Package evaluation of OMETIFF on Julia 1.13.0-DEV.943 (cce193b1aa*) started at 2025-08-02T07:42:42.025 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.2s ################################################################################ # Installation # Installing OMETIFF... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [2d0ec36b] + OMETIFF v0.4.5 Updating `~/.julia/environments/v1.13/Manifest.toml` [39de3d68] + AxisArrays v0.4.7 ⌅ [3da002f7] + ColorTypes v0.11.5 ⌃ [c3611d14] + ColorVectorSpace v0.10.0 [5ae59095] + Colors v0.13.1 [34da2185] + Compat v4.18.0 ⌅ [864edb3b] + DataStructures v0.18.22 [ffbed154] + DocStringExtensions v0.9.5 [8f5d6c58] + EzXML v1.2.2 [5789e2e9] + FileIO v1.17.0 [53c48c17] + FixedPointNumbers v0.8.5 [2803e5a7] + ImageAxes v0.6.12 [c817782e] + ImageBase v0.1.7 [a09fc81d] + ImageCore v0.10.5 [bc367c6b] + ImageMetadata v0.9.10 [9b13fd28] + IndirectArrays v1.0.0 [d25df0c9] + Inflate v0.1.5 [8197267c] + IntervalSets v0.7.11 [c8e1da08] + IterTools v1.10.0 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v0.21.4 [1914dd2f] + MacroTools v0.5.16 [dbb5928d] + MappedArrays v0.4.2 [e94cdb99] + MosaicViews v0.3.4 [2d0ec36b] + OMETIFF v0.4.5 [6fe1bfb0] + OffsetArrays v1.17.0 [bac558e1] + OrderedCollections v1.8.1 [5432bcbf] + PaddedViews v0.5.12 [69de0a69] + Parsers v2.8.3 [eebad327] + PkgVersion v0.3.3 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [92933f4c] + ProgressMeter v1.10.4 [b3c3ace0] + RangeArrays v0.3.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [fdea26ae] + SIMD v3.7.1 [699a6c99] + SimpleTraits v0.9.4 [cae243ae] + StackViews v0.1.2 [10745b16] + Statistics v1.11.1 [62fd8b95] + TensorCore v0.1.1 ⌅ [731e570b] + TiffImages v0.9.1 [1986cc42] + Unitful v1.24.0 [94ce4f54] + Libiconv_jll v1.18.0+0 [02c8fc9c] + XML2_jll v2.14.4+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.7.15 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.5.1+0 [efcefdf7] + PCRE2_jll v10.45.0+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 5.27s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 318.75s ################################################################################ # Testing # Testing OMETIFF Status `/tmp/jl_zJLzPI/Project.toml` [39de3d68] AxisArrays v0.4.7 ⌅ [864edb3b] DataStructures v0.18.22 [ffbed154] DocStringExtensions v0.9.5 [8f5d6c58] EzXML v1.2.2 [5789e2e9] FileIO v1.17.0 [6218d12a] ImageMagick v1.4.2 [bc367c6b] ImageMetadata v0.9.10 [682c06a0] JSON v0.21.4 [2d0ec36b] OMETIFF v0.4.5 [92933f4c] ProgressMeter v1.10.4 [dca85d43] QuartzImageIO v0.7.5 ⌅ [731e570b] TiffImages v0.9.1 [1986cc42] Unitful v1.24.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 Status `/tmp/jl_zJLzPI/Manifest.toml` [39de3d68] AxisArrays v0.4.7 ⌅ [3da002f7] ColorTypes v0.11.5 ⌃ [c3611d14] ColorVectorSpace v0.10.0 [5ae59095] Colors v0.13.1 [34da2185] Compat v4.18.0 ⌅ [864edb3b] DataStructures v0.18.22 [ffbed154] DocStringExtensions v0.9.5 [8f5d6c58] EzXML v1.2.2 [5789e2e9] FileIO v1.17.0 [53c48c17] FixedPointNumbers v0.8.5 [2803e5a7] ImageAxes v0.6.12 [c817782e] ImageBase v0.1.7 [a09fc81d] ImageCore v0.10.5 [6218d12a] ImageMagick v1.4.2 [bc367c6b] ImageMetadata v0.9.10 [9b13fd28] IndirectArrays v1.0.0 [d25df0c9] Inflate v0.1.5 [8197267c] IntervalSets v0.7.11 [c8e1da08] IterTools v1.10.0 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v0.21.4 [1914dd2f] MacroTools v0.5.16 [dbb5928d] MappedArrays v0.4.2 [e94cdb99] MosaicViews v0.3.4 [2d0ec36b] OMETIFF v0.4.5 [6fe1bfb0] OffsetArrays v1.17.0 [bac558e1] OrderedCollections v1.8.1 [5432bcbf] PaddedViews v0.5.12 [69de0a69] Parsers v2.8.3 [eebad327] PkgVersion v0.3.3 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [92933f4c] ProgressMeter v1.10.4 [dca85d43] QuartzImageIO v0.7.5 [b3c3ace0] RangeArrays v0.3.2 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [fdea26ae] SIMD v3.7.1 [699a6c99] SimpleTraits v0.9.4 [cae243ae] StackViews v0.1.2 [10745b16] Statistics v1.11.1 [62fd8b95] TensorCore v0.1.1 ⌅ [731e570b] TiffImages v0.9.1 [1986cc42] Unitful v1.24.0 [61579ee1] Ghostscript_jll v9.55.0+4 [c73af94c] ImageMagick_jll v7.1.1048+0 [aacddb02] JpegTurbo_jll v3.1.1+0 ⌅ [88015f11] LERC_jll v3.0.0+1 [94ce4f54] Libiconv_jll v1.18.0+0 ⌅ [89763e89] Libtiff_jll v4.5.1+1 [d3a379c0] LittleCMS_jll v2.16.0+0 [643b3616] OpenJpeg_jll v2.5.4+0 [02c8fc9c] XML2_jll v2.14.4+0 [ffd25f8a] XZ_jll v5.8.1+0 [b53b4c65] libpng_jll v1.6.50+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.7.15 [4536629a] OpenBLAS_jll v0.3.29+0 [458c3c95] OpenSSL_jll v3.5.1+0 [efcefdf7] PCRE2_jll v10.45.0+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling packages... 91770.8 ms ✓ TiffImages Info Given OMETIFF was explicitly requested, output will be shown live  WARNING: Constructor for type "TiffFile" was extended in `OMETIFF` without explicit qualification or import.  NOTE: Assumed "TiffFile" refers to `TiffImages.TiffFile`. This behavior is deprecated and may differ in future versions.  