Package evaluation of KrigingEstimators on Julia 1.13.0-DEV.111 (ce76dbf07d*) started at 2025-02-28T06:02:54.961 ################################################################################ # Set-up # Set-up completed after 0.19s ################################################################################ # Installation # Installing KrigingEstimators... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [d293930c] + KrigingEstimators v0.12.1 Updating `~/.julia/environments/v1.13/Manifest.toml` [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.2.0 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.4.0 [4fba245c] + ArrayInterface v7.18.0 [39de3d68] + AxisArrays v0.4.7 [198e06fe] + BangBang v0.4.4 [9718e550] + Baselet v0.1.1 [0e736298] + Bessels v0.2.8 [324d7699] + CategoricalArrays v0.10.8 [d360d2e6] + ChainRulesCore v1.25.1 [7a955b69] + CircularArrays v1.4.0 [5900dafe] + CoDa v1.4.0 [3da002f7] + ColorTypes v0.12.0 ⌅ [9cc86067] + ColumnSelectors v0.1.1 [861a8166] + Combinatorics v1.0.2 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.5.8 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 ⌅ [6cb2f572] + DataScienceTraits v0.1.0 [864edb3b] + DataStructures v0.18.20 [e2d170a0] + DataValueInterfaces v1.0.0 [244e2a9f] + DefineSingletons v0.1.2 [ab46fb84] + DensityRatioEstimation v1.3.1 [85a47980] + Dictionaries v0.4.4 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.117 [ffbed154] + DocStringExtensions v0.9.3 [1a297f60] + FillArrays v1.13.0 [6a86dc24] + FiniteDiff v2.27.0 [53c48c17] + FixedPointNumbers v0.8.5 [f6369f11] + ForwardDiff v0.10.38 [46192b85] + GPUArraysCore v0.2.0 ⌅ [323cb8eb] + GeoStatsBase v0.35.3 ⌃ [e502b557] + GeoTables v1.9.1 [34004b35] + HypergeometricFunctions v0.3.27 [313cdc1a] + Indexing v1.1.1 [22cec73e] + InitialValues v0.3.1 [8197267c] + IntervalSets v0.7.10 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.4 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [d293930c] + KrigingEstimators v0.12.1 [b964fa9f] + LaTeXStrings v1.4.0 [d3d80556] + LineSearches v7.3.0 [2ab3a3ac] + LogExpFunctions v0.3.29 ⌅ [30fc2ffe] + LossFunctions v0.11.2 [e80e1ace] + MLJModelInterface v1.11.0 [1914dd2f] + MacroTools v0.5.15 ⌅ [eacbb407] + Meshes v0.35.21 [128add7d] + MicroCollections v0.2.0 [e1d29d7a] + Missings v1.2.0 [d41bc354] + NLSolversBase v7.8.3 [77ba4419] + NaNMath v1.1.2 [b8a86587] + NearestNeighbors v0.4.21 [2f6b4ddb] + NelderMead v0.4.0 [6fe1bfb0] + OffsetArrays v1.15.0 [429524aa] + Optim v1.11.0 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.32 [d96e819e] + Parameters v0.12.3 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [92933f4c] + ProgressMeter v1.10.2 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [94ee1d12] + Quaternions v0.7.6 [b3c3ace0] + RangeArrays v0.3.2 [c1ae055f] + RealDot v0.1.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [6038ab10] + Rotations v1.7.1 [321657f4] + ScientificTypes v3.1.0 [30f210dd] + ScientificTypesBase v3.0.0 [efcf1570] + Setfield v1.1.2 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.0 [03a91e81] + SplitApplyCombine v1.2.3 [171d559e] + SplittablesBase v0.1.15 [90137ffa] + StaticArrays v1.9.12 [1e83bf80] + StaticArraysCore v1.4.3 [64bff920] + StatisticalTraits v3.4.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [4c63d2b9] + StatsFuns v1.3.2 [892a3eda] + StringManipulation v0.4.1 [3783bdb8] + TableTraits v1.0.1 ⌃ [0d432bfd] + TableTransforms v1.21.0 [bd369af6] + Tables v1.12.0 [28d57a85] + Transducers v0.4.84 [28dd2a49] + TransformsBase v1.6.0 [9d95f2ec] + TypedTables v1.4.6 [3a884ed6] + UnPack v1.0.2 [1986cc42] + Unitful v1.22.0 ⌅ [04a0146e] + Variography v0.18.2 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.3.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 5.3s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml` No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml` Precompiling package dependencies... Precompiling packages... 