa5ed] to "/home/pkgeval/.julia/compiled/v1.13/OrdinaryDiffEq/jl_2phVvP" (ProcessExited(1)). Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)  @ Base ./loading.jl:3291  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()  @ Base ./loading.jl:2682  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93  [5] #mkpidlock#7  @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined]  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114  [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any})  @ Base ./reflection.jl:1280  [8] #invokelatest_gr#227  @ ./reflection.jl:1288 [inlined]  [9] invokelatest_gr  @ ./reflection.jl:1282 [inlined]  [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)  @ Base ./loading.jl:3862  [11] maybe_cachefile_lock  @ ./loading.jl:3859 [inlined]  [12] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2668  [13] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2493  [14] macro expansion  @ ./loading.jl:2421 [inlined]  [15] macro expansion  @ ./lock.jl:376 [inlined]  [16] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2386  [17] #invoke_in_world#2  @ ./essentials.jl:1092 [inlined]  [18] invoke_in_world  @ ./essentials.jl:1088 [inlined]  [19] require(into::Module, mod::Symbol)  @ Base ./loading.jl:2366  [20] top-level scope  @ ~/.julia/packages/StochasticDiffEq/0PuS7/src/StochasticDiffEq.jl:12  [21] include(mod::Module, _path::String)  @ Base ./Base.jl:307  [22] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)  @ Base ./loading.jl:3004  [23] top-level scope  @ stdin:6  [24] eval(m::Module, e::Any)  @ Core ./boot.jl:488  [25] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2855  [26] include_string  @ ./loading.jl:2865 [inlined]  [27] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:326  [28] _start()  @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/StochasticDiffEq/0PuS7/src/StochasticDiffEq.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile StochasticDiffEq [789caeaf-c7a9-5a7d-9973-96adeb23e2a0] to "/home/pkgeval/.julia/compiled/v1.13/StochasticDiffEq/jl_lBJWnB" (ProcessExited(1)). Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)  @ Base ./loading.jl:3291  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()  @ Base ./loading.jl:2682  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93  [5] #mkpidlock#7  @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined]  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114  [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any})  @ Base ./reflection.jl:1280  [8] #invokelatest_gr#227  @ ./reflection.jl:1288 [inlined]  [9] invokelatest_gr  @ ./reflection.jl:1282 [inlined]  [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)  @ Base ./loading.jl:3862  [11] maybe_cachefile_lock  @ ./loading.jl:3859 [inlined]  [12] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2668  [13] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2493  [14] macro expansion  @ ./loading.jl:2421 [inlined]  [15] macro expansion  @ ./lock.jl:376 [inlined]  [16] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2386  [17] #invoke_in_world#2  @ ./essentials.jl:1092 [inlined]  [18] invoke_in_world  @ ./essentials.jl:1088 [inlined]  [19] require(into::Module, mod::Symbol)  @ Base ./loading.jl:2366  [20] include(mod::Module, _path::String)  @ Base ./Base.jl:307  [21] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)  @ Base ./loading.jl:3004  [22] top-level scope  @ stdin:6  [23] eval(m::Module, e::Any)  @ Core ./boot.jl:488  [24] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2855  [25] include_string  @ ./loading.jl:2865 [inlined]  [26] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:326  [27] _start()  @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/DifferentialEquations/yS3VA/src/DifferentialEquations.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile DifferentialEquations [0c46a032-eb83-5123-abaf-570d42b7fbaa] to "/home/pkgeval/.julia/compiled/v1.13/DifferentialEquations/jl_BQ5MMX" (ProcessExited(1)). Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)  @ Base ./loading.jl:3291  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()  @ Base ./loading.jl:2682  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93  [5] #mkpidlock#7  @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined]  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114  [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any})  @ Base ./reflection.jl:1280  [8] #invokelatest_gr#227  @ ./reflection.jl:1288 [inlined]  [9] invokelatest_gr  @ ./reflection.jl:1282 [inlined]  [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)  @ Base ./loading.jl:3862  [11] maybe_cachefile_lock  @ ./loading.jl:3859 [inlined]  [12] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2668  [13] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2493  [14] macro expansion  @ ./loading.jl:2421 [inlined]  [15] macro expansion  @ ./lock.jl:376 [inlined]  [16] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2386  [17] #invoke_in_world#2  @ ./essentials.jl:1092 [inlined]  [18] invoke_in_world  @ ./essentials.jl:1088 [inlined]  [19] require(into::Module, mod::Symbol)  @ Base ./loading.jl:2366  [20] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:308  [21] top-level scope  @ ~/.julia/packages/ReactionNetworkEvolution/GQEYD/src/evo_utils.jl:4  [22] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:308  [23] top-level scope  @ ~/.julia/packages/ReactionNetworkEvolution/GQEYD/src/ReactionNetworkEvolution.jl:7  [24] include(mod::Module, _path::String)  @ Base ./Base.jl:307  [25] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3004  [26] top-level scope  @ stdin:6  [27] eval(m::Module, e::Any)  @ Core ./boot.jl:488  [28] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2855  [29] include_string  @ ./loading.jl:2865 [inlined]  [30] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:326  [31] _start()  @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/ReactionNetworkEvolution/GQEYD/src/ode_solver.jl:1 in expression starting at /home/pkgeval/.julia/packages/ReactionNetworkEvolution/GQEYD/src/evo_utils.jl:4 in expression starting at /home/pkgeval/.julia/packages/ReactionNetworkEvolution/GQEYD/src/ReactionNetworkEvolution.jl:1 in expression starting at stdin:6 ✗ ReactionNetworkEvolution 2 dependencies successfully precompiled in 418 seconds. 194 already precompiled. ERROR: The following 1 direct dependency failed to precompile: ReactionNetworkEvolution Failed to precompile ReactionNetworkEvolution [61220d1e-4cdb-4fc3-9e6c-02bd7f830b85] to "/home/pkgeval/.julia/compiled/v1.13/ReactionNetworkEvolution/jl_fyrtMO" (ProcessExited(1)). julia: /source/src/method.c:428: jl_new_code_info_from_ir: Assertion `(((jl_array_t*)(((jl_expr_t*)(ma))->args))->dimsize[0]) == 0' failed. [750] signal 6 (-6): Aborted in expression starting at none:1 unknown function (ip: 0x7a9355582ebc) at /lib/x86_64-linux-gnu/libc.so.6 gsignal at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) abort at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x7a935551e394) at /lib/x86_64-linux-gnu/libc.so.6 __assert_fail at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) jl_new_code_info_from_ir at /source/src/method.c:428 scm_to_julia_ at /source/src/ast.c:650 scm_to_julia_ at /source/src/ast.c:646 scm_to_julia_ at /source/src/ast.c:646 scm_to_julia_ at /source/src/ast.c:646 scm_to_julia_ at /source/src/ast.c:646 scm_to_julia at /source/src/ast.c:472 ijl_expand_with_loc_warn at /source/src/ast.c:1320 jl_toplevel_eval_flex at /source/src/toplevel.c:820 ijl_toplevel_eval at /source/src/toplevel.c:1044 ijl_toplevel_eval_in at /source/src/toplevel.c:1089 eval at ./boot.jl:488 jfptr_eval_63460.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 jl_apply at /source/src/julia.h:2359 [inlined] do_call at /source/src/interpreter.c:124 eval_value at /source/src/interpreter.c:242 eval_stmt_value at /source/src/interpreter.c:193 [inlined] eval_body at /source/src/interpreter.c:692 jl_interpret_toplevel_thunk at /source/src/interpreter.c:897 jl_toplevel_eval_flex at /source/src/toplevel.c:1032 jl_toplevel_eval_flex at /source/src/toplevel.c:972 ijl_toplevel_eval at /source/src/toplevel.c:1044 ijl_toplevel_eval_in at /source/src/toplevel.c:1089 eval at ./boot.jl:488 include_string at ./loading.jl:2855 _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 _include at ./loading.jl:2915 include at ./Base.jl:308 IncludeInto at ./Base.jl:309 jfptr_IncludeInto_115428.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 jl_apply at /source/src/julia.h:2359 [inlined] do_call at /source/src/interpreter.c:124 eval_value at /source/src/interpreter.c:242 eval_stmt_value at /source/src/interpreter.c:193 [inlined] eval_body at /source/src/interpreter.c:692 jl_interpret_toplevel_thunk at /source/src/interpreter.c:897 jl_toplevel_eval_flex at /source/src/toplevel.c:1032 jl_eval_module_expr at /source/src/toplevel.c:210 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:826 jl_toplevel_eval_flex at /source/src/toplevel.c:972 ijl_toplevel_eval at /source/src/toplevel.c:1044 ijl_toplevel_eval_in at /source/src/toplevel.c:1089 eval at ./boot.jl:488 include_string at ./loading.jl:2855 _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 _include at ./loading.jl:2915 include at ./Base.jl:307 include_package_for_output at ./loading.jl:3004 jfptr_include_package_for_output_65243.