Package evaluation of DynamicHMCModels on Julia 1.13.0-DEV.111 (ce76dbf07d*) started at 2025-02-28T05:25:09.391 ################################################################################ # Set-up # Set-up completed after 0.22s ################################################################################ # Installation # Installing DynamicHMCModels... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [6266e5bf] + DynamicHMCModels v2.1.4 Updating `~/.julia/environments/v1.13/Manifest.toml` [79e6a3ab] + Adapt v4.2.0 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.4.0 [4fba245c] + ArrayInterface v7.18.0 ⌅ [6e4b80f9] + BenchmarkTools v0.7.0 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [2a0fbf3d] + CPUSummary v0.2.6 ⌅ [336ed68f] + CSV v0.8.5 [d360d2e6] + ChainRulesCore v1.25.1 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.16.0 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 ⌃ [a93c6f00] + DataFrames v1.4.4 [864edb3b] + DataStructures v0.18.20 [e2d170a0] + DataValueInterfaces v1.0.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [31c24e10] + Distributions v0.25.117 ⌅ [ffbed154] + DocStringExtensions v0.8.6 ⌃ [bbc10e6e] + DynamicHMC v3.3.0 [6266e5bf] + DynamicHMCModels v2.1.4 [1a297f60] + FillArrays v1.13.0 [f6369f11] + ForwardDiff v0.10.38 ⌅ [46192b85] + GPUArraysCore v0.1.6 [3e5b6fbb] + HostCPUFeatures v0.1.17 [615f187c] + IfElse v0.1.1 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 ⌅ [92d709cd] + IrrationalConstants v0.1.1 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [b964fa9f] + LaTeXStrings v1.4.0 [10f19ff3] + LayoutPointers v0.1.17 [1fad7336] + LazyStack v0.1.3 ⌅ [6fdf6af0] + LogDensityProblems v0.10.6 [2ab3a3ac] + LogExpFunctions v0.3.29 ⌅ [6e857e4b] + MCMCDiagnostics v0.3.0 [1914dd2f] + MacroTools v0.5.15 [d125e4d3] + ManualMemory v0.1.8 [e1d29d7a] + Missings v1.2.0 ⌅ [0987c9cc] + MonteCarloMeasurements v0.10.4 [77ba4419] + NaNMath v1.1.2 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.32 [65ce6f38] + PackageExtensionCompat v1.0.2 [d96e819e] + Parameters v0.12.3 ⌅ [69de0a69] + Parsers v1.1.2 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [92933f4c] + ProgressMeter v1.10.2 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 ⌅ [79098fc4] + Rmath v0.7.1 [94e857df] + SIMDTypes v0.1.0 [476501e8] + SLEEFPirates v0.6.43 [91c51154] + SentinelArrays v1.4.8 [66db9d55] + SnoopPrecompile v1.0.3 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.0 [aedffcd0] + Static v1.1.1 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.12 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 ⌅ [2913bbd2] + StatsBase v0.33.21 ⌅ [4c63d2b9] + StatsFuns v0.9.18 [5e0ebb24] + Strided v2.2.0 [4db3bf67] + StridedViews v0.3.2 [892a3eda] + StringManipulation v0.4.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [02d47bb6] + TensorCast v0.4.8 ⌅ [84d833dd] + TransformVariables v0.3.12 [24ddb15e] + TransmuteDims v0.1.16 [9d95972d] + TupleTools v1.6.0 [3a884ed6] + UnPack v1.0.2 [3d5dd08c] + VectorizationBase v0.21.71 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 ⌅ [f50d1b31] + Rmath_jll v0.4.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.11.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2024.12.31 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 7.39s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml` No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml` Precompiling package dependencies... Precompiling packages... 2703.4 ms ✓ BenchmarkTools 5131.4 ms ✓ SpecialFunctions 10025.0 ms ✓ StatsBase 4192.5 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 11045.8 ms ✓ ForwardDiff 4835.5 ms ✓ MCMCDiagnostics 10064.1 ms ✓ StatsFuns 5633.9 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 5541.6 ms ✓ TransformVariables 18621.2 ms ✓ Distributions 5164.5 ms ✓ LogDensityProblems 7424.2 ms ✓ Distributions → DistributionsTestExt 7128.5 ms ✓ Distributions → DistributionsChainRulesCoreExt 53009.8 ms ✓ DynamicHMC 71084.4 ms ✓ MonteCarloMeasurements 120147.7 ms ✓ DynamicHMCModels 16 dependencies successfully precompiled in 347 seconds. 134 already precompiled. Precompilation completed after 357.42s ################################################################################ # Loading # Loading DynamicHMCModels... ┌ Warning: Error requiring `ForwardDiff` from `LogDensityProblems` │ exception = │ LoadError: ConcurrencyViolationError("deadlock detected in loading Unicode -> Unicode && StatsFuns && VectorizationBase && AliasTables && CSV && TensorCast && ChainRulesCoreSparseArraysExt && TableTraits && SentinelArrays && Parsers && FillArraysStatisticsExt && Rmath && SpecialFunctionsChainRulesCoreExt && Compat && SnoopPrecompile && StaticArraysChainRulesCoreExt && DataStructures && DynamicHMC && StridedViews && Rmath_jll && ArrayInterfaceGPUArraysCoreExt && REPL && LogExpFunctionsInverseFunctionsExt && CpuId && LayoutPointers && MonteCarloMeasurements && CPUSummary && FillArrays && DataValueInterfaces && StaticArrays && InverseFunctionsDatesExt && Serialization && LazyStack && StatsBase && StyledStrings && LaTeXStrings && TransmuteDims && AdaptStaticArraysExt && InvertedIndices && ForwardDiffStaticArraysExt && PDMats && InverseFunctions && StaticArrayInterface && SuiteSparse && HostCPUFeatures && SIMDTypes && LogExpFunctionsChainRulesCoreExt && FillArraysSparseArraysExt && Tables && ArrayInterfaceChainRulesCoreExt && Distributions && Statistics && SparseArrays && BenchmarkTools && IfElse && AdaptSparseArraysExt && RecipesBase && PooledArrays && ArrayInterface && Adapt && IteratorInterfaceExtensions && ArrayInterfaceSparseArraysExt && DataFrames && Base64 && CommonWorldInvalidations && Markdown && DataAPI && PrecompileTools && DynamicHMCModels && StatsAPI && PackageExtensionCompat && Crayons && SparseArraysExt && Static && Distributed && ArrayInterfaceStaticArraysCoreExt && SuiteSparse_jll && Mmap && SortingAlgorithms && ProgressMeter && Strided && Future && CompatLinearAlgebraExt && PrettyTables && StringManipulation && DistributionsChainRulesCoreExt && InteractiveUtils && LogDensityProblems && ChainRulesCore && PtrArrays && QuadGK && BitTwiddlingConvenienceFunctions && StaticArraysStatisticsExt && TupleTools && FillArraysPDMatsExt && JuliaSyntaxHighlighting && SLEEFPirates && GPUArraysCore && ManualMemory && StaticArrayInterfaceStaticArraysExt && Missings") │ Stacktrace: │ [1] canstart_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) │ @ Base ./loading.jl:2214 │ [2] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) │ @ Base ./loading.jl:2055 │ [3] __require_prelocked(pkg::Base.PkgId, env::String) │ @ Base ./loading.jl:2630 │ [4] _require_prelocked(uuidkey::Base.PkgId, env::String) │ @ Base ./loading.jl:2493 │ [5] macro expansion │ @ ./loading.jl:2421 [inlined] │ [6] macro expansion │ @ ./lock.jl:376 [inlined] │ [7] __require(into::Module, mod::Symbol) │ @ Base ./loading.jl:2386 │ [8] #invoke_in_world#2 │ @ ./essentials.jl:1092 [inlined] │ [9] invoke_in_world │ @ ./essentials.jl:1088 [inlined] │ [10] require(into::Module, mod::Symbol) │ @ Base ./loading.jl:2366 │ [11] include(mapexpr::Function, mod::Module, _path::String) │ @ Base ./Base.jl:308 │ [12] top-level scope │ @ ~/.julia/packages/Requires/1eCOK/src/Requires.jl:40 │ [13] eval(m::Module, e::Any) │ @ Core ./boot.jl:488 │ [14] EvalInto │ @ ./boot.jl:493 [inlined] │ [15] (::LogDensityProblems.var"#__init__##10#__init__##11")() │ @ LogDensityProblems ~/.julia/packages/Requires/1eCOK/src/require.jl:101 │ [16] macro expansion │ @ ./timing.jl:461 [inlined] │ [17] err(f::Any, listener::Module, modname::String, file::String, line::Any) │ @ Requires ~/.julia/packages/Requires/1eCOK/src/require.jl:47 │ [18] (::LogDensityProblems.var"#__init__##8#__init__##9")() │ @ LogDensityProblems ~/.julia/packages/Requires/1eCOK/src/require.jl:100 │ [19] withpath(f::Any, path::String) │ @ Requires ~/.julia/packages/Requires/1eCOK/src/require.jl:37 │ [20] (::LogDensityProblems.var"#__init__##6#__init__##7")() │ @ LogDensityProblems ~/.julia/packages/Requires/1eCOK/src/require.jl:99 │ [21] listenpkg(f::Any, pkg::Base.PkgId) │ @ Requires ~/.julia/packages/Requires/1eCOK/src/require.jl:20 │ [22] macro expansion │ @ ~/.julia/packages/Requires/1eCOK/src/require.jl:98 [inlined] │ [23] __init__() │ @ LogDensityProblems ~/.julia/packages/LogDensityProblems/mTlVj/src/LogDensityProblems.jl:234 │ [24] run_module_init(mod::Module, i::Int64) │ @ Base ./loading.jl:1424 │ [25] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) │ @ Base ./loading.jl:1412 │ [26] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}, ignore_native::Nothing; register::Bool) │ @ Base ./loading.jl:1300 │ [27] _include_from_serialized (repeats 2 times) │ @ ./loading.jl:1246 [inlined] │ [28] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) │ @ Base ./loading.jl:2113 │ [29] __require_prelocked(pkg::Base.PkgId, env::String) │ @ Base ./loading.jl:2630 │ [30] _require_prelocked(uuidkey::Base.PkgId, env::String) │ @ Base ./loading.jl:2493 │ [31] macro expansion │ @ ./loading.jl:2421 [inlined] │ [32] macro expansion │ @ ./lock.jl:376 [inlined] │ [33] __require(into::Module, mod::Symbol) │ @ Base ./loading.jl:2386 │ [34] #invoke_in_world#2 │ @ ./essentials.jl:1092 [inlined] │ [35] invoke_in_world │ @ ./essentials.jl:1088 [inlined] │ [36] require(into::Module, mod::Symbol) │ @ Base ./loading.jl:2366 │ [37] eval(m::Module, e::Any) │ @ Core ./boot.jl:488 │ [38] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:294 │ [39] _start() │ @ Base ./client.jl:560 │ in expression starting at /home/pkgeval/.julia/packages/LogDensityProblems/mTlVj/src/AD_ForwardDiff.jl:6 └ @ Requires ~/.julia/packages/Requires/1eCOK/src/require.jl:51 Loading completed after 36.05s PkgEval succeeded after 423.09s