Package evaluation to test OnlinePCA on Julia 1.14.0-DEV.2114 (cccbcd9611*) started at 2026-05-05T17:24:14.652 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 14.83s ################################################################################ # Installation # Installing OnlinePCA... Resolving package versions... Installed Rmath_jll ─────────────────── v0.5.1+0 Installed URIs ──────────────────────── v1.6.1 Installed CodecZstd ─────────────────── v0.8.7 Installed DataStructures ────────────── v0.19.4 Installed MacroTools ────────────────── v0.5.16 Installed FilePathsBase ─────────────── v0.9.24 Installed GLM ───────────────────────── v1.9.4 Installed FillArrays ────────────────── v1.16.0 Installed Mux ───────────────────────── v1.0.2 Installed s2n_tls_jll ───────────────── v1.7.2+0 Installed InlineStrings ─────────────── v1.4.5 Installed DelimitedFiles ────────────── v1.9.1 Installed libaec_jll ────────────────── v1.1.6+0 Installed HypergeometricFunctions ───── v0.3.28 Installed StatsModels ───────────────── v0.7.9 Installed OnlinePCA ─────────────────── v0.3.10 Installed CodecZlib ─────────────────── v0.7.8 Installed aws_c_cal_jll ─────────────── v0.9.13+0 Installed AliasTables ───────────────── v1.1.3 Installed aws_c_common_jll ──────────── v0.12.6+0 Installed StatsBase ─────────────────── v0.34.10 Installed MPICH_jll ─────────────────── v5.0.1+0 Installed CSV ───────────────────────── v0.10.16 Installed Observables ───────────────── v0.5.5 Installed ExceptionUnwrapping ───────── v0.1.11 Installed ConcurrentUtilities ───────── v2.5.1 Installed MicrosoftMPI_jll ──────────── v10.1.4+3 (no artifacts on this platform) Installed Compat ────────────────────── v4.18.1 Installed OrderedCollections ────────── v1.8.1 Installed ShiftedArrays ─────────────── v2.0.0 Installed TranscodingStreams ────────── v0.11.3 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed TensorCore ────────────────── v0.1.1 Installed DataAPI ───────────────────── v1.16.0 Installed InvertedIndices ───────────── v1.3.1 Installed Statistics ────────────────── v1.11.1 Installed Kaleido_jll ───────────────── v0.2.1+0 Installed WebSockets ────────────────── v1.6.0 Installed PrecompileTools ───────────── v1.3.3 Installed StatsAPI ──────────────────── v1.8.0 Installed DataValueInterfaces ───────── v1.0.0 Installed Hiccup ────────────────────── v0.2.2 Installed FunctionalCollections ─────── v0.5.0 Installed MPIABI_jll ────────────────── v0.1.5+0 Installed dlfcn_win32_jll ───────────── v1.4.2+0 (no artifacts on this platform) Installed Xorg_libpciaccess_jll ─────── v0.19.0+0 Installed Colors ────────────────────── v0.13.1 Installed MbedTLS ───────────────────── v1.1.10 Installed SentinelArrays ────────────── v1.4.9 Installed TextWrap ──────────────────── v1.0.2 Installed OpenSSL ───────────────────── v1.6.1 Installed ProgressMeter ─────────────── v1.11.0 Installed AssetRegistry ─────────────── v0.1.1 Installed mpif_jll ──────────────────── v0.1.7+0 Installed LoggingExtras ─────────────── v1.2.0 Installed IrrationalConstants ───────── v0.2.6 Installed QuadGK ────────────────────── v2.11.3 Installed Widgets ───────────────────── v0.6.7 Installed ColorVectorSpace ──────────── v0.11.0 Installed ColorTypes ────────────────── v0.12.1 Installed StringManipulation ────────── v0.4.4 Installed aws_c_s3_jll ──────────────── v0.11.5+0 Installed Requires ──────────────────── v1.3.1 Installed Pidfile ───────────────────── v1.3.0 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed ArgParse ──────────────────── v1.2.0 Installed LogExpFunctions ───────────── v0.3.29 Installed HTTP ──────────────────────── v1.11.0 Installed HDF5_jll ──────────────────── v2.1.2+0 Installed aws_c_io_jll ──────────────── v0.26.3+0 Installed BitFlags ──────────────────── v0.1.9 Installed JSON ──────────────────────── v0.21.4 Installed OpenMPI_jll ───────────────── v5.0.11+0 Installed Hwloc_jll ─────────────────── v2.13.0+1 Installed Parsers ───────────────────── v2.8.4 Installed Rmath ─────────────────────── v0.9.0 Installed MatrixMarket ──────────────── v0.5.2 Installed PrettyTables ──────────────── v3.3.2 Installed Parameters ────────────────── v0.12.3 Installed Distributions ─────────────── v0.25.125 Installed aws_c_sdkutils_jll ────────── v0.2.4+1 Installed PlotlyKaleido ─────────────── v2.3.1 Installed aws_checksums_jll ─────────── v0.2.10+0 Installed Tables ────────────────────── v1.12.1 Installed StatsFuns ─────────────────── v1.5.2 Installed WebIO ─────────────────────── v0.8.21 Installed PtrArrays ─────────────────── v1.4.0 Installed DataFrames ────────────────── v1.8.2 Installed Reexport ──────────────────── v1.2.2 Installed SpecialFunctions ──────────── v2.7.2 Installed Blink ─────────────────────── v0.12.9 Installed SimpleBufferStream ────────── v1.2.0 Installed PlotlyBase ────────────────── v0.8.23 Installed XML2_jll ──────────────────── v2.13.9+0 Installed FixedPointNumbers ─────────── v0.8.5 Installed Missings ──────────────────── v1.2.0 Installed MPIPreferences ────────────── v0.1.12 Installed Preferences ───────────────── v1.5.2 Installed PooledArrays ──────────────── v1.4.3 Installed JLLWrappers ───────────────── v1.7.1 Installed JSExpr ────────────────────── v0.5.4 Installed TableTraits ───────────────── v1.0.1 Installed aws_c_http_jll ────────────── v0.10.13+0 Installed WeakRefStrings ────────────── v1.4.3 Installed Libiconv_jll ──────────────── v1.18.0+0 Installed LaTeXStrings ──────────────── v1.4.0 Installed Mustache ──────────────────── v1.0.21 Installed MbedTLS_jll ───────────────── v2.28.1010+0 Installed SortingAlgorithms ─────────── v1.2.2 Installed PDMats ────────────────────── v0.11.37 Installed Crayons ───────────────────── v4.1.1 Installed MPItrampoline_jll ─────────── v5.5.6+0 Installed aws_c_compression_jll ─────── v0.3.2+0 Installed Lazy ──────────────────────── v0.15.1 Installed UnPack ────────────────────── v1.0.2 Installed WorkerUtilities ───────────── v1.6.1 Installed HDF5 ──────────────────────── v0.17.3 Installed aws_c_auth_jll ────────────── v0.9.6+0 Installed DocStringExtensions ───────── v0.9.5 Installed ColorSchemes ──────────────── v3.31.0 Installed PlotlyJS ──────────────────── v0.18.18 Installing 28 artifacts Installed artifact mathjax 18.7 KiB Installed artifact aws_c_sdkutils 54.9 KiB Installed artifact aws_c_s3 143.0 KiB Installed artifact plotly-base-artifacts 430.0 KiB Installed artifact aws_c_common 285.2 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact aws_c_compression 13.4 KiB Installed artifact Rmath 121.9 KiB Installed artifact s2n_tls 1.8 MiB Installed artifact aws_c_cal 1.2 MiB Installed artifact XML2 2.5 MiB Installed artifact libaec 50.0 KiB Installed artifact aws_c_http 387.4 KiB Installed artifact Xorg_libpciaccess 26.2 KiB Installed artifact MbedTLS 2.2 MiB Installed artifact aws_c_auth 130.3 KiB Installed artifact Hwloc 3.5 MiB Installed artifact plotly 2.3 MiB Installed artifact aws_checksums 87.0 KiB Installed artifact aws_c_io 181.7 KiB Installed artifact plotly-artifacts 1.7 MiB Installed artifact web 215.6 KiB Installed artifact Libiconv 1.9 MiB Installed artifact HDF5 6.1 MiB Installed artifact MPICH 8.8 MiB Installed artifact testfiles 6.2 MiB Installed artifact Kaleido 75.3 MiB Installed artifact electronjs_app 79.1 MiB Updating `~/.julia/environments/v1.14/Project.toml` [975b03d1] + OnlinePCA v0.3.10 Updating `~/.julia/environments/v1.14/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [c7e460c6] + ArgParse v1.2.0 [bf4720bc] + AssetRegistry v0.1.1 [d1d4a3ce] + BitFlags v0.1.9 [ad839575] + Blink v0.12.9 [336ed68f] + CSV v0.10.16 [944b1d66] + CodecZlib v0.7.8 [6b39b394] + CodecZstd v0.8.7 [35d6a980] + ColorSchemes v3.31.