4058.3 ms ✓ DataScienceTraits 18238.5 ms ✓ Meshes 1049.9 ms ✓ DataScienceTraits → DataScienceTraitsCategoricalArraysExt 2401.0 ms ✓ DataScienceTraits → DataScienceTraitsUnitfulExt 6467.1 ms ✓ DataScienceTraits → DataScienceTraitsCoDaExt 7530.2 ms ✓ GeoTables 17935.3 ms ? TableTransforms 183024.3 ms ? GeoStatsBase 19938.2 ms ? Variography 19147.8 ms ? KrigingEstimators 6 dependencies successfully precompiled in 315 seconds. 177 already precompiled. 4 dependencies failed but may be precompilable after restarting julia 4 dependencies had output during precompilation: ┌ Variography │ WARNING: Imported binding TableTransforms.ColSpec was undeclared at import time during import to GeoStatsBase. │ WARNING: Imported binding TableTransforms.Col was undeclared at import time during import to GeoStatsBase. │ WARNING: Imported binding TableTransforms.AllSpec was undeclared at import time during import to GeoStatsBase. │ WARNING: Imported binding TableTransforms.NoneSpec was undeclared at import time during import to GeoStatsBase. │ WARNING: Imported binding TableTransforms.colspec was undeclared at import time during import to GeoStatsBase. │ WARNING: Imported binding TableTransforms.choose was undeclared at import time during import to GeoStatsBase. │ WARNING: Method definition partitioninds(Random.AbstractRNG, GeoTables.AbstractGeoTable, Meshes.PartitionMethod) in module GeoTables at /home/pkgeval/.julia/packages/GeoTables/pM3bS/src/indices.jl:5 overwritten in module GeoStatsBase at /home/pkgeval/.julia/packages/GeoStatsBase/McgmE/src/geotables.jl:5. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ KrigingEstimators │ WARNING: Imported binding TableTransforms.ColSpec was undeclared at import time during import to GeoStatsBase. │ WARNING: Imported binding TableTransforms.Col was undeclared at import time during import to GeoStatsBase. │ WARNING: Imported binding TableTransforms.AllSpec was undeclared at import time during import to GeoStatsBase. │ WARNING: Imported binding TableTransforms.NoneSpec was undeclared at import time during import to GeoStatsBase. │ WARNING: Imported binding TableTransforms.colspec was undeclared at import time during import to GeoStatsBase. │ WARNING: Imported binding TableTransforms.choose was undeclared at import time during import to GeoStatsBase. │ WARNING: Method definition partitioninds(Random.AbstractRNG, GeoTables.AbstractGeoTable, Meshes.PartitionMethod) in module GeoTables at /home/pkgeval/.julia/packages/GeoTables/pM3bS/src/indices.jl:5 overwritten in module GeoStatsBase at /home/pkgeval/.julia/packages/GeoStatsBase/McgmE/src/geotables.jl:5. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ TableTransforms │ WARNING: Method definition (::Type{PDMats.AbstractPDMat{T} where T<:Real})(LinearAlgebra.Diagonal{T, var"#s1"} where var"#s1"<:(FillArrays.AbstractFill{T, 1, Axes} where Axes)) where {T<:Real} in module FillArraysPDMatsExt at /home/pkgeval/.julia/packages/FillArrays/lVl4c/ext/FillArraysPDMatsExt.jl:7 overwritten in module FillArraysPDMatsExt on the same line (check for duplicate calls to `include`). │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ GeoStatsBase │ WARNING: Imported binding TableTransforms.ColSpec was undeclared at import time during import to GeoStatsBase. │ WARNING: Imported binding TableTransforms.Col was undeclared at import time during import to GeoStatsBase. │ WARNING: Imported binding TableTransforms.AllSpec was undeclared at import time during import to GeoStatsBase. │ WARNING: Imported binding TableTransforms.NoneSpec was undeclared at import time during import to GeoStatsBase. │ WARNING: Imported binding TableTransforms.colspec was undeclared at import time during import to GeoStatsBase. │ WARNING: Imported binding TableTransforms.choose was undeclared at import time during import to GeoStatsBase. │ WARNING: Method definition partitioninds(Random.AbstractRNG, GeoTables.AbstractGeoTable, Meshes.PartitionMethod) in module GeoTables at /home/pkgeval/.julia/packages/GeoTables/pM3bS/src/indices.jl:5 overwritten in module GeoStatsBase at /home/pkgeval/.julia/packages/GeoStatsBase/McgmE/src/geotables.jl:5. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ Precompilation completed after 285.54s ################################################################################ # Loading # Loading KrigingEstimators... Precompiling packages... 11465.4 ms ? GeoStatsBase 18914.8 ms ? Variography Info Given KrigingEstimators was explicitly requested, output will be shown live  WARNING: Imported binding TableTransforms.ColSpec was undeclared at import time during import to GeoStatsBase. WARNING: Imported binding TableTransforms.Col was undeclared at import time during import to GeoStatsBase. WARNING: Imported binding TableTransforms.AllSpec was undeclared at import time during import to GeoStatsBase. WARNING: Imported binding TableTransforms.NoneSpec was undeclared at import time during import to GeoStatsBase. WARNING: Imported binding TableTransforms.colspec was undeclared at import time during import to GeoStatsBase. WARNING: Imported binding TableTransforms.choose was undeclared at import time during import to GeoStatsBase. WARNING: Method definition partitioninds(Random.AbstractRNG, GeoTables.AbstractGeoTable, Meshes.PartitionMethod) in module GeoTables at /home/pkgeval/.julia/packages/GeoTables/pM3bS/src/indices.jl:5 overwritten in module GeoStatsBase at /home/pkgeval/.julia/packages/GeoStatsBase/McgmE/src/geotables.jl:5. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 18041.6 ms ? KrigingEstimators WARNING: Imported binding TableTransforms.ColSpec was undeclared at import time during import to GeoStatsBase. WARNING: Imported binding TableTransforms.Col was undeclared at import time during import to GeoStatsBase. WARNING: Imported binding TableTransforms.AllSpec was undeclared at import time during import to GeoStatsBase. WARNING: Imported binding TableTransforms.NoneSpec was undeclared at import time during import to GeoStatsBase. WARNING: Imported binding TableTransforms.colspec was undeclared at import time during import to GeoStatsBase. WARNING: Imported binding TableTransforms.choose was undeclared at import time during import to GeoStatsBase. WARNING: Method definition partitioninds(Random.AbstractRNG, GeoTables.AbstractGeoTable, Meshes.PartitionMethod) in module GeoTables at /home/pkgeval/.julia/packages/GeoTables/pM3bS/src/indices.jl:5 overwritten in module GeoStatsBase at /home/pkgeval/.julia/packages/GeoStatsBase/McgmE/src/geotables.jl:5. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. Precompiling packages... Info Given GeoStatsBase was explicitly requested, output will be shown live  WARNING: Imported binding TableTransforms.ColSpec was undeclared at import time during import to GeoStatsBase. WARNING: Imported binding TableTransforms.Col was undeclared at import time during import to GeoStatsBase. WARNING: Imported binding TableTransforms.AllSpec was undeclared at import time during import to GeoStatsBase. WARNING: Imported binding TableTransforms.NoneSpec was undeclared at import time during import to GeoStatsBase. WARNING: Imported binding TableTransforms.colspec was undeclared at import time during import to GeoStatsBase. WARNING: Imported binding TableTransforms.choose was undeclared at import time during import to GeoStatsBase. WARNING: Method definition partitioninds(Random.AbstractRNG, GeoTables.AbstractGeoTable, Meshes.PartitionMethod) in module GeoTables at /home/pkgeval/.julia/packages/GeoTables/pM3bS/src/indices.jl:5 overwritten in module GeoStatsBase at /home/pkgeval/.julia/packages/GeoStatsBase/McgmE/src/geotables.jl:5. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 10788.3 ms ? GeoStatsBase WARNING: Imported binding TableTransforms.ColSpec was undeclared at import time during import to GeoStatsBase. WARNING: Imported binding TableTransforms.Col was undeclared at import time during import to GeoStatsBase. WARNING: Imported binding TableTransforms.AllSpec was undeclared at import time during import to GeoStatsBase. WARNING: Imported binding TableTransforms.NoneSpec was undeclared at import time during import to GeoStatsBase. WARNING: Imported binding TableTransforms.colspec was undeclared at import time during import to GeoStatsBase. WARNING: Imported binding TableTransforms.choose was undeclared at import time during import to GeoStatsBase. WARNING: Method definition partitioninds(Random.AbstractRNG, GeoTables.AbstractGeoTable, Meshes.PartitionMethod) in module GeoTables at /home/pkgeval/.julia/packages/GeoTables/pM3bS/src/indices.jl:5 overwritten in module GeoStatsBase at /home/pkgeval/.julia/packages/GeoStatsBase/McgmE/src/geotables.jl:5. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. WARNING: Imported binding TableTransforms.ColSpec was undeclared at import time during import to GeoStatsBase. WARNING: Imported binding TableTransforms.Col was undeclared at import time during import to GeoStatsBase. WARNING: Imported binding TableTransforms.AllSpec was undeclared at import time during import to GeoStatsBase. WARNING: Imported binding TableTransforms.NoneSpec was undeclared at import time during import to GeoStatsBase. WARNING: Imported binding TableTransforms.colspec was undeclared at import time during import to GeoStatsBase. WARNING: Imported binding TableTransforms.choose was undeclared at import time during import to GeoStatsBase. ERROR: LoadError: UndefVarError: `ColSpec` not defined in `GeoStatsBase` Stacktrace: [1] top-level scope @ ~/.julia/packages/GeoStatsBase/McgmE/src/geoops/describe.jl:4 [2] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:308 [3] top-level scope @ ~/.julia/packages/GeoStatsBase/McgmE/src/geoops.jl:6 [4] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:308 [5] top-level scope @ ~/.julia/packages/GeoStatsBase/McgmE/src/GeoStatsBase.jl:54 [6] include(mod::Module, _path::String) @ Base ./Base.jl:307 [7] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2721 [8] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2493 [9] macro expansion @ ./loading.jl:2421 [inlined] [10] macro expansion @ ./lock.jl:376 [inlined] [11] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2386 [12] #invoke_in_world#2 @ ./essentials.jl:1092 [inlined] [13] invoke_in_world @ ./essentials.jl:1088 [inlined] [14] require(into::Module, mod::Symbol) @ Base ./loading.jl:2366 [15] top-level scope @ ~/.julia/packages/KrigingEstimators/Mhe6t/src/KrigingEstimators.jl:9 [16] include(mod::Module, _path::String) @ Base ./Base.jl:307 [17] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2721 [18] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2493 [19] macro expansion @ ./loading.jl:2421 [inlined] [20] macro expansion @ ./lock.jl:376 [inlined] [21] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2386 [22] #invoke_in_world#2 @ ./essentials.jl:1092 [inlined] [23] invoke_in_world @ ./essentials.jl:1088 [inlined] [24] require(into::Module, mod::Symbol) @ Base ./loading.jl:2366 [25] eval(m::Module, e::Any) @ Core ./boot.jl:488 [26] exec_options(opts::Base.JLOptions) @ Base ./client.jl:294 [27] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/GeoStatsBase/McgmE/src/geoops/describe.jl:4 in expression starting at /home/pkgeval/.julia/packages/GeoStatsBase/McgmE/src/geoops.jl:6 in expression starting at /home/pkgeval/.julia/packages/GeoStatsBase/McgmE/src/GeoStatsBase.jl:5 in expression starting at /home/pkgeval/.julia/packages/KrigingEstimators/Mhe6t/src/KrigingEstimators.jl:5 Loading failed after 124.54s ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so -g1 --check-bounds=yes --inline=yes --pkgimages=existing -e 'using KrigingEstimators'`, ProcessExited(1)) [1] Stacktrace: [1] pipeline_error @ ./process.jl:598 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:513 [3] run(::Cmd) @ Base ./process.jl:510 [4] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:193 [5] include(mod::Module, _path::String) @ Base ./Base.jl:307 [6] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [7] _start() @ Base ./client.jl:560 in expression starting at /PkgEval.jl/scripts/evaluate.jl:184 PkgEval failed after 471.39s: illegal method overwrites during precompilation