Package evaluation to test Decapodes on Julia 1.14.0-DEV.2114 (cccbcd9611*) started at 2026-05-05T17:57:37.216 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 15.49s ################################################################################ # Installation # Installing Decapodes... Resolving package versions... Installed CommonWorldInvalidations ──── v1.0.0 Installed Extents ───────────────────── v0.1.6 Installed Functors ──────────────────── v0.5.2 Installed OrderedCollections ────────── v1.8.1 Installed AlgebraicInterfaces ───────── v0.1.4 Installed SymbolicUtils ─────────────── v3.32.0 Installed PreallocationTools ────────── v1.2.0 Installed BibInternal ───────────────── v0.3.7 Installed StaticArrayInterface ──────── v1.10.0 Installed TetGen ────────────────────── v2.0.1 Installed NaNMath ───────────────────── v1.1.3 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed DiagrammaticEquations ─────── v0.2.6 Installed Tables ────────────────────── v1.12.1 Installed FileIO ────────────────────── v1.19.0 Installed InverseFunctions ──────────── v0.1.17 Installed Reexport ──────────────────── v1.2.2 Installed Missings ──────────────────── v1.2.0 Installed RegistryInstances ─────────── v0.1.0 Installed TableTraits ───────────────── v1.0.1 Installed Crayons ───────────────────── v4.1.1 Installed LaTeXStrings ──────────────── v1.4.0 Installed SortingAlgorithms ─────────── v1.2.2 Installed Format ────────────────────── v1.3.7 Installed Preferences ───────────────── v1.5.2 Installed Static ────────────────────── v1.4.0 Installed MLStyle ───────────────────── v0.4.17 Installed UnPack ────────────────────── v1.0.2 Installed TermInterface ─────────────── v2.0.0 Installed DiffResults ───────────────── v1.1.0 Installed URIs ──────────────────────── v1.6.1 Installed FillArrays ────────────────── v1.16.0 Installed MacroTools ────────────────── v0.5.16 Installed AbstractTrees ─────────────── v0.4.5 Installed DataStructures ────────────── v0.18.22 Installed OpenSSH_jll ───────────────── v10.3.1+0 Installed StatsBase ─────────────────── v0.34.10 Installed CodecZlib ─────────────────── v0.7.8 Installed ExprTools ─────────────────── v0.1.10 Installed CombinatorialSpaces ───────── v0.10.0 Installed GATlab ────────────────────── v0.2.2 Installed DataValueInterfaces ───────── v1.0.0 Installed PrettyPrint ───────────────── v0.2.0 Installed CommonSubexpressions ──────── v0.3.1 Installed ArrayLayouts ──────────────── v1.12.2 Installed ArrayInterface ────────────── v7.24.0 Installed Expat_jll ─────────────────── v2.8.0+0 Installed IrrationalConstants ───────── v0.2.6 Installed PEG ───────────────────────── v1.0.4 Installed IOCapture ─────────────────── v1.0.0 Installed StructEquality ────────────── v2.1.0 Installed CompositionsBase ──────────── v0.1.2 Installed DocStringExtensions ───────── v0.9.5 Installed Setfield ──────────────────── v1.1.2 Installed NameResolution ────────────── v0.1.5 Installed ForwardDiff ───────────────── v1.3.3 Installed LightXML ──────────────────── v0.9.3 Installed BibParser ─────────────────── v0.2.3 Installed DocumenterCitations ───────── v1.4.1 Installed ComponentArrays ───────────── v0.15.37 Installed Bijections ────────────────── v0.2.2 Installed Unityper ──────────────────── v0.1.6 Installed AliasTables ───────────────── v1.1.3 Installed Ghostscript_jll ───────────── v9.55.1+0 Installed Combinatorics ─────────────── v1.0.2 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed DynamicPolynomials ────────── v0.6.3 ┌ Warning: Downloaded package content does not match expected hash (git-tree-sha1); skipping this source │ package = "ACSets" │ url = "https://api.github.com/repos/AlgebraicJulia/ACSets.jl/tarball/dabea268e85bfa2d87019772d1e5b5115542450f" │ expected = SHA1("dabea268e85bfa2d87019772d1e5b5115542450f") │ computed = 20-element Vector{UInt8}: … └ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:1180 Installed Git_LFS_jll ───────────────── v3.7.0+0 Installed DataAPI ───────────────────── v1.16.0 Installed MeshIO ────────────────────── v0.5.3 Installed Krylov ────────────────────── v0.10.6 Installed Measures ──────────────────── v0.3.3 