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [34da2185] + Compat v4.18.1 [f0e56b4a] + ConcurrentUtilities v2.5.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.2 [864edb3b] + DataStructures v0.19.4 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [31c24e10] + Distributions v0.25.125 [ffbed154] + DocStringExtensions v0.9.5 [460bff9d] + ExceptionUnwrapping v0.1.11 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.16.0 [53c48c17] + FixedPointNumbers v0.8.5 [de31a74c] + FunctionalCollections v0.5.0 [38e38edf] + GLM v1.9.4 [f67ccb44] + HDF5 v0.17.3 [cd3eb016] + HTTP v1.11.0 [9fb69e20] + Hiccup v0.2.2 [34004b35] + HypergeometricFunctions v0.3.28 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [97c1335a] + JSExpr v0.5.4 ⌅ [682c06a0] + JSON v0.21.4 [b964fa9f] + LaTeXStrings v1.4.0 [50d2b5c4] + Lazy v0.15.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [3da0fdf6] + MPIPreferences v0.1.12 [1914dd2f] + MacroTools v0.5.16 [4d4711f2] + MatrixMarket v0.5.2 [739be429] + MbedTLS v1.1.10 [e1d29d7a] + Missings v1.2.0 [ffc61752] + Mustache v1.0.21 [a975b10e] + Mux v1.0.2 [510215fc] + Observables v0.5.5 [975b03d1] + OnlinePCA v0.3.10 [4d8831e6] + OpenSSL v1.6.1 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.37 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.4 [fa939f87] + Pidfile v1.3.0 [a03496cd] + PlotlyBase v0.8.23 [f0f68f2c] + PlotlyJS v0.18.18 [f2990250] + PlotlyKaleido v2.3.1 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.2 [08abe8d2] + PrettyTables v3.3.2 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.3 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [91c51154] + SentinelArrays v1.4.9 [1277b4bf] + ShiftedArrays v2.0.0 [777ac1f9] + SimpleBufferStream v1.2.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.7.2 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [4c63d2b9] + StatsFuns v1.5.2 [3eaba693] + StatsModels v0.7.9 [892a3eda] + StringManipulation v0.4.4 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [62fd8b95] + TensorCore v0.1.1 [b718987f] + TextWrap v1.0.2 [3bb67fe8] + TranscodingStreams v0.11.3 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [ea10d353] + WeakRefStrings v1.4.3 [0f1e0344] + WebIO v0.8.21 [104b5d7c] + WebSockets v1.6.0 [cc8bc4a8] + Widgets v0.6.7 [76eceee3] + WorkerUtilities v1.6.1 [0234f1f7] + HDF5_jll v2.1.2+0 [e33a78d0] + Hwloc_jll v2.13.0+1 [f7e6163d] + Kaleido_jll v0.2.1+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [b5ada748] + MPIABI_jll v0.1.5+0 [7cb0a576] + MPICH_jll v5.0.1+0 [f1f71cc9] + MPItrampoline_jll v5.5.6+0 [c8ffd9c3] + MbedTLS_jll v2.28.1010+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.11+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.19.0+0 ⌅ [2b3700d1] + aws_c_auth_jll v0.9.6+0 [70f11efc] + aws_c_cal_jll v0.9.13+0 [73048d1d] + aws_c_common_jll v0.12.6+0 [73a04cd5] + aws_c_compression_jll v0.3.2+0 [3254fc65] + aws_c_http_jll v0.10.13+0 [13c41daa] + aws_c_io_jll v0.26.3+0 ⌅ [bd1f34fb] + aws_c_s3_jll v0.11.5+0 [1282aa60] + aws_c_sdkutils_jll v0.2.4+1 [b2a88e68] + aws_checksums_jll v0.2.10+0 [c4b69c83] + dlfcn_win32_jll v1.4.2+0 [477f73a3] + libaec_jll v1.1.6+0 [9aeb927a] + mpif_jll v0.1.7+0 [cddc5d3d] + s2n_tls_jll v1.7.2+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.1+0 [deac9b47] + LibCURL_jll v8.19.0+0 [e37daf67] + LibGit2_jll v1.9.2+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2026.3.19 [4536629a] + OpenBLAS_jll v0.3.33+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.6+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.69.0+0 [3f19e933] + p7zip_jll v17.8.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Building WebIO ───→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/0eef0765186f7452e52236fa42ca8c9b3c11c6e3/build.log` Building PlotlyJS → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/4bf6c08295346efba58bb2d5f8c52984efed7f27/build.log` Installation completed after 95.04s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling project... 4.9 s ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling project... 4.2 s ✓ MacroTools 1.6 s ✓ InlineStrings 0.8 s ✓ Reexport 0.8 s ✓ TensorCore 2.0 s ✓ IrrationalConstants 0.8 s ✓ DataValueInterfaces 0.9 s ✓ StatsAPI 1.1 s ✓ Observables 1.4 s ✓ TranscodingStreams 0.9 s ✓ TextWrap 0.9 s ✓ LaTeXStrings 1.3 s ✓ Statistics 0.8 s ✓ PtrArrays 0.8 s ✓ SimpleBufferStream 0.9 s ✓ DataAPI 1.3 s ✓ URIs 0.9 s ✓ InvertedIndices 0.9 s ✓ BitFlags 0.9 s ✓ ShiftedArrays 1.0 s ✓ WorkerUtilities 1.8 s ✓ FillArrays 0.7 s ✓ UnPack 1.2 s ✓ OrderedCollections 1.0 s ✓ DocStringExtensions 0.8 s ✓ IteratorInterfaceExtensions 1.7 s ✓ Crayons 0.9 s ✓ DelimitedFiles 1.0 s ✓ Requires 1.3 s ✓ ConcurrentUtilities 2.4 s ✓ ProgressMeter 2.5 s ✓ SentinelArrays 1.4 s ✓ LoggingExtras 1.9 s ✓ PDMats 1.2 s ✓ Compat 1.5 s ✓ Preferences 1.1 s ✓ Pidfile 1.8 s ✓ ExceptionUnwrapping 1.3 s ✓ FunctionalCollections 5.7 s ✓ Lazy 1.1 s ✓ Hiccup 1.5 s ✓ CodecZstd 0.9 s ✓ CodecZlib 1.5 s ✓ ArgParse 1.5 s ✓ Statistics → SparseArraysExt 3.9 s ✓ FixedPointNumbers 0.9 s ✓ AliasTables 1.0 s ✓ Missings 1.0 s ✓ PooledArrays 4.3 s ✓ OpenSSL 2.0 s ✓ FillArrays → FillArraysSparseArraysExt 1.1 s ✓ FillArrays → FillArraysStatisticsExt 1.0 s ✓ Parameters 3.6 s ✓ DataStructures 1.4 s ✓ LogExpFunctions 0.9 s ✓ TableTraits 1.6 s ✓ FillArrays → FillArraysPDMatsExt 0.8 s ✓ Compat → CompatLinearAlgebraExt 1.2 s ✓ PrecompileTools 1.6 s ✓ JLLWrappers 2.2 s ✓ MPIPreferences 1.5 s ✓ MatrixMarket 2.7 s ✓ ColorTypes 1.3 s ✓ SortingAlgorithms 2.4 s ✓ QuadGK 1.8 s ✓ Tables 2.3 s ✓ FilePathsBase 3.7 s ✓ StringManipulation 16.8 s ✓ Parsers 2.3 s ✓ Kaleido_jll 2.3 s ✓ Rmath_jll 1.7 s ✓ MicrosoftMPI_jll 2.1 s ✓ OpenSpecFun_jll 2.3 s ✓ aws_c_common_jll 1.6 s ✓ dlfcn_win32_jll 2.2 s ✓ libaec_jll 2.1 s ✓ Xorg_libpciaccess_jll 2.1 s ✓ Libiconv_jll 2.0 s ✓ MbedTLS_jll 2.2 s ✓ s2n_tls_jll 5.1 s ✓ MPItrampoline_jll 1.3 s ✓ ColorTypes → StyledStringsExt 8.2 s ✓ Colors 3.9 s ✓ ColorVectorSpace 4.8 s ✓ StatsBase 1.4 s ✓ Mustache 3.2 s ✓ FilePathsBase → FilePathsBaseTestExt 1.3 s ✓ FilePathsBase → FilePathsBaseMmapExt 41.7 s ✓ PrettyTables 4.0 s ✓ JSON 1.3 s ✓ InlineStrings → ParsersExt 2.1 s ✓ Rmath 5.4 s ✓ SpecialFunctions 2.2 s ✓ aws_c_cal_jll 2.2 s ✓ aws_c_sdkutils_jll 2.1 s ✓ aws_checksums_jll 2.3 s ✓ aws_c_compression_jll 2.5 s ✓ XML2_jll 2.4 s ✓ MbedTLS 2.0 s ✓ Widgets 9.4 s ✓ ColorSchemes 1.8 s ✓ PDMats → StatsBaseExt 82.4 s ✓ DataFrames 1.5 s ✓ AssetRegistry 1.9 s ✓ PlotlyKaleido 3.4 s ✓ WeakRefStrings 2.8 s ✓ HypergeometricFunctions 1.8 s ✓ ColorVectorSpace → SpecialFunctionsExt 2.3 s ✓ aws_c_io_jll 2.4 s ✓ Hwloc_jll 25.3 s ✓ HTTP 14.4 s ✓ PlotlyBase 25.7 s ✓ CSV 3.1 s ✓ StatsFuns 2.3 s ✓ aws_c_http_jll 2.3 s ✓ MPICH_jll 4.9 s ✓ OpenMPI_jll 5.0 s ✓ MPIABI_jll WARNING: Imported binding Logging.termlength was undeclared at import time during import to WebSockets. WARNING: Imported binding Logging.showvalue was undeclared at import time during import to WebSockets. 