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function TiffFile end`.  Hint: To silence the warning, qualify `TiffFile` as `TiffImages.TiffFile` in the method signature or explicitly `import TiffImages: TiffFile`. 22210.5 ms ✓ OMETIFF 2 dependencies successfully precompiled in 115 seconds. 76 already precompiled. 1 dependency had output during precompilation: ┌ OMETIFF │ [Output was shown above] └ Test Summary: | Pass Total Time TiffData Layouts | 13 13 19.2s Test Summary: | Pass Total Time Elapsed Time | 5 5 12.1s Cloning into 'exampletiffs'... 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Progress: 10%|████▏ | ETA: 0:00:26 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Test Summary: | Pass Total Time Axes Values | 2 2 28.1s Progress: 78%|███████████████████████████████▉ | ETA: 0:00:00 Progress: 100%|█████████████████████████████████████████| Time: 0:00:00 Test Summary: | Pass Total Time Single file OME-TIFFs | 31 31 21.5s Progress: 40%|████████████████▍ | ETA: 0:00:05 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Progress: 8%|███▍ | ETA: 0:00:11 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Test Summary: | Pass Total Time Multi file OME-TIFFs | 8 8 9.7s Test Summary: | Pass Total Time TIFF value verifications | 2 2 4.3s ┌ Warning: Directly accessing the ifds property is deprecated and will be removed in TiffImages v0.7.0+. Please use `ifds(img)` instead. │ caller = ip:0x0 └ @ Core :-1 Test Summary: | Pass Total Time Loader arguments | 5 5 6.7s Error encountered while load File{DataFormat{:OMETIFF}, String}("/home/pkgeval/.julia/packages/OMETIFF/Jsw4Z/exampletiffs/ometiff_testdata/nonometif.tif"). Fatal error: Error checks: Test Failed at /home/pkgeval/.julia/packages/OMETIFF/Jsw4Z/test/runtests.jl:218 Expression: load(File{format"OMETIFF"}(joinpath(testdata_dir, "nonometif.tif"))) Expected: CapturedException Thrown: MethodError MethodError: no method matching stacktrace(::Vector{Base.StackTraces.StackFrame}) The function `stacktrace` exists, but no method is defined for this combination of argument types. Closest candidates are: stacktrace(!Matched::Bool) @ Base stacktraces.jl:202 stacktrace() @ Base stacktraces.jl:202 stacktrace(!Matched::Vector{<:Union{Ptr{Nothing}, Base.InterpreterIP}}, !Matched::Bool) @ Base stacktraces.jl:189 ... Stacktrace: [1] CapturedException(ex::ErrorException, bt_raw::Vector{Base.StackTraces.StackFrame}) @ Base ./task.jl:17 [2] handle_error(e::ErrorException, q::Base.PkgId, bt::Vector{Union{Ptr{Nothing}, Base.InterpreterIP}}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/error_handling.jl:71 [3] handle_exceptions(exceptions::Vector{Tuple{Any, Union{Base.PkgId, Module}, Vector}}, action::String) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/error_handling.jl:66 [4] action(::Symbol, ::Vector{Union{Base.PkgId, Module}}, ::Formatted; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:228 [5] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:196 [inlined] [6] load(::Formatted; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:120 [7] load(::Formatted) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:116 [8] top-level scope @ ~/.julia/packages/OMETIFF/Jsw4Z/test/runtests.jl:217 [9] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1859 [inlined] [10] macro expansion @ ~/.julia/packages/OMETIFF/Jsw4Z/test/runtests.jl:218 [inlined] [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:839 [inlined] [12] macro expansion @ ~/.julia/packages/OMETIFF/Jsw4Z/test/runtests.jl:218 [inlined] Stacktrace: [1] top-level scope @ ~/.julia/packages/OMETIFF/Jsw4Z/test/runtests.jl:217 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1859 [inlined] [3] macro expansion @ ~/.julia/packages/OMETIFF/Jsw4Z/test/runtests.jl:218 [inlined] Test Summary: | Fail Total Time Error checks | 1 1 11.6s RNG of the outermost testset: Random.Xoshiro(0x9365e5148148f500, 0x5c97707c3701a5b2, 0xa1b8125890ad7374, 0x591d5f58e1c92ec8, 0x41922db226316ed2) ERROR: LoadError: Some tests did not pass: 0 passed, 1 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/OMETIFF/Jsw4Z/test/runtests.jl:216 Testing failed after 267.86s ERROR: LoadError: Package OMETIFF errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2695 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2544 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:538 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:515 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:168 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:157 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [9] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:155 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:311 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:320 [14] _start() @ Base ./client.jl:553 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 626.86s: package has test failures