Package evaluation of LiteQTL on Julia 1.13.0-DEV.111 (ce76dbf07d*) started at 2025-02-28T03:59:11.369


################################################################################
# Set-up
#


Set-up completed after 0.26s


################################################################################
# Installation
#

Installing LiteQTL...
   Resolving package versions...
    Updating `~/.julia/environments/v1.13/Project.toml`
  [85e3bc59] + LiteQTL v0.2.4
    Updating `~/.julia/environments/v1.13/Manifest.toml`
Precompiling packages...
   8172.7 ms  ✓ CUDA_Driver_jll
  1 dependency successfully precompiled in 8 seconds. 28 already precompiled.
  [621f4979] + AbstractFFTs v1.5.0
⌅ [79e6a3ab] + Adapt v3.7.2
  [66dad0bd] + AliasTables v1.1.3
  [a9b6321e] + Atomix v1.1.1
⌅ [ab4f0b2a] + BFloat16s v0.4.2
⌅ [fa961155] + CEnum v0.4.2
  [336ed68f] + CSV v0.10.15
⌅ [052768ef] + CUDA v5.0.0
⌅ [1af6417a] + CUDA_Runtime_Discovery v0.2.4
  [944b1d66] + CodecZlib v0.7.8
  [3da002f7] + ColorTypes v0.12.0
  [5ae59095] + Colors v0.13.0
  [34da2185] + Compat v4.16.0
  [a8cc5b0e] + Crayons v4.1.1
  [9a962f9c] + DataAPI v1.16.0
  [a93c6f00] + DataFrames v1.7.0
  [864edb3b] + DataStructures v0.18.20
  [e2d170a0] + DataValueInterfaces v1.0.0
  [8bb1440f] + DelimitedFiles v1.9.1
  [31c24e10] + Distributions v0.25.117
  [ffbed154] + DocStringExtensions v0.9.3
  [e2ba6199] + ExprTools v0.1.10
  [48062228] + FilePathsBase v0.9.23
  [1a297f60] + FillArrays v1.13.0
  [53c48c17] + FixedPointNumbers v0.8.5
⌅ [0c68f7d7] + GPUArrays v9.1.0
⌅ [46192b85] + GPUArraysCore v0.1.5
⌅ [61eb1bfa] + GPUCompiler v0.24.5
  [34004b35] + HypergeometricFunctions v0.3.27
  [842dd82b] + InlineStrings v1.4.3
  [41ab1584] + InvertedIndices v1.3.1
  [92d709cd] + IrrationalConstants v0.2.4
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [692b3bcd] + JLLWrappers v1.7.0
  [63c18a36] + KernelAbstractions v0.9.34
⌅ [929cbde3] + LLVM v6.6.3
  [b964fa9f] + LaTeXStrings v1.4.0
  [85e3bc59] + LiteQTL v0.2.4
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [1914dd2f] + MacroTools v0.5.15
  [e1d29d7a] + Missings v1.2.0
⌅ [5da4648a] + NVTX v0.3.5
  [bac558e1] + OrderedCollections v1.8.0
  [90014a1f] + PDMats v0.11.32
  [69de0a69] + Parsers v2.8.1
  [2dfb63ee] + PooledArrays v1.4.3
  [aea7be01] + PrecompileTools v1.2.1
  [21216c6a] + Preferences v1.4.3
  [08abe8d2] + PrettyTables v2.4.0
  [43287f4e] + PtrArrays v1.3.0
  [1fd47b50] + QuadGK v2.11.2
  [74087812] + Random123 v1.7.0
  [e6cf234a] + RandomNumbers v1.6.0
  [189a3867] + Reexport v1.2.2
  [ae029012] + Requires v1.3.1
  [79098fc4] + Rmath v0.8.0
  [6c6a2e73] + Scratch v1.2.1
  [91c51154] + SentinelArrays v1.4.8
  [a2af1166] + SortingAlgorithms v1.2.1
  [276daf66] + SpecialFunctions v2.5.0
  [90137ffa] + StaticArrays v1.9.12
  [1e83bf80] + StaticArraysCore v1.4.3
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.7.0
  [2913bbd2] + StatsBase v0.34.4
  [4c63d2b9] + StatsFuns v1.3.2
  [892a3eda] + StringManipulation v0.4.1
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.0
  [a759f4b9] + TimerOutputs v0.5.27
  [3bb67fe8] + TranscodingStreams v0.11.3