4.5 s ✓ WebSockets 8.9 s ✓ Mux 15.4 s ✓ PlotlyBase → DataFramesExt 5.5 s ✓ StatsModels 9.9 s ✓ Distributions 2.0 s ✓ aws_c_auth_jll 4.9 s ✓ mpif_jll 9.4 s ✓ WebIO 6.1 s ✓ GLM 4.2 s ✓ Distributions → DistributionsTestExt 10.5 s ✓ PlotlyBase → DistributionsExt 2.5 s ✓ aws_c_s3_jll 8.2 s ✓ JSExpr 2.7 s ✓ HDF5_jll 14.0 s ✓ Blink 12.6 s ✓ HDF5 18.8 s ✓ PlotlyJS 14.5 s ✓ PlotlyJS → CSVExt 21.1 s ✓ PlotlyJS → DataFramesExt 14.0 s ✓ OnlinePCA 137 dependencies successfully precompiled in 627 seconds. 40 already precompiled. 1 dependency had output during precompilation: ┌ WebSockets │ WARNING: Imported binding Logging.termlength was undeclared at import time during import to WebSockets. │ WARNING: Imported binding Logging.showvalue was undeclared at import time during import to WebSockets. └ Precompilation completed after 661.85s ################################################################################ # Testing # Testing OnlinePCA Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Updating `/tmp/jl_d7t78x/Project.toml` [31c24e10] ↑ Distributions v0.25.111 ⇒ v0.25.125 [1a297f60] ↑ FillArrays v1.12.0 ⇒ v1.16.0 [975b03d1] + OnlinePCA v0.3.10 [10745b16] ↑ Statistics v1.10.0 ⇒ v1.11.1 [37e2e46d] ~ LinearAlgebra ⇒ v1.13.0 [2f01184e] ↑ SparseArrays v1.10.0 ⇒ v1.13.0 [8dfed614] ~ Test ⇒ v1.11.0 Updating `/tmp/jl_d7t78x/Manifest.toml` [bf4720bc] + AssetRegistry v0.1.1 [d1d4a3ce] + BitFlags v0.1.9 [ad839575] + Blink v0.12.9 [336ed68f] + CSV v0.10.16 [944b1d66] ↑ CodecZlib v0.7.6 ⇒ v0.7.8 [6b39b394] + CodecZstd v0.8.7 [35d6a980] + ColorSchemes v3.31.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [34da2185] ↑ Compat v4.16.0 ⇒ v4.18.1 [f0e56b4a] + ConcurrentUtilities v2.5.1 [a8cc5b0e] + Crayons v4.1.1 [a93c6f00] + DataFrames v1.8.2 [864edb3b] ↑ DataStructures v0.18.20 ⇒ v0.19.4 [e2d170a0] + DataValueInterfaces v1.0.0 [31c24e10] ↑ Distributions v0.25.111 ⇒ v0.25.125 [ffbed154] ↑ DocStringExtensions v0.9.3 ⇒ v0.9.5 [460bff9d] + ExceptionUnwrapping v0.1.11 [48062228] + FilePathsBase v0.9.24 [1a297f60] ↑ FillArrays v1.12.0 ⇒ v1.16.0 [53c48c17] + FixedPointNumbers v0.8.5 [de31a74c] + FunctionalCollections v0.5.0 [38e38edf] + GLM v1.9.4 [f67ccb44] + HDF5 v0.17.3 [cd3eb016] + HTTP v1.11.0 [9fb69e20] + Hiccup v0.2.2 [34004b35] ↑ HypergeometricFunctions v0.3.24 ⇒ v0.3.28 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] ↑ IrrationalConstants v0.2.2 ⇒ v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] ↑ JLLWrappers v1.5.0 ⇒ v1.7.1 [97c1335a] + JSExpr v0.5.4 ⌅ [682c06a0] + JSON v0.21.4 [b964fa9f] + LaTeXStrings v1.4.0 [50d2b5c4] + Lazy v0.15.1 [2ab3a3ac] ↑ LogExpFunctions v0.3.28 ⇒ v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [3da0fdf6] + MPIPreferences v0.1.12 [1914dd2f] + MacroTools v0.5.16 [739be429] + MbedTLS v1.1.10 [ffc61752] + Mustache v1.0.21 [a975b10e] + Mux v1.0.2 [510215fc] + Observables v0.5.5 [975b03d1] + OnlinePCA v0.3.10 [4d8831e6] + OpenSSL v1.6.1 [bac558e1] ↑ OrderedCollections v1.6.3 ⇒ v1.8.1 [90014a1f] ↑ PDMats v0.11.31 ⇒ v0.11.37 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.4 [fa939f87] + Pidfile v1.3.0 [a03496cd] + PlotlyBase v0.8.23 [f0f68f2c] + PlotlyJS v0.18.18 [f2990250] + PlotlyKaleido v2.3.1 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] ↑ Preferences v1.4.3 ⇒ v1.5.2 [08abe8d2] + PrettyTables v3.3.2 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] ↑ PtrArrays v1.2.0 ⇒ v1.4.0 [1fd47b50] ↑ QuadGK v2.10.1 ⇒ v2.11.3 [ae029012] + Requires v1.3.1 [79098fc4] ↑ Rmath v0.7.1 ⇒ v0.9.0 [91c51154] + SentinelArrays v1.4.9 [1277b4bf] + ShiftedArrays v2.0.0 [777ac1f9] + SimpleBufferStream v1.2.0 [a2af1166] ↑ SortingAlgorithms v1.2.1 ⇒ v1.2.2 [276daf66] ↑ SpecialFunctions v2.4.0 ⇒ v2.7.2 [10745b16] ↑ Statistics v1.10.0 ⇒ v1.11.1 [82ae8749] ↑ StatsAPI v1.7.0 ⇒ v1.8.0 [2913bbd2] ↑ StatsBase v0.34.3 ⇒ v0.34.10 [4c63d2b9] ↑ StatsFuns v1.3.1 ⇒ v1.5.2 [3eaba693] + StatsModels v0.7.9 [892a3eda] + StringManipulation v0.4.4 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [62fd8b95] + TensorCore v0.1.1 [3bb67fe8] ↑ TranscodingStreams v0.11.2 ⇒ v0.11.3 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [ea10d353] + WeakRefStrings v1.4.3 [0f1e0344] + WebIO v0.8.21 [104b5d7c] + WebSockets v1.6.0 [cc8bc4a8] + Widgets v0.6.7 [76eceee3] + WorkerUtilities v1.6.1 [0234f1f7] + HDF5_jll v2.1.2+0 [e33a78d0] + Hwloc_jll v2.13.0+1 [f7e6163d] + Kaleido_jll v0.2.1+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [b5ada748] + MPIABI_jll v0.1.5+0 [7cb0a576] + MPICH_jll v5.0.1+0 [f1f71cc9] + MPItrampoline_jll v5.5.6+0 [c8ffd9c3] ↑ MbedTLS_jll v2.28.2+1 ⇒ v2.28.1010+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.11+0 [efe28fd5] ↑ OpenSpecFun_jll v0.5.5+0 ⇒ v0.5.6+0 [f50d1b31] ↑ Rmath_jll v0.4.3+0 ⇒ v0.5.1+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.19.0+0 ⌅ [2b3700d1] + aws_c_auth_jll v0.9.6+0 [70f11efc] + aws_c_cal_jll v0.9.13+0 [73048d1d] + aws_c_common_jll v0.12.6+0 [73a04cd5] + aws_c_compression_jll v0.3.2+0 [3254fc65] + aws_c_http_jll v0.10.13+0 [13c41daa] + aws_c_io_jll v0.26.3+0 ⌅ [bd1f34fb] + aws_c_s3_jll v0.11.5+0 [1282aa60] + aws_c_sdkutils_jll v0.2.4+1 [b2a88e68] + aws_checksums_jll v0.2.10+0 [c4b69c83] + dlfcn_win32_jll v1.4.2+0 [477f73a3] + libaec_jll v1.1.6+0 [9aeb927a] + mpif_jll v0.1.7+0 [cddc5d3d] + s2n_tls_jll v1.7.2+0 [0dad84c5] ↑ ArgTools v1.1.1 ⇒ v1.1.2 [56f22d72] ~ Artifacts ⇒ v1.11.0 [2a0f44e3] ~ Base64 ⇒ v1.11.0 [ade2ca70] ~ Dates ⇒ v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] ↑ Downloads v1.6.0 ⇒ v1.7.0 [7b1f6079] ~ FileWatching ⇒ v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] ~ InteractiveUtils ⇒ v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] ↑ LibCURL v0.6.4 ⇒ v1.0.0 [76f85450] ~ LibGit2 ⇒ v1.11.0 [8f399da3] ~ Libdl ⇒ v1.11.0 [37e2e46d] ~ LinearAlgebra ⇒ v1.13.0 [56ddb016] ~ Logging ⇒ v1.11.0 [d6f4376e] ~ Markdown ⇒ v1.11.0 [a63ad114] ~ Mmap ⇒ v1.11.0 [ca575930] ↑ NetworkOptions v1.2.0 ⇒ v1.3.0 [44cfe95a] ↑ Pkg v1.10.0 ⇒ v1.14.0 [de0858da] ~ Printf ⇒ v1.11.0 [3fa0cd96] ~ REPL ⇒ v1.11.0 [9a3f8284] ~ Random ⇒ v1.11.0 [ea8e919c] ↑ SHA v0.7.0 ⇒ v1.0.0 [9e88b42a] ~ Serialization ⇒ v1.11.0 [6462fe0b] ~ Sockets ⇒ v1.11.0 [2f01184e] ↑ SparseArrays v1.10.0 ⇒ v1.13.0 [f489334b] + StyledStrings v1.13.0 [8dfed614] ~ Test ⇒ v1.11.0 [cf7118a7] ~ UUIDs ⇒ v1.11.0 [4ec0a83e] ~ Unicode ⇒ v1.11.0 [e66e0078] ↑ CompilerSupportLibraries_jll v1.1.1+0 ⇒ v1.5.1+0 [deac9b47] ↑ LibCURL_jll v8.4.0+0 ⇒ v8.19.0+0 [e37daf67] ↑ LibGit2_jll v1.6.4+0 ⇒ v1.9.2+0 [29816b5a] ↑ LibSSH2_jll v1.11.0+1 ⇒ v1.11.3+1 [14a3606d] ↑ MozillaCACerts_jll v2023.1.10 ⇒ v2026.3.19 [4536629a] ↑ OpenBLAS_jll v0.3.23+4 ⇒ v0.3.33+0 [05823500] ↑ OpenLibm_jll v0.8.1+2 ⇒ v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.6+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] ↑ SuiteSparse_jll v7.2.1+1 ⇒ v7.10.1+0 [83775a58] ↑ Zlib_jll v1.2.13+1 ⇒ v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] ↑ libblastrampoline_jll v5.8.0+1 ⇒ v5.15.0+0 [8e850ede] ↑ nghttp2_jll v1.52.0+1 ⇒ v1.69.0+0 [3f19e933] ↑ p7zip_jll v17.4.0+2 ⇒ v17.8.