Installed TaskLocalValues ───────────── v0.1.3 Installed Colors ────────────────────── v0.13.1 Installed StaticArraysCore ──────────── v1.4.4 Installed StaticArrays ──────────────── v1.9.18 Installed SciMLPublic ───────────────── v1.0.1 Installed ColorTypes ────────────────── v0.12.1 Installed MultivariatePolynomials ───── v0.5.9 Installed Requires ──────────────────── v1.3.1 Installed Latexify ──────────────────── v0.16.10 Installed StringManipulation ────────── v0.4.4 Installed Documenter ────────────────── v1.17.0 Installed LogExpFunctions ───────────── v0.3.29 Installed DiffRules ─────────────────── v1.15.1 Installed JSON ──────────────────────── v0.21.4 Installed Git_jll ───────────────────── v2.54.0+0 Installed Decapodes ─────────────────── v0.6.8 Installed UnsafeAtomics ─────────────── v0.3.1 Installed Parsers ───────────────────── v2.8.4 Installed TestItems ─────────────────── v1.0.0 Installed JLLWrappers ───────────────── v1.7.1 Installed MutableArithmetics ────────── v1.7.1 Installed PrettyTables ──────────────── v3.3.2 Installed GeometryBasics ────────────── v0.5.10 Installed IterTools ─────────────────── v1.10.0 Installed StructTypes ───────────────── v1.11.0 Installed ConstructionBase ──────────── v1.6.0 Installed JSONSchema ────────────────── v1.5.0 Installed CompTime ──────────────────── v0.1.2 Installed JpegTurbo_jll ─────────────── v3.1.5+0 Installed Accessors ─────────────────── v0.1.44 Installed Compose ───────────────────── v0.9.6 Installed Adapt ─────────────────────── v4.5.2 Installed RuntimeGeneratedFunctions ─── v0.5.18 Installed JuliaVariables ────────────── v0.2.4 Installed EarCut_jll ────────────────── v2.2.4+0 Installed Statistics ────────────────── v1.11.1 Installed TranscodingStreams ────────── v0.11.3 Installed SymbolicIndexingInterface ─── v0.3.46 Installed Compat ────────────────────── v4.18.1 Installed StringEncodings ───────────── v0.3.7 Installed StatsAPI ──────────────────── v1.8.0 Installed LazyArrays ────────────────── v2.9.7 Installed ExproniconLite ────────────── v0.10.14 Installed Atomix ────────────────────── v1.1.3 Installed PrecompileTools ───────────── v1.3.3 Installed TimerOutputs ──────────────── v0.5.29 Installed JSON3 ─────────────────────── v1.14.3 Installed YAML ──────────────────────── v0.4.16 Installed MarkdownAST ───────────────── v0.1.3 Installed GeneralizedGenerated ──────── v0.3.3 Installed Bibliography ──────────────── v0.3.1 Installed ChainRulesCore ────────────── v1.26.1 Installed KernelAbstractions ────────── v0.9.41 Installed LazilyInitializedFields ───── v1.3.0 Installed IfElse ────────────────────── v0.1.1 Installed Parameters ────────────────── v0.12.3 Installed FixedPointNumbers ─────────── v0.8.5 Installed XML2_jll ──────────────────── v2.15.1+0 Installed PtrArrays ─────────────────── v1.4.0 Installed TetGen_jll ────────────────── v1.5.3+0 Installed Git ───────────────────────── v1.5.0 Installed SpecialFunctions ──────────── v2.7.2 Installed Libiconv_jll ──────────────── v1.18.0+0 Installed ANSIColoredPrinters ───────── v0.0.1 Installed Permutations ──────────────── v0.4.23 Installed Catlab ────────────────────── v0.17.5 Cloning [227ef7b5-1206-438b-ac65-934d6da304b8] ACSets from https://github.com/AlgebraicJulia/ACSets.jl.git Installed ACSets ────────────────────── v0.2.28 Installing 17 artifacts Installed artifact OpenSpecFun 194.9 KiB Installed artifact point_map 2.1 KiB Installed artifact Rectangle_30x10 29.4 KiB Installed artifact all_meshes 156.1 KiB Installed artifact Torus_30x10 292.4 KiB Installed artifact JpegTurbo 1.4 MiB Installed artifact EarCut 80.5 KiB Installed artifact Expat 287.9 KiB Installed artifact all_meshes2 55.4 KiB Installed artifact TetGen 296.4 KiB Installed artifact XML2 2.2 MiB Installed artifact OpenSSH 4.1 MiB Installed artifact Git_LFS 9.6 MiB Installed artifact icospheres1 4.1 MiB Installed artifact Libiconv 1.9 MiB Installed artifact Ghostscript 31.4 MiB Installed artifact Git 50.6 MiB Updating `~/.julia/environments/v1.14/Project.toml` [679ab3ea] + Decapodes v0.6.8 Updating `~/.julia/environments/v1.14/Manifest.toml` [227ef7b5] + ACSets v0.2.28 [a4c015fc] + 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[37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.1+0 [deac9b47] + LibCURL_jll v8.19.0+0 [e37daf67] + LibGit2_jll v1.9.2+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2026.3.19 [4536629a] + OpenBLAS_jll v0.3.33+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.6+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.69.0+0 [3f19e933] + p7zip_jll v17.8.