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 jl_apply at /source/src/julia.h:2359 [inlined] do_call at /source/src/interpreter.c:124 eval_value at /source/src/interpreter.c:242 eval_stmt_value at /source/src/interpreter.c:193 [inlined] eval_body at /source/src/interpreter.c:692 jl_interpret_toplevel_thunk at /source/src/interpreter.c:897 jl_toplevel_eval_flex at /source/src/toplevel.c:1032 jl_toplevel_eval_flex at /source/src/toplevel.c:972 ijl_toplevel_eval at /source/src/toplevel.c:1044 ijl_toplevel_eval_in at /source/src/toplevel.c:1089 eval at ./boot.jl:488 include_string at ./loading.jl:2855 include_string at ./loading.jl:2865 [inlined] exec_options at ./client.jl:326 _start at ./client.jl:560 jfptr__start_63340.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3475 [inlined] ijl_apply_generic at /source/src/gf.c:3675 jl_apply at /source/src/julia.h:2359 [inlined] true_main at /source/src/jlapi.c:964 jl_repl_entrypoint at /source/src/jlapi.c:1124 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7a935551f249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S Allocations: 5480992 (Pool: 5480921; Big: 71); GC: 6 ERROR: LoadError: Failed to precompile VectorizationBase [3d5dd08c-fd9d-11e8-17fa-ed2836048c2f] to "/home/pkgeval/.julia/compiled/v1.13/VectorizationBase/jl_swFY1n" (ProcessSignaled(6)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3291 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2682 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1280 [8] #invokelatest_gr#227 @ ./reflection.jl:1288 [inlined] [9] invokelatest_gr @ ./reflection.jl:1282 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3862 [11] maybe_cachefile_lock @ ./loading.jl:3859 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2668 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2493 [14] macro expansion @ ./loading.jl:2421 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2386 [17] #invoke_in_world#2 @ ./essentials.jl:1092 [inlined] [18] invoke_in_world @ ./essentials.jl:1088 [inlined] [19] require(into::Module, mod::Symbol) @ Base ./loading.jl:2366 [20] top-level scope @ ~/.julia/packages/LoopVectorization/XbdFG/src/LoopVectorization.jl:10 [21] include(mod::Module, _path::String) @ Base ./Base.jl:307 [22] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3004 [23] top-level scope @ stdin:6 [24] eval(m::Module, e::Any) @ Core ./boot.jl:488 [25] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2855 [26] include_string @ ./loading.jl:2865 [inlined] [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [28] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/LoopVectorization/XbdFG/src/LoopVectorization.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile LoopVectorization [bdcacae8-1622-11e9-2a5c-532679323890] to "/home/pkgeval/.julia/compiled/v1.13/LoopVectorization/jl_ZGbFJp" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3291 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2682 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1280 [8] #invokelatest_gr#227 @ ./reflection.jl:1288 [inlined] [9] invokelatest_gr @ ./reflection.jl:1282 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3862 [11] maybe_cachefile_lock @ ./loading.jl:3859 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2668 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2493 [14] macro expansion @ ./loading.jl:2421 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2386 [17] #invoke_in_world#2 @ ./essentials.jl:1092 [inlined] [18] invoke_in_world @ ./essentials.jl:1088 [inlined] [19] require(into::Module, mod::Symbol) @ Base ./loading.jl:2366 [20] top-level scope @ ~/.julia/packages/OrdinaryDiffEq/P7HJO/src/OrdinaryDiffEq.jl:16 [21] include(mod::Module, _path::String) @ Base ./Base.jl:307 [22] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3004 [23] top-level scope @ stdin:6 [24] eval(m::Module, e::Any) @ Core ./boot.jl:488 [25] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2855 [26] include_string @ ./loading.jl:2865 [inlined] [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [28] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/OrdinaryDiffEq/P7HJO/src/OrdinaryDiffEq.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile OrdinaryDiffEq [1dea7af3-3e70-54e6-95c3-0bf5283fa5ed] to "/home/pkgeval/.julia/compiled/v1.13/OrdinaryDiffEq/jl_2phVvP" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3291 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2682 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1280 [8] #invokelatest_gr#227 @ ./reflection.jl:1288 [inlined] [9] invokelatest_gr @ ./reflection.jl:1282 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3862 [11] maybe_cachefile_lock @ ./loading.jl:3859 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2668 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2493 [14] macro expansion @ ./loading.jl:2421 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2386 [17] #invoke_in_world#2 @ ./essentials.jl:1092 [inlined] [18] invoke_in_world @ ./essentials.jl:1088 [inlined] [19] require(into::Module, mod::Symbol) @ Base ./loading.jl:2366 [20] top-level scope @ ~/.julia/packages/StochasticDiffEq/0PuS7/src/StochasticDiffEq.jl:12 [21] include(mod::Module, _path::String) @ Base ./Base.jl:307 [22] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3004 [23] top-level scope @ stdin:6 [24] eval(m::Module, e::Any) @ Core ./boot.jl:488 [25] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2855 [26] include_string @ ./loading.jl:2865 [inlined] [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [28] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/StochasticDiffEq/0PuS7/src/StochasticDiffEq.