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_d7t78x/Project.toml` [c7e460c6] ArgParse v1.2.0 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.125 [1a297f60] FillArrays v1.16.0 [4d4711f2] MatrixMarket v0.5.2 [975b03d1] OnlinePCA v0.3.10 [10745b16] Statistics v1.11.1 [37e2e46d] LinearAlgebra v1.13.0 [2f01184e] SparseArrays v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_d7t78x/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [c7e460c6] ArgParse v1.2.0 [bf4720bc] AssetRegistry v0.1.1 [d1d4a3ce] BitFlags v0.1.9 [ad839575] Blink v0.12.9 [336ed68f] CSV v0.10.16 [944b1d66] CodecZlib v0.7.8 [6b39b394] CodecZstd v0.8.7 [35d6a980] ColorSchemes v3.31.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [34da2185] Compat v4.18.1 [f0e56b4a] ConcurrentUtilities v2.5.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.2 [864edb3b] DataStructures v0.19.4 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.125 [ffbed154] DocStringExtensions v0.9.5 [460bff9d] ExceptionUnwrapping v0.1.11 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.16.0 [53c48c17] FixedPointNumbers v0.8.5 [de31a74c] FunctionalCollections v0.5.0 [38e38edf] GLM v1.9.4 [f67ccb44] HDF5 v0.17.3 [cd3eb016] HTTP v1.11.0 [9fb69e20] Hiccup v0.2.2 [34004b35] HypergeometricFunctions v0.3.28 [842dd82b] InlineStrings v1.4.5 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [97c1335a] JSExpr v0.5.4 ⌅ [682c06a0] JSON v0.21.4 [b964fa9f] LaTeXStrings v1.4.0 [50d2b5c4] Lazy v0.15.1 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.2.0 [3da0fdf6] MPIPreferences v0.1.12 [1914dd2f] MacroTools v0.5.16 [4d4711f2] MatrixMarket v0.5.2 [739be429] MbedTLS v1.1.10 [e1d29d7a] Missings v1.2.0 [ffc61752] Mustache v1.0.21 [a975b10e] Mux v1.0.2 [510215fc] Observables v0.5.5 [975b03d1] OnlinePCA v0.3.10 [4d8831e6] OpenSSL v1.6.1 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.37 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.4 [fa939f87] Pidfile v1.3.0 [a03496cd] PlotlyBase v0.8.23 [f0f68f2c] PlotlyJS v0.18.18 [f2990250] PlotlyKaleido v2.3.1 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.2 [08abe8d2] PrettyTables v3.3.2 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.4.0 [1fd47b50] QuadGK v2.11.3 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [91c51154] SentinelArrays v1.4.9 [1277b4bf] ShiftedArrays v2.0.0 [777ac1f9] SimpleBufferStream v1.2.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.7.2 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.10 [4c63d2b9] StatsFuns v1.5.2 [3eaba693] StatsModels v0.7.9 [892a3eda] StringManipulation v0.4.4 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [b718987f] TextWrap v1.0.2 [3bb67fe8] TranscodingStreams v0.11.3 [5c2747f8] URIs v1.6.1 [3a884ed6] UnPack v1.0.2 [ea10d353] WeakRefStrings v1.4.3 [0f1e0344] WebIO v0.8.21 [104b5d7c] WebSockets v1.6.0 [cc8bc4a8] Widgets v0.6.7 [76eceee3] WorkerUtilities v1.6.1 [0234f1f7] HDF5_jll v2.1.2+0 [e33a78d0] Hwloc_jll v2.13.0+1 [f7e6163d] Kaleido_jll v0.2.1+0 [94ce4f54] Libiconv_jll v1.18.0+0 [b5ada748] MPIABI_jll v0.1.5+0 [7cb0a576] MPICH_jll v5.0.1+0 [f1f71cc9] MPItrampoline_jll v5.5.6+0 [c8ffd9c3] MbedTLS_jll v2.28.1010+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [fe0851c0] OpenMPI_jll v5.0.11+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [a65dc6b1] Xorg_libpciaccess_jll v0.19.0+0 ⌅ [2b3700d1] aws_c_auth_jll v0.9.6+0 [70f11efc] aws_c_cal_jll v0.9.13+0 [73048d1d] aws_c_common_jll v0.12.6+0 [73a04cd5] aws_c_compression_jll v0.3.2+0 [3254fc65] aws_c_http_jll v0.10.13+0 [13c41daa] aws_c_io_jll v0.26.3+0 ⌅ [bd1f34fb] aws_c_s3_jll v0.11.5+0 [1282aa60] aws_c_sdkutils_jll v0.2.4+1 [b2a88e68] aws_checksums_jll v0.2.10+0 [c4b69c83] dlfcn_win32_jll v1.4.2+0 [477f73a3] libaec_jll v1.1.6+0 [9aeb927a] mpif_jll v0.1.7+0 [cddc5d3d] s2n_tls_jll v1.7.2+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.5.1+0 [deac9b47] LibCURL_jll v8.19.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2026.3.19 [4536629a] OpenBLAS_jll v0.3.33+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.6+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.69.0+0 [3f19e933] p7zip_jll v17.8.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... /tmp/jl_C4Hqoo Running all tests... ####### Binarization of CSV (Julia API) ####### 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 ####### Binarization of CSV (Command line) ####### WARNING: Imported binding Logging.termlength was undeclared at import time during import to WebSockets. WARNING: Imported binding Logging.showvalue was undeclared at import time during import to WebSockets. 1 dependency had output during precompilation: ┌ WebSockets │ WARNING: Imported binding Logging.termlength was undeclared at import time during import to WebSockets. │ WARNING: Imported binding Logging.showvalue was undeclared at import time during import to WebSockets. └ Parsed args: binfile => /tmp/jl_C4Hqoo/Data.zst csvfile => /tmp/jl_C4Hqoo/Data.csv 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 ####### Binarization of MM (Julia API) ####### ####### Binarization of MM (Command line) ####### Parsed args: mmfile => /tmp/jl_C4Hqoo/Data.mtx binfile => /tmp/jl_C4Hqoo/Data.mtx.zst ####### Binarization of Binary COO (Julia API) ####### ####### Binarization of Binary COO (Command line) ####### Parsed args: bincoofile => /tmp/jl_C4Hqoo/Data.bincoo binfile => /tmp/jl_C4Hqoo/Data.bincoo.zst ####### Summarization (Julia API) ####### 1 / 2 : Column-wise statistics are calculated... 2 / 2 : Row-wise statistics are calculated... ####### Summarization (Command line) ####### Parsed args: binfile => /tmp/jl_C4Hqoo/Data.zst outdir => /tmp/jl_heXug4 pseudocount => 1.0 mode => dense 1 / 2 : Column-wise statistics are calculated... 2 / 2 : Row-wise statistics are calculated... ####### Summarization (Julia API) ####### 1 / 2 : Column-wise statistics are calculated... 2 / 2 : Row-wise statistics are calculated... ####### Summarization (Command line) ####### Parsed args: binfile => /tmp/jl_C4Hqoo/Data.mtx.zst outdir => /tmp/jl_CONFQ4 pseudocount => 1.0 mode => sparse_mm 1 / 2 : Column-wise statistics are calculated... 