Package evaluation of ADCME on Julia 1.13.0-DEV.943 (cce193b1aa*) started at 2025-08-02T08:46:03.320 ################################################################################ # Set-up # Set-up completed after 0.21s ################################################################################ # Installation # Installing ADCME... Resolving package versions... Installed MKL_jll ───────────── v2025.2.0+0 Installed oneTBB_jll ────────── v2022.0.0+0 Installed VersionParsing ────── v1.3.0 Installed libaec_jll ────────── v1.1.3+0 Installed CodecZlib ─────────── v0.7.8 Installed MPICH_jll ─────────── v4.3.1+0 Installed MacroTools ────────── v0.5.16 Installed TranscodingStreams ── v0.11.3 Installed IntelOpenMP_jll ───── v2025.2.0+0 Installed Conda ─────────────── v1.10.2 Installed MicrosoftMPI_jll ──── v10.1.4+3 Installed Compat ────────────── v4.18.0 Installed Statistics ────────── v1.11.1 Installed IrrationalConstants ─ v0.1.1 Installed PrecompileTools ───── v1.3.2 Installed ChainRulesCore ────── v1.25.2 Installed AbstractFFTs ──────── v1.5.0 Installed PyCall ────────────── v1.96.4 Installed OpenSpecFun_jll ───── v0.5.6+0 Installed OpenMPI_jll ───────── v5.0.8+0 Installed Requires ──────────── v1.3.1 Installed HDF5_jll ──────────── v1.14.6+0 Installed LogExpFunctions ───── v0.3.29 Installed BufferedStreams ───── v1.2.2 Installed Hwloc_jll ─────────── v2.12.1+0 Installed JSON ──────────────── v0.21.4 Installed CMake ─────────────── v1.2.0 Installed URIParser ─────────── v0.4.1 Installed Reexport ──────────── v1.2.2 Installed Parsers ───────────── v2.8.3 Installed SpecialFunctions ──── v1.8.8 Installed ADCME ─────────────── v0.7.3 Installed MPIPreferences ────── v0.1.11 Installed FFTW_jll ──────────── v3.3.11+0 Installed JLLWrappers ───────── v1.7.1 Installed FFTW ──────────────── v1.9.0 Installed Preferences ───────── v1.4.3 Installed BinDeps ───────────── v1.0.2 Installed DocStringExtensions ─ v0.9.5 Installed MPItrampoline_jll ─── v5.5.4+0 Installed MAT ───────────────── v0.10.7 Installed HDF5 ──────────────── v0.17.2 Installing 7 artifacts Installed artifact libaec 96.2 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact oneTBB 435.6 KiB Installed artifact FFTW 2.2 MiB Installed artifact Hwloc 3.5 MiB Installed artifact MPICH 3.3 MiB Installed artifact HDF5 5.7 MiB Updating `~/.julia/environments/v1.13/Project.toml` [07b341a0] + ADCME v0.7.3 Updating `~/.julia/environments/v1.13/Manifest.toml` [07b341a0] + ADCME v0.7.3 [621f4979] + AbstractFFTs v1.5.0 [9e28174c] + BinDeps v1.0.2 [e1450e63] + BufferedStreams v1.2.2 [631607c0] + CMake v1.2.0 [d360d2e6] + ChainRulesCore v1.25.2 [944b1d66] + CodecZlib v0.7.8 [34da2185] + Compat v4.18.0 [8f4d0f93] + Conda v1.10.2 [ffbed154] + DocStringExtensions v0.9.5 [7a1cc6ca] + FFTW v1.9.0 [f67ccb44] + HDF5 v0.17.2 ⌅ [92d709cd] + IrrationalConstants v0.1.1 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v0.21.4 [2ab3a3ac] + LogExpFunctions v0.3.29 [23992714] + MAT v0.10.7 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [69de0a69] + Parsers v2.8.3 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [438e738f] + PyCall v1.96.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 ⌅ [276daf66] + SpecialFunctions v1.8.8 [10745b16] + Statistics v1.11.1 [3bb67fe8] + TranscodingStreams v0.11.3 [30578b45] + URIParser v0.4.1 [81def892] + VersionParsing v1.3.0 [f5851436] + FFTW_jll v3.3.11+0 [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.1+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [856f044c] + MKL_jll v2025.2.0+0 [7cb0a576] + MPICH_jll v4.3.1+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.8+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [477f73a3] + libaec_jll v1.1.3+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.7.15 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.5.1+0 [efcefdf7] + PCRE2_jll v10.45.