⌅ [013be700] + UnsafeAtomics v0.2.1
⌅ [d80eeb9a] + UnsafeAtomicsLLVM v0.1.5
  [ea10d353] + WeakRefStrings v1.4.2
  [76eceee3] + WorkerUtilities v1.6.1
⌅ [4ee394cb] + CUDA_Driver_jll v0.6.0+4
⌅ [76a88914] + CUDA_Runtime_jll v0.9.2+4
  [9c1d0b0a] + JuliaNVTXCallbacks_jll v0.2.1+0
⌅ [dad2f222] + LLVMExtra_jll v0.0.29+0
  [e98f9f5b] + NVTX_jll v3.1.1+0
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [f50d1b31] + Rmath_jll v0.5.1+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [f43a241f] + Downloads v1.7.0
  [7b1f6079] + FileWatching v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [4af54fe1] + LazyArtifacts v1.11.0
  [b27032c2] + LibCURL v0.6.4
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.12.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [44cfe95a] + Pkg v1.12.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [2f01184e] + SparseArrays v1.12.0
  [f489334b] + StyledStrings v1.11.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] + LibCURL_jll v8.11.1+1
  [e37daf67] + LibGit2_jll v1.9.0+0
  [29816b5a] + LibSSH2_jll v1.11.3+1
  [14a3606d] + MozillaCACerts_jll v2024.12.31
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [05823500] + OpenLibm_jll v0.8.5+0
  [458c3c95] + OpenSSL_jll v3.0.16+0
  [bea87d4a] + SuiteSparse_jll v7.8.3+2
  [83775a58] + Zlib_jll v1.3.1+2
  [8e850b90] + libblastrampoline_jll v5.12.0+0
  [8e850ede] + nghttp2_jll v1.64.0+1
  [3f19e933] + p7zip_jll v17.5.0+2
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 21.29s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...
No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml`
No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml`

Precompiling package dependencies...
Precompiling packages...
   6241.3 ms  ✓ CUDA_Driver_jll
  1 dependency successfully precompiled in 7 seconds. 28 already precompiled.
Precompiling packages...
   6672.2 ms  ✓ CUDA_Runtime_jll
  10756.3 ms  ✓ UnsafeAtomicsLLVM
   7360.2 ms  ✓ LLVM → BFloat16sExt
  11245.0 ms  ? GPUCompiler
  10440.4 ms  ✓ GPUArrays
  11842.0 ms  ? CUDA
  12291.6 ms  ? CUDA → SpecialFunctionsExt
  12901.0 ms  ? Atomix → AtomixCUDAExt
  15257.0 ms  ? LiteQTL
  4 dependencies successfully precompiled in 104 seconds. 127 already precompiled.
  5 dependencies failed but may be precompilable after restarting julia
  8 dependencies had output during precompilation:
┌ Atomix → AtomixCUDAExt
│  ┌ Error: LLVM extensions library unavailable for your platform:
│  │   x86_64-linux-gnu-libgfortran5-cxx11-libstdcxx30-llvm_version+18.asserts-julia_version+1.13.0
│  │ LLVM.jl will not be functional.
│  │ 
│  │ If you are using a custom version of LLVM, try building a
│  │ custom version of LLVMExtra_jll using `deps/build_local.jl`
│  └ @ LLVM ~/.julia/packages/LLVM/bzSzE/src/LLVM.jl:103
│  WARNING: Constructor for type "MethodError" was extended in `GPUCompiler` without explicit qualification or import.
│    NOTE: Assumed "MethodError" refers to `Base.MethodError`. This behavior is deprecated and may differ in future versions.`
│    NOTE: This behavior may have differed in Julia versions prior to 1.12.