2 / 2 : Row-wise statistics are calculated... ####### HVG (Julia API) ####### Highly Variable Genes are calculated... ####### HVG (Command line) ####### Parsed args: rowvarlist => /tmp/jl_heXug4/Feature_Vars.csv binfile => /tmp/jl_C4Hqoo/Data.zst outdir => /tmp/jl_heXug4 rowcv2list => /tmp/jl_heXug4/Feature_CV2s.csv rowmeanlist => /tmp/jl_heXug4/Feature_Means.csv Highly Variable Genes are calculated... ####### Filtering (Julia API) ####### ####### Filtering (Command line) ####### Parsed args: input => /tmp/jl_C4Hqoo/Data.zst samplelist => /tmp/jl_heXug4/Sample_NoCounts.csv outdir => /tmp/jl_heXug4 thr2 => 10 direct1 => + direct2 => + featurelist => /tmp/jl_heXug4/Feature_Means.csv thr1 => 10 Parsed args: input => /tmp/jl_C4Hqoo/Data.zst samplelist => outdir => /tmp/jl_heXug4 thr2 => 10 direct1 => + direct2 => + featurelist => /tmp/jl_heXug4/Feature_Means.csv thr1 => 10 Parsed args: input => /tmp/jl_C4Hqoo/Data.zst samplelist => /tmp/jl_heXug4/Sample_NoCounts.csv outdir => /tmp/jl_heXug4 thr2 => 10 direct1 => + direct2 => + featurelist => thr1 => 10 ####### GD (Julia API) ####### ####### GD (Command line) ####### Parsed args: scale => "ftt" logdir => "/tmp/jl_heXug4" initW => nothing scheduling => "robbins-monro" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_C4Hqoo/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_heXug4/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_heXug4" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Parsed args: scale => "ftt" logdir => "/tmp/jl_heXug4" initW => "/tmp/jl_heXug4/Eigen_vectors.csv" scheduling => "momentum" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_C4Hqoo/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_heXug4/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_heXug4" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Parsed args: scale => "ftt" logdir => "/tmp/jl_heXug4" initW => nothing scheduling => "nag" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_C4Hqoo/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_heXug4/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_heXug4" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => "/tmp/jl_heXug4/Loadings.csv" Parsed args: scale => "ftt" logdir => "/tmp/jl_heXug4" initW => nothing scheduling => "adagrad" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_C4Hqoo/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_heXug4/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_heXug4" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing ####### Oja (Julia API) ####### Progress: 1%|▎ | ETA: 0:03:00 Progress: 1%|▍ | ETA: 0:03:16 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Progress: 1%|▎ | ETA: 0:03:11 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Progress: 1%|▎ | ETA: 0:03:15 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Progress: 1%|▎ | ETA: 0:01:35 Progress: 100%|█████████████████████████████████████████| Time: 0:00:00 ####### Oja (Command line) ####### Parsed args: scale => "ftt" logdir => "/tmp/jl_heXug4" initW => nothing scheduling => "robbins-monro" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_C4Hqoo/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_heXug4/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_heXug4" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:06:47 Progress: 1%|▌ | ETA: 0:04:00 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Parsed args: scale => "ftt" logdir => "/tmp/jl_heXug4" initW => nothing scheduling => "momentum" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_C4Hqoo/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_heXug4/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_heXug4" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:06:58 Progress: 77%|███████████████████████████████▍ | ETA: 0:00:01 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Parsed args: scale => "ftt" logdir => "/tmp/jl_heXug4" initW => nothing scheduling => "nag" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_C4Hqoo/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_heXug4/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_heXug4" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:09:16 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Parsed args: scale => "ftt" logdir => "/tmp/jl_heXug4" initW => nothing scheduling => "adagrad" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_C4Hqoo/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_heXug4/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_heXug4" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:09:21 Progress: 100%|█████████████████████████████████████████| Time: 0:00:04 ####### SGD (Julia API) ####### Progress: 1%|▎ | ETA: 0:03:27 Progress: 1%|▍ | ETA: 0:04:28 Progress: 100%|█████████████████████████████████████████| Time: 0:00:02 Progress: 1%|▎ | ETA: 0:04:32 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Progress: 1%|▎ | ETA: 0:04:55 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Progress: 1%|▎ | ETA: 0:03:51 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 ####### SGD (Command line) ####### Parsed args: scale => "ftt" logdir => "/tmp/jl_heXug4" initW => nothing scheduling => "robbins-monro" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_C4Hqoo/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_heXug4/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_heXug4" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:07:04 Progress: 1%|▍ | ETA: 0:05:46 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Parsed args: scale => "ftt" logdir => "/tmp/jl_heXug4" initW => nothing scheduling => "momentum" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_C4Hqoo/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_heXug4/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_heXug4" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:06:48 Progress: 49%|████████████████████▎ | ETA: 0:00:04 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Parsed args: scale => "ftt" logdir => "/tmp/jl_heXug4" initW => nothing scheduling => "nag" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_C4Hqoo/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_heXug4/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_heXug4" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:10:21 Progress: 100%|█████████████████████████████████████████| Time: 0:00:04 Parsed args: scale => "ftt" logdir => "/tmp/jl_heXug4" initW => nothing scheduling => "adagrad" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_C4Hqoo/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_heXug4/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_heXug4" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:10:08 Progress: 100%|█████████████████████████████████████████| Time: 0:00:04 ####### CCIPCA (Julia API) ####### Progress: 1%|▎ | ETA: 0:02:26 Progress: 1%|▍ | ETA: 0:02:46 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 ####### CCIPCA (Command line) ####### Parsed args: scale => "ftt" logdir => "/tmp/jl_heXug4" initW => nothing lower => 0 stepsize => "1.0e-15" dim => "3" rowvarlist => "" offsetStoch => 1.0f-15 expvar => 0.1f0 input => "/tmp/jl_C4Hqoo/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_heXug4/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_heXug4" upper => 1.0f38 numepoch => "1" initV => nothing Progress: 1%|▎ | ETA: 0:09:48 Progress: 1%|▍ | ETA: 0:07:30 Progress: 100%|█████████████████████████████████████████| Time: 0:00:04 ####### RSGD (Julia API) ####### Progress: 1%|▎ | ETA: 0:14:17 Progress: 1%|▍ | ETA: 0:11:23 Progress: 34%|██████████████▏ | ETA: 0:00:14 Progress: 100%|█████████████████████████████████████████| Time: 0:00:07 Progress: 1%|▎ | ETA: 0:03:50 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Progress: 1%|▎ | ETA: 0:05:14 Progress: 100%|█████████████████████████████████████████| Time: 0:00:02 Progress: 1%|▎ | ETA: 0:03:26 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 ####### RSGD (Command line) ####### Parsed args: scale => "ftt" logdir => "/tmp/jl_heXug4" initW => nothing scheduling => "robbins-monro" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_C4Hqoo/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_heXug4/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_heXug4" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:13:53 Progress: 1%|▍ | ETA: 0:10:18 Progress: 34%|█████████████▊ | ETA: 0:00:13 Progress: 100%|█████████████████████████████████████████| Time: 0:00:06 Parsed args: scale => "ftt" logdir => "/tmp/jl_heXug4" initW => nothing scheduling => "momentum" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_C4Hqoo/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_heXug4/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_heXug4" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:14:18 Progress: 34%|█████████████▊ | ETA: 0:00:13 Progress: 100%|█████████████████████████████████████████| Time: 0:00:06 Parsed args: scale => "ftt" logdir => "/tmp/jl_heXug4" initW => nothing scheduling => "nag" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_C4Hqoo/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_heXug4/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_heXug4" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:14:54 Progress: 34%|█████████████▊ | ETA: 0:00:13 Progress: 100%|█████████████████████████████████████████| Time: 0:00:06 Parsed args: scale => "ftt" logdir => "/tmp/jl_heXug4" initW => nothing scheduling => "adagrad" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_C4Hqoo/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_heXug4/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_heXug4" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:15:32 Progress: 34%|█████████████▊ | ETA: 0:00:14 Progress: 100%|█████████████████████████████████████████| Time: 0:00:06 ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1682 running 1 of 1 signal (10): User defined signal 1 _ZNK4llvm17DominatorTreeBaseINS_10BasicBlockELb0EE7getNodeEPKS1_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm14DomTreeBuilder11SemiNCAInfoINS_17DominatorTreeBaseINS_10BasicBlockELb0EEEE16attachNewSubtreeERS4_PNS_15DomTreeNodeBaseIS3_EE.isra.0 at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm14DomTreeBuilder11SemiNCAInfoINS_17DominatorTreeBaseINS_10BasicBlockELb0EEEE20CalculateFromScratchERS4_PNS5_15BatchUpdateInfoE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN12_GLOBAL__N_18Verifier6verifyERKN4llvm8FunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm14verifyFunctionERKNS_8FunctionEPNS_11raw_ostreamE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) verifyLLVMIR at /source/src/pipeline.cpp:1087:23 processLoop at /source/src/llvm-simdloop.cpp:304:5 [inlined] run at /source/src/llvm-simdloop.cpp:322:20 run at /source/usr/include/llvm/IR/PassManagerInternal.h:91:41 _ZN4llvm11PassManagerINS_4LoopENS_15AnalysisManagerIS1_JRNS_27LoopStandardAnalysisResultsEEEEJS4_RNS_10LPMUpdaterEEE13runSinglePassIS1_St10unique_ptrINS_6detail11PassConceptIS1_S5_JS4_S7_EEESt14default_deleteISD_EEEESt8optionalINS_17PreservedAnalysesEERT_RT0_RS5_S4_S7_RNS_19PassInstrumentationE.isra.0 at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm11PassManagerINS_4LoopENS_15AnalysisManagerIS1_JRNS_27LoopStandardAnalysisResultsEEEEJS4_RNS_10LPMUpdaterEEE24runWithoutLoopNestPassesERS1_RS5_S4_S7_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm11PassManagerINS_4LoopENS_15AnalysisManagerIS1_JRNS_27LoopStandardAnalysisResultsEEEEJS4_RNS_10LPMUpdaterEEE3runERS1_RS5_S4_S7_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91:41 _ZN4llvm25FunctionToLoopPassAdaptor3runERNS_8FunctionERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91:41 _ZN4llvm11PassManagerINS_8FunctionENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91:41 _ZN4llvm27ModuleToFunctionPassAdaptor3runERNS_6ModuleERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91:41 _ZN4llvm11PassManagerINS_6ModuleENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/src/pipeline.cpp:977:12 operator() at /source/src/jitlayers.cpp:1298:17 operator() at /source/src/jitlayers.cpp:1435:12 [inlined] optimizeModule at /source/src/jitlayers.cpp:2353:18 materialize at /source/src/jitlayers.cpp:905:31 _ZN4llvm3orc19MaterializationTask3runEv at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) dispatch at /source/src/julia-task-dispatcher.h:353:11 _ZN4llvm3orc16ExecutionSession22dispatchOutstandingMUsEv at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm3orc16ExecutionSession17OL_completeLookupESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EESt10shared_ptrINS0_23AsynchronousSymbolQueryEESt8functionIFvRKNS_8DenseMapIPNS0_8JITDylibENS_8DenseSetINS0_15SymbolStringPtrENS_12DenseMapInfoISF_vEEEENSG_ISD_vEENS_6detail12DenseMapPairISD_SI_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm3orc25InProgressFullLookupState8completeESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm3orc16ExecutionSession19OL_applyQueryPhase1ESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EENS_5ErrorE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm3orc16ExecutionSession6lookupENS0_10LookupKindERKSt6vectorISt4pairIPNS0_8JITDylibENS0_19JITDylibLookupFlagsEESaIS8_EENS0_15SymbolLookupSetENS0_11SymbolStateENS_15unique_functionIFvNS_8ExpectedINS_8DenseMapINS0_15SymbolStringPtrENS0_17ExecutorSymbolDefENS_12DenseMapInfoISI_vEENS_6detail12DenseMapPairISI_SJ_EEEEEEEEESt8functionIFvRKNSH_IS6_NS_8DenseSetISI_SL_EENSK_IS6_vEENSN_IS6_SV_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) publishCIs at /source/src/jitlayers.cpp:2056:14 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:510:39 jl_compile_method_internal at /source/src/gf.c:3650:27 _jl_invoke at /source/src/gf.c:4103:16 [inlined] ijl_apply_generic at /source/src/gf.c:4337:12 rsgd at /home/pkgeval/.julia/packages/OnlinePCA/AhPWT/src/rsgd.jl:124:214 unknown function (ip: 0x7e689d737d1b) at (unknown file) _jl_invoke at /source/src/gf.c:4111:23 [inlined] ijl_apply_generic at /source/src/gf.c:4337:12 #rsgd#69 at /home/pkgeval/.julia/packages/OnlinePCA/AhPWT/src/rsgd.jl:63:157 rsgd at /home/pkgeval/.julia/packages/OnlinePCA/AhPWT/src/rsgd.jl:47:409 unknown function (ip: 0x7e689d724974) at (unknown file) _jl_invoke at /source/src/gf.c:4111:23 [inlined] ijl_apply_generic at /source/src/gf.c:4337:12 main at /home/pkgeval/.julia/packages/OnlinePCA/AhPWT/bin/rsgd:114:293 unknown function (ip: 0x7e689d709c5f) at (unknown file) _jl_invoke at /source/src/gf.c:4111:23 [inlined] ijl_apply_generic at /source/src/gf.c:4337:12 jl_apply at /source/src/julia.h:2327:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:243:16 eval_stmt_value at /source/src/interpreter.c:194:23 [inlined] eval_body at /source/src/interpreter.c:710:13 jl_interpret_toplevel_thunk at /source/src/interpreter.c:901:21 ijl_eval_thunk at /source/src/toplevel.c:768:18 jl_toplevel_eval_flex at /source/src/toplevel.c:712:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:602:15 jl_toplevel_eval_flex at /source/src/toplevel.c:684:27 ijl_toplevel_eval at /source/src/toplevel.c:782:12 ijl_toplevel_eval_in at /source/src/toplevel.c:827:13 eval at ./boot.jl:517:3 include_string at ./loading.jl:3113:145 _jl_invoke at /source/src/gf.c:4111:23 [inlined] ijl_apply_generic at /source/src/gf.c:4337:12 _include