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 21.75s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling project... 5.0 s ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. ERROR: LoadError: TypeError: in cglobal library name, expected Symbol, got a value of type Expr Stacktrace: [1] top-level scope @ ~/.julia/packages/LLVMExtra_jll/BEjLy/.pkg/platform_augmentation.jl:2 [2] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:327 [3] top-level scope @ ~/.julia/packages/LLVMExtra_jll/BEjLy/.pkg/select_artifacts.jl:4 [4] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:327 [5] top-level scope @ none:8 [6] eval(m::Module, e::Any) @ Core ./boot.jl:517 [7] exec_options(opts::Base.JLOptions) @ Base ./client.jl:318 [8] _start() @ Base ./client.jl:593 in expression starting at /home/pkgeval/.julia/packages/LLVMExtra_jll/BEjLy/.pkg/platform_augmentation.jl:2 in expression starting at /home/pkgeval/.julia/packages/LLVMExtra_jll/BEjLy/.pkg/select_artifacts.jl:4 ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/RUPmD/src/julia-1.13/activate_set.jl:78 ERROR: LoadError: TypeError: in cglobal library name, expected Symbol, got a value of type Expr Stacktrace: [1] top-level scope @ ~/.julia/packages/LLVMExtra_jll/BEjLy/.pkg/platform_augmentation.jl:2 [2] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:327 [3] top-level scope @ ~/.julia/packages/LLVMExtra_jll/BEjLy/.pkg/select_artifacts.jl:4 [4] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:327 [5] top-level scope @ none:8 [6] eval(m::Module, e::Any) @ Core ./boot.jl:517 [7] exec_options(opts::Base.JLOptions) @ Base ./client.jl:318 [8] _start() @ Base ./client.jl:593 in expression starting at /home/pkgeval/.julia/packages/LLVMExtra_jll/BEjLy/.pkg/platform_augmentation.jl:2 in expression starting at /home/pkgeval/.julia/packages/LLVMExtra_jll/BEjLy/.pkg/select_artifacts.jl:4 ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so --check-bounds=yes --pkgimages=existing -g1 -O0 --color=no --history-file=no --startup-file=no --project=/tmp/jl_GuVhn8/Project.toml --eval 'append!(empty!(Base.DEPOT_PATH), ["/home/pkgeval/.julia", "/usr/local/share/julia", "/opt/julia/local/share/julia", "/opt/julia/share/julia"]) │ append!(empty!(Base.DL_LOAD_PATH), String[]) │ │ if true │ push!(Base.LOAD_PATH, "@stdlib") │ end │ cd("/home/pkgeval/.julia/packages/LLVMExtra_jll/BEjLy/.pkg") │ include("/home/pkgeval/.julia/packages/LLVMExtra_jll/BEjLy/.pkg/select_artifacts.jl") │ ' --compile=min -t1 --startup-file=no x86_64-linux-gnu-libgfortran5-cxx11-julia_version+1.14.0`, ProcessExited(1)) [1] │ │ Stacktrace: │ [1] pipeline_error(proc::Base.Process) │ @ Base ./process.jl:612 [inlined] │ [2] read(cmd::Cmd) │ @ Base ./process.jl:490 │ [3] collect_artifacts(pkg_root::String; platform::Base.BinaryPlatforms.Platform, include_lazy::Bool) │ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:1273 │ [4] map(f::Pkg.Operations.var"#73#74"{UUID}, A::Vector{Tuple{String, Dict{String, Any}}}) │ @ Base /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:1258 [inlined] │ [5] (::Pkg.Operations.var"#71#72"{Base.BinaryPlatforms.Platform, Bool})(::Tuple{String, UUID}) │ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:1345 │ [6] iterate(g::Base.Generator{Vector{Tuple{String, Union{Nothing, UUID}}}, Pkg.Operations.var"#71#72"{Base.BinaryPlatforms.Platform, Bool}}, s::Int64) │ @ Base ./generator.jl:48 [inlined] │ [7] collect_to!(dest::Vector{Vector{Tuple{String, Dict{String, Any}, UUID}}}, itr::Base.Generator{Vector{Tuple{String, Union{Nothing, UUID}}}, Pkg.Operations.var"#71#72"{Base.BinaryPlatforms.Platform, Bool}}, offs::Int64, st::Int64) │ @ Base ./array.jl:914 │ [8] collect_to_with_first!