Package evaluation of BoundaryLayerDynamics on Julia 1.13.0-DEV.111 (ce76dbf07d*) started at 2025-02-28T01:42:12.910 ################################################################################ # Set-up # Set-up completed after 0.26s ################################################################################ # Installation # Installing BoundaryLayerDynamics... Resolving package versions... Installed HDF5 ─ v0.16.16 Updating `~/.julia/environments/v1.13/Project.toml` [9d12ad70] + BoundaryLayerDynamics v1.0.0 Updating `~/.julia/environments/v1.13/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 ⌅ [79e6a3ab] + Adapt v3.7.2 ⌃ [4fba245c] + ArrayInterface v7.7.1 [9d12ad70] + BoundaryLayerDynamics v1.0.0 [34da2185] + Compat v4.16.0 [9a962f9c] + DataAPI v1.16.0 [e2d170a0] + DataValueInterfaces v1.0.0 [ffbed154] + DocStringExtensions v0.9.3 [e2ba6199] + ExprTools v0.1.10 [7a1cc6ca] + FFTW v1.8.1 ⌅ [46192b85] + GPUArraysCore v0.1.5 ⌅ [f67ccb44] + HDF5 v0.16.16 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [da04e1cc] + MPI v0.20.22 [3da0fdf6] + MPIPreferences v0.1.11 [bac558e1] + OrderedCollections v1.8.0 [69de0a69] + Parsers v2.8.1 [eebad327] + PkgVersion v0.3.3 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [3cdcf5f2] + RecipesBase v1.3.4 ⌅ [731186ca] + RecursiveArrayTools v2.38.10 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 ⌅ [2efcf032] + SymbolicIndexingInterface v0.2.2 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [a759f4b9] + TimerOutputs v0.5.27 [f5851436] + FFTW_jll v3.3.10+3 [0234f1f7] + HDF5_jll v1.14.5+0 [e33a78d0] + Hwloc_jll v2.12.0+0 [1d5cc7b8] + IntelOpenMP_jll v2025.0.4+0 [856f044c] + MKL_jll v2025.0.1+1 [7cb0a576] + MPICH_jll v4.3.0+0 [f1f71cc9] + MPItrampoline_jll v5.5.2+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.7+0 [477f73a3] + libaec_jll v1.1.3+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.11.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2024.12.31 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Building HDF5 → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/114e20044677badbc631ee6fdc80a67920561a29/build.log` Installation completed after 15.01s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml` No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml` Precompiling package dependencies... Precompilation completed after 15.83s ################################################################################ # Loading # Loading BoundaryLayerDynamics... Precompiling packages... 17195.7 ms ✓ HDF5 1 dependency successfully precompiled in 18 seconds. 41 already precompiled. ┌ Warning: Error requiring `MPI` from `HDF5.Drivers` │ exception = │ LoadError: ConcurrencyViolationError("deadlock detected in loading HDF5 -> HDF5 && BoundaryLayerDynamics") │ Stacktrace: │ [1] canstart_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) │ @ Base ./loading.jl:2214 │ [2] start_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) │ @ Base ./loading.jl:2222 │ [3] _require_prelocked(uuidkey::Base.PkgId, env::Nothing) │ @ Base ./loading.jl:2488 │ [4] macro expansion │ @ ./loading.jl:2421 [inlined] │ [5] macro expansion │ @ ./lock.jl:376 [inlined] │ [6] __require(into::Module, mod::Symbol) │ @ Base ./loading.jl:2386 │ [7] #invoke_in_world#2 │ @ ./essentials.jl:1092 [inlined] │ [8] invoke_in_world │ @ ./essentials.jl:1088 [inlined] │ [9] require(into::Module, mod::Symbol) │ @ Base ./loading.jl:2366 │ [10] include(mapexpr::Function, mod::Module, _path::String) │ @ Base ./Base.jl:308 │ [11] top-level scope │ @ ~/.julia/packages/Requires/1eCOK/src/Requires.jl:40 │ [12] eval(m::Module, e::Any) │ @ Core ./boot.jl:488 │ [13] EvalInto │ @ ./boot.jl:493 [inlined] │ [14] (::HDF5.Drivers.var"#__init__##6#__init__##7")() │ @ HDF5.Drivers ~/.julia/packages/Requires/1eCOK/src/require.jl:101 │ [15] macro expansion │ @ ./timing.jl:461 [inlined] │ [16] err(f::Any, listener::Module, modname::String, file::String, line::Any) │ @ Requires ~/.julia/packages/Requires/1eCOK/src/require.jl:47 │ [17] (::HDF5.Drivers.var"#__init__##4#__init__##5")() │ @ HDF5.Drivers ~/.julia/packages/Requires/1eCOK/src/require.jl:100 │ [18] withpath(f::Any, path::String) │ @ Requires ~/.julia/packages/Requires/1eCOK/src/require.jl:37 │ [19] (::HDF5.Drivers.var"#__init__##2#__init__##3")() │ @ HDF5.Drivers ~/.julia/packages/Requires/1eCOK/src/require.jl:99 │ [20] listenpkg(f::Any, pkg::Base.PkgId) │ @ Requires ~/.julia/packages/Requires/1eCOK/src/require.jl:20 │ [21] macro expansion │ @ ~/.julia/packages/Requires/1eCOK/src/require.jl:98 [inlined] │ [22] __init__() │ @ HDF5.Drivers ~/.julia/packages/HDF5/MIuzl/src/drivers/drivers.jl:92 │ [23] run_module_init(mod::Module, i::Int64) │ @ Base ./loading.jl:1424 │ [24] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) │ @ Base ./loading.jl:1412 │ [25] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}, ignore_native::Nothing; register::Bool) │ @ Base ./loading.jl:1300 │ [26] _include_from_serialized (repeats 2 times) │ @ ./loading.jl:1246 [inlined] │ [27] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) │ @ Base ./loading.jl:2126 │ [28] __require_prelocked(pkg::Base.PkgId, env::String) │ @ Base ./loading.jl:2630 │ [29] _require_prelocked(uuidkey::Base.PkgId, env::String) │ @ Base ./loading.jl:2493 │ [30] macro expansion │ @ ./loading.jl:2421 [inlined] │ [31] macro expansion │ @ ./lock.jl:376 [inlined] │ [32] __require(into::Module, mod::Symbol) │ @ Base ./loading.jl:2386 │ [33] #invoke_in_world#2 │ @ ./essentials.jl:1092 [inlined] │ [34] invoke_in_world │ @ ./essentials.jl:1088 [inlined] │ [35] require(into::Module, mod::Symbol) │ @ Base ./loading.jl:2366 │ [36] top-level scope │ @ ~/.julia/packages/BoundaryLayerDynamics/x9Zng/src/logging.jl:5 │ [37] include(mapexpr::Function, mod::Module, _path::String) │ @ Base ./Base.jl:308 │ [38] top-level scope │ @ ~/.julia/packages/BoundaryLayerDynamics/x9Zng/src/BoundaryLayerDynamics.jl:25 │ [39] include(mod::Module, _path::String) │ @ Base ./Base.jl:307 │ [40] __require_prelocked(pkg::Base.PkgId, env::String) │ @ Base ./loading.jl:2721 │ [41] _require_prelocked(uuidkey::Base.PkgId, env::String) │ @ Base ./loading.jl:2493 │ [42] macro expansion │ @ ./loading.jl:2421 [inlined] │ [43] macro expansion │ @ ./lock.jl:376 [inlined] │ [44] __require(into::Module, mod::Symbol) │ @ Base ./loading.jl:2386 │ [45] #invoke_in_world#2 │ @ ./essentials.jl:1092 [inlined] │ [46] invoke_in_world │ @ ./essentials.jl:1088 [inlined] │ [47] require(into::Module, mod::Symbol) │ @ Base ./loading.jl:2366 │ [48] eval(m::Module, e::Any) │ @ Core ./boot.jl:488 │ [49] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:294 │ [50] _start() │ @ Base ./client.jl:560 │ in expression starting at /home/pkgeval/.julia/packages/HDF5/MIuzl/src/drivers/mpio.jl:3 └ @ Requires ~/.julia/packages/Requires/1eCOK/src/require.jl:51 Precompiling packages... 8380.6 ms ✓ RecursiveArrayTools 1 dependency successfully precompiled in 8 seconds. 34 already precompiled. Loading completed after 48.83s PkgEval succeeded after 94.35s