at ./loading.jl:3173:45 include at ./Base.jl:326:4 exec_options at ./client.jl:352:571 _start at ./client.jl:593:36 jfptr__start_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4111:23 [inlined] ijl_apply_generic at /source/src/gf.c:4337:12 jl_apply at /source/src/julia.h:2327:12 [inlined] true_main at /source/src/jlapi.c:971:29 jl_repl_entrypoint at /source/src/jlapi.c:1138:15 main at /source/cli/loader_exe.c:58:15 unknown function (ip: 0x7e68a6af6249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007e688c1fc010 Total snapshots: 1. Utilization: 100% ╎1 @Base/client.jl:593 _start() ╎ 1 @Base/client.jl:352 exec_options(opts::Base.JLOptions) ╎ 1 @Base/Base.jl:326 include(mod::Module, _path::String) ╎ 1 @Base/loading.jl:3173 _include(mapexpr::Function, mod::Module, _path::S… ╎ 1 @Base/loading.jl:3113 include_string(mapexpr::typeof(identity), mod::M… ╎ 1 @Base/boot.jl:517 eval(m::Module, e::Any) ╎ ╎ 1 @OnlinePCA/bin/rsgd:114 main() ╎ ╎ 1 @OnlinePCA/…rc/rsgd.jl:47 kwcall(::@NamedTuple{input::String, scale… ╎ ╎ 1 @OnlinePCA/…rc/rsgd.jl:63 rsgd(; input::String, outdir::Nothing, s… ╎ ╎ 1 @OnlinePCA/…c/rsgd.jl:124 rsgd(input::String, outdir::Nothing, sc… ####### SVRG (Julia API) ####### Progress: 1%|▎ | ETA: 0:05:59 Progress: 1%|▍ | ETA: 0:06:53 Progress: 100%|█████████████████████████████████████████| Time: 0:00:04 ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 778 running 1 of 1 signal (10): User defined signal 1 _ZN4llvm12CmpPredicate11getMatchingES0_S0_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZL18isImpliedCondICmpsPKN4llvm8ICmpInstENS_12CmpPredicateEPKNS_5ValueES6_RKNS_10DataLayoutEb.constprop.0 at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm18isImpliedConditionEPKNS_5ValueENS_12CmpPredicateES2_S2_RKNS_10DataLayoutEbj at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm18isImpliedConditionEPKNS_5ValueENS_12CmpPredicateES2_S2_RKNS_10DataLayoutEbj at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm23isImpliedByDomConditionENS_12CmpPredicateEPKNS_5ValueES3_PKNS_11InstructionERKNS_10DataLayoutE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZL16simplifyICmpInstN4llvm12CmpPredicateEPNS_5ValueES2_RKNS_13SimplifyQueryEj at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZL31simplifyInstructionWithOperandsPN4llvm11InstructionENS_8ArrayRefIPNS_5ValueEEERKNS_13SimplifyQueryEj at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm19simplifyInstructionEPNS_11InstructionERKNS_13SimplifyQueryE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZL7runImplRN4llvm8FunctionERKNS_13SimplifyQueryE.constprop.0 at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm16InstSimplifyPass3runERNS_8FunctionERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91:41 _ZN4llvm11PassManagerINS_8FunctionENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91:41 _ZN4llvm27ModuleToFunctionPassAdaptor3runERNS_6ModuleERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91:41 _ZN4llvm11PassManagerINS_6ModuleENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/src/pipeline.cpp:977:12 operator() at /source/src/jitlayers.cpp:1298:17 operator() at /source/src/jitlayers.cpp:1435:12 [inlined] optimizeModule at /source/src/jitlayers.cpp:2353:18 materialize at /source/src/jitlayers.cpp:905:31 _ZN4llvm3orc19MaterializationTask3runEv at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) dispatch at /source/src/julia-task-dispatcher.h:353:11 _ZN4llvm3orc16ExecutionSession22dispatchOutstandingMUsEv at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm3orc16ExecutionSession17OL_completeLookupESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EESt10shared_ptrINS0_23AsynchronousSymbolQueryEESt8functionIFvRKNS_8DenseMapIPNS0_8JITDylibENS_8DenseSetINS0_15SymbolStringPtrENS_12DenseMapInfoISF_vEEEENSG_ISD_vEENS_6detail12DenseMapPairISD_SI_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm3orc25InProgressFullLookupState8completeESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm3orc16ExecutionSession19OL_applyQueryPhase1ESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EENS_5ErrorE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm3orc16ExecutionSession6lookupENS0_10LookupKindERKSt6vectorISt4pairIPNS0_8JITDylibENS0_19JITDylibLookupFlagsEESaIS8_EENS0_15SymbolLookupSetENS0_11SymbolStateENS_15unique_functionIFvNS_8ExpectedINS_8DenseMapINS0_15SymbolStringPtrENS0_17ExecutorSymbolDefENS_12DenseMapInfoISI_vEENS_6detail12DenseMapPairISI_SJ_EEEEEEEEESt8functionIFvRKNSH_IS6_NS_8DenseSetISI_SL_EENSK_IS6_vEENSN_IS6_SV_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) publishCIs at /source/src/jitlayers.cpp:2056:14 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:510:39 jl_compile_method_internal at /source/src/gf.c:3650:27 _jl_invoke at /source/src/gf.c:4103:16 [inlined] ijl_apply_generic at /source/src/gf.c:4337:12 #svrg##0 at /home/pkgeval/.julia/packages/OnlinePCA/AhPWT/src/svrg.jl:103:168 #open#333 at ./io.jl:429:18 unknown function (ip: 0x7485e773a5ac) at (unknown file) _jl_invoke at /source/src/gf.c:4111:23 [inlined] ijl_apply_generic at /source/src/gf.c:4337:12 open at ./io.jl:426:5 svrg at /home/pkgeval/.julia/packages/OnlinePCA/AhPWT/src/svrg.jl:89:186 unknown function (ip: 0x7485e773a1bd) at (unknown file) _jl_invoke at /source/src/gf.c:4111:23 [inlined] ijl_apply_generic at /source/src/gf.c:4337:12 #svrg#71 at /home/pkgeval/.julia/packages/OnlinePCA/AhPWT/src/svrg.jl:63:158 svrg at /home/pkgeval/.julia/packages/OnlinePCA/AhPWT/src/svrg.jl:47:409 unknown function (ip: 0x7485e7723c9f) at (unknown file) _jl_invoke at /source/src/gf.c:4111:23 [inlined] ijl_apply_generic at /source/src/gf.c:4337:12 jl_apply at /source/src/julia.h:2327:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:243:16 eval_stmt_value at /source/src/interpreter.c:194:23 [inlined] eval_body at /source/src/interpreter.c:710:13 jl_interpret_toplevel_thunk at /source/src/interpreter.c:901:21 ijl_eval_thunk at /source/src/toplevel.c:768:18 jl_toplevel_eval_flex at /source/src/toplevel.c:712:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:602:15 jl_toplevel_eval_flex at /source/src/toplevel.c:684:27 ijl_toplevel_eval at /source/src/toplevel.c:782:12 ijl_toplevel_eval_in at /source/src/toplevel.c:827:13 eval at ./boot.jl:517:3 include_string at ./loading.jl:3113:145 _jl_invoke at /source/src/gf.c:4111:23 [inlined] ijl_apply_generic at /source/src/gf.c:4337:12 _include at ./loading.jl:3173:45 include at ./Base.jl:327:3 IncludeInto at ./Base.jl:328:4 jfptr_IncludeInto_1.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4111:23 [inlined] ijl_apply_generic at /source/src/gf.c:4337:12 jl_apply at /source/src/julia.h:2327:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:243:16 eval_stmt_value at /source/src/interpreter.c:194:23 [inlined] eval_body at /source/src/interpreter.c:710:13 jl_interpret_toplevel_thunk at /source/src/interpreter.c:901:21 ijl_eval_thunk at /source/src/toplevel.c:768:18 jl_toplevel_eval_flex at /source/src/toplevel.c:712:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:602:15 jl_toplevel_eval_flex at /source/src/toplevel.c:684:27 ijl_toplevel_eval at /source/src/toplevel.c:782:12 ijl_toplevel_eval_in at /source/src/toplevel.c:827:13 eval at ./boot.jl:517:3 include_string at ./loading.jl:3113:145 _jl_invoke at /source/src/gf.c:4111:23 [inlined] ijl_apply_generic at /source/src/gf.c:4337:12 _include at ./loading.jl:3173:45 include at ./Base.jl:327:3 IncludeInto at ./Base.jl:328:4 jfptr_IncludeInto_1.