(dest::Vector{Vector{Tuple{String, Dict{String, Any}, UUID}}}, v1::Vector{Tuple{String, Dict{String, Any}, UUID}}, itr::Base.Generator{Vector{Tuple{String, Union{Nothing, UUID}}}, Pkg.Operations.var"#71#72"{Base.BinaryPlatforms.Platform, Bool}}, st::Int64) │ @ Base ./array.jl:869 [inlined] │ [9] _collect(c::Vector{Tuple{String, Union{Nothing, UUID}}}, itr::Base.Generator{Vector{Tuple{String, Union{Nothing, UUID}}}, Pkg.Operations.var"#71#72"{Base.BinaryPlatforms.Platform, Bool}}, ::Base.EltypeUnknown, isz::Base.HasShape{1}) │ @ Base ./array.jl:863 │ [10] collect_similar(cont::Vector{Tuple{String, Union{Nothing, UUID}}}, itr::Base.Generator{Vector{Tuple{String, Union{Nothing, UUID}}}, Pkg.Operations.var"#71#72"{Base.BinaryPlatforms.Platform, Bool}}) │ @ Base ./array.jl:768 │ [11] in(x::UUID, s::Set{UUID}) │ @ Base ./abstractarray.jl:3390 [inlined] │ [12] download_artifacts(ctx::Pkg.Types.Context, pkgs::Base.ValueIterator{Dict{UUID, Pkg.Types.PackageEntry}}; platform::Base.BinaryPlatforms.Platform, julia_version::VersionNumber, verbose::Bool, io::Base.DevNull, include_lazy::Bool) │ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:1343 │ [13] download_artifacts │ @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:1300 [inlined] │ [14] download_artifacts(ctx::Pkg.Types.Context; platform::Base.BinaryPlatforms.Platform, julia_version::VersionNumber, verbose::Bool, io::Base.DevNull, include_lazy::Bool) │ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:1491 │ [15] up(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}, level::UpgradeLevel; skip_writing_project::Bool, preserve::Nothing) │ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2542 │ [16] iterate(A::Vector{PackageSpec}, state::Int64) │ @ Base /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2511 [inlined] │ [17] up(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; level::UpgradeLevel, mode::PackageMode, preserve::Nothing, update_registry::Bool, skip_writing_project::Bool, workspace::Bool, kwargs::@Kwargs{io::Base.DevNull}) │ @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:479 │ [18] up │ @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:446 [inlined] │ [19] ht_keyindex(h::Dict{UUID, Pkg.Types.PackageEntry}, key::UUID) │ @ Base /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:177 [inlined] │ [20] get(h::Dict{UUID, Pkg.Types.PackageEntry}, key::UUID, default::Nothing) │ @ Base /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:485 [inlined] │ [21] get(m::Pkg.Types.Manifest, key::UUID, default::Nothing) │ @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:484 [inlined] │ [22] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/RUPmD/src/julia-1.13/activate_set.jl:83 │ [23] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/RUPmD/src/julia-1.13/activate_set.jl:9 │ [24] (::var"#10#11")() │ @ Main /PkgEval.jl/scripts/precompile.jl:21 │ [25] Base.ScopedValues.Scope(scope::Nothing, pair::Pair{Base.ScopedValues.ScopedValue{IO}, Base.DevNull}) │ @ Base.ScopedValues /PkgEval.jl/scripts/common.jl:52 [inlined] │ [26] with(::var"#3#4"{var"#10#11"}, ::Pair{Base.ScopedValues.ScopedValue{IO}, Base.DevNull}) │ @ Base.ScopedValues ./scopedvalues.jl:324 │ [27] capture_pkg_output(f::var"#10#11"; suppress::Bool) │ @ Main /PkgEval.jl/scripts/common.jl:51 │ [28] suppress_pkg_output(f::Function) │ @ Main /PkgEval.jl/scripts/common.jl:35 │ [29] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:19 │ [30] include(mod::Module, _path::String) │ @ Base ./Base.jl:326 │ [31] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:352 │ [32] _start() │ @ Base ./client.jl:593 └ @ Main /PkgEval.jl/scripts/precompile.jl:24 Activating project at `~/.julia/environments/v1.14` Precompiling package dependencies... Precompiling project... 