│    Hint: If you intended to create a new generic function of the same name, use `function MethodError end`.
│    Hint: To silence the warning, qualify `MethodError` as `Base.MethodError` or explicitly `import Base: MethodError`
│  WARNING: Method definition (::Type{MethodError})(Any, Any) in module Core at boot.jl:446 overwritten in module GPUCompiler at /home/pkgeval/.julia/packages/GPUCompiler/2mJjc/src/jlgen.jl:35.
│  ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation.
└  
┌ CUDA
│  ┌ Error: LLVM extensions library unavailable for your platform:
│  │   x86_64-linux-gnu-libgfortran5-cxx11-libstdcxx30-llvm_version+18.asserts-julia_version+1.13.0
│  │ LLVM.jl will not be functional.
│  │ 
│  │ If you are using a custom version of LLVM, try building a
│  │ custom version of LLVMExtra_jll using `deps/build_local.jl`
│  └ @ LLVM ~/.julia/packages/LLVM/bzSzE/src/LLVM.jl:103
│  WARNING: Constructor for type "MethodError" was extended in `GPUCompiler` without explicit qualification or import.
│    NOTE: Assumed "MethodError" refers to `Base.MethodError`. This behavior is deprecated and may differ in future versions.`
│    NOTE: This behavior may have differed in Julia versions prior to 1.12.
│    Hint: If you intended to create a new generic function of the same name, use `function MethodError end`.
│    Hint: To silence the warning, qualify `MethodError` as `Base.MethodError` or explicitly `import Base: MethodError`
│  WARNING: Method definition (::Type{MethodError})(Any, Any) in module Core at boot.jl:446 overwritten in module GPUCompiler at /home/pkgeval/.julia/packages/GPUCompiler/2mJjc/src/jlgen.jl:35.
│  ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation.
└  
┌ GPUArrays
│  ┌ Error: LLVM extensions library unavailable for your platform:
│  │   x86_64-linux-gnu-libgfortran5-cxx11-libstdcxx30-llvm_version+18.asserts-julia_version+1.13.0
│  │ LLVM.jl will not be functional.
│  │ 
│  │ If you are using a custom version of LLVM, try building a
│  │ custom version of LLVMExtra_jll using `deps/build_local.jl`
│  └ @ LLVM ~/.julia/packages/LLVM/bzSzE/src/LLVM.jl:103
└  
┌ UnsafeAtomicsLLVM
│  ┌ Error: LLVM extensions library unavailable for your platform:
│  │   x86_64-linux-gnu-libgfortran5-cxx11-libstdcxx30-llvm_version+18.asserts-julia_version+1.13.0
│  │ LLVM.jl will not be functional.
│  │ 
│  │ If you are using a custom version of LLVM, try building a
│  │ custom version of LLVMExtra_jll using `deps/build_local.jl`
│  └ @ LLVM ~/.julia/packages/LLVM/bzSzE/src/LLVM.jl:103
└  
┌ LLVM → BFloat16sExt
│  ┌ Error: LLVM extensions library unavailable for your platform:
│  │   x86_64-linux-gnu-libgfortran5-cxx11-libstdcxx30-llvm_version+18.asserts-julia_version+1.13.0
│  │ LLVM.jl will not be functional.
│  │ 
│  │ If you are using a custom version of LLVM, try building a
│  │ custom version of LLVMExtra_jll using `deps/build_local.jl`
│  └ @ LLVM ~/.julia/packages/LLVM/bzSzE/src/LLVM.jl:103
│  WARNING: Constructor for type "ConstantDataArray" was extended in `BFloat16sExt` without explicit qualification or import.
│    NOTE: Assumed "ConstantDataArray" refers to `LLVM.ConstantDataArray`. This behavior is deprecated and may differ in future versions.`
│    NOTE: This behavior may have differed in Julia versions prior to 1.12.
│    Hint: If you intended to create a new generic function of the same name, use `function ConstantDataArray end`.
