Package evaluation of CastepReader on Julia 1.13.0-DEV.943 (cce193b1aa*) started at 2025-08-02T05:44:37.056 ################################################################################ # Set-up # Set-up completed after 0.23s ################################################################################ # Installation # Installing CastepReader... Resolving package versions... Installed MKL_jll ──────────── v2025.2.0+0 Installed IntelOpenMP_jll ──── v2025.2.0+0 Installed oneTBB_jll ───────── v2022.0.0+0 Installed UnitfulAtomic ────── v1.0.0 Installed AbstractFFTs ─────── v1.5.0 Installed OrderedCollections ─ v1.8.1 Installed FortranFiles ─────── v0.6.2 Installed FFTW_jll ─────────── v3.3.11+0 Installed JLLWrappers ──────── v1.7.1 Installed Reexport ─────────── v1.2.2 Installed Parameters ───────── v0.12.3 Installed FFTW ─────────────── v1.9.0 Installed Preferences ──────── v1.4.3 Installed Unitful ──────────── v1.24.0 Installed CastepReader ─────── v0.1.2 Installed UnPack ───────────── v1.0.2 Installing 2 artifacts Installed artifact oneTBB 435.6 KiB Installed artifact FFTW 2.2 MiB Updating `~/.julia/environments/v1.13/Project.toml` [fad133d4] + CastepReader v0.1.2 Updating `~/.julia/environments/v1.13/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [fad133d4] + CastepReader v0.1.2 [7a1cc6ca] + FFTW v1.9.0 [c58ffaec] + FortranFiles v0.6.2 [692b3bcd] + JLLWrappers v1.7.1 [bac558e1] + OrderedCollections v1.8.1 [d96e819e] + Parameters v0.12.3 [21216c6a] + Preferences v1.4.3 [189a3867] + Reexport v1.2.2 [3a884ed6] + UnPack v1.0.2 [1986cc42] + Unitful v1.24.0 [a7773ee8] + UnitfulAtomic v1.0.0 [f5851436] + FFTW_jll v3.3.11+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [856f044c] + MKL_jll v2025.2.0+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.7.15 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.5.1+0 [efcefdf7] + PCRE2_jll v10.45.0+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Installation completed after 7.11s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml` No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml` Precompiling package dependencies... Precompiling packages... 966.3 ms ✓ FortranFiles 886.7 ms ✓ OrderedCollections 570.3 ms ✓ Reexport 1102.7 ms ✓ AbstractFFTs 747.8 ms ✓ UnPack 26678.8 ms ✓ Unitful 1056.9 ms ✓ Preferences 3122.2 ms ✓ AbstractFFTs → AbstractFFTsTestExt 834.5 ms ✓ Parameters 1624.3 ms ✓ Unitful → PrintfExt 1013.5 ms ✓ JLLWrappers 8001.6 ms ✓ UnitfulAtomic 1342.7 ms ✓ FFTW_jll 4652.6 ms ✓ IntelOpenMP_jll 1262.5 ms ✓ oneTBB_jll 10621.0 ms ✓ MKL_jll ✗ FFTW ✗ CastepReader 16 dependencies successfully precompiled in 82 seconds. 30 already precompiled. 1 dependency had output during precompilation: ┌ MKL_jll │ Downloading artifact: IntelOpenMP └ ERROR: LoadError: The following 1 direct dependency failed to precompile: CastepReader Failed to precompile CastepReader [fad133d4-4adf-409a-947f-9114b6962100] to "/home/pkgeval/.julia/compiled/v1.13/CastepReader/jl_51i5nq" (ProcessExited(1)). ERROR: LoadError: TypeError: in ccall function name, expected Symbol, got a value of type Expr Stacktrace: [1] top-level scope @ ~/.julia/packages/FFTW/r6EbH/src/providers.jl:68 [2] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [3] top-level scope @ ~/.julia/packages/FFTW/r6EbH/src/FFTW.jl:17 [4] include(mod::Module, _path::String) @ Base ./Base.jl:311 [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3002 [6] top-level scope @ stdin:5 [7] eval(m::Module, e::Any) @ Core ./boot.jl:489 [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2848 [9] include_string @ ./loading.jl:2858 [inlined] [10] exec_options(opts::Base.JLOptions) @ Base ./client.jl:318 [11] _start() @ Base ./client.jl:553 in expression starting at /home/pkgeval/.julia/packages/FFTW/r6EbH/src/providers.jl:49 in expression starting at /home/pkgeval/.julia/packages/FFTW/r6EbH/src/FFTW.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile FFTW [7a1cc6ca-52ef-59f5-83cd-3a7055c09341] to "/home/pkgeval/.julia/compiled/v1.13/FFTW/jl_UdqWiA" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3289 [3] kwcall(::@NamedTuple{reasons::Dict{String, Int64}, loadable_exts::Nothing}, ::typeof(Base.compilecache), pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base ./loading.jl:3167 [4] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2654 [5] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [6] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [8] #invokelatest_gr#235 @ ./reflection.jl:1333 [inlined] [9] invokelatest_gr @ ./reflection.jl:1325 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3860 [11] maybe_cachefile_lock @ ./loading.jl:3857 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2640 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2468 [14] macro expansion @ ./loading.jl:2396 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2360 [17] require @ ./loading.jl:2336 [inlined] [18] eval_import_path @ ./module.jl:36 [inlined] [19] _eval_import(imported::Bool, to::Module, from::Nothing, paths::Expr) @ Base ./module.jl:111 [20] top-level scope @ ~/.julia/packages/CastepReader/EHnR4/src/wave.jl:6 [21] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [22] top-level scope @ ~/.julia/packages/CastepReader/EHnR4/src/CastepReader.jl:81 [23] include(mod::Module, _path::String) @ Base ./Base.jl:311 [24] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3002 [25] top-level scope @ stdin:5 [26] eval(m::Module, e::Any) @ Core ./boot.jl:489 [27] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2848 [28] include_string @ ./loading.jl:2858 [inlined] [29] exec_options(opts::Base.JLOptions) @ Base ./client.jl:318 [30] _start() @ Base ./client.jl:553 in expression starting at /home/pkgeval/.julia/packages/CastepReader/EHnR4/src/wave.jl:6 in expression starting at /home/pkgeval/.julia/packages/CastepReader/EHnR4/src/CastepReader.jl:2 in expression starting at stdin: in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 84.46s ################################################################################ # Loading # Loading CastepReader... Precompiling packages... ✗ FFTW Info Given CastepReader was explicitly requested, output will be shown live  ERROR: LoadError: TypeError: in ccall function name, expected Symbol, got a value of type Expr Stacktrace:  [1] top-level scope  @ ~/.julia/packages/FFTW/r6EbH/src/providers.jl:68  [2] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:312  [3] top-level scope  @ ~/.julia/packages/FFTW/r6EbH/src/FFTW.jl:17  [4] include(mod::Module, _path::String)  @ Base ./Base.jl:311  [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)  @ Base ./loading.jl:3002  [6] top-level scope  @ stdin:5  [7] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2848  [9] include_string  @ ./loading.jl:2858 [inlined]  [10] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:318  [11] _start()  @ Base ./client.jl:553 in expression starting at /home/pkgeval/.julia/packages/FFTW/r6EbH/src/providers.jl:49 in expression starting at /home/pkgeval/.julia/packages/FFTW/r6EbH/src/FFTW.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile FFTW [7a1cc6ca-52ef-59f5-83cd-3a7055c09341] to "/home/pkgeval/.julia/compiled/v1.13/FFTW/jl_bLtVG1" (ProcessExited(1)). Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)  @ Base ./loading.jl:3289  [3] kwcall(::@NamedTuple{reasons::Dict{String, Int64}, loadable_exts::Nothing}, ::typeof(Base.compilecache), pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool)  @ Base ./loading.jl:3167  [4] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()  @ Base ./loading.jl:2654  [5] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94  [6] #mkpidlock#7  @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined]  [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115  [8] #invokelatest_gr#235  @ ./reflection.jl:1333 [inlined]  [9] invokelatest_gr  @ ./reflection.jl:1325 [inlined]  [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)  @ Base ./loading.jl:3860  [11] maybe_cachefile_lock  @ ./loading.jl:3857 [inlined]  [12] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2640  [13] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2468  [14] macro expansion  @ ./loading.jl:2396 [inlined]  [15] macro expansion  @ ./lock.jl:376 [inlined]  [16] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2360  [17] require  @ ./loading.jl:2336 [inlined]  [18] eval_import_path  @ ./module.jl:36 [inlined]  [19] _eval_import(imported::Bool, to::Module, from::Nothing, paths::Expr)  @ Base ./module.jl:111  [20] top-level scope  @ ~/.julia/packages/CastepReader/EHnR4/src/wave.jl:6  [21] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:312  [22] top-level scope  @ ~/.julia/packages/CastepReader/EHnR4/src/CastepReader.jl:81  [23] include(mod::Module, _path::String)  @ Base ./Base.jl:311  [24] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3002  [25] top-level scope  @ stdin:5  [26] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [27] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2848  [28] include_string  @ ./loading.jl:2858 [inlined]  [29] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:318  [30] _start()  @ Base ./client.jl:553 in expression starting at /home/pkgeval/.julia/packages/CastepReader/EHnR4/src/wave.jl:6 in expression starting at /home/pkgeval/.julia/packages/CastepReader/EHnR4/src/CastepReader.jl:2 in expression starting at stdin:5 ✗ CastepReader 0 dependencies successfully precompiled in 13 seconds. 46 already precompiled. ERROR: The following 1 direct dependency failed to precompile: CastepReader Failed to precompile CastepReader [fad133d4-4adf-409a-947f-9114b6962100] to "/home/pkgeval/.julia/compiled/v1.13/CastepReader/jl_pWp1Tz" (ProcessExited(1)). ERROR: LoadError: TypeError: in ccall function name, expected Symbol, got a value of type Expr Stacktrace: [1] top-level scope @ ~/.julia/packages/FFTW/r6EbH/src/providers.jl:68 [2] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [3] top-level scope @ ~/.julia/packages/FFTW/r6EbH/src/FFTW.jl:17 [4] include(mod::Module, _path::String) @ Base ./Base.jl:311 [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3002 [6] top-level scope @ stdin:5 [7] eval(m::Module, e::Any) @ Core ./boot.jl:489 [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2848 [9] include_string @ ./loading.jl:2858 [inlined] [10] exec_options(opts::Base.JLOptions) @ Base ./client.jl:318 [11] _start() @ Base ./client.jl:553 in expression starting at /home/pkgeval/.julia/packages/FFTW/r6EbH/src/providers.jl:49 in expression starting at /home/pkgeval/.julia/packages/FFTW/r6EbH/src/FFTW.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile FFTW [7a1cc6ca-52ef-59f5-83cd-3a7055c09341] to "/home/pkgeval/.julia/compiled/v1.13/FFTW/jl_bLtVG1" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3289 [3] kwcall(::@NamedTuple{reasons::Dict{String, Int64}, loadable_exts::Nothing}, ::typeof(Base.compilecache), pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base ./loading.jl:3167 [4] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2654 [5] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [6] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [8] #invokelatest_gr#235 @ ./reflection.jl:1333 [inlined] [9] invokelatest_gr @ ./reflection.jl:1325 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3860 [11] maybe_cachefile_lock @ ./loading.jl:3857 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2640 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2468 [14] macro expansion @ ./loading.jl:2396 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2360 [17] require @ ./loading.jl:2336 [inlined] [18] eval_import_path @ ./module.jl:36 [inlined] [19] _eval_import(imported::Bool, to::Module, from::Nothing, paths::Expr) @ Base ./module.jl:111 [20] top-level scope @ ~/.julia/packages/CastepReader/EHnR4/src/wave.jl:6 [21] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [22] top-level scope @ ~/.julia/packages/CastepReader/EHnR4/src/CastepReader.jl:81 [23] include(mod::Module, _path::String) @ Base ./Base.jl:311 [24] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3002 [25] top-level scope @ stdin:5 [26] eval(m::Module, e::Any) @ Core ./boot.jl:489 [27] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2848 [28] include_string @ ./loading.jl:2858 [inlined] [29] exec_options(opts::Base.JLOptions) @ Base ./client.jl:318 [30] _start() @ Base ./client.jl:553 in expression starting at /home/pkgeval/.julia/packages/CastepReader/EHnR4/src/wave.jl:6 in expression starting at /home/pkgeval/.julia/packages/CastepReader/EHnR4/src/CastepReader.jl:2 in expression starting at stdin: Loading failed after 14.7s ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so -g1 --check-bounds=yes --inline=yes --pkgimages=existing -e 'using CastepReader'`, ProcessExited(1)) [1] Stacktrace: [1] pipeline_error @ ./process.jl:602 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:517 [3] run(::Cmd) @ Base ./process.jl:514 [4] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:193 [5] include(mod::Module, _path::String) @ Base ./Base.jl:311 [6] exec_options(opts::Base.JLOptions) @ Base ./client.jl:320 [7] _start() @ Base ./client.jl:553 in expression starting at /PkgEval.jl/scripts/evaluate.jl:184 PkgEval failed after 123.44s: package fails to precompile