4.1 s ✓ MacroTools 0.8 s ✓ Reexport 1.2 s ✓ ConstructionBase 2.1 s ✓ IrrationalConstants 1.0 s ✓ Measures 0.9 s ✓ PrettyPrint 0.8 s ✓ DataValueInterfaces 0.9 s ✓ StatsAPI 0.9 s ✓ LazilyInitializedFields 2.3 s ✓ Format 0.9 s ✓ AlgebraicInterfaces 1.2 s ✓ IterTools 2.3 s ✓ Combinatorics 0.9 s ✓ TermInterface 1.4 s ✓ TranscodingStreams 0.9 s ✓ LaTeXStrings 0.8 s ✓ TestItems 1.2 s ✓ Statistics 1.0 s ✓ StaticArraysCore 0.8 s ✓ IfElse 0.8 s ✓ PtrArrays 0.8 s ✓ TaskLocalValues 1.1 s ✓ ANSIColoredPrinters 0.9 s ✓ DataAPI 0.9 s ✓ SciMLPublic 3.6 s ✓ ExproniconLite 0.9 s ✓ CommonWorldInvalidations 1.3 s ✓ URIs 3.6 s ✓ UnsafeAtomics 25.4 s ✓ MLStyle 1.0 s ✓ InverseFunctions 0.8 s ✓ CompositionsBase 1.1 s ✓ AbstractTrees 1.0 s ✓ Bijections 2.1 s ✓ FillArrays 0.9 s ✓ ExprTools 0.8 s ✓ UnPack 1.1 s ✓ Extents 1.4 s ✓ OrderedCollections 1.0 s ✓ PEG 1.2 s ✓ DocStringExtensions 0.8 s ✓ IteratorInterfaceExtensions 2.1 s ✓ Crayons 1.1 s ✓ IOCapture 1.0 s ✓ NaNMath 1.3 s ✓ Requires 15.0 s ✓ Krylov 2.1 s ✓ StructTypes 1.2 s ✓ Compat 1.6 s ✓ Preferences 12.5 s ✓ MutableArithmetics 1.8 s ✓ CommonSubexpressions 0.9 s ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 0.9 s ✓ NameResolution 5.6 s ✓ RegistryInstances 1.2 s ✓ Permutations 1.0 s ✓ CodecZlib 2.5 s ✓ BibInternal 1.5 s ✓ Statistics → SparseArraysExt 3.8 s ✓ FixedPointNumbers 0.9 s ✓ DiffResults 1.0 s ✓ AliasTables 1.0 s ✓ Missings 1.0 s ✓ Atomix 10.0 s ✓ CompTime 1.3 s ✓ InverseFunctions → InverseFunctionsDatesExt 1.8 s ✓ InverseFunctions → InverseFunctionsTestExt 0.8 s ✓ CompositionsBase → CompositionsBaseInverseFunctionsExt 1.8 s ✓ MarkdownAST 1.5 s ✓ FillArrays → FillArraysSparseArraysExt 1.1 s ✓ FillArrays → FillArraysStatisticsExt 3.2 s ✓ TimerOutputs 1.0 s ✓ RuntimeGeneratedFunctions 1.3 s ✓ Parameters 1.6 s ✓ LogExpFunctions 0.9 s ✓ TableTraits 1.0 s ✓ Adapt 9.6 s ✓ FileIO 0.9 s ✓ Compat → CompatLinearAlgebraExt 1.4 s ✓ PrecompileTools 1.7 s ✓ JLLWrappers 1.2 s ✓ Unityper 2.5 s ✓ Setfield 9.1 s ✓ JuliaVariables 2.4 s ✓ ColorTypes 5.0 s ✓ Accessors 0.8 s ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 1.9 s ✓ Tables 1.0 s ✓ ArrayInterface 1.3 s ✓ Adapt → AdaptSparseArraysExt 2.2 s ✓ ChainRulesCore 0.8 s ✓ StructEquality 3.1 s ✓ DataStructures 1.0 s ✓ Functors 3.0 s ✓ StringManipulation 14.5 s ✓ StaticArrays 18.0 s ✓ Parsers 8.9 s ✓ Static 2.4 s ✓ EarCut_jll 2.5 s ✓ OpenSpecFun_jll 2.3 s ✓ TetGen_jll 2.4 s ✓ Git_LFS_jll 2.5 s ✓ OpenSSH_jll 2.2 s ✓ Libiconv_jll 2.3 s ✓ Expat_jll 2.4 s ✓ JpegTurbo_jll 1.3 s ✓ ColorTypes → StyledStringsExt 8.6 s ✓ Colors 2.2 s ✓ Accessors → TestExt 2.8 s ✓ Accessors → LinearAlgebraExt 0.9 s ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 1.6 s ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 3.0 s ✓ PreallocationTools 1.5 s ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 3.3 s ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 0.8 s ✓ ArrayInterface → ArrayInterfaceChainRulesCoreExt 1.7 s ✓ SortingAlgorithms 11.6 s ✓ GeneralizedGenerated 39.2 s ✓ PrettyTables 2.0 s ✓ StaticArrays → StaticArraysStatisticsExt 1.9 s ✓ StaticArrays → StaticArraysChainRulesCoreExt 2.0 s ✓ ConstructionBase → ConstructionBaseStaticArraysExt 2.1 s ✓ FillArrays → FillArraysStaticArraysExt 1.8 s ✓ Adapt → AdaptStaticArraysExt 2.0 s ✓ Accessors → StaticArraysExt 15.3 s ✓ JSON3 4.4 s ✓ JSON 6.6 s ✓ StaticArrayInterface 22.6 s ✓ GeometryBasics 5.6 s ✓ SpecialFunctions 1.5 s ✓ StringEncodings 2.3 s ✓ XML2_jll 2.3 s ✓ Git_jll 2.5 s ✓ Ghostscript_jll 4.0 s ✓ SymbolicIndexingInterface 7.6 s ✓ MultivariatePolynomials 5.1 s ✓ StatsBase 22.0 s ✓ ArrayLayouts 8.3 s ✓ KernelAbstractions 38.0 s ✓ ACSets 2.0 s ✓ JSONSchema 7.7 s ✓ Compose 81.7 s ✓ GATlab 2.2 s ✓ StaticArrayInterface → StaticArrayInterfaceStaticArraysExt 2.7 s ✓ ComponentArrays 4.4 s ✓ TetGen 10.2 s ✓ MeshIO 4.8 s ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 1.4 s ✓ DiffRules 3.1 s ✓ YAML 1.4 s ✓ LightXML 1.4 s ✓ Git 7.3 s ✓ Latexify 4.2 s ✓ SymbolicIndexingInterface → SymbolicIndexingInterfacePrettyTablesExt 5.2 s ✓ DynamicPolynomials 4.0 s ✓ ArrayLayouts → ArrayLayoutsSparseArraysExt 3.4 s ✓ KernelAbstractions → SparseArraysExt 2.5 s ✓ KernelAbstractions → LinearAlgebraExt 2.0 s ✓ JSONSchema → JSONSchemaJSON3Ext 6.5 s ✓ ComponentArrays → ComponentArraysKernelAbstractionsExt 7.8 s ✓ ForwardDiff 2.8 s ✓ BibParser 195.6 s ✓ Catlab 44.0 s ✓ Documenter 2.9 s ✓ Latexify → SparseArraysExt 42.6 s ✓ SymbolicUtils 7.9 s ✓ LazyArrays 2.0 s ✓ ForwardDiff → ForwardDiffStaticArraysExt 3.0 s ✓ PreallocationTools → PreallocationToolsForwardDiffExt 5.7 s ✓ Bibliography WARNING: Constructor for type "Decapode" was extended in `DiagrammaticEquations` without explicit qualification or import.  