│    Hint: To silence the warning, qualify `ConstantDataArray` as `LLVM.ConstantDataArray` or explicitly `import LLVM: ConstantDataArray`
└  
┌ GPUCompiler
│  ┌ Error: LLVM extensions library unavailable for your platform:
│  │   x86_64-linux-gnu-libgfortran5-cxx11-libstdcxx30-llvm_version+18.asserts-julia_version+1.13.0
│  │ LLVM.jl will not be functional.
│  │ 
│  │ If you are using a custom version of LLVM, try building a
│  │ custom version of LLVMExtra_jll using `deps/build_local.jl`
│  └ @ LLVM ~/.julia/packages/LLVM/bzSzE/src/LLVM.jl:103
│  WARNING: Constructor for type "MethodError" was extended in `GPUCompiler` without explicit qualification or import.
│    NOTE: Assumed "MethodError" refers to `Base.MethodError`. This behavior is deprecated and may differ in future versions.`
│    NOTE: This behavior may have differed in Julia versions prior to 1.12.
│    Hint: If you intended to create a new generic function of the same name, use `function MethodError end`.
│    Hint: To silence the warning, qualify `MethodError` as `Base.MethodError` or explicitly `import Base: MethodError`
│  WARNING: Method definition (::Type{MethodError})(Any, Any) in module Core at boot.jl:446 overwritten in module GPUCompiler at /home/pkgeval/.julia/packages/GPUCompiler/2mJjc/src/jlgen.jl:35.
│  ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation.
└  
┌ CUDA → SpecialFunctionsExt
│  ┌ Error: LLVM extensions library unavailable for your platform:
│  │   x86_64-linux-gnu-libgfortran5-cxx11-libstdcxx30-llvm_version+18.asserts-julia_version+1.13.0
│  │ LLVM.jl will not be functional.
│  │ 
│  │ If you are using a custom version of LLVM, try building a
│  │ custom version of LLVMExtra_jll using `deps/build_local.jl`
│  └ @ LLVM ~/.julia/packages/LLVM/bzSzE/src/LLVM.jl:103
│  WARNING: Constructor for type "MethodError" was extended in `GPUCompiler` without explicit qualification or import.
│    NOTE: Assumed "MethodError" refers to `Base.MethodError`. This behavior is deprecated and may differ in future versions.`
│    NOTE: This behavior may have differed in Julia versions prior to 1.12.
│    Hint: If you intended to create a new generic function of the same name, use `function MethodError end`.
│    Hint: To silence the warning, qualify `MethodError` as `Base.MethodError` or explicitly `import Base: MethodError`
│  WARNING: Method definition (::Type{MethodError})(Any, Any) in module Core at boot.jl:446 overwritten in module GPUCompiler at /home/pkgeval/.julia/packages/GPUCompiler/2mJjc/src/jlgen.jl:35.
│  ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation.
└  
┌ LiteQTL
│  ┌ Error: LLVM extensions library unavailable for your platform:
│  │   x86_64-linux-gnu-libgfortran5-cxx11-libstdcxx30-llvm_version+18.asserts-julia_version+1.13.0
│  │ LLVM.jl will not be functional.
│  │ 
│  │ If you are using a custom version of LLVM, try building a
│  │ custom version of LLVMExtra_jll using `deps/build_local.jl`
│  └ @ LLVM ~/.julia/packages/LLVM/bzSzE/src/LLVM.jl:103
│  WARNING: Constructor for type "MethodError" was extended in `GPUCompiler` without explicit qualification or import.
│    NOTE: Assumed "MethodError" refers to `Base.MethodError`. This behavior is deprecated and may differ in future versions.`
│    NOTE: This behavior may have differed in Julia versions prior to 1.12.
│    Hint: If you intended to create a new generic function of the same name, use `function MethodError end`.
│    Hint: To silence the warning, qualify `MethodError` as `Base.MethodError` or explicitly `import Base: MethodError`
│  WARNING: Method definition (::Type{MethodError})(Any, Any) in module Core at boot.jl:446 overwritten in module GPUCompiler at /home/pkgeval/.julia/packages/GPUCompiler/2mJjc/src/jlgen.jl:35.