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4111:23 [inlined] ijl_apply_generic at /source/src/gf.c:4337:12 jl_apply at /source/src/julia.h:2327:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:243:16 eval_stmt_value at /source/src/interpreter.c:194:23 [inlined] eval_body at /source/src/interpreter.c:710:13 jl_interpret_toplevel_thunk at /source/src/interpreter.c:901:21 ijl_eval_thunk at /source/src/toplevel.c:768:18 jl_toplevel_eval_flex at /source/src/toplevel.c:712:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:602:15 jl_toplevel_eval_flex at /source/src/toplevel.c:684:27 ijl_toplevel_eval at /source/src/toplevel.c:782:12 ijl_toplevel_eval_in at /source/src/toplevel.c:827:13 eval at ./boot.jl:517:3 exec_options at ./client.jl:318:410 _start at ./client.jl:593:36 jfptr__start_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4111:23 [inlined] ijl_apply_generic at /source/src/gf.c:4337:12 jl_apply at /source/src/julia.h:2327:12 [inlined] true_main at /source/src/jlapi.c:971:29 jl_repl_entrypoint at /source/src/jlapi.c:1138:15 main at /source/cli/loader_exe.c:58:15 unknown function (ip: 0x748606c60249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== Progress: 1%|▎ | ETA: 0:09:09┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007485ec3fc010 Total snapshots: 1. Utilization: 100% ╎1 @Base/client.jl:593 _start() ╎ 1 @Base/client.jl:318 exec_options(opts::Base.JLOptions) ╎ 1 @Base/boot.jl:517 eval(m::Module, e::Any) ╎ 1 @Base/Base.jl:328 (::Base.IncludeInto)(fname::String) ╎ 1 @Base/Base.jl:327 include(mapexpr::Function, mod::Module, _path::Strin… ╎ 1 @Base/loading.jl:3173 _include(mapexpr::Function, mod::Module, _path:… ╎ ╎ 1 @Base/loading.jl:3113 include_string(mapexpr::typeof(identity), mod:… ╎ ╎ 1 @Base/boot.jl:517 eval(m::Module, e::Any) ╎ ╎ 1 @Base/Base.jl:328 (::Base.IncludeInto)(fname::String) ╎ ╎ 1 @Base/Base.jl:327 include(mapexpr::Function, mod::Module, _path::… ╎ ╎ 1 @Base/loading.jl:3173 _include(mapexpr::Function, mod::Module, _… ╎ ╎ ╎ 1 @Base/loading.jl:3113 include_string(mapexpr::typeof(identity),… ╎ ╎ ╎ 1 @Base/boot.jl:517 eval(m::Module, e::Any) ╎ ╎ ╎ 1 @OnlinePCA/…/svrg.jl:47 kwcall(::@NamedTuple{input::String, d… ╎ ╎ ╎ 1 @OnlinePCA/…/svrg.jl:63 svrg(; input::String, outdir::Nothin… ╎ ╎ ╎ 1 @OnlinePCA/…svrg.jl:89 svrg(input::String, outdir::Nothing,… ╎ ╎ ╎ ╎ 1 @Base/io.jl:426 open(f::Function, args::String) ╎ ╎ ╎ ╎ 1 @Base/io.jl:429 open(f::OnlinePCA.var"#svrg##0#svrg##1"{S… ╎ ╎ ╎ ╎ 1 @OnlinePCA/…vrg.jl:103 (::OnlinePCA.var"#svrg##0#svrg##1… Progress: 100%|█████████████████████████████████████████| Time: 0:00:06 Progress: 1%|▎ | ETA: 0:10:10 Progress: 100%|█████████████████████████████████████████| Time: 0:00:04 Progress: 1%|▎ | ETA: 0:07:35 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 ####### SVRG (Command line) ####### ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457:34 wait at ./task.jl:1246:50 wait_forever at ./task.jl:1168:5 jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4111:23 [inlined] ijl_apply_generic at /source/src/gf.c:4337:12 jl_apply at /source/src/julia.h:2327:12 [inlined] start_task at /source/src/task.c:1275:19 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x0000752dbc64ee00 Total snapshots: 443. Utilization: 0% ╎443 @Base/task.jl:1168 wait_forever() 442╎ 443 @Base/task.jl:1246 wait() [778] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/OnlinePCA/AhPWT/test/test_svrg.jl:58 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457:34 [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457:34 wait at ./task.jl:1246:50 wait_forever at ./task.jl:1168:5 jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4111:23 [inlined] ijl_apply_generic at /source/src/gf.c:4337:12 jl_apply at /source/src/julia.h:2327:12 [inlined] start_task at /source/src/task.c:1275:19 unknown function (ip: (nil)) at (unknown file) Allocations: 34866384 (Pool: 34865334; Big: 1050); GC: 31 wait at ./task.jl:1246:50 wait_forever at ./task.jl:1168:5 jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4111:23 [inlined] ijl_apply_generic at /source/src/gf.c:4337:12 jl_apply at /source/src/julia.h:2327:12 [inlined] start_task at /source/src/task.c:1275:19 unknown function (ip: (nil)) at (unknown file) Allocations: 58065297 (Pool: 58064436; Big: 861); GC: 37 [1685] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/OnlinePCA/AhPWT/bin/svrg:145 gc_mark_obj8 at /source/src/gc-stock.c:1729:13 [inlined] gc_mark_outrefs at /source/src/gc-stock.c:2499:23 [inlined] gc_mark_and_steal at /source/src/gc-stock.c:2581:9 _jl_gc_collect at /source/src/gc-stock.c:3101:13 ijl_gc_collect at /source/src/gc-stock.c:3526:13 maybe_collect at /source/src/gc-stock.c:357:9 [inlined] jl_gc_small_alloc_inner at /source/src/gc-stock.c:734:5 jl_gc_small_alloc_noinline at /source/src/gc-stock.c:792:12 [inlined] jl_gc_alloc_ at /source/src/gc-stock.c:806:13 jl_alloc_genericmemory_unchecked at /source/src/genericmemory.c:41:30 GenericMemory at ./boot.jl:654:2 [inlined] copy at ./array.jl:389:10 [inlined] SNCA! at ./../usr/share/julia/Compiler/src/ssair/domtree.jl:345:77 update_domtree! at ./../usr/share/julia/Compiler/src/ssair/domtree.jl:259:16 [inlined] construct_domtree at ./../usr/share/julia/Compiler/src/ssair/domtree.jl:242:4 verify_ir at ./../usr/share/julia/Compiler/src/ssair/verify.jl:203:451 run_passes_ipo_safe at ./../usr/share/julia/Compiler/src/optimize.jl:1072:162 run_passes_ipo_safe at ./../usr/share/julia/Compiler/src/optimize.jl:1050:2 [inlined] optimize at ./../usr/share/julia/Compiler/src/optimize.jl:1023:3 jfptr_optimize_1.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4111:23 [inlined] ijl_apply_generic at /source/src/gf.c:4337:12 finish_nocycle at ./../usr/share/julia/Compiler/src/typeinfer.jl:278:23 jfptr_finish_nocycle_1.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4111:23 [inlined] ijl_apply_generic at /source/src/gf.c:4337:12 typeinf at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4887:187 const_prop_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:1457:152 abstract_call_method_with_const_args at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:951:79 abstract_call_method_with_const_args at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:919:3 [inlined] handle1 at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:189:54 infercalls at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:259:104 abstract_call_gf_by_type at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:340:173 abstract_call_known at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2999:1211 abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3107:51 abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3100:4 [inlined] abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3255:21 PkgEval terminated after 2740.03s: test duration exceeded the time limit