NOTE: Assumed "Decapode" refers to `DecapodeACSet.Decapode`. This behavior is deprecated and may differ in future versions.  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function Decapode end`.  Hint: To silence the warning, qualify `Decapode` as `DecapodeACSet.Decapode` in the method signature or explicitly `import DecapodeACSet: Decapode`. WARNING: Constructor for type "SummationDecapode" was extended in `DiagrammaticEquations` without explicit qualification or import.  NOTE: Assumed "SummationDecapode" refers to `DecapodeACSet.SummationDecapode`. This behavior is deprecated and may differ in future versions.  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function SummationDecapode end`.  Hint: To silence the warning, qualify `SummationDecapode` as `DecapodeACSet.SummationDecapode` in the method signature or explicitly `import DecapodeACSet: SummationDecapode`. WARNING: Constructor for type "Term" was extended in `Parser` without explicit qualification or import.  NOTE: Assumed "Term" refers to `.Term`. This behavior is deprecated and may differ in future versions.  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function Term end`.  Hint: To silence the warning, qualify `Term` as `.Term` in the method signature or explicitly `import : Term`. WARNING: Constructor for type "Equation" was extended in `Parser` without explicit qualification or import.  NOTE: Assumed "Equation" refers to `decapodes.Equation`. This behavior is deprecated and may differ in future versions.  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function Equation end`.  Hint: To silence the warning, qualify `Equation` as `decapodes.Equation` in the method signature or explicitly `import decapodes: Equation`. WARNING: Constructor for type "Term" was extended in `DiagrammaticEquations` without explicit qualification or import.  NOTE: Assumed "Term" refers to `decapodes.Term`. This behavior is deprecated and may differ in future versions.  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function Term end`.  Hint: To silence the warning, qualify `Term` as `decapodes.Term` in the method signature or explicitly `import decapodes: Term`. 74.4 s ✓ DiagrammaticEquations 3.8 s ✓ LazyArrays → LazyArraysStaticArraysExt 11.0 s ✓ DocumenterCitations 63.2 s ✓ CombinatorialSpaces 67.8 s ✓ Decapodes 175 dependencies successfully precompiled in 1208 seconds. 37 already precompiled. 1 dependency had output during precompilation: ┌ DiagrammaticEquations │ WARNING: Constructor for type "Decapode" was extended in `DiagrammaticEquations` without explicit qualification or import. │ NOTE: Assumed "Decapode" refers to `DecapodeACSet.Decapode`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Decapode end`. │ Hint: To silence the warning, qualify `Decapode` as `DecapodeACSet.Decapode` in the method signature or explicitly `import DecapodeACSet: Decapode`. │ WARNING: Constructor for type "SummationDecapode" was extended in `DiagrammaticEquations` without explicit qualification or import. │ NOTE: Assumed "SummationDecapode" refers to `DecapodeACSet.SummationDecapode`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function SummationDecapode end`. │ Hint: To silence the warning, qualify `SummationDecapode` as `DecapodeACSet.SummationDecapode` in the method signature or explicitly `import DecapodeACSet: SummationDecapode`. │ WARNING: Constructor for type "Term" was extended in `Parser` without explicit qualification or import. │ NOTE: Assumed "Term" refers to `.Term`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Term end`. │ Hint: To silence the warning, qualify `Term` as `.Term` in the method signature or explicitly `import : Term`. │ WARNING: Constructor for type "Equation" was extended in `Parser` without explicit qualification or import. │ NOTE: Assumed "Equation" refers to `decapodes.Equation`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Equation end`. │ Hint: To