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Building Conda ─→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/b19db3927f0db4151cb86d073689f2428e524576/build.log` Building PyCall → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/9816a3826b0ebf49ab4926e2b18842ad8b5c8f04/build.log` Building CMake ─→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/50a8b41d2c562fccd9ab841085fc7d1e2706da82/build.log` Building ADCME ─→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/4ecfc24dbdf551f92b5de7ea2d99da3f7fde73c9/build.log` Installation completed after 1321.94s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml` No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml` Precompiling package dependencies... Precompiling packages... 4392.7 ms ✓ MacroTools 1206.1 ms ✓ TranscodingStreams 1000.7 ms ✓ BufferedStreams 1102.2 ms ✓ Statistics 704.1 ms ✓ Reexport 965.3 ms ✓ DocStringExtensions 882.6 ms ✓ VersionParsing 1501.5 ms ✓ IrrationalConstants 1004.5 ms ✓ AbstractFFTs 1111.0 ms ✓ Requires 1153.6 ms ✓ URIParser 1144.1 ms ✓ Preferences 1105.9 ms ✓ Compat 934.0 ms ✓ CodecZlib 1274.0 ms ✓ Statistics → SparseArraysExt 1389.4 ms ✓ LogExpFunctions 5538.1 ms ✓ BinDeps 1468.0 ms ✓ MPIPreferences 1144.4 ms ✓ JLLWrappers 893.1 ms ✓ PrecompileTools 825.7 ms ✓ Compat → CompatLinearAlgebraExt 787.8 ms ✓ CMake 4491.5 ms ✓ MPItrampoline_jll 1072.5 ms ✓ MicrosoftMPI_jll 1255.6 ms ✓ OpenSpecFun_jll 1250.8 ms ✓ libaec_jll 1301.0 ms ✓ FFTW_jll 4861.6 ms ✓ IntelOpenMP_jll 1355.6 ms ✓ Hwloc_jll 1342.9 ms ✓ oneTBB_jll 15625.2 ms ✓ Parsers 2516.3 ms ✓ ChainRulesCore 4265.6 ms ✓ OpenMPI_jll 5130.8 ms ✓ MPICH_jll 9930.6 ms ✓ MKL_jll 3835.1 ms ✓ JSON 1330.6 ms ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 987.9 ms ✓ AbstractFFTs → AbstractFFTsChainRulesCoreExt 2748.1 ms ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 4664.6 ms ✓ HDF5_jll ✗ FFTW 1960.3 ms ✓ Conda 7478.6 ms ✓ SpecialFunctions 10832.0 ms ✓ HDF5 17845.5 ms ✓ PyCall 7818.9 ms ✓ MAT 11994.8 ms ? ADCME 45 dependencies successfully precompiled in 161 seconds. 32 already precompiled. 1 dependencies failed but may be precompilable after restarting julia 2 dependencies had output during precompilation: ┌ ADCME │ WARNING: method definition for #newton_raphson#39 at /home/pkgeval/.julia/packages/ADCME/94vEM/src/optim.jl:462 declares type variable T but does not use it. │ WARNING: method definition for #newton_raphson_with_grad#49 at /home/pkgeval/.julia/packages/ADCME/94vEM/src/optim.jl:616 declares type variable T but does not use it. │ WARNING: method definition for NonlinearConstrainedProblem at /home/pkgeval/.julia/packages/ADCME/94vEM/src/optim.jl:690 declares type variable T but does not use it. │ WARNING: Method definition size(PyCall.PyObject) in module PyCall at /home/pkgeval/.julia/packages/PyCall/1gn3u/src/PyCall.jl:820 overwritten in module ADCME at /home/pkgeval/.julia/packages/ADCME/94vEM/src/variable.jl:214. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ MKL_jll │ Downloading artifact: IntelOpenMP └ Precompilation completed after 170.41s ################################################################################ # Loading # Loading ADCME... Precompiling packages... ✗ FFTW Info Given ADCME was explicitly requested, output will be shown live  WARNING: method definition for #newton_raphson#39 at /home/pkgeval/.julia/packages/ADCME/94vEM/src/optim.jl:462 declares type variable T but does not use it. WARNING: method definition for #newton_raphson_with_grad#49 at /home/pkgeval/.julia/packages/ADCME/94vEM/src/optim.jl:616 declares type variable T but does not use it. WARNING: method definition for NonlinearConstrainedProblem at /home/pkgeval/.julia/packages/ADCME/94vEM/src/optim.jl:690 declares type variable T but does not use it. WARNING: Method definition size(PyCall.PyObject) in module PyCall at /home/pkgeval/.julia/packages/PyCall/1gn3u/src/PyCall.jl:820 overwritten in module ADCME at /home/pkgeval/.julia/packages/ADCME/94vEM/src/variable.jl:214. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 11999.7 ms ? ADCME 0 dependencies successfully precompiled in 17 seconds. 77 already precompiled. 1 dependencies failed but may be precompilable after restarting julia 1 dependency had output during precompilation: ┌ ADCME │ [Output was shown above] └ WARNING: method definition for #newton_raphson#39 at /home/pkgeval/.julia/packages/ADCME/94vEM/src/optim.jl:462 declares type variable T but does not use it. WARNING: method definition for #newton_raphson_with_grad#49 at /home/pkgeval/.julia/packages/ADCME/94vEM/src/optim.jl:616 declares type variable T but does not use it. WARNING: method definition for NonlinearConstrainedProblem at /home/pkgeval/.julia/packages/ADCME/94vEM/src/optim.jl:690 declares type variable T but does not use it. WARNING: Method definition size(PyCall.PyObject) in module PyCall at /home/pkgeval/.julia/packages/PyCall/1gn3u/src/PyCall.jl:820 overwritten in module ADCME at /home/pkgeval/.julia/packages/ADCME/94vEM/src/variable.jl:214. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. WARNING: method definition for #newton_raphson#39 at /home/pkgeval/.julia/packages/ADCME/94vEM/src/optim.jl:462 declares type variable T but does not use it. WARNING: method definition for #newton_raphson_with_grad#49 at /home/pkgeval/.julia/packages/ADCME/94vEM/src/optim.jl:616 declares type variable T but does not use it. WARNING: method definition for NonlinearConstrainedProblem at /home/pkgeval/.julia/packages/ADCME/94vEM/src/optim.jl:690 declares type variable T but does not use it. Precompiling packages... Info Given FFTW was explicitly requested, output will be shown live  ERROR: LoadError: TypeError: in ccall function name, expected Symbol, got a value of type Expr Stacktrace:  [1] top-level scope  @ ~/.julia/packages/FFTW/r6EbH/src/providers.jl:68  [2] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:312  [3] top-level scope  @ ~/.julia/packages/FFTW/r6EbH/src/FFTW.jl:17  [4] include(mod::Module, _path::String)  @ Base ./Base.jl:311  [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3002  [6] top-level scope  @ stdin:5  [7] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2848  [9] include_string  @ ./loading.jl:2858 [inlined]  [10] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:318  [11] _start()  @ Base ./client.jl:553 in expression starting at /home/pkgeval/.julia/packages/FFTW/r6EbH/src/providers.jl:49 in expression starting at /home/pkgeval/.julia/packages/FFTW/r6EbH/src/FFTW.jl:1 in expression starting at stdin:5 ✗ FFTW 0 dependencies successfully precompiled in 8 seconds. 