│  ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation.
└  

Precompilation completed after 125.46s


################################################################################
# Loading
#

Loading LiteQTL...
Precompiling packages...
  11788.0 ms  ? GPUCompiler
  12696.4 ms  ? CUDA
  12610.3 ms  ? CUDA → SpecialFunctionsExt
  13027.7 ms  ? Atomix → AtomixCUDAExt
Info Given LiteQTL was explicitly requested, output will be shown live 
┌ Error: LLVM extensions library unavailable for your platform:
│   x86_64-linux-gnu-libgfortran5-cxx11-libstdcxx30-llvm_version+18.asserts-julia_version+1.13.0
│ LLVM.jl will not be functional.
│ 
│ If you are using a custom version of LLVM, try building a
│ custom version of LLVMExtra_jll using `deps/build_local.jl`
└ @ LLVM ~/.julia/packages/LLVM/bzSzE/src/LLVM.jl:103
WARNING: Constructor for type "MethodError" was extended in `GPUCompiler` without explicit qualification or import.
  NOTE: Assumed "MethodError" refers to `Base.MethodError`. This behavior is deprecated and may differ in future versions.`
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function MethodError end`.
  Hint: To silence the warning, qualify `MethodError` as `Base.MethodError` or explicitly `import Base: MethodError`
WARNING: Method definition (::Type{MethodError})(Any, Any) in module Core at boot.jl:446 overwritten in module GPUCompiler at /home/pkgeval/.julia/packages/GPUCompiler/2mJjc/src/jlgen.jl:35.
ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation.
  15796.1 ms  ? LiteQTL
┌ Error: LLVM extensions library unavailable for your platform:
│   x86_64-linux-gnu-libgfortran5-cxx11-libstdcxx30-llvm_version+18.asserts-julia_version+1.13.0
│ LLVM.jl will not be functional.
│ 
│ If you are using a custom version of LLVM, try building a
│ custom version of LLVMExtra_jll using `deps/build_local.jl`
└ @ LLVM ~/.julia/packages/LLVM/bzSzE/src/LLVM.jl:103
WARNING: Constructor for type "MethodError" was extended in `GPUCompiler` without explicit qualification or import.
  NOTE: Assumed "MethodError" refers to `Base.MethodError`. This behavior is deprecated and may differ in future versions.`
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function MethodError end`.
  Hint: To silence the warning, qualify `MethodError` as `Base.MethodError` or explicitly `import Base: MethodError`
WARNING: Method definition (::Type{MethodError})(Any, Any) in module Core at boot.jl:446 overwritten in module GPUCompiler at /home/pkgeval/.julia/packages/GPUCompiler/2mJjc/src/jlgen.jl:35.
ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation.
Precompiling packages...
  15170.8 ms  ? GPUCompiler
Info Given CUDA was explicitly requested, output will be shown live 
┌ Error: LLVM extensions library unavailable for your platform:
│   x86_64-linux-gnu-libgfortran5-cxx11-libstdcxx30-llvm_version+18.asserts-julia_version+1.13.0
│ LLVM.jl will not be functional.
│ 
│ If you are using a custom version of LLVM, try building a
│ custom version of LLVMExtra_jll using `deps/build_local.jl`
└ @ LLVM ~/.julia/packages/LLVM/bzSzE/src/LLVM.jl:103
WARNING: Constructor for type "MethodError" was extended in `GPUCompiler` without explicit qualification or import.
  NOTE: Assumed "MethodError" refers to `Base.MethodError`. This behavior is deprecated and may differ in future versions.`
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function MethodError end`.
  Hint: To silence the warning, qualify `MethodError` as `Base.MethodError` or explicitly `import Base: MethodError`
WARNING: Method definition (::Type{MethodError})(Any, Any) in module Core at boot.jl:446 overwritten in module GPUCompiler at /home/pkgeval/.julia/packages/GPUCompiler/2mJjc/src/jlgen.jl:35.
ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation.
  12696.5 ms  ? CUDA
  13199.2 ms  ? Atomix → AtomixCUDAExt
┌ Error: LLVM extensions library unavailable for your platform:
│   x86_64-linux-gnu-libgfortran5-cxx11-libstdcxx30-llvm_version+18.asserts-julia_version+1.13.0
│ LLVM.jl will not be functional.
│ 
│ If you are using a custom version of LLVM, try building a
│ custom version of LLVMExtra_jll using `deps/build_local.jl`
└ @ LLVM ~/.julia/packages/LLVM/bzSzE/src/LLVM.jl:103
WARNING: Constructor for type "MethodError" was extended in `GPUCompiler` without explicit qualification or import.
  NOTE: Assumed "MethodError" refers to `Base.MethodError`. This behavior is deprecated and may differ in future versions.`
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function MethodError end`.
  Hint: To silence the warning, qualify `MethodError` as `Base.MethodError` or explicitly `import Base: MethodError`
WARNING: Method definition (::Type{MethodError})(Any, Any) in module Core at boot.jl:446 overwritten in module GPUCompiler at /home/pkgeval/.julia/packages/GPUCompiler/2mJjc/src/jlgen.jl:35.
ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation.
Precompiling packages...
Info Given GPUCompiler was explicitly requested, output will be shown live 
┌ Error: LLVM extensions library unavailable for your platform:
│   x86_64-linux-gnu-libgfortran5-cxx11-libstdcxx30-llvm_version+18.asserts-julia_version+1.13.0
│ LLVM.jl will not be functional.
│ 
│ If you are using a custom version of LLVM, try building a
│ custom version of LLVMExtra_jll using `deps/build_local.jl`
└ @ LLVM ~/.julia/packages/LLVM/bzSzE/src/LLVM.jl:103
WARNING: Constructor for type "MethodError" was extended in `GPUCompiler` without explicit qualification or import.
  NOTE: Assumed "MethodError" refers to `Base.MethodError`. This behavior is deprecated and may differ in future versions.`
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function MethodError end`.
  Hint: To silence the warning, qualify `MethodError` as `Base.MethodError` or explicitly `import Base: MethodError`
WARNING: Method definition (::Type{MethodError})(Any, Any) in module Core at boot.jl:446 overwritten in module GPUCompiler at /home/pkgeval/.julia/packages/GPUCompiler/2mJjc/src/jlgen.jl:35.
ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation.
  11122.8 ms  ? GPUCompiler
┌ Error: LLVM extensions library unavailable for your platform:
│   x86_64-linux-gnu-libgfortran5-cxx11-libstdcxx30-llvm_version+18.asserts-julia_version+1.13.0
│ LLVM.jl will not be functional.
│ 
│ If you are using a custom version of LLVM, try building a
│ custom version of LLVMExtra_jll using `deps/build_local.jl`
└ @ LLVM ~/.julia/packages/LLVM/bzSzE/src/LLVM.jl:103
WARNING: Constructor for type "MethodError" was extended in `GPUCompiler` without explicit qualification or import.
  NOTE: Assumed "MethodError" refers to `Base.MethodError`. This behavior is deprecated and may differ in future versions.`
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function MethodError end`.
  Hint: To silence the warning, qualify `MethodError` as `Base.MethodError` or explicitly `import Base: MethodError`
WARNING: Method definition (::Type{MethodError})(Any, Any) in module Core at boot.jl:446 overwritten in module GPUCompiler at /home/pkgeval/.julia/packages/GPUCompiler/2mJjc/src/jlgen.jl:35.
ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation.
┌ Error: LLVM extensions library unavailable for your platform:
│   x86_64-linux-gnu-libgfortran5-cxx11-libstdcxx30-llvm_version+18.asserts-julia_version+1.13.0
│ LLVM.jl will not be functional.
│ 
│ If you are using a custom version of LLVM, try building a
│ custom version of LLVMExtra_jll using `deps/build_local.jl`
└ @ LLVM ~/.julia/packages/LLVM/bzSzE/src/LLVM.jl:103
WARNING: Constructor for type "MethodError" was extended in `GPUCompiler` without explicit qualification or import.
  NOTE: Assumed "MethodError" refers to `Base.MethodError`. This behavior is deprecated and may differ in future versions.`
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function MethodError end`.
  Hint: To silence the warning, qualify `MethodError` as `Base.MethodError` or explicitly `import Base: MethodError`
ERROR: LoadError: UndefVarError: `verbose_stmt_info` not defined in `Compiler`
Stacktrace:
  [1] getproperty(x::Module, f::Symbol)
    @ Base ./Base_compiler.jl:48
  [2] top-level scope
    @ ~/.julia/packages/GPUCompiler/2mJjc/src/jlgen.jl:308
  [3] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:308
  [4] top-level scope
    @ ~/.julia/packages/GPUCompiler/2mJjc/src/GPUCompiler.jl:35
  [5] include(mod::Module, _path::String)
    @ Base ./Base.jl:307
  [6] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2721
  [7] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2493
  [8] macro expansion
    @ ./loading.jl:2421 [inlined]
  [9] macro expansion
    @ ./lock.jl:376 [inlined]
 [10] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2386
 [11] #invoke_in_world#2
    @ ./essentials.jl:1092 [inlined]
 [12] invoke_in_world
    @ ./essentials.jl:1088 [inlined]
 [13] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2366
 [14] top-level scope
    @ ~/.julia/packages/CUDA/nbRJk/src/CUDA.jl:3
 [15] include(mod::Module, _path::String)
    @ Base ./Base.jl:307
 [16] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2721
 [17] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2493
 [18] macro expansion
    @ ./loading.jl:2421 [inlined]
 [19] macro expansion
    @ ./lock.jl:376 [inlined]
 [20] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2386
 [21] #invoke_in_world#2
    @ ./essentials.jl:1092 [inlined]
 [22] invoke_in_world
    @ ./essentials.jl:1088 [inlined]
 [23] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2366
 [24] top-level scope
    @ ~/.julia/packages/LiteQTL/X0a1l/src/LiteQTL.jl:7
 [25] include(mod::Module, _path::String)
    @ Base ./Base.jl:307
 [26] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2721
 [27] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2493
 [28] macro expansion
    @ ./loading.jl:2421 [inlined]
 [29] macro expansion
    @ ./lock.jl:376 [inlined]
 [30] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2386
 [31] #invoke_in_world#2
    @ ./essentials.jl:1092 [inlined]
 [32] invoke_in_world
    @ ./essentials.jl:1088 [inlined]
 [33] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2366
 [34] eval(m::Module, e::Any)
    @ Core ./boot.jl:488
 [35] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:294
 [36] _start()
    @ Base ./client.jl:560
in expression starting at /home/pkgeval/.julia/packages/GPUCompiler/2mJjc/src/jlgen.jl:308
in expression starting at /home/pkgeval/.julia/packages/GPUCompiler/2mJjc/src/GPUCompiler.jl:1
in expression starting at /home/pkgeval/.julia/packages/CUDA/nbRJk/src/CUDA.jl:1
in expression starting at /home/pkgeval/.julia/packages/LiteQTL/X0a1l/src/LiteQTL.jl:1

Loading failed after 194.37s

ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so -g1 --check-bounds=yes --inline=yes --pkgimages=existing -e 'using LiteQTL'`, ProcessExited(1)) [1]

Stacktrace:
 [1] pipeline_error
   @ ./process.jl:598 [inlined]
 [2] run(::Cmd; wait::Bool)
   @ Base ./process.jl:513
 [3] run(::Cmd)
   @ Base ./process.jl:510
 [4] top-level scope
   @ /PkgEval.jl/scripts/evaluate.jl:193
 [5] include(mod::Module, _path::String)
   @ Base ./Base.jl:307
 [6] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:328
 [7] _start()
   @ Base ./client.jl:560
in expression starting at /PkgEval.jl/scripts/evaluate.jl:184

PkgEval failed after 382.35s: illegal method overwrites during precompilation