silence the warning, qualify `Equation` as `decapodes.Equation` in the method signature or explicitly `import decapodes: Equation`. │ WARNING: Constructor for type "Term" was extended in `DiagrammaticEquations` without explicit qualification or import. │ NOTE: Assumed "Term" refers to `decapodes.Term`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Term end`. │ Hint: To silence the warning, qualify `Term` as `decapodes.Term` in the method signature or explicitly `import decapodes: Term`. └ Precompilation completed after 1246.87s ################################################################################ # Testing # Testing Decapodes ERROR: LoadError: TypeError: in cglobal library name, expected Symbol, got a value of type Expr Stacktrace: [1] top-level scope @ ~/.julia/packages/LLVMExtra_jll/BEjLy/.pkg/platform_augmentation.jl:2 [2] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:327 [3] top-level scope @ ~/.julia/packages/LLVMExtra_jll/BEjLy/.pkg/select_artifacts.jl:4 [4] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:327 [5] top-level scope @ none:8 [6] eval(m::Module, e::Any) @ Core ./boot.jl:517 [7] exec_options(opts::Base.JLOptions) @ Base ./client.jl:318 [8] _start() @ Base ./client.jl:593 in expression starting at /home/pkgeval/.julia/packages/LLVMExtra_jll/BEjLy/.pkg/platform_augmentation.jl:2 in expression starting at /home/pkgeval/.julia/packages/LLVMExtra_jll/BEjLy/.pkg/select_artifacts.jl:4 Testing failed after 10.47s ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so -g1 -O0 --color=no --history-file=no --startup-file=no --project=/tmp/jl_4Bgu9u/Project.toml --eval 'append!(empty!(Base.DEPOT_PATH), ["/home/pkgeval/.julia", "/usr/local/share/julia", "/opt/julia/local/share/julia", "/opt/julia/share/julia"]) append!(empty!(Base.DL_LOAD_PATH), String[]) if true push!(Base.LOAD_PATH, "@stdlib") end cd("/home/pkgeval/.julia/packages/LLVMExtra_jll/BEjLy/.pkg") include("/home/pkgeval/.julia/packages/LLVMExtra_jll/BEjLy/.pkg/select_artifacts.jl") ' --compile=min -t1 --startup-file=no x86_64-linux-gnu-libgfortran5-cxx11-julia_version+1.14.0`, ProcessExited(1)) [1] Stacktrace: [1] pipeline_error(proc::Base.Process) @ Base ./process.jl:612 [inlined] [2] read(cmd::Cmd) @ Base ./process.jl:490 [3] collect_artifacts(pkg_root::String; platform::Base.BinaryPlatforms.Platform, include_lazy::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:1273 [4] map(f::Pkg.Operations.var"#73#74"{UUID}, A::Vector{Tuple{String, Dict{String, Any}}}) @ Base /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:1258 [inlined] [5] (::Pkg.Operations.var"#71#72"{Base.BinaryPlatforms.Platform, Bool})(::Tuple{String, UUID}) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:1345 [6] iterate(g::Base.Generator{Vector{Tuple{String, Union{Nothing, UUID}}}, Pkg.Operations.var"#71#72"{Base.BinaryPlatforms.Platform, Bool}}, s::Int64) @ Base ./generator.jl:48 [inlined] [7] collect_to!(dest::Vector{Vector{Tuple{String, Dict{String, Any}, UUID}}}, itr::Base.Generator{Vector{Tuple{String, Union{Nothing, UUID}}}, Pkg.Operations.var"#71#72"{Base.BinaryPlatforms.Platform, Bool}}, offs::Int64, st::Int64) @ Base ./array.jl:914 [8] collect_to_with_first!(dest::Vector{Vector{Tuple{String, Dict{String, Any}, UUID}}}, v1::Vector{Tuple{String, Dict{String, Any}, UUID}}, itr::Base.Generator{Vector{Tuple{String, Union{Nothing, UUID}}}, Pkg.Operations.var"#71#72"{Base.BinaryPlatforms.Platform, Bool}}, st::Int64) @ Base ./array.jl:869 [inlined] [9] _collect(c::Vector{Tuple{String, Union{Nothing, UUID}}}, itr::Base.Generator{Vector{Tuple{String, Union{Nothing, UUID}}}, Pkg.Operations.var"#71#72"{Base.BinaryPlatforms.Platform, Bool}}, ::Base.EltypeUnknown, isz::Base.HasShape{1}) @ Base ./array.jl:863 [10] collect_similar(cont::Vector{Tuple{String, Union{Nothing, UUID}}}, itr::Base.Generator{Vector{Tuple{String, Union{Nothing, UUID}}}, Pkg.Operations.var"#71#72"{Base.BinaryPlatforms.Platform, Bool}}) @ Base ./array.jl:768 [11] in(x::UUID, s::Set{UUID}) @ Base ./abstractarray.jl:3390 [inlined] [12] download_artifacts(ctx::Pkg.Types.Context, pkgs::Base.ValueIterator{Dict{UUID, Pkg.Types.PackageEntry}}; platform::Base.BinaryPlatforms.Platform, julia_version::VersionNumber, verbose::Bool, io::IOContext{IO}, include_lazy::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:1343 [13] download_artifacts @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:1300 [inlined] [14] download_artifacts(ctx::Pkg.Types.Context; platform::Base.BinaryPlatforms.Platform, julia_version::VersionNumber, verbose::Bool, io::IOContext{IO}, include_lazy::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:1491 [15] up(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}, level::UpgradeLevel; skip_writing_project::Bool, preserve::Nothing) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2542 [16] iterate(A::Vector{PackageSpec}, state::Int64) @ Base /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2511 [inlined] [17] up(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; level::UpgradeLevel, mode::PackageMode, preserve::Nothing, update_registry::Bool, skip_writing_project::Bool, workspace::Bool, kwargs::@Kwargs{io::Base.DevNull}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:479 [18] up @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:446 [inlined] [19] up @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:177 [inlined] [20] #resolve#174 @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:485 [inlined] [21] resolve @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:484 [inlined] [22] (::Pkg.Operations.var"#215#216"{Bool, Bool, Bool, Pkg.Operations.var"#236#237"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, PackageSpec}, Pkg.Types.Context, PackageSpec, String, Bool, Pkg.Types.EnvCache})() @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2804 [23] with_temp_env(fn::Pkg.Operations.var"#215#216"{Bool, Bool, Bool, Pkg.Operations.var"#236#237"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, PackageSpec}, Pkg.Types.Context, PackageSpec, String, Bool, Pkg.Types.EnvCache}, temp_env::String) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2731 [24] get(h::Dict{UUID, Pkg.Types.PackageEntry}, key::UUID, default::Nothing) @ Base /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2788 [inlined] [25] get(m::Pkg.Types.Manifest, key::UUID, default::Nothing) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2781 [inlined] [26] (::Pkg.Operations.var"#220#221"{Dict{String, Any}, Bool, Bool, Bool, Pkg.Operations.var"#236#237"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, PackageSpec}, Pkg.Types.Context, PackageSpec, String, Pkg.Types.Project, String})(tmp::String) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2898 [27] mktempdir(fn::Pkg.Operations.var"#220#221"{Dict{String, Any}, Bool, Bool, Bool, Pkg.Operations.var"#236#237"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, PackageSpec}, Pkg.Types.Context, PackageSpec, String, Pkg.Types.Project, String}, parent::String; prefix::String) @ Base.Filesystem ./file.jl:943 [28] mktempdir(fn::Function, parent::String) @ Base.Filesystem ./file.jl:939 [29] sandbox(fn::Function, ctx::Pkg.Types.Context, target::PackageSpec, sandbox_path::String, sandbox_project_override_in::Pkg.Types.Project; preferences::Dict{String, Any}, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2844 [30] iterate(A::Vector{PackageSpec}, state::Int64) @ Base /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2834 [inlined] [31] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3115 [32] Cmd(cmd::Cmd) @ Base /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3025 [inlined] [33] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:586 [34] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [35] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [36] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [37] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined] [38] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [39] include(mod::Module, _path::String) @ Base ./Base.jl:326 [40] exec_options(opts::Base.JLOptions) @ Base ./client.jl:352 [41] _start() @ Base ./client.jl:593 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 1332.81s: there were unidentified errors