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile StochasticDiffEq [789caeaf-c7a9-5a7d-9973-96adeb23e2a0] to "/home/pkgeval/.julia/compiled/v1.13/StochasticDiffEq/jl_lBJWnB" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3291 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2682 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1280 [8] #invokelatest_gr#227 @ ./reflection.jl:1288 [inlined] [9] invokelatest_gr @ ./reflection.jl:1282 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3862 [11] maybe_cachefile_lock @ ./loading.jl:3859 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2668 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2493 [14] macro expansion @ ./loading.jl:2421 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2386 [17] #invoke_in_world#2 @ ./essentials.jl:1092 [inlined] [18] invoke_in_world @ ./essentials.jl:1088 [inlined] [19] require(into::Module, mod::Symbol) @ Base ./loading.jl:2366 [20] include(mod::Module, _path::String) @ Base ./Base.jl:307 [21] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3004 [22] top-level scope @ stdin:6 [23] eval(m::Module, e::Any) @ Core ./boot.jl:488 [24] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2855 [25] include_string @ ./loading.jl:2865 [inlined] [26] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [27] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/DifferentialEquations/yS3VA/src/DifferentialEquations.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile DifferentialEquations [0c46a032-eb83-5123-abaf-570d42b7fbaa] to "/home/pkgeval/.julia/compiled/v1.13/DifferentialEquations/jl_BQ5MMX" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3291 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2682 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1280 [8] #invokelatest_gr#227 @ ./reflection.jl:1288 [inlined] [9] invokelatest_gr @ ./reflection.jl:1282 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3862 [11] maybe_cachefile_lock @ ./loading.jl:3859 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2668 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2493 [14] macro expansion @ ./loading.jl:2421 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2386 [17] #invoke_in_world#2 @ ./essentials.jl:1092 [inlined] [18] invoke_in_world @ ./essentials.jl:1088 [inlined] [19] require(into::Module, mod::Symbol) @ Base ./loading.jl:2366 [20] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:308 [21] top-level scope @ ~/.julia/packages/ReactionNetworkEvolution/GQEYD/src/evo_utils.jl:4 [22] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:308 [23] top-level scope @ ~/.julia/packages/ReactionNetworkEvolution/GQEYD/src/ReactionNetworkEvolution.jl:7 [24] include(mod::Module, _path::String) @ Base ./Base.jl:307 [25] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3004 [26] top-level scope @ stdin:6 [27] eval(m::Module, e::Any) @ Core ./boot.jl:488 [28] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2855 [29] include_string @ ./loading.jl:2865 [inlined] [30] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [31] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/ReactionNetworkEvolution/GQEYD/src/ode_solver.jl:1 in expression starting at /home/pkgeval/.julia/packages/ReactionNetworkEvolution/GQEYD/src/evo_utils.jl:4 in expression starting at /home/pkgeval/.julia/packages/ReactionNetworkEvolution/GQEYD/src/ReactionNetworkEvolution.jl:1 in expression starting at stdin: Loading failed after 412.13s ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so -g1 --check-bounds=yes --inline=yes --pkgimages=existing -e 'using ReactionNetworkEvolution'`, ProcessExited(1)) [1] Stacktrace: [1] pipeline_error @ ./process.jl:598 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:513 [3] run(::Cmd) @ Base ./process.jl:510 [4] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:193 [5] include(mod::Module, _path::String) @ Base ./Base.jl:307 [6] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [7] _start() @ Base ./client.jl:560 in expression starting at /PkgEval.jl/scripts/evaluate.jl:184 PkgEval failed after 1650.18s: package fails to precompile