35 already precompiled. ERROR: LoadError: TypeError: in ccall function name, expected Symbol, got a value of type Expr Stacktrace: [1] top-level scope @ ~/.julia/packages/FFTW/r6EbH/src/providers.jl:68 [2] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [3] top-level scope @ ~/.julia/packages/FFTW/r6EbH/src/FFTW.jl:17 [4] include(mod::Module, _path::String) @ Base ./Base.jl:311 [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3002 [6] top-level scope @ stdin:5 [7] eval(m::Module, e::Any) @ Core ./boot.jl:489 [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2848 [9] include_string @ ./loading.jl:2858 [inlined] [10] exec_options(opts::Base.JLOptions) @ Base ./client.jl:318 [11] _start() @ Base ./client.jl:553 in expression starting at /home/pkgeval/.julia/packages/FFTW/r6EbH/src/providers.jl:49 in expression starting at /home/pkgeval/.julia/packages/FFTW/r6EbH/src/FFTW.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile FFTW [7a1cc6ca-52ef-59f5-83cd-3a7055c09341] to "/home/pkgeval/.julia/compiled/v1.13/FFTW/jl_UCw2gl" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3289 [3] kwcall(::@NamedTuple{reasons::Dict{String, Int64}, loadable_exts::Nothing}, ::typeof(Base.compilecache), pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base ./loading.jl:3167 [4] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2654 [5] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [6] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [8] #invokelatest_gr#235 @ ./reflection.jl:1333 [inlined] [9] invokelatest_gr @ ./reflection.jl:1325 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3860 [11] maybe_cachefile_lock @ ./loading.jl:3857 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2640 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2468 [14] macro expansion @ ./loading.jl:2396 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2360 [17] require @ ./loading.jl:2336 [inlined] [18] eval_import_path @ ./module.jl:36 [inlined] [19] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [20] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr}) @ Base ./module.jl:101 [21] top-level scope @ ~/.julia/packages/ADCME/94vEM/src/ops.jl:6 [22] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [23] top-level scope @ ~/.julia/packages/ADCME/94vEM/src/ADCME.jl:88 [24] include(mod::Module, _path::String) @ Base ./Base.jl:311 [25] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2693 [26] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2468 [27] macro expansion @ ./loading.jl:2396 [inlined] [28] macro expansion @ ./lock.jl:376 [inlined] [29] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2360 [30] require @ ./loading.jl:2336 [inlined] [31] eval_import_path @ ./module.jl:36 [inlined] [32] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [33] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [34] top-level scope @ none:1 [35] eval(m::Module, e::Any) @ Core ./boot.jl:489 [36] exec_options(opts::Base.JLOptions) @ Base ./client.jl:286 [37] _start() @ Base ./client.jl:553 in expression starting at /home/pkgeval/.julia/packages/ADCME/94vEM/src/ops.jl:6 in expression starting at /home/pkgeval/.julia/packages/ADCME/94vEM/src/ADCME.jl:3 Loading failed after 83.03s ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so -g1 --check-bounds=yes --inline=yes --pkgimages=existing -e 'using ADCME'`, ProcessExited(1)) [1] Stacktrace: [1] pipeline_error @ ./process.jl:602 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:517 [3] run(::Cmd) @ Base ./process.jl:514 [4] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:193 [5] include(mod::Module, _path::String) @ Base ./Base.jl:311 [6] exec_options(opts::Base.JLOptions) @ Base ./client.jl:320 [7] _start() @ Base ./client.jl:553 in expression starting at /PkgEval.jl/scripts/evaluate.jl:184 PkgEval failed after 